CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029748	Escherichia coli strain 2016C-3878 plasmid pMCR1-PA, complete sequence	0 crisprs	csa3	0	0	12	0
NZ_CP029747	Escherichia coli strain 2016C-3878 chromosome, complete genome	2 crisprs	DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK,WYL	0	2	8	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 27867

Escherichia_phage(33.33%)

transposase,integrase

attL 13316:13375|attR 17281:18101

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|228_933_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000844627.1\|2570_2813_+\|transposase	transposase	NA	NA	NA	NA
WP_000164043.1\|2844_3495_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_077248803.1\|3600_4800_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|4831_5716_-	EamA family transporter	NA	NA	NA	NA
WP_001351729.1\|5853_6246_-	cysteine hydrolase	NA	NA	NA	NA
WP_000844627.1\|8058_8301_+\|transposase	transposase	NA	NA	NA	NA
WP_000164043.1\|8332_8983_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_077248803.1\|9088_10288_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|10319_11204_-	EamA family transporter	NA	NA	NA	NA
WP_001351729.1\|11341_11734_-	cysteine hydrolase	NA	NA	NA	NA
13316:13375	attL	NA	NA	NA	NA
WP_001067855.1\|13368_14073_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000845048.1\|14870_15884_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|16039_16513_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001067855.1\|16582_17287_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_072794601.1\|17657_20624_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.8
17281:18101	attR	NA	NA	NA	NA
WP_000427619.1\|20702_21707_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|21888_22065_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_110826437.1\|22394_23210_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	1.3e-08	27.2
WP_001082320.1\|23270_24074_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480972.1\|24073_24910_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000027057.1\|25140_26001_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|26183_26741_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_020219413.1\|26904_27045_+	hypothetical protein	Q1MVP5	Enterobacteria_phage	1.3e-09	93.8
WP_001067855.1\|27162_27867_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

41089 : 42094

Aeromonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032192066.1\|41089_42094_+	ParB N-terminal domain-containing protein	A0A1I9KFW9	Aeromonas_phage	2.7e-11	33.8

DBSCAN-SWA_3

45199 : 46237

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000818955.1\|45199_46237_+	hypothetical protein	A0A0A7NPX4	Enterobacteria_phage	3.6e-43	35.0

DBSCAN-SWA_4

60920 : 62705

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042634277.1\|60920_62705_+	ATP-dependent helicase	S5M596	Bacillus_phage	3.5e-22	26.7

DBSCAN-SWA_5

82142 : 127688

Escherichia_phage(23.08%)

transposase,protease,integrase

attL 77091:77104|attR 89608:89621

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
77091:77104	attL	NA	NA	NA	NA
WP_012478345.1\|82142_83117_+\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
WP_049589868.1\|83312_84938_+	phosphoethanolamine--lipid A transferase MCR-1.1	NA	NA	NA	NA
WP_039003037.1\|85009_85732_+	PAP2 family protein	NA	NA	NA	NA
WP_001424615.1\|85898_86102_+	hypothetical protein	NA	NA	NA	NA
WP_000795947.1\|86123_87299_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001285422.1\|87469_87682_+	hypothetical protein	NA	NA	NA	NA
WP_001232449.1\|88042_89125_+	hypothetical protein	NA	NA	NA	NA
WP_001284313.1\|89291_90791_-	kinase	NA	NA	NA	NA
89608:89621	attR	NA	NA	NA	NA
WP_000081622.1\|90816_92454_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_001253653.1\|92453_93494_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001253658.1\|93579_94218_-	VWA domain-containing protein	NA	NA	NA	NA
WP_000116681.1\|94217_94859_-	TerD family protein	NA	NA	NA	NA
WP_001388628.1\|94881_95520_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001176767.1\|95982_96450_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_000506887.1\|96467_97676_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_000797366.1\|97686_98643_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_042634304.1\|98642_99722_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1
WP_001040059.1\|99723_100497_-	hypothetical protein	NA	NA	NA	NA
WP_001285478.1\|100489_101632_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	1.7e-30	35.4
WP_001035162.1\|101641_102700_-	hypothetical protein	NA	NA	NA	NA
WP_042634303.1\|103023_103605_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_001054787.1\|103604_104762_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_000007448.1\|104784_105240_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_062914744.1\|105262_106303_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116677.1\|106351_106930_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	3.3e-06	40.0
WP_000301242.1\|106997_107573_+	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_001053338.1\|108001_109243_+	tellurium resistance protein TerF	NA	NA	NA	NA
WP_000077926.1\|109805_110087_-	hypothetical protein	NA	NA	NA	NA
WP_000398480.1\|110136_110328_-	hypothetical protein	NA	NA	NA	NA
WP_001371937.1\|110419_110791_-	hypothetical protein	NA	NA	NA	NA
WP_000341066.1\|111133_111526_+	hypothetical protein	NA	NA	NA	NA
WP_024136327.1\|112129_112423_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088046.1\|112427_113753_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_000134171.1\|113813_114020_+	hypothetical protein	NA	NA	NA	NA
WP_000985911.1\|114121_114532_+	hypothetical protein	NA	NA	NA	NA
WP_053276223.1\|114544_115360_+	HNH endonuclease	G0X580	Salmonella_phage	1.9e-15	35.4
WP_001043843.1\|115613_116039_+	hypothetical protein	NA	NA	NA	NA
WP_001224687.1\|116587_116896_+	hypothetical protein	NA	NA	NA	NA
WP_000784387.1\|116911_117769_+	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
WP_152921942.1\|118617_119085_-	DUF4158 domain-containing protein	A0A1B0V7H9	Salmonella_phage	4.9e-08	47.2
WP_063120614.1\|119742_120876_-	permease	NA	NA	NA	NA
WP_001175593.1\|120981_121305_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001067858.1\|121847_122552_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_032193599.1\|122581_123286_+	replication initiation protein	I3WF20	Macacine_betaherpesvirus	6.4e-20	28.7
WP_000427623.1\|123858_124863_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000105383.1\|125280_126717_-	glutathione synthase	NA	NA	NA	NA
WP_001067855.1\|126983_127688_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_6

131026 : 188513

Escherichia_phage(43.75%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001389365.1\|131026_131791_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001067858.1\|131958_132663_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000490638.1\|132980_133646_-	hypothetical protein	NA	NA	NA	NA
WP_001426317.1\|133703_134084_-	hypothetical protein	NA	NA	NA	NA
WP_000193209.1\|134726_135545_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001572381.1\|135541_136747_+	hypothetical protein	NA	NA	NA	NA
WP_000078514.1\|137026_138346_-	DUF1173 family protein	NA	NA	NA	NA
WP_000833382.1\|138596_140024_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
WP_001572389.1\|140238_140754_+	thermonuclease family protein	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
WP_000975182.1\|140756_141653_+	hypothetical protein	NA	NA	NA	NA
WP_015059496.1\|141874_142108_+	hypothetical protein	NA	NA	NA	NA
WP_001572393.1\|142769_143000_+	hypothetical protein	NA	NA	NA	NA
WP_000185304.1\|143336_143798_+	hypothetical protein	NA	NA	NA	NA
WP_000074418.1\|143827_144235_+	hypothetical protein	NA	NA	NA	NA
WP_029698059.1\|144285_144603_-	hypothetical protein	NA	NA	NA	NA
WP_031613424.1\|144979_145330_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|147019_147724_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071448054.1\|147729_148476_+	winged helix family transcriptional regulator	NA	NA	NA	NA
WP_014839979.1\|148475_148994_+	hypothetical protein	NA	NA	NA	NA
WP_014839980.1\|148998_149415_-	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
WP_001617865.1\|150026_150902_-	class A extended-spectrum beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	6.1e-153	99.6
WP_014342101.1\|150881_151004_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|151204_151909_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001199192.1\|152022_152799_+	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA
WP_000742814.1\|153027_154053_+	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
WP_000602738.1\|154474_155227_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
WP_006581703.1\|157037_157523_+	hypothetical protein	NA	NA	NA	NA
WP_085940648.1\|157719_158810_-\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_110826437.1\|158899_159715_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	1.3e-08	27.2
WP_000251875.1\|159801_160104_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001445143.1\|159997_160249_-	hypothetical protein	NA	NA	NA	NA
WP_015344975.1\|160279_161773_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001255015.1\|161884_162190_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000214122.1\|162217_163432_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001447541.1\|163648_164533_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_015344975.1\|164563_166057_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001255015.1\|166168_166474_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000214122.1\|166501_167716_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001447541.1\|167932_168817_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|169418_170123_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|172546_173251_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001398199.1\|174561_174963_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_000557619.1\|174895_175153_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|175245_175899_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000774297.1\|176837_177695_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001324615.1\|177687_178182_-	hypothetical protein	NA	NA	NA	NA
WP_001442103.1\|178162_178237_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_000083845.1\|178468_178726_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_001312851.1\|179009_179159_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001299730.1\|179839_180052_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_000139315.1\|180187_180748_-	fertility inhibition protein FinO	NA	NA	NA	NA
WP_000704513.1\|180850_181711_-	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	9.7e-10	23.5
WP_000205749.1\|181769_182516_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	8.7e-07	29.7
WP_000986962.1\|182535_187806_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_000450520.1\|187887_188115_+	toxin-antitoxin system antitoxin VapB	NA	NA	NA	NA
WP_000911313.1\|188114_188513_+\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA

DBSCAN-SWA_7

206869 : 207091

Vibrio_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278689.1\|206869_207091_-	conjugal transfer protein TraR	A2I309	Vibrio_virus	3.3e-07	40.8

DBSCAN-SWA_8

215191 : 216013

Yersinia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001234469.1\|215191_216013_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	4.4e-44	38.2

DBSCAN-SWA_9

219509 : 223557

Macacine_betaherpesvirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000290840.1\|219509_220049_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.2e-45	73.9
WP_032193435.1\|220282_220492_-	DUF1472 domain-containing protein	NA	NA	NA	NA
WP_000817028.1\|221419_222391_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	8.8e-169	96.6
WP_001238646.1\|222390_223557_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.6e-228	99.7

DBSCAN-SWA_10

234718 : 238877

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001318207.1\|234718_235099_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-26	55.0
WP_000968139.1\|236341_237199_-	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_001101723.1\|237195_238053_-	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000983710.1\|238049_238877_-	iron/manganese ABC transporter ATP-binding protein SitB	A0A1M7XV31	Cedratvirus	3.6e-14	27.0

DBSCAN-SWA_11

242772 : 258483

Macacine_betaherpesvirus(40.0%)

transposase,protease,integrase,bacteriocin

attL 231966:231982|attR 262832:262848

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
231966:231982	attL	NA	NA	NA	NA
WP_000361611.1\|242772_243750_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	4.6e-101	63.9
WP_001066954.1\|244034_244775_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.2e-24	57.6
WP_001312821.1\|244895_245084_-	hypothetical protein	NA	NA	NA	NA
WP_000175738.1\|245457_246366_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_000771475.1\|246428_247538_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_000280980.1\|247970_248924_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_001312823.1\|250196_250355_-\|transposase	transposase	NA	NA	NA	NA
WP_085949156.1\|250538_251751_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	6.0e-167	98.6
WP_001259759.1\|252932_253136_-\|bacteriocin	colicin V family bacteriocin	NA	NA	NA	NA
WP_014640552.1\|253113_253350_-	colicin V immunity protein	NA	NA	NA	NA
WP_001105066.1\|253813_254095_-	hypothetical protein	NA	NA	NA	NA
WP_012478345.1\|254540_255515_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
WP_001312845.1\|256295_257111_+\|bacteriocin	lipid II-degrading bacteriocin colicin M	NA	NA	NA	NA
WP_000864812.1\|257160_257514_-	colicin M immunity protein	NA	NA	NA	NA
WP_000016493.1\|257691_258483_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.7e-51	90.2
262832:262848	attR	NA	NA	NA	NA

DBSCAN-SWA_12

272117 : 274511

Salmonella_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000608644.1\|272117_273380_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_015387340.1\|273635_274511_+	class A extended-spectrum beta-lactamase CTX-M-55	A0A1B0VBP7	Salmonella_phage	2.4e-125	82.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029747

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029747_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029747_1

1927738-1927861

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029747_1

>merge|NZ_CP029747|1|1927738-1927861|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP029747|1|1|1927738-1927861|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029747.1\|WP_001361449.1\|1922587_1923226_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP029747.1\|WP_000534305.1\|1928175_1929432_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP029747.1\|WP_001361451.1\|1923289_1923958_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP029747.1\|WP_000190985.1\|1935433_1936459_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP029747.1\|WP_061092688.1\|1925561_1927172_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP029747.1\|WP_001070230.1\|1919825_1920452_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP029747.1\|WP_000102278.1\|1936757_1936847_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP029747.1\|WP_000587589.1\|1924743_1925556_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP029747.1\|WP_061092687.1\|1920472_1922575_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP029747.1\|WP_001174942.1\|1929472_1930846_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP029747.1\|WP_000269501.1\|1934504_1935437_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP029747.1\|WP_001295403.1\|1917191_1918604_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP029747.1\|WP_001182363.1\|1933180_1934392_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP029747.1\|WP_000212678.1\|1927297_1927603_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP029747.1\|WP_000098896.1\|1931741_1932890_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP029747.1\|WP_000493947.1\|1931060_1931702_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP029747.1\|WP_000007283.1\|1938327_1938909_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP029747.1\|WP_000528342.1\|1919160_1919370_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP029747.1\|WP_001070010.1\|1923954_1924740_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP029747.1\|WP_000701040.1\|1937012_1938182_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371

Protein	Function_ID	Function_description	E-value
NZ_CP029747.1\|WP_001361449.1\|1922587_1923226_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.48286e-120
NZ_CP029747.1\|WP_000534305.1\|1928175_1929432_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP029747.1\|WP_001361451.1\|1923289_1923958_+\|4Fe-4S-binding-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.27457e-75
NZ_CP029747.1\|WP_000190985.1\|1935433_1936459_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP029747.1\|WP_061092688.1\|1925561_1927172_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP029747.1\|WP_001070230.1\|1919825_1920452_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP029747.1\|WP_000587589.1\|1924743_1925556_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	6.83407e-174
NZ_CP029747.1\|WP_061092687.1\|1920472_1922575_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP029747.1\|WP_001174942.1\|1929472_1930846_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP029747.1\|WP_000269501.1\|1934504_1935437_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP029747.1\|WP_001295403.1\|1917191_1918604_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP029747.1\|WP_001182363.1\|1933180_1934392_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP029747.1\|WP_000212678.1\|1927297_1927603_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
NZ_CP029747.1\|WP_000098896.1\|1931741_1932890_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP029747.1\|WP_000493947.1\|1931060_1931702_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP029747.1\|WP_000007283.1\|1938327_1938909_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP029747.1\|WP_000528342.1\|1919160_1919370_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP029747.1\|WP_001070010.1\|1923954_1924740_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.00171e-162
NZ_CP029747.1\|WP_000701040.1\|1937012_1938182_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98

>NZ_CP029747.1|WP_000212678.1|1927297_1927603_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP029747.1|WP_061092688.1|1925561_1927172_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMIATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPGWSQCIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDQKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFDQM
>NZ_CP029747.1|WP_000587589.1|1924743_1925556_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATHPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP029747.1|WP_001070010.1|1923954_1924740_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP029747.1|WP_001361451.1|1923289_1923958_+|4Fe-4S-binding-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP029747.1|WP_001361449.1|1922587_1923226_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAGFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP029747.1|WP_061092687.1|1920472_1922575_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAIEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPGTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP029747.1|WP_001070230.1|1919825_1920452_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP029747.1|WP_000528342.1|1919160_1919370_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP029747.1|WP_001295403.1|1917191_1918604_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP029747.1|WP_000534305.1|1928175_1929432_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYSNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSETIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP029747.1|WP_001174942.1|1929472_1930846_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>NZ_CP029747.1|WP_000493947.1|1931060_1931702_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP029747.1|WP_000098896.1|1931741_1932890_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP029747.1|WP_001182363.1|1933180_1934392_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP029747.1|WP_000269501.1|1934504_1935437_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP029747.1|WP_000190985.1|1935433_1936459_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP029747.1|WP_000102278.1|1936757_1936847_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP029747.1|WP_000701040.1|1937012_1938182_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP029747.1|WP_000007283.1|1938327_1938909_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP029747_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029747_2

2538160-2538251

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029747_2

>merge|NZ_CP029747|2|2538160-2538251|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP029747|2|2|2538160-2538251|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029747.1\|WP_001001170.1\|2535601_2536192_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP029747.1\|WP_001143120.1\|2539291_2539519_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP029747.1\|WP_001361399.1\|2527674_2531637_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP029747.1\|WP_000209909.1\|2543983_2544583_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP029747.1\|WP_000191701.1\|2531676_2532315_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP029747.1\|WP_000420622.1\|2542606_2543527_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP029747.1\|WP_001297176.1\|2532602_2533694_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP029747.1\|WP_000979516.1\|2527410_2527620_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029747.1\|WP_001240620.1\|2536717_2538046_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP029747.1\|WP_001151437.1\|2538674_2539271_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP029747.1\|WP_001307100.1\|2533693_2534386_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP029747.1\|WP_001126780.1\|2534397_2534784_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP029747.1\|WP_001361402.1\|2534791_2535592_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP029747.1\|WP_000024560.1\|2543526_2543832_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP029747.1\|WP_001063150.1\|2544579_2547126_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP029747.1\|WP_000535338.1\|2541090_2542347_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP029747.1\|WP_001028079.1\|2536202_2536697_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP029747.1\|WP_001044284.1\|2539556_2540798_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP029747.1\|WP_001120126.1\|2548427_2549120_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP029747.1\|WP_001230244.1\|2547125_2548298_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992

Protein	Function_ID	Function_description	E-value
NZ_CP029747.1\|WP_001001170.1\|2535601_2536192_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.91729e-130
NZ_CP029747.1\|WP_001143120.1\|2539291_2539519_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP029747.1\|WP_001361399.1\|2527674_2531637_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP029747.1\|WP_000209909.1\|2543983_2544583_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.89272e-84
NZ_CP029747.1\|WP_000191701.1\|2531676_2532315_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP029747.1\|WP_000420622.1\|2542606_2543527_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP029747.1\|WP_001297176.1\|2532602_2533694_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP029747.1\|WP_001230244.1\|2547125_2548298_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP029747.1\|WP_001240620.1\|2536717_2538046_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP029747.1\|WP_001151437.1\|2538674_2539271_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP029747.1\|WP_001307100.1\|2533693_2534386_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.45431e-169
NZ_CP029747.1\|WP_001126780.1\|2534397_2534784_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP029747.1\|WP_001361402.1\|2534791_2535592_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	5.36737e-141
NZ_CP029747.1\|WP_000024560.1\|2543526_2543832_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP029747.1\|WP_001063150.1\|2544579_2547126_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP029747.1\|WP_000535338.1\|2541090_2542347_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP029747.1\|WP_001028079.1\|2536202_2536697_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	1.07082e-105
NZ_CP029747.1\|WP_001044284.1\|2539556_2540798_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP029747.1\|WP_001120126.1\|2548427_2549120_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	4.708e-137

>NZ_CP029747.1|WP_001240620.1|2536717_2538046_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPGFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRIDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVIHQEP
>NZ_CP029747.1|WP_001028079.1|2536202_2536697_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCIGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP029747.1|WP_001001170.1|2535601_2536192_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHLDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP029747.1|WP_001361402.1|2534791_2535592_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP029747.1|WP_001126780.1|2534397_2534784_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP029747.1|WP_001307100.1|2533693_2534386_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>NZ_CP029747.1|WP_001297176.1|2532602_2533694_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP029747.1|WP_000191701.1|2531676_2532315_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP029747.1|WP_001361399.1|2527674_2531637_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVELALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDERVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDGEAKTNIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPALIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP029747.1|WP_000979516.1|2527410_2527620_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP029747.1|WP_001151437.1|2538674_2539271_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP029747.1|WP_001143120.1|2539291_2539519_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP029747.1|WP_001044284.1|2539556_2540798_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGMVLLSSNVQAQTTPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVVAMEKELGKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKTNRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDTNGFCPMDKFDSVLNEAVK
>NZ_CP029747.1|WP_000535338.1|2541090_2542347_-|YccE-family-protein
MGSNIHGISCTANNYLKQAWHNIKKEHEKNQTYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECESLEKEFEEMQNDNDLSLFMRTLRTNGTEIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYGFMEYIESINACDDVFSEYCLEDENISVHPEQINTPGISDLDTGIDLSGISFIQSEINKTYELKYAPVDGDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKPTIEALVDAAFCDLREDVKTLFGVDLQSDNKIQGVGSHMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFKDNKKLLALDTDASDRIKAVKNFLAVLSDSICSSFIVTSNVASISLGNESFSTDEDLECGYLMNTSNHYDVYLPPELFAQAYKLNNKERNAQLDYLTRYAI
>NZ_CP029747.1|WP_000420622.1|2542606_2543527_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFEPRKDWGKA
>NZ_CP029747.1|WP_000024560.1|2543526_2543832_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP029747.1|WP_000209909.1|2543983_2544583_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNKLETKIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGSVPARRIDSLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP029747.1|WP_001063150.1|2544579_2547126_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSNTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLMKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYQGYSSTIPIARFVDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP029747.1|WP_001230244.1|2547125_2548298_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP029747.1|WP_001120126.1|2548427_2549120_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPLTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029747_2	2.1\|2538186\|40\|NZ_CP029747\|CRISPRCasFinder	2538186-2538225	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP029747_1	1.1\|1927781\|38\|NZ_CP029747\|CRISPRCasFinder	1927781-1927818	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947

1. spacer 2.1|2538186|40|NZ_CP029747|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 1.1|1927781|38|NZ_CP029747|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

956377 : 1014830

Enterobacteria_phage(48.21%)

protease,tRNA,head,tail,holin,integrase,lysis,capsid,terminase,portal

attL 966528:966574|attR 1015253:1015299

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|956377_957763_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143508.1\|957798_958320_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|958427_958640_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729155.1\|958641_959508_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|959979_960522_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988384.1\|960740_961433_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001361257.1\|961463_964073_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691076.1\|964085_965093_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001255235.1\|965103_965619_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805414.1\|965621_966254_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
966528:966574	attL	NA	NA	NA	NA
WP_061092788.1\|966587_967751_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.7e-198	86.0
WP_000446905.1\|967606_967978_-	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
WP_000488407.1\|967949_968228_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000763385.1\|968275_968494_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_001386642.1\|968592_968874_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_032255841.1\|968884_969442_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	3.2e-62	62.9
WP_045173744.1\|969438_969597_-	DUF1317 family protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-23	98.1
WP_024228451.1\|969593_970274_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
WP_052953584.1\|970270_971056_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	2.4e-148	99.6
WP_000995439.1\|971061_971358_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_061092790.1\|971433_971640_-	hypothetical protein	K7P6H3	Enterobacteria_phage	4.2e-28	85.3
WP_061092791.1\|972195_972513_-	hypothetical protein	NA	NA	NA	NA
WP_061092792.1\|972644_972914_-	hypothetical protein	A0A2H4FNC7	Salmonella_phage	4.8e-32	75.3
WP_061092793.1\|972994_973750_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	4.7e-93	75.4
WP_001067459.1\|973788_974019_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	8.5e-22	68.0
WP_061092794.1\|974100_974640_+	regulator	M9NZI6	Enterobacteria_phage	7.5e-61	65.6
WP_061092802.1\|974726_975656_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	4.7e-111	68.4
WP_001566186.1\|975652_976354_+	replication protein P	A0A0P0ZD31	Stx2-converting_phage	7.9e-127	97.0
WP_000145912.1\|976350_976653_+	protein ren	A0A0N6WES4	Escherichia_phage	2.6e-42	94.6
WP_001070442.1\|976720_977053_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_032139864.1\|977144_977252_+	hypothetical protein	NA	NA	NA	NA
WP_000709069.1\|977309_978836_+	recombinase family protein	Q3HQV4	Burkholderia_phage	6.1e-31	27.7
WP_001567061.1\|978947_979265_+	hypothetical protein	NA	NA	NA	NA
WP_000068668.1\|979469_980399_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	3.0e-57	40.0
WP_001309322.1\|980497_980599_+	hypothetical protein	NA	NA	NA	NA
WP_001053033.1\|980595_981051_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.7e-61	67.5
WP_000224919.1\|981050_981221_+	NinE family protein	NA	NA	NA	NA
WP_000774488.1\|981213_981504_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.3e-47	94.8
WP_001099712.1\|981500_981863_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_032139865.1\|981859_982000_+	YlcG family protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
WP_001205470.1\|982084_982441_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.3e-58	92.0
WP_000150292.1\|982420_983635_-	hypothetical protein	NA	NA	NA	NA
WP_000355468.1\|983637_984813_-	hypothetical protein	NA	NA	NA	NA
WP_001120496.1\|985104_985431_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	1.2e-56	99.1
WP_001518397.1\|985434_985911_+	glycoside hydrolase family protein	K7PKX1	Enterobacterial_phage	9.5e-84	96.1
WP_001228695.1\|986127_986310_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738423.1\|986400_986694_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001307652.1\|987056_987251_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000453566.1\|987639_988185_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
WP_001518400.1\|988159_990085_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000198149.1\|990081_990288_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001518401.1\|990284_991886_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.1e-309	99.1
WP_001518402.1\|991866_993186_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	4.8e-234	98.6
WP_001299443.1\|993195_993528_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
WP_000063252.1\|993583_994609_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.9e-191	99.1
WP_001518405.1\|994650_995049_+	hypothetical protein	A0A0K2FIR1	Enterobacteria_phage	5.2e-51	84.1
WP_000752994.1\|995060_995414_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_001518407.1\|995425_996004_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
WP_000683145.1\|996000_996396_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.3e-70	100.0
WP_001518408.1\|996403_997144_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.4e-126	95.5
WP_001518409.1\|997159_997582_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	7.7e-69	95.0
WP_001518410.1\|997608_997998_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	3.4e-55	98.1
WP_001567091.1\|997990_1000552_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	99.2
WP_000847401.1\|1000548_1000878_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	6.0e-53	92.7
WP_001518412.1\|1000877_1001576_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.9e-130	97.4
WP_024177847.1\|1001580_1002324_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.8e-145	96.0
WP_000090882.1\|1002260_1002863_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.2e-88	85.1
WP_061092795.1\|1002923_1006403_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.2
WP_001228252.1\|1006470_1007070_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	3.4e-102	92.5
WP_061092796.1\|1007134_1009507_+\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	7.9e-163	68.8
WP_061092797.1\|1009506_1009788_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	2.7e-17	47.8
WP_000235975.1\|1009797_1010502_+	hypothetical protein	A0A1X7QGH6	Escherichia_phage	5.4e-59	62.3
WP_016245272.1\|1010512_1010806_+	hypothetical protein	NA	NA	NA	NA
WP_000239881.1\|1010998_1011667_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001226375.1\|1012205_1013690_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_061092798.1\|1013876_1014830_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
1015253:1015299	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1369640 : 1379082

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569365.1\|1369640_1370567_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8
WP_000783133.1\|1370571_1371303_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1371283_1371391_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|1371450_1372182_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001334139.1\|1372403_1374089_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
WP_001308766.1\|1374085_1374805_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001361590.1\|1374851_1375322_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.5e-81	99.4
WP_001296231.1\|1375362_1375824_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001361589.1\|1375948_1377949_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	94.9
WP_001292746.1\|1377945_1379082_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	5.9e-164	98.4

DBSCAN-SWA_3

1491225 : 1502483

Acanthocystis_turfacea_Chlorella_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000026026.1\|1491225_1492242_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	6.3e-77	44.3
WP_000699784.1\|1492310_1493318_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_000335121.1\|1493328_1494450_+	GDP-mannose 4,6-dehydratase	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	2.2e-131	64.7
WP_000163129.1\|1494453_1495419_+	GDP-L-fucose synthase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	9.9e-88	51.7
WP_001042472.1\|1495421_1495877_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_001361571.1\|1495888_1497274_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.9e-47	29.5
WP_000868618.1\|1497357_1498104_+	glycosyltransferase	A0A1V0SAH6	Catovirus	2.1e-08	41.6
WP_000736848.1\|1498128_1499499_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.4e-32	28.4
WP_000043484.1\|1499662_1501069_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.4e-37	28.3
WP_000704860.1\|1501316_1502483_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	1.7e-110	52.2

DBSCAN-SWA_4

1549615 : 1588852

uncultured_Caudovirales_phage(44.44%)

plate,transposase,integrase

attL 1543124:1543183|attR 1560436:1560517

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1543124:1543183	attL	NA	NA	NA	NA
WP_061092889.1\|1549615_1549870_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	1.7e-15	61.2
WP_157930104.1\|1549866_1550478_-	hypothetical protein	NA	NA	NA	NA
WP_061092891.1\|1550940_1551276_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_085949836.1\|1551279_1552493_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
WP_077252459.1\|1552640_1556729_+	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.5e-23	35.6
WP_061093069.1\|1556739_1557081_+	hypothetical protein	NA	NA	NA	NA
WP_077249107.1\|1557125_1557839_+	RHS repeat-associated core domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	8.2e-23	35.5
WP_052895708.1\|1557841_1558135_+	hypothetical protein	NA	NA	NA	NA
WP_016248851.1\|1558257_1558566_-	putative addiction module antidote protein	NA	NA	NA	NA
WP_021550960.1\|1558569_1558887_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.3e-11	41.9
WP_072693178.1\|1559010_1560273_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.5e-70	38.8
WP_061093028.1\|1560839_1561757_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
1560436:1560517	attR	NA	NA	NA	NA
WP_001011018.1\|1561858_1562809_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
WP_061093029.1\|1566876_1567710_-	DUF4225 domain-containing protein	A0A140XBD0	Dickeya_phage	3.0e-24	43.3
WP_061093030.1\|1567879_1569016_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_115314324.1\|1569123_1569498_-	RHS repeat protein	NA	NA	NA	NA
WP_061093031.1\|1569643_1570201_-	hypothetical protein	NA	NA	NA	NA
WP_061102077.1\|1570213_1571746_-	hypothetical protein	A0A2H4JFP5	uncultured_Caudovirales_phage	4.0e-22	34.0
WP_061093078.1\|1571969_1572497_-	hypothetical protein	NA	NA	NA	NA
WP_061093033.1\|1574249_1574543_-	hypothetical protein	NA	NA	NA	NA
WP_077249119.1\|1574562_1578981_-	DUF4150 domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	6.0e-23	33.7
WP_061093034.1\|1578983_1580165_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_061093035.1\|1580175_1582164_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_016159310.1\|1582377_1582896_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_061093036.1\|1583578_1584085_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_061093037.1\|1584104_1585589_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_061093038.1\|1585591_1586014_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_061093039.1\|1586018_1587842_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_061093053.1\|1587808_1588852_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_5

2928626 : 2941554

Escherichia_phage(83.33%)

integrase

attL 2934129:2934142|attR 2942599:2942612

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000368135.1\|2928626_2929559_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	2.1e-167	99.7
WP_000100042.1\|2930146_2930677_-	hypothetical protein	A0A2L1IV11	Escherichia_phage	3.3e-85	97.7
WP_001361862.1\|2930724_2938644_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV38	Escherichia_phage	0.0e+00	97.9
2934129:2934142	attL	NA	NA	NA	NA
WP_000243052.1\|2938668_2939289_-	LuxR family transcriptional regulator	A0A2L1IV08	Escherichia_phage	1.3e-117	99.0
WP_001181154.1\|2939606_2940236_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	5.4e-119	99.0
WP_001224627.1\|2940984_2941554_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	9.1e-49	52.2
2942599:2942612	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3318434 : 3408643

101

Burkholderia_virus(37.5%)

tRNA,tail,plate,integrase,transposase,capsid

attL 3357145:3357160|attR 3405974:3405989

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000568908.1\|3318434_3319484_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_001219237.1\|3319480_3319960_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_000246153.1\|3319959_3320670_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000517476.1\|3320688_3321000_-	cell division protein FtsB	NA	NA	NA	NA
WP_001246103.1\|3321193_3321517_-	DUF3561 family protein	NA	NA	NA	NA
WP_001173673.1\|3321566_3322172_-	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	4.2e-28	38.1
WP_001090363.1\|3322171_3323599_-	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	9.7e-31	31.4
WP_000372392.1\|3323600_3324509_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_000490426.1\|3324760_3325798_+	alkaline phosphatase isozyme conversion aminopeptidase	NA	NA	NA	NA
WP_000956458.1\|3325923_3326076_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_000039852.1\|3326340_3327075_-	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
WP_001290706.1\|3327148_3328861_-	assimilatory sulfite reductase (NADPH) hemoprotein subunit	NA	NA	NA	NA
WP_000211339.1\|3328860_3330660_-	NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA	NA	NA	NA
WP_000987944.1\|3330975_3331341_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_001361312.1\|3331418_3332690_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000109536.1\|3332680_3332941_+	ferredoxin family protein	NA	NA	NA	NA
WP_001130256.1\|3332957_3333533_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_001361313.1\|3333679_3334540_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_001361314.1\|3334536_3335316_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_000218268.1\|3335293_3336703_-	MFS transporter	NA	NA	NA	NA
WP_000059294.1\|3336724_3338179_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_001361315.1\|3338248_3339034_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-20	32.1
WP_001164562.1\|3339351_3340629_+	MFS transporter	NA	NA	NA	NA
WP_000039729.1\|3340655_3342134_+	sugar kinase	NA	NA	NA	NA
WP_001276284.1\|3342298_3343216_+	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000277206.1\|3343386_3344904_+	carbohydrate porin	NA	NA	NA	NA
WP_061092716.1\|3344964_3346335_+	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA
WP_032245922.1\|3346334_3347744_+	sucrose-6-phosphate hydrolase	F8WPR5	Bacillus_phage	5.6e-15	22.7
WP_001232705.1\|3347769_3348777_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001199974.1\|3348861_3349533_-	7-carboxy-7-deazaguanine synthase QueE	A0A2I7S8X1	Vibrio_phage	3.0e-14	25.0
WP_000944228.1\|3349705_3350308_+	LemA family protein	NA	NA	NA	NA
WP_001243483.1\|3350321_3351215_+	YgcG family protein	NA	NA	NA	NA
WP_001217974.1\|3351229_3352378_+	YgcG family protein	NA	NA	NA	NA
WP_089075444.1\|3352383_3353256_+	YgcG family protein	NA	NA	NA	NA
WP_000036723.1\|3353315_3354614_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.0e-131	58.8
WP_000210878.1\|3354700_3356338_-	CTP synthase (glutamine hydrolyzing)	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.8e-153	50.4
WP_001071641.1\|3356565_3357357_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
3357145:3357160	attL	NA	NA	NA	NA
WP_000254738.1\|3357428_3357764_-	endoribonuclease MazF	NA	NA	NA	NA
WP_000581940.1\|3357763_3358012_-	type II toxin-antitoxin system antitoxin MazE	NA	NA	NA	NA
WP_000226815.1\|3358089_3360324_-	GTP pyrophosphokinase	NA	NA	NA	NA
WP_000046818.1\|3360371_3361673_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	2.6e-38	29.8
WP_000186450.1\|3361729_3364486_+	two-component sensor histidine kinase BarA	A0A1V0SGX0	Hokovirus	6.4e-55	30.6
WP_000904922.1\|3364888_3365461_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_001529038.1\|3365532_3366006_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	8.1e-35	52.4
WP_001529037.1\|3366012_3366627_-\|tail	tail assembly chaperone	Q9MCR5	Enterobacteria_phage	1.7e-61	61.5
WP_096976434.1\|3366626_3368558_-	short-chain fatty acid transporter	A0A0K2FIZ6	Escherichia_phage	9.0e-40	44.4
WP_000138756.1\|3368560_3369139_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_001529034.1\|3369131_3370235_-	hypothetical protein	Q6QI99	Burkholderia_phage	1.4e-106	55.0
WP_000859116.1\|3370225_3370573_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.7e-34	61.5
WP_000148265.1\|3370627_3371224_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	5.4e-36	45.2
WP_001529032.1\|3371220_3372393_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	7.3e-85	47.1
WP_012602373.1\|3372380_3372596_-	membrane protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000458387.1\|3372592_3373477_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_001529030.1\|3373476_3376689_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	5.8e-84	31.3
WP_001202894.1\|3376764_3376923_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084213.1\|3376846_3377182_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000110114.1\|3377279_3377561_-	hypothetical protein	NA	NA	NA	NA
WP_000034294.1\|3377563_3378085_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
WP_000729834.1\|3378084_3379512_-\|tail	tail protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_012602372.1\|3379501_3379756_-	hypothetical protein	NA	NA	NA	NA
WP_021539012.1\|3379752_3380217_-	hypothetical protein	Q6QIB2	Burkholderia_phage	1.3e-37	51.0
WP_000271668.1\|3380216_3380663_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_000537457.1\|3380664_3381003_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286908.1\|3381012_3381966_-	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_001273074.1\|3381980_3383096_-	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_000135514.1\|3383310_3383769_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_000117556.1\|3383771_3384593_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	3.1e-98	61.5
WP_021512536.1\|3384573_3386070_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	6.1e-169	59.6
WP_000137893.1\|3386069_3387593_-	hypothetical protein	A4JWJ4	Burkholderia_virus	1.8e-184	62.5
WP_000533684.1\|3387589_3388132_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	4.9e-44	53.3
WP_000227704.1\|3388134_3388446_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	4.0e-30	60.6
WP_000175097.1\|3388445_3388772_-	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000270138.1\|3388768_3389422_-	hypothetical protein	A0A0S4L1H0	Pseudomonas_phage	4.3e-10	31.9
WP_001104438.1\|3389408_3390146_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.9e-63	59.5
WP_000793145.1\|3390148_3390499_-	membrane protein	A4JWP3	Burkholderia_virus	9.0e-23	53.9
WP_000194949.1\|3390629_3391373_+	hypothetical protein	NA	NA	NA	NA
WP_000972292.1\|3391348_3391753_-	hypothetical protein	NA	NA	NA	NA
WP_001069609.1\|3391751_3391967_+	hypothetical protein	NA	NA	NA	NA
WP_110826422.1\|3392158_3392923_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	4.0e-100	64.4
WP_029490538.1\|3393041_3393407_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_021518100.1\|3393495_3393684_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	1.8e-17	71.0
WP_029490537.1\|3393737_3394046_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	3.5e-23	55.9
WP_106631226.1\|3394056_3394974_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	2.4e-75	55.0
WP_061092904.1\|3394973_3395291_+	hypothetical protein	NA	NA	NA	NA
WP_110826423.1\|3395306_3397076_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	3.1e-228	69.6
WP_000960680.1\|3397086_3398253_+	AAA family ATPase	A4JWN1	Burkholderia_virus	9.7e-122	59.7
WP_000843446.1\|3398255_3398525_+	hypothetical protein	NA	NA	NA	NA
WP_001381528.1\|3398552_3399083_+	bacteriophage Mu Gam like family protein	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_042203510.1\|3399371_3399644_+	hypothetical protein	NA	NA	NA	NA
WP_000197789.1\|3399653_3399959_+	hypothetical protein	NA	NA	NA	NA
WP_000131939.1\|3399955_3400639_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	4.5e-34	36.9
WP_000631814.1\|3400635_3400866_+	hypothetical protein	NA	NA	NA	NA
WP_000123379.1\|3400855_3401071_+	hypothetical protein	NA	NA	NA	NA
WP_000988473.1\|3401060_3401513_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.6e-24	46.6
WP_001281696.1\|3401484_3401883_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	3.9e-30	55.9
WP_001571573.1\|3401997_3402630_+	hypothetical protein	NA	NA	NA	NA
WP_110826424.1\|3402978_3404244_-	glucarate dehydratase	NA	NA	NA	NA
WP_000211776.1\|3404264_3405605_-	glucarate dehydratase	Q6A202	Oenococcus_phage	9.1e-07	24.3
WP_000097082.1\|3405606_3406959_-	galactarate/glucarate/glycerate transporter GudP	NA	NA	NA	NA
3405974:3405989	attR	NA	NA	NA	NA
WP_000807747.1\|3407393_3407843_-	flavodoxin	NA	NA	NA	NA
WP_000889991.1\|3407860_3408643_-\|tRNA	tRNA pseudouridine(65) synthase TruC	NA	NA	NA	NA

DBSCAN-SWA_7

4414792 : 4419446

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061092936.1\|4414792_4415599_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	4.2e-47	42.1
WP_061092935.1\|4415614_4416253_-	aldolase	A0A077SK32	Escherichia_phage	6.6e-56	52.7
WP_061092934.1\|4416249_4417512_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.0e-93	45.8
WP_096427327.1\|4418168_4418372_+\|transposase	transposase	B6DZU5	Stx2-converting_phage	2.5e-33	100.0
WP_001339397.1\|4418421_4419099_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|4419098_4419446_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6

DBSCAN-SWA_8

4920907 : 4937399

Burkholderia_phage(35.29%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061092773.1\|4920907_4921699_+	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	2.0e-46	45.1
WP_061092772.1\|4921713_4922169_-	hypothetical protein	F6MIM0	Haemophilus_phage	2.3e-26	42.7
WP_061092771.1\|4922165_4922873_-	DUF4376 domain-containing protein	A0A0E3JQ06	Enterobacteria_phage	4.1e-14	42.4
WP_000135569.1\|4922869_4924450_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.3e-84	40.8
WP_000359520.1\|4924452_4925169_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.8e-22	37.2
WP_000951744.1\|4925161_4926277_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	6.9e-101	51.4
WP_001093498.1\|4926267_4926627_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	4.7e-35	64.2
WP_000679401.1\|4926725_4927427_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	4.9e-12	36.3
WP_001361462.1\|4927436_4928477_-	phage late control D family protein	A4JWL3	Burkholderia_virus	4.4e-73	44.8
WP_001269711.1\|4928464_4928674_-	membrane protein	A4JWL2	Burkholderia_virus	1.3e-16	60.3
WP_000271436.1\|4928673_4929627_-	chemotaxis protein	A4JWL1	Burkholderia_virus	3.3e-35	50.8
WP_015674804.1\|4932103_4932232_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000658214.1\|4932191_4932509_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907502.1\|4932559_4933084_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0
WP_000729835.1\|4933083_4934508_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	3.2e-191	70.4
WP_000875310.1\|4934497_4934695_-	hypothetical protein	NA	NA	NA	NA
WP_000404767.1\|4934691_4935147_-	hypothetical protein	NA	NA	NA	NA
WP_000777272.1\|4935291_4935606_-	membrane protein	Q5ZQY8	Pseudomonas_phage	9.2e-19	43.2
WP_000266448.1\|4935618_4936224_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	3.3e-57	57.1
WP_000758131.1\|4936226_4936514_-	membrane protein	Q6QIC8	Burkholderia_phage	1.5e-15	48.1
WP_000619864.1\|4937051_4937399_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	2.2e-21	49.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029748

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029747

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection