CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029788	Streptomyces actuosus strain ATCC 25421 chromosome, complete genome	16 crisprs	csa3,casR,DEDDh,WYL,cas4,Cas9_archaeal,cas3,Cas14u_CAS-V,DinG	0	12	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029788_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_1

1166428-1166510

Orphan

Consensus_repeat	Method
CGCGCCACCGTCGGCCGGGTGGTCCG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP029788_1

>merge|NZ_CP029788|1|1166428-1166510|CRISPRCasFinder
CGCGCCACCGTCGGCCGGGTGGTCCGGGGGGTTCGGGTGGGCTGCTGCCGCATGGTTGGCGTCGGCTGCGGCCGGGTGCTCCG

>NZ_CP029788|1|1|1166428-1166510|CRISPRCasFinder
CGCGCCACCGTCGGCCGGGTGGTCCG	GGGGGTTCGGGTGGGCTGCTGCCGCATGGTT
GGCGTCGGCTGCGGCCGGGTGCTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110626729.1\|1158748_1159933_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|99738
NZ_CP029788.1\|WP_110626727.1\|1154446_1155277_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|184875
NZ_CP029788.1\|WP_110626734.1\|1163409_1166400_-\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_CP029788.1\|WP_110626732.1\|1162360_1162843_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238779
NZ_CP029788.1\|WP_110626726.1\|1153706_1154306_+\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224996
NZ_CP029788.1\|WP_110626728.1\|1155484_1157068_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
NZ_CP029788.1\|WP_110636121.1\|1157313_1158675_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029788.1\|WP_110626740.1\|1170693_1171905_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP029788.1\|WP_110626737.1\|1168536_1169079_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_CP029788.1\|WP_110626733.1\|1162969_1163416_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP029788.1\|WP_110626735.1\|1166560_1167724_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|273178
NZ_CP029788.1\|WP_110626742.1\|1172481_1173306_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381357
NZ_CP029788.1\|WP_110626738.1\|1169075_1169909_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183518
NZ_CP029788.1\|WP_110626741.1\|1171964_1172387_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP029788.1\|WP_110626730.1\|1160030_1160519_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP029788.1\|WP_110636124.1\|1173739_1174849_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP029788.1\|WP_162655455.1\|1173317_1173677_-\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NZ_CP029788.1\|WP_110626739.1\|1170060_1170468_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP029788.1\|WP_110626736.1\|1167840_1168467_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP029788.1\|WP_110626731.1\|1160626_1162315_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110626729.1\|1158748_1159933_-\|PLP-dependent-transferase	gnl\|CDD\|99738	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.	3.78827e-122
NZ_CP029788.1\|WP_110626727.1\|1154446_1155277_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	4.70746e-28
NZ_CP029788.1\|WP_110626734.1\|1163409_1166400_-\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	9.40845e-70
NZ_CP029788.1\|WP_110626732.1\|1162360_1162843_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238779	cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.	8.22793e-54
NZ_CP029788.1\|WP_110626726.1\|1153706_1154306_+\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	9.02324e-29
NZ_CP029788.1\|WP_110626728.1\|1155484_1157068_+\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	2.37325e-160
NZ_CP029788.1\|WP_110636121.1\|1157313_1158675_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.0075e-06
NZ_CP029788.1\|WP_110626740.1\|1170693_1171905_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.40734e-97
NZ_CP029788.1\|WP_110626737.1\|1168536_1169079_-\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	1.08837e-43
NZ_CP029788.1\|WP_110626733.1\|1162969_1163416_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.20677e-39
NZ_CP029788.1\|WP_110626735.1\|1166560_1167724_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|273178	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD. All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely homologous to the MRE11 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	7.44637e-53
NZ_CP029788.1\|WP_110626742.1\|1172481_1173306_+\|aldo/keto-reductase	gnl\|CDD\|381357	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins. Escherichia coli DkgA/YqhE is a founding member of aldo-keto reductase family 5 member C2 (AKR5C2). DkgA/YqhE (EC 1.1.1.274), also called 2,5-DKG reductase A, or 2,5-DKGR A, or 25DKGR-A, or AKR5C, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG). It is also capable of stereoselective -keto ester reductions on ethyl acetoacetate and other 2-substituted derivatives.	1.07528e-155
NZ_CP029788.1\|WP_110626738.1\|1169075_1169909_-\|hypothetical-protein	gnl\|CDD\|183518	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.	6.30433e-09
NZ_CP029788.1\|WP_110626741.1\|1171964_1172387_+\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	1.07647e-30
NZ_CP029788.1\|WP_110626730.1\|1160030_1160519_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	8.13557e-36
NZ_CP029788.1\|WP_110636124.1\|1173739_1174849_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	6.69604e-80
NZ_CP029788.1\|WP_162655455.1\|1173317_1173677_-\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	7.20687e-15
NZ_CP029788.1\|WP_110626739.1\|1170060_1170468_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	2.866e-49
NZ_CP029788.1\|WP_110626736.1\|1167840_1168467_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	8.72845e-65
NZ_CP029788.1\|WP_110626731.1\|1160626_1162315_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	3.65598e-163

>NZ_CP029788.1|WP_110626734.1|1163409_1166400_-|SMC-family-ATPase
MRLHRLDITAFGPFGATQTVDFDALSAAGLFLLHGPTGAGKTSVLDAVCYALYGSVPGARQSAQGITLRSDHAAPGTRTEVTLDLTVAGRRLEITRQPPWERPKLRGKGMTTDKAQSWLREYDAAAGTWKDLSRSHQEIGEEITQLLGMSREQFCQVVLLPQGDFARFLRADAEARGRLLGRLFDTQRFADVEKRLAERRRTTEAQVRDGDAALLADAHRMQQAAGDAMELPELSPGEPGLAETVLGAAAVARATAREQLTVAHCRLAAAESAQAAADHALADARELARLQRRFTEAQERARRLEEDADTHRAAQARMDRARKAETVAPALELRDAAEAEHRRAAAAEARARALLPQSLADAGAAGLAAAARRAAEELGGLESARRAEQRLSDLLDERAGLDRQERADDDVLAEAESWLDGWDDRRAALQARIDTAQEAATRSEQLAGRREPAQQRLRAARLRDRLTGEADGAAAEERAARTRMLEAKAHWLDVRERRLNGIAAELAARLTDGEPCAVCGATEHPAPARKDAGHVDRAAEEQAHAAYQEAEEAHTARERRLGAVREELAAATAEAGDTPTAQLTREADELERQYAEARRAASALHAAHEELRRAEQEHERRTAARQQAQLRAASRAARRDTLDRERAALEGELAQARGGAASVAARAADLQRQAARFTDAADAARLAEDTAQRLKDADARLADAAFRAGFDTPQAAADALLDDAGHRELQRRLDARHTEEAAVRAILAEADTASAARRPPAALADAEEAASAAAGRLREAASARDAAARRCAELDRLSERATASVRRLAPLREEYDRVARLAALTAGTSADNERRMRLESYVLAARLEQVAAAATARLQRMSSGRYTLVHSDDRTGRGRSGLGLHVVDAWTGRERDTATLSGGETFFASLALALGLADVVTDEAGGVRLDTLFIDEGFGSLDDQTLDEVLDVLDSLRERDRSVGIVSHVPDLRRRIHAQLEVVKGRSGSVLRQRGH
>NZ_CP029788.1|WP_110626733.1|1162969_1163416_+|Lrp/AsnC-family-transcriptional-regulator
MTVFSPDATDWRILDVLQREGRASFAELARAVSMSPSAVTERVRRLEEAGVIQGYAAVVDPERLGLPILAFVRLRYPTGNYKPFHDLVAVTPEILEAHHVTGDDCFVIKVAARSMRHLEEVSGKIGALGSVTTSIVYSSPLPRRPLSQ
>NZ_CP029788.1|WP_110626732.1|1162360_1162843_-|rhodanese-like-domain-containing-protein
MTTTTTAANPVLRVAPAAPAEAAAYFRASLVFHADVSDVAAALAADGDPGFVVLDSRSTEAWDQGHVPGAVHLPTALIPEQAEQLLDKNVPVVTYCWGPGCNGATRAALALAELGYQVKEMLGGFEYWAREGFEFETWQGRERRDADPLTAPVDGDDCGC
>NZ_CP029788.1|WP_110626731.1|1160626_1162315_+|DUF885-domain-containing-protein
MSETKIPLPREVADAYVDELIALDPITGTYLGVAESSSRLPDTSPAGHEALAELARVTLAKLAEAERRPGGDSDAERRCARLLRERLTAELAVHEADELLRAVGNLHTAPHQIREVFTITPQETEEDWAAIAERLRAVPAAFAGYRESLALGLERKLYGAPRPTATFVGQLTEWADTGEGRGWFEDFAAAGPEALRAELDEAARAATAAVAELRDWMRDVYAPAVEGAPDSVGRERYGRLARYFTGADLDLDEAYAYGWAEYHRLRAEMEREAEKILPGAESPWAALAHLDEHGRHIEGVEEVRVWLQGLMDEAIRKLDGTHFDLAEPVKRVESCIAPPGGAAAPYYTAPTEDFSRPGRTWIPAMGRTRFPVYELVSTWYHEGVPGHHLQLAQWAYVAATLSRYQATVGGVSANVEGWALYAERLMDELGFLTDAEQRLGYLDAQMMRAVRVIVDIGMHLELEIPADSPFHPGERWTVDLAQEFFGRHSSLPADHVESELIRYLTMPGQAIGYKLGERAWLLGREKARERHGDAFDLKAWHMAALSQGSLGLDDLVAELSAL
>NZ_CP029788.1|WP_110626730.1|1160030_1160519_+|Lrp/AsnC-family-transcriptional-regulator
MAESVVLDPVDLHLLRLLQNDARTTYRDLAAQVGVAPSTCLDRVTRLRRSGVILGHKLRLDPARLGRGLQALLSVQVRPHRRELVGPFVERIRALPEALTVFHLTGPDDYLVHVAVADMADLQRLVLDEFTARREVARVETRLIFQQWDCGPLLPPGPAPSV
>NZ_CP029788.1|WP_110626729.1|1158748_1159933_-|PLP-dependent-transferase
METPVDTHRTATRALATEAVHAGRDDLARQGLHAPPIDLSTTYPSYDSRAEAARIDAFAATGAELEGPPVYARLGNPTVARFETALARLEGTEAAVAFASGMAALSAVLLARASMGLRHVVAVRPLYGCSDHLLTAGVLGSEVTWTDPAGIADALRADTGLVMVESPANPTLAEVDLRAVAHACGSVPLLADNTFATPVLQRPAEQGARLVLHSATKYLGGHGDVMAGVVACDEEFAGRLRQVRFATGGVLHPLAGYLLLRGLSTLPVRVRAASATAAELARRLAADPRVARVHYPRIGGAMVAFETHGDPHAVISGVRLITPAVSLGSVDTLIQHPASISHRIVDADDRRGAGVSDRLLRMSVGLEDVEDLWADLDQALAGAQVPAEAASAAR
>NZ_CP029788.1|WP_110636121.1|1157313_1158675_+|GNAT-family-N-acetyltransferase
MHHWRRDVVELAALFTAVAVADAVANLIGHGPDGPALLLISAVVLVATAAFHTWWARRHGHAPPTSDTGARPLPAAQPAGPDGRPDAGPSVLWRMRTTVRDEPGSLAALCTALADRRVDILSLQTHPLGETTVDEFLLRAPGDLAAADLTRAVAAAGGTGTWIERADAHDLVDAPTRLLGLATRTALDAAELPLALRQLLGRCTIRQSPATLAREGHGAQAVPVEGVLEDTVMRLRGPEGGVLTVERPYLPFTPTEFARARALVELDARLGPRVPVGQDVLTLPEGNAITVRRADPGDLEAAKAMHERCSARTLSMRYHGPVSDADRYLTHLLSPRFGRTLAVQTASGRIVGLGHLLWDGDETEVALLIEDDWQRRGIGGELLTRLVAMAVEAGCESVYAVTQASNTGMVAAMRGLGLPLDYQVEEGTLVITARLEAAPAARRLPYGEHIAQD
>NZ_CP029788.1|WP_110626728.1|1155484_1157068_+|alkaline-phosphatase
MSHRPLPGRRSVLRGSLAASAALTLPAGLGAAPAFALSGRPEAGWGVQAGDVTADSGLVWVRSDRPARMVVETSATESFRNPRRRLGPLLGADTDFTGTTRLRGLPPGEQIHYRVLLADPDDPRRTGEPVTGTFRTAPVRRRQGVRFVWSGDLAGQGWGINESIGGYRIFDAMAKLDPDFFLCSGDNIYADGPIPATAALPDGSLYRNVTTEEKAHVAVSLADYRGNFRYNLLDRALRRFNAQVPSIVQWDDHEVRNNWYPGEVIGTGTAYPAGTRLDDLAARARRAFAEYVPVSTLSGRPDGRIYRVVHHGPLLDVFVLDMRTYRNANSPDDQTTDPQGILGREQLEWLKRELSRSRAVWKVIASDMPLGLVVPDGVEGRPNFEAVAQGDPGAPLGRELQIAELLRFVKHRGITGTVWLTADVHHTSAQHYDPARAAFKDFAPFWEFVSGPLNAGAFPASALDGTFGPDRVFVKAPARANVSPAEGYQFFGEVDIDGDSGEMTVRLREQDGTVLFTKVLQPGRVGQ
>NZ_CP029788.1|WP_110626727.1|1154446_1155277_+|alpha/beta-fold-hydrolase
MSATVSFKVPSAHGPQAVTVSYTRRGRGEPLLLLHGIGHHRQAWDPVTDILAADRDVIAVDLPGFGVSPALPDGLAYDLPTTTAVFGAFCAALELDRPHVAGNSLGGLIALELGRARLVRSVTALSPAGFWSEAERRYAFGVLLAMRHIARRLPLPLVEQLSRSAAGRTALTSTIYARPARRSPEAVVAETRALAEAAGFAPTLRAGTTVRFTDDLAGLPVTVAWGTQDRLLLRRQGVRAKQLMPRARLVRLPGCGHCPMNDDPALVARVILDGSR
>NZ_CP029788.1|WP_110626726.1|1153706_1154306_+|NAD(P)-binding-domain-containing-protein
MVALGHEVTLGSRAKDNPVALDWARQAGGRAAAGTFAEAAAAAEVVVNAVGGRVALSALEAAGAQHLDGKVLIDVSNPLAFEEGQARLSPVESDSVAEQIQRAFPHARVVKTLNTVNCQVMVDPGRVPGEHVLFVCGEDAEAKEQVTALLGEFGWPAGRVLDLGGIREARAVEMWLPLWLSLFRAFGHADFNLELRRAR
>NZ_CP029788.1|WP_110626735.1|1166560_1167724_-|exonuclease-SbcCD-subunit-D
MRLLHTSDWHLGRAFHRAPMLDAQAGFVDHLVTTVRERGVDAVVVSGDVYDRAVPPLSAVELFDDALHRLAALGVPTVMISGNHDSARRLGVGAGLIGRAGIHLRTDPAACGTPVVLQDSFGDVAFYGLPYLEPALVKDEFGVDKAGHEAVLAAAMERVRADLAGRAPGTRSVVLAHAFVTGGQPSDSERDITVGGVASVPAGVFDGVDYTALGHLHGCQTITDRVRYSGSPLPYSFSEAGHRKTMWLVDLGADGSLTAERVDCPVPRPLARLRGTLEDLLADPALAEHEEAWVEATLTDPVRPADPMARLAERFPHTLSLVFDPDRAPDDPGVSYARRLAGRSDQQIAEDFVAHVRGAGPDSHEQAILRDAFDAVRADDAVREVAR
>NZ_CP029788.1|WP_110626736.1|1167840_1168467_-|YigZ-family-protein
MQDEYRTIARAGVHETEVNRSRFLCALAPAASEQEAQEFIAAVRKEHADATHNCWAYVIGADAAVQKASDDGEPGGTAGVPMLQMLLRRDMRYVVAVVTRYYGGVKLGAGGLIRAYGGAVGEALDALGTLTRRRYRLATVTVDHQRAGKVQNDLRATGREVRDVRYGEAVTLEIALPDADVDAFRAWLADATAGTAAFELGGEAYGDA
>NZ_CP029788.1|WP_110626737.1|1168536_1169079_-|histidine-phosphatase-family-protein
MTARAGTGPLRRLVVLRHAKSARPEDVNDHERPLARRGRRDAPAAGRALAAADRLPDLAVCSTAVRARRTWELASAEWGTPPPVRYDPRLYGADAPTLLDVARETPPETGTLLLVGHNPGLADLVLALAGHALDDTLDRVRAKFPTSAIAVLTWYGPTWSALHPGAALLTAVEVPRGGKH
>NZ_CP029788.1|WP_110626738.1|1169075_1169909_-|hypothetical-protein
MLRITDDRTGESVEAAPVRRGLTRVEAHAPGWDAGALRVLLVADLLVRALELGGTPVWALLNAERQRAELRAGAAALGIRPLEDSHDTTTGLGEAQIVHVAQDPATAPGGVLVRVGPVVASPWASTAPGDRDGVVGRGGPVPGDPGGVAGPGGSVPGAWGGGVDPTTVRLALLSVPRGAPVRLDDASLGAAGETLARWRRAVADWARRPSRPIPDDVRARLRAAWEDDLDIPAVLSVLRGVEEAAPDELPDGARFETFVYADRLLGLDLARDLGAPA
>NZ_CP029788.1|WP_110626739.1|1170060_1170468_+|CoA-binding-protein
MYGDDATIRKILTELGDTWAVVGLSSNQGRAAYGVAAVLQRYGKRVVPVHPKAETVHGEQGYASLADIPFDVDVVDVFVNSDLAGAVADEAVAKGAKAVWFQLGVIDEDAYARTRAAGLEMVMDRCPAIEIPRLG
>NZ_CP029788.1|WP_110626740.1|1170693_1171905_+|MFS-transporter
MPLALLALAIGAFGIGTTEFVIMGVLPEVADDFGVTIPTAGWLVSGYALGVVFGAPLLTVLGTKVSRKKMLMFLMALFVVGNALSALAPAFGLMLAGRIVASLAHGAFFGIGSVVAADLVAPQKKASAISLMFMGLTVANIVGVPLGTYIGQAAGWRVTFLLVAALGIVGLLGVAKLVPETGRPEGADVRAEFAAFRNVQVWLAMAMTVFGYGGVFAAITYITPMMTDVAGYSAGAVTWLLVLFGVGMFAGNLIGGRFADRALMPMLFGSLAALSLALLLFTATAHNKVLAAVTLTLIGALGFATVPPLQKWVLDQASAAPTLASAANIGAFNLGNALAAWLGGIVIAAGLGYTSPNWVGALLSGFALLLSFLAAFLHRRARTGGRVVTGSPAREAVPAAARH
>NZ_CP029788.1|WP_110626741.1|1171964_1172387_+|heme-binding-protein
MTTAPAIAPLTTTDAEVLLDAAHRAAEAAGVAVSVTVLDAGGHLLAFRRDDRALLISGETSTRKAYTALQLDSATADLVDAVKPDGPFHSLPTALDKPLLFIAGGLPVRRDGRPVGAIGVGGGAPEQDHAFAAAAVAALG
>NZ_CP029788.1|WP_110626742.1|1172481_1173306_+|aldo/keto-reductase
MTSVPTVTLNNGVEIPQLGFGVFQVPDAETTAAVTAVLQAGYRSVDTAAIYGNESGVGAALAASGLPREDLFVTTKLWNADQGYDATLRAFDDSLARLGLDHVDLYLIHWPAPGRDLYRESWKAIERLVADGRVRAAGVSNFQPAHLRRLLDGASLVPAVNQIELHPGLQQAELRALHAELGIATEAWSPLAQGAVLGDDAITAIAGRHGKSPAQVVLRWHLQLGTVVIPKSVTPARIRENIDVFDFSLSEEEMTAIAALDRDLRTGPHPDTLD
>NZ_CP029788.1|WP_162655455.1|1173317_1173677_-|metalloregulator-ArsR/SmtB-family-transcription-factor
MSARMHLSPARDAHPRTPGEEQFALAAELLALLGDRTRLALLHALASGEADVTTLTESCGAARPAVSQHLARLRLAGLVNTRKEGRRVIYSLRDGHLRRLVDEALNVADHRLSDRPLHD
>NZ_CP029788.1|WP_110636124.1|1173739_1174849_+|cation-transporter
MSDRHDHEHRHGEDHEHGHDHHHPDDGHHGHGQHQHSHGRTPGLRHRLAHLLTPHSHDTADKVDAALESSARGMRALWVSLAVLCVTALAQAVVVAASGSVALLGDTVHNAADALTAVPLGIAFVLGRRAATRRFTYGFGRAEDLAGLVVVLTIAASAAFSGWAAVVRLLDPRPVEHVPAVAVAALVGFAGNEWVARHRIRVGRSIGSAALVADGLHARTDGFTSLAVLVGAGGSALGWHLADPLVGLAITAAIALVLRDAAREVFRRVLDAVDPALVDRAERALAGVPGVRGVGELRLRWIGHRLRAEVAVVVDGEATVRQAHAIAVDAEHALLHAVPRLTAALVHADPAPAPGEPDPHLTLAHHATA

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Crispr_ID: NZ_CP029788_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_2

1182293-1182372

Orphan

Consensus_repeat	Method
CAGCAGCCGGGGTACCAGCAGCCGAACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_2

>merge|NZ_CP029788|2|1182293-1182372|CRISPRCasFinder
CAGCAGCCGGGGTACCAGCAGCCGAACCCCTACCAGCAGCAGCCCGGGTACCAGCAGCCCGGCTATCAGCAGCCGGGGTA

>NZ_CP029788|2|2|1182293-1182372|CRISPRCasFinder
CAGCAGCCGGGGTACCAGCAGCCGAACCC	CTACCAGCAGCAGCCCGGGTAC
CAGCAGCCCGGCTATCAGCAGCCGGGGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110626752.1\|1180689_1181127_-\|DUF4442-domain-containing-protein	unknown	unknown	gnl\|CDD\|373120
NZ_CP029788.1\|WP_110626755.1\|1184638_1185484_-\|spermidine-synthase-like-protein	unknown	unknown	gnl\|CDD\|223498
NZ_CP029788.1\|WP_110626751.1\|1180191_1180623_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133388
NZ_CP029788.1\|WP_110626757.1\|1186924_1187647_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|132881
NZ_CP029788.1\|WP_110626759.1\|1188023_1188608_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP029788.1\|WP_110626760.1\|1189749_1190511_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP029788.1\|WP_110626747.1\|1177050_1177851_-\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP029788.1\|WP_110626745.1\|1175487_1176060_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NZ_CP029788.1\|WP_110626761.1\|1190515_1191685_-\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NZ_CP029788.1\|WP_110636127.1\|1181211_1182150_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181433
NZ_CP029788.1\|WP_110626748.1\|1177959_1178481_+\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NZ_CP029788.1\|WP_110626762.1\|1191804_1192272_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP029788.1\|WP_110626754.1\|1183378_1184677_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP029788.1\|WP_110626746.1\|1176169_1177027_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|225308
NZ_CP029788.1\|WP_110626744.1\|1174868_1175426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240137
NZ_CP029788.1\|WP_110626758.1\|1187778_1188027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110626750.1\|1179337_1180132_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP029788.1\|WP_110626756.1\|1185494_1186664_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|237184
NZ_CP029788.1\|WP_110626749.1\|1178511_1179162_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP029788.1\|WP_110626763.1\|1192445_1193375_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|379468

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110626752.1\|1180689_1181127_-\|DUF4442-domain-containing-protein	gnl\|CDD\|373120	pfam14539, DUF4442, Domain of unknown function (DUF4442). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 139 and 165 amino acids in length. There is a conserved PYF sequence motif. There is a single completely conserved residue N that may be functionally important.	3.62904e-21
NZ_CP029788.1\|WP_110626755.1\|1184638_1185484_-\|spermidine-synthase-like-protein	gnl\|CDD\|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	5.05339e-15
NZ_CP029788.1\|WP_110626751.1\|1180191_1180623_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133388	cd01282, HTH_MerR-like_sg3, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	6.42902e-43
NZ_CP029788.1\|WP_110626757.1\|1186924_1187647_-\|DNA-alkylation-repair-protein	gnl\|CDD\|132881	cd07064, AlkD_like_1, A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this family, AlkC and AlkD from Bacillus cereus, are distant homologues and are composed of six variant HEAT (Huntington/Elongation/ A subunit/Target of rapamycin) repeats. HEAT motifs are ~45-amino acid sequences that form antiparallel alpha-helices, which are packed by a conserved hyrophobic interface and are tandemly repeated to form superhelical alpha-structures. AlkD and AlkC are specific for removal of 3-methyladenine (3mA) and 7-methylguanine (7mG) from the DNA by base excision repair. Homologues of AlkC and AlkD were also identified in other organisms.	2.54123e-103
NZ_CP029788.1\|WP_110626759.1\|1188023_1188608_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	4.1734e-18
NZ_CP029788.1\|WP_110626760.1\|1189749_1190511_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.80642e-24
NZ_CP029788.1\|WP_110626747.1\|1177050_1177851_-\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	1.45242e-44
NZ_CP029788.1\|WP_110626745.1\|1175487_1176060_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.6392e-19
NZ_CP029788.1\|WP_110626761.1\|1190515_1191685_-\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	5.14466e-179
NZ_CP029788.1\|WP_110636127.1\|1181211_1182150_+\|hypothetical-protein	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	0.000202715
NZ_CP029788.1\|WP_110626748.1\|1177959_1178481_+\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	1.77652e-83
NZ_CP029788.1\|WP_110626762.1\|1191804_1192272_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.69262e-28
NZ_CP029788.1\|WP_110626754.1\|1183378_1184677_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.09878e-48
NZ_CP029788.1\|WP_110626746.1\|1176169_1177027_+\|DMT-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	7.38214e-08
NZ_CP029788.1\|WP_110626744.1\|1174868_1175426_-\|hypothetical-protein	gnl\|CDD\|240137	cd04939, PA2301, PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	8.45253e-72
NZ_CP029788.1\|WP_110626750.1\|1179337_1180132_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	6.01112e-22
NZ_CP029788.1\|WP_110626756.1\|1185494_1186664_-\|elongation-factor-Tu	gnl\|CDD\|237184	PRK12736, PRK12736, elongation factor Tu; Reviewed.	0
NZ_CP029788.1\|WP_110626749.1\|1178511_1179162_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	5.02985e-41
NZ_CP029788.1\|WP_110626763.1\|1192445_1193375_-\|oxidoreductase	gnl\|CDD\|379468	pfam14100, PmoA, Methane oxygenase PmoA. This family is a putative methane oxygenase.	4.5694e-82

>NZ_CP029788.1|WP_110636127.1|1181211_1182150_+|hypothetical-protein
MWPGQQQPTGGTDPRQPNPYQQPGYHQANPYARQQPPPWQAPTVAAAPHGDGGRRAKVIAVTAAAAVVLAATVTGAVLLLGGGSDDEAAPGPATASVSPSASAPRNPRAGAGVRPTVPGWKAVVNADKGIAFDVPADWAPQSPDWVSYVSEDSDPDDKPLVAMKAPAVLKEKWCSDDTDRDGHVDDTSLASAGSRGNNGAKSAEEIARTDSAAWVYGAYTQPDHKKVTVGPVTSFTTASGLTGSLATAQSSGVERRHKCDSDGKATTFAFRTPDGGFASWSFVGAKGVEEEVPDATVRRILATVRLVRTGDS
>NZ_CP029788.1|WP_110626752.1|1180689_1181127_-|DUF4442-domain-containing-protein
MSIGEMLAATVPMARTLNLDFLETTPEKAVVALPDQSDYHNHVGGPHAGAMFTLGESASGAIVLAAFGDQLSRAVPLAVRAEIAYKKLAMGDVTATATLGRPAAEVVAELDAGERPEFPVAVEIRRGDGAVTGEMTVVWTLRPNG
>NZ_CP029788.1|WP_110626751.1|1180191_1180623_+|MerR-family-transcriptional-regulator
MRIGEMVRRTGVSERLLRYYEEQGLLTPERLPSGYRVYSEADVHTVRRIRILLAAGLPTATIARALPCLRDDDPSHLAPVCSGLVAELRRERERITRTIDDLRASRNLLDAVIEAGPDDTGAPDGAGARPDDTALFASGPSAA
>NZ_CP029788.1|WP_110626750.1|1179337_1180132_-|alpha/beta-fold-hydrolase
MTHALPLSTLGRVVRGTGPGLLLAHGAGGGIDANFGPVLDMLAARHTVVGPDYPGTGRTPRAGAPLSLDGLADELVATAVQEGVETFAIAGYSLGTAVAVRAAARHPERVTALVLTAGFAHPNPRFLLAARMWRDFLHAGDLAGLAGFLSLIGVSAPALDAVGQDDLDTALKNTAATVPPGTPDHLDLLLGHVDVRADLAQVAVPTLVVSTTLDQLVTPYHHRQLADGIPGARWAEIPTGHLPFAERPQEWGALLRDFLDEVRA
>NZ_CP029788.1|WP_110626749.1|1178511_1179162_-|DedA-family-protein
MHVQEWLDTVPAAAVYAVVGLVIGLESLGIPLPGEIVLVSAALLSSQHGGVNPVILGACASAGAVIGDSIGYAIGRKGGRPLLAWLGRKFPRHFSEGHVATAERSFQKWGMWAVFFGRFVALLRIFAGPLAGVLRMPYWKFLIANVLGGIIWAGGTTAVIYYVGVVAESWLKRFSWLGLVAAVLIGVASMLVVKRKAKQAQTAPQEAEPEPVAAAE
>NZ_CP029788.1|WP_110626748.1|1177959_1178481_+|gamma-carbonic-anhydrase-family-protein
MTHRALIRGIGGREPRIDENTFVAPTASVIGDVSLAEGASVWYGAVLRGDVERISVGAQSNVQDNCTLHADPGFPVTVGERVSIGHNAVVHGATVEDDCLIGMGATVLNGAVIGAGSLVAAQALVPQGMVVPPGSLVAGVPAKVRRELTEEERQGVTLNGTMYAELGKAHRDG
>NZ_CP029788.1|WP_110626747.1|1177050_1177851_-|acyltransferase
MPKRKNTFSSWRRRLAQRAVHAGWSWVQRTGSVSAEQPGRFRFGALGEATRLAFPLGTVFGEPWIHIGTHCIIAEQVTLTAGLMPDLDLGPDPILRIGNGVVLGRGSHVIADSTVTIGDDCYFGPYVYVTSTNHSYDDPHEPIGKQWPRFEPVEIGPGCWIGTGAVILPGARIGRNVVVAAGAVVRGTVPDHAVVAGAPARVVRRWTPDDGWQPPLRTPAPVPIPEDITPGQLRALSGLDEEQVARLASLGEDGAASLAELEPDGS
>NZ_CP029788.1|WP_110626746.1|1176169_1177027_+|DMT-family-transporter
MTALFALATSLLWGLADFGGGVLTRRAPALTVVVVSQTIATAVLGVIVVATGGWSEAGPRLWFAFAAGLVGPVAMICFYKALALGPMGVVSPLATLGVAVPVGVGLVLGERPGLVQVAGIGVAVTGVVLAGGPQRRGGGVQRQTVVLSLVSALGFGAVFALIAEASTTVTGLFLALFVQRVTNVAAGGLALYASVRRGAPALPAGGFPWASLPALAFVGLADVAANGTYSVAAQHGPVMVAAVLASLYPVVTALAARGFLSERLRAIQATGAGLALVGTLLLAAG
>NZ_CP029788.1|WP_110626745.1|1175487_1176060_-|helix-turn-helix-domain-containing-protein
MSDLDLLTQSLARNVKRWRTERGFTLDALAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITTLLDYEQGPKVRVVPADQAVRLWHTDAGSYNRLLAGAEAPGPLEMWDWLLTPGESSPSDPHPSGTVELVHVLAGELTLTVDGVKHRVPAGASASFEADAPHTYGNEGDEPMRMVMAVSVPPVR
>NZ_CP029788.1|WP_110626744.1|1174868_1175426_-|hypothetical-protein
MDAPIGDFDRATPAPDCLDELTAPVADAVRRWNGSVPADRILYVDTDPRWADTAVFVEHYGRELLEQSANCVVVAGRRAGETTLAACVALSTTRVDVNGVVRRRLGARKASFAPMETATSATGMEYGGITPLGLPAGWPVLVDAAVVDLPWVLVGSGRRRGKLLIPGKAFAELPDATVLEGLGVA
>NZ_CP029788.1|WP_110626754.1|1183378_1184677_+|MFS-transporter
MTTAADRSRRPRRPAWAGRNYSLLTAAAFLTNGGSQAALIASAFAVLEAGGDSGDVGLVAAARTLPLVLFLLIGGAVADRLPRHRVMVAANALNCVSQGVFAVLVLAGEPRLWQMMLLTALGGTGQAFFSPAAEGMLLSSVHGEQAGRAFAVFRMAMQGAALGGAALGGALVAAVGPGWVLAADAAAFAVAGALRSFLDVSHIPPRAPGAGLLADLREGWREFAGRPWLWGIVTQFAVANAVIGAADAVYGPLVARDHLGGAGPWGLALAFFGAGTVGGALLMTRWKPRRLLLAGTLCVFPMALPAAALAVPAPVGVLCAVMFTAGATVEVFGVSWMTALHQEIPEEKLSRVSAYDWFGSVALLPVATSLAGPAESAFGRTAALWGCAALVVVVTAAVLCVPDVRRLRRRTTTVVQGAAGSADAESPVGGLG
>NZ_CP029788.1|WP_110626755.1|1184638_1185484_-|spermidine-synthase-like-protein
MNEPIPVTRVTDHGTAKLMPDVDRDRAWLLTVDGAPQSYVDLDAPEHLEFEYARRLGHVLDTVAAPGRALDVLHLGGGALTLPRYVAATRPGSRQDVVEADRGLLELVAEQLPLPAGSRVALHAADARAWVGAAPDASADVLVADVFGGSRVPAHLTTLAYAREAERVLRADGVYVANLADGAPFAFLRSQLATFAEVFEELALIAEPGVLRGRRFGNAVLVASHRPVATADLARLTAADAFPARVEHGPALRRFTGDARPVTDADAVPSPEPPDGAFGIG
>NZ_CP029788.1|WP_110626756.1|1185494_1186664_-|elongation-factor-Tu
MSKTAYVRTKPHLNIGTMGHVDHGKTTLTAAITKVLAERGTGTFVPFDRIDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDGIMPQTAEHVLLARQVGVDHIVVALNKADAGDEELTDLVELEVRDLLTTHGYGGDAAPVVRVSGLKALEGDPRWTASIEALLDAVDTYVPMPERYLDAPFLLPVENVLTITGRGTVVTGAVERGTVRVGDRVEVLGAGVDTVVTGLETFGKPMQEAQAGDNVALLLRGVTRGAVRRGHVVAAPGSVAPSRRFTAQVYVLSAREGGRTTPVSTGYRPQFYIRTADVVGNIDLGAAAVARPGETVTMTVELGRDVPLETGLGFAVREGGRTVGAGTVTAVL
>NZ_CP029788.1|WP_110626757.1|1186924_1187647_-|DNA-alkylation-repair-protein
MTPADTAPPDVPPSALADTVLERLTATYAGAADPGRAASMRAYMKDVAPFLGIPTTDRRTLSRAVLAGTPRPDEADCTAIALRCWLLPEREYHYFAVDYLRRHTGRCSSAFLPVVRHLLTTVPWWDTVDLLAVHVVGPLVAADRQLTAVMDAWIADDDPWLVRTALLHQLRYKERTDTDRLFAYCLRRSGHPGFFVRKAIGWALREYAKTDPRAVRDFVARERDRFAPLTVREALKHLGE
>NZ_CP029788.1|WP_110626758.1|1187778_1188027_+|hypothetical-protein
MDRAPIIALVSFAGAEVCALLALWLRLRRRTLGERLRRRTVVDLAEAVVPGARLEWDERTGDGDRLRLRIVHAPAHEGDPAE
>NZ_CP029788.1|WP_110626759.1|1188023_1188608_+|sigma-70-family-RNA-polymerase-sigma-factor
MSDQDPLDGLDLPTAASAAPYGGCEELGRAARLLKDEQFSAFYRSVVRRLVGFLINQGATVPTAADIAQDSMIKAYRRWADLEDPRAWIHTVAARELVRRSASLREEPVESVPEATALLPRPDALGEWESRYALLPLLRALPPRQRQVLAWTLDGYTPDDIAGQLHISSDAVRSNLMKARRAVAQRLRNREEEL
>NZ_CP029788.1|WP_110626760.1|1189749_1190511_+|TVP38/TMEM64-family-protein
MLDATTRSGGTATASPPSAAAEIVVPVSVSLAARCTRALLSPWSRLSLLLVLLASAGAAVLLFEPQRLLTGGWPPQVGGAAAAVVFAVAYGLCTVAFVPRPLLNLAAGALFGSQAGLASALAGTVLGAGLAFGLGRVLGQDALRPLLRGRWLRAADGQLSRHGFRSMLAVRLFPGVPFWAANYCAAVSRMGYVPFLLATALGSVPNTAAYAVAGARASAPTSPAFLVALACIALPALAGVVVAWRKRHHLRGR
>NZ_CP029788.1|WP_110626761.1|1190515_1191685_-|thiolase-family-protein
MRDAVIVEAVRTPIGKGKPNGALAHIHPVELLAHTLRTLVERSGVDPALVDDVIGGTVDQVGEQAMNTTRYAVLSAGFPESVPATTVDRQCGSSQQAVHFAAQGVLSGAYDLVIACGVESMSRVPMWSNVPPGADPFGPGVAARYPEGLVPQGISAELISAKWSLTRERMDAFAVSSHHKAAAAWEQGLFDAEVAPLDGVARDECVRPGSTPEILAGLRPAYHDPAFAERFPQIEWNVTAGNASPINDGASAVLITSSETAARLGLRPLARLHSFAVTGSDPLLMLTGVIPATEKVLRRAGLDLADIDLFEVNEAFASVVLAWQQETGADLAKVNVHGGAIALGHPLGASGTRLTTTLVHAMRARGARYGLQTMCEAGGLANAMILEAV
>NZ_CP029788.1|WP_110626762.1|1191804_1192272_+|helix-turn-helix-transcriptional-regulator
MAATKDPRPCSIADTLALVGEKYSLLVLREVCLGNGRFDQLVRNIGAPRDVLATRLRRLVDAGILTKRVYSERPQRFEYRPTPAGLELEPLLMILKEWGDRHLRADDRPMVVEHACGHELVPLVTCAACGEEVRHEDLTAHPQSPGWTVSGPAAA
>NZ_CP029788.1|WP_110626763.1|1192445_1193375_-|oxidoreductase
MTAGPRLVHTLGERITVTDPATGVELLAYVYRPEAAWEAPKPYLHPLRTRAGDVVTDYRPNDHRWHKGLALTASHLSGANLWGGNTYVPGEGYLALPERVGSMAHAGFDEVGADGGRAVIAERLTWHPYGGELWAEERRRIEVHDIDAGSRSWALTWTSAVTNRREEPLRFGSPTTAGRELAGYTGLFWRGPRAFRGGRILGPDAEGPQLMGTQAPWLAFTGEHDGTDGHATLVFAHAPENDHTGAGGGHPAHWFVRNDPFAAVAPSWAFFEELELAPGDTLTRRYRVVVADGAWEREEIAGYLEAHPW

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029788_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_3

2568146-2568225

Orphan

Consensus_repeat	Method
GGTTGCCCGCGCAGTTCCCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_3

>merge|NZ_CP029788|3|2568146-2568225|CRISPRCasFinder
GGTTGCCCGCGCAGTTCCCCGCGGTGTGCCTGCGGCGGCCTGTGCGGGTGGGTGGGGGGTTGCTCGCGCAGTTCCCCGCG

>NZ_CP029788|3|3|2568146-2568225|CRISPRCasFinder
GGTTGCCCGCGCAGTTCCCCGCG	GTGTGCCTGCGGCGGCCTGTGCGGGTGGGTGGGG
GGTTGCTCGCGCAGTTCCCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110636385.1\|2555313_2556891_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110627917.1\|2562451_2562856_+\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|378159
NZ_CP029788.1\|WP_110627926.1\|2573842_2574469_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP029788.1\|WP_110627922.1\|2569668_2570250_-\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP029788.1\|WP_110627928.1\|2576303_2576651_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110627929.1\|2576654_2577299_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
NZ_CP029788.1\|WP_110636391.1\|2574974_2575199_-\|DUF2277-domain-containing-protein	unknown	unknown	gnl\|CDD\|378364
NZ_CP029788.1\|WP_110627915.1\|2556844_2558965_-\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|379588
NZ_CP029788.1\|WP_110627918.1\|2562871_2563357_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110627921.1\|2564725_2566771_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
NZ_CP029788.1\|WP_110627927.1\|2575320_2576220_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
NZ_CP029788.1\|WP_110636394.1\|2577386_2577725_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110627923.1\|2570667_2571312_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP029788.1\|WP_110627920.1\|2564221_2564716_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029788.1\|WP_110627916.1\|2561955_2562348_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|214578
NZ_CP029788.1\|WP_110627919.1\|2563362_2564049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110627925.1\|2573117_2573600_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP029788.1\|WP_110627924.1\|2571376_2573017_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|277335
NZ_CP029788.1\|WP_110636388.1\|2561283_2561955_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP029788.1\|WP_110627914.1\|2554678_2555104_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|380090

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110627917.1\|2562451_2562856_+\|DUF1992-domain-containing-protein	gnl\|CDD\|378159	pfam09350, DUF1992, Domain of unknown function (DUF1992). This family of proteins are functionally uncharacterized.	9.60065e-20
NZ_CP029788.1\|WP_110627926.1\|2573842_2574469_+\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.14533e-15
NZ_CP029788.1\|WP_110627922.1\|2569668_2570250_-\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	6.50278e-26
NZ_CP029788.1\|WP_110636391.1\|2574974_2575199_-\|DUF2277-domain-containing-protein	gnl\|CDD\|378364	pfam10041, DUF2277, Uncharacterized conserved protein (DUF2277). Members of this family of hypothetical bacterial proteins have no known function.	6.1079e-25
NZ_CP029788.1\|WP_110627929.1\|2576654_2577299_-\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	7.80361e-50
NZ_CP029788.1\|WP_110627921.1\|2564725_2566771_-\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.46955e-81
NZ_CP029788.1\|WP_110627915.1\|2556844_2558965_-\|DUF2029-domain-containing-protein	gnl\|CDD\|379588	pfam14378, PAP2_3, PAP2 superfamily.	7.23384e-45
NZ_CP029788.1\|WP_110636388.1\|2561283_2561955_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	8.78591e-55
NZ_CP029788.1\|WP_110627927.1\|2575320_2576220_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	5.23536e-56
NZ_CP029788.1\|WP_110627923.1\|2570667_2571312_+\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	2.97537e-11
NZ_CP029788.1\|WP_110627920.1\|2564221_2564716_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.27446e-15
NZ_CP029788.1\|WP_110627916.1\|2561955_2562348_-\|FHA-domain-containing-protein	gnl\|CDD\|214578	smart00240, FHA, Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.	0.00120895
NZ_CP029788.1\|WP_110627924.1\|2571376_2573017_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|277335	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	8.04538e-30
NZ_CP029788.1\|WP_110627925.1\|2573117_2573600_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	5.37209e-10
NZ_CP029788.1\|WP_110627914.1\|2554678_2555104_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|380090	pfam18013, Phage_lysozyme2, Phage tail lysozyme. This domain has a lysozyme like fold. It is found in the tail protein of various phages probably giving them the ability to degrade the host cell wall peptidoglycan layer.	0.000141898

>NZ_CP029788.1|WP_110627921.1|2564725_2566771_-|MFS-transporter
MAVEADTGPAAAASQQEHVPGNVLVSIGALLLGMLLAALDQTIVSTALPTIVSDLGGLEHLSWVVTAYMLASTAATPLWGKLGDQYGRKRLFQTAIVIFLIGSALCGMAQNMPQLIAFRALQGLGGGGLMVLSMAIVGDLVPPRERGRYQGLFGAVFGATSVLGPLLGGLFTEHLSWRWVFYVNLPVGVVALAVIAAVLHIPRKTTHHVIDYLGTLLIASVATCLVLVASLGGTTWAWDSPQIIGLAVLGVVLAVVFTVVERRAAEPVLPLKLFRIRTFTLSAVISFIVGFAMFGAMTYLPTFLQVVRGVTPTMSGVHMLPMVFGLLLSSTLSGQIVSRTGRWKVFPIAGTAVTAIGLLLLHQLDENSSTAEMSSYFFVFGLGLGLVMQVLVLIVQNAVSYEDLGVATSGATFFRSIGASFGVAIFGTVFASRLGDKLTDAFRGVRLPPGMSADALESDPRGISSLPPALRPAALHAYASSITDVFLYAAPVAALGFVLAWFLKEDRLRASVTAPDVTETLASNPVERSSYDEVCRALSVLGTREGRREVYRKITERAGYDLLPAASWLLLRIKKYGQVEPARLAEGGPVPLQVVLEAARQIEERRLARRDGVDLVLTDAGRATAARLAQAREESLAELLGDWWGTDRPTDLTQLVRLLNDELCGSRQERPQEARPPARLS
>NZ_CP029788.1|WP_110627920.1|2564221_2564716_+|GNAT-family-N-acetyltransferase
MPTWTIAPEAPGSPAALALWRAYYTEVSDRWYLLHEGRRTDPGELEREIAAESGDVLAPPHGRLLVARYGGEPAGTAGVRLLDAATAELKRVFLLPALRGRGGAALLVDAAERAARELGAERIVLDTRSDLVEARALYARLGYTETEPHNDDPYAEHWFGKRLT
>NZ_CP029788.1|WP_110627919.1|2563362_2564049_-|hypothetical-protein
MSTGVIIALIVIVAAVVLVAAALMLLRARRPHAGGNLKRRFGPEYDRTVARHDGDVKAAERELTERVQRHGALRERPLEPAERERYEARWAAAQERFVDAPREAVAEADRLLAEVAGARGFPDGGQYEEQLAALSVHHAGHVDGYRRVHRVARLGAGADGGAPGTEEMREAMLEARALFEDLLKASAQDTGRHRADRDEVRQTRDREAVPGRRGHLPWGLTHRHAKGS
>NZ_CP029788.1|WP_110627918.1|2562871_2563357_-|hypothetical-protein
MSDATRPIRDPLAPPAEGTPDARGETAVGTTAHGTATGSRPTTATTPGTGTGTGTGTDAGRARPHGSETPLLAREESEELEQRLTQAVTRFVDGPRDAVAEADRVLEEIAARFTEAVTRRRRTLRTTWQNTDDDAGGTADTEQLRLALRDYRELAQRLLDG
>NZ_CP029788.1|WP_110627917.1|2562451_2562856_+|DUF1992-domain-containing-protein
MSERKPPGVSFDSWTDKQIRDAAARGEFDRLPGAGKPLPSDVEADYDEQWWIKRKLAREGISVLPPTLALRKEAEDALVAAIAAPSERIARKIITDVNVKIRDMMFKPPPGPPLGMKPYDVEEVVRQWRERRAR
>NZ_CP029788.1|WP_110627916.1|2561955_2562348_-|FHA-domain-containing-protein
MLELTMATVSGTDAGATAGMLMADAPSEPGAVLRVGRDKAVCRLVAPEDWLFVSRAHLEFVCGPDGTWQLTWLRGSQPDPSSEVRLVMGEYAQPLVYGGTVPLPRGGAGEVVIQDRTGPRSVNVGFYHEV
>NZ_CP029788.1|WP_110636388.1|2561283_2561955_+|O-methyltransferase
MSSSQRWDDVDFYFSSHLAPDDDVLQAALRDSEAAQLPHVNVTAPQGKLLRLLAEMQGARTILEIGTLGGYSTIWLARALPADGRLISLEYSAKHAEIATRNIARAGLDKVVEVRVGPALESLPKLADENPPPFDLVFIDADKANNAHYVEWALRLTRAGSVIVVDNVVRGGRVADSDSTEPDIQGTRAAIELIAAHPRLSGTAIQTVGSKGYDGFALARVLA
>NZ_CP029788.1|WP_110627915.1|2556844_2558965_-|DUF2029-domain-containing-protein
MVNARHSGQPGQAFGATAVGAAGARLRALRLALWLVAALLAARQVDAVLGSPRGERLTDLETWVGPEGVLHVKGSLYDSTRFTGTPFGGLVLKPLTRAAEQALGWGWTFGTLLLVVALGLIAARALPQPVSRRTSLLAAPVAVSLLMLSLPVRNTLYLGQTSIMPVLLVLAGCFVVRGERAVGLCVGVAAALQPTVLMFTPLLWFTGRRTAALSTGVTFAACTLAAWVAMPHDSAAYWVHHLAGAGLGGPADDLANQSLHGALLRLGLAGPAEIALFLLLGAAVAVLGVRRAVRFARDGQLLLAVAITGCAAVAVSPTAWQHQLLWLLLAVVGRVGGRASDRYVWPVAVILVMTLPATMMLPNKPLFQPLIENLALLAAVAAATAVPFLSRTSPYFRDPVPTEYAAAPVPARWRHVPLVPALRRVLTRPNLLFELLLIRITYSAYARIRLAAAGDSNSAGRLRAEHHGQQILDLERFLHLDVEHWANHAVVRTPWLEDFLSFYYESFHFGVPLAILAVLYWRRPVDYRWARSAIGIATVLALAGFWLYPLAPPRLMPGLGIVDTVNGPQDFTQPDYGTLTELTNQYAAMPSLHFGWSLWCGLVILVLAPKWWMKALGLLHPFFTVCAIVGTGNHWVLDAVGGAAVVGLGFGLTYLVQGPRASTAARPARPKPVADTDADAVTDTHADAGAEVSSPRPGRAGNRTPS
>NZ_CP029788.1|WP_110636385.1|2555313_2556891_+|hypothetical-protein
MLRVLRLPRGRHRVPLLATLPVLPLYVLWWTVLATGGGDLAAQQAWAGFAARHGGSAYNLFWYGGMHTANYSLVSPYLMAALGVRTVTALSGLAATWAAAVLIGRAGVRRPLGPALLASLALWCDVASGRTTFALGVAFGLAGCVLLTGQRRTVLAAGYAALATMASPVAGLFLAVVGGGFLLVRDRGRALALLVPPAAVVGATTLLFPFTGEQLMPLARVWPPVLLGLAVTVLAPHGWRVARIGGAVYAAGTVLVYLLPSPIGTNVERFAELFAPAVLLAALLTVERTRRAARTLLVVALVFSVGWVGKKTADDLRVYTAVPAWAADTRPVVRALEGLGADRTRVEAVPARDHREAAALAPHVNLARGWNRQLDMERARLFYDGTFSAATYRAWLDRWAVGFVVLPLGRPDGYAEEEARLVREERPDWLEPVWQDAHWRVFRVRDAVPLVSAPGSVVRTSGADLRLRVSRPGAVTIRIAWSPWLRADGGCLSRDGEFTRLTVDAPGAYRISSEYGSLPGRGAGC
>NZ_CP029788.1|WP_110627914.1|2554678_2555104_+|transglycosylase-SLT-domain-containing-protein
MSVSRIVRRLAAPKKVLTTAAVAAATAGMALTAAPAHAAAASADSAAQAQAIAHKMIPDAAQYQAFSHIVEHESGWDVDATNSSSGAYGLVQALPGTKMASAGADWKTNAATQIKWGLDYMNSRYGSPVAAWNFWQANGWY
>NZ_CP029788.1|WP_110627922.1|2569668_2570250_-|TMEM165/GDT1-family-protein
MISLTVTALVFGVVFLAELPDKTALAGLVLGTRYRASYVFAGVAAAFALHVALAVAAGSVLTLLPQQLVHALTGVLFLGGAAMLLMKKDEDEEEVRRPENQSFLKVAGAGFMLILVAEFGDLTQIMTANLAARYDDPLSVGLGAVLALWAVAGLGIVGGKALMKRVPLALITKVAALLMLALGVWSLWEAVTG
>NZ_CP029788.1|WP_110627923.1|2570667_2571312_+|HNH-endonuclease
MPRFYARRRLSIAAAVTGLIASAAFFNAPGASAALPTPVSATTARSYLSQLTVATENRTGYSRDLFPHWITISGTCNTRETVLKRDGTNVVTDSSCAATSGSWYSPYDGATWTAASDLDIDHLVPLAEAWDSGASKWTTAQRQAFANDLTRPQLIAVTDDVNQAKGDQDPATWMPSRTTYRCTYVRAWVQVKYYYDLSVDSAEKTALTNYLANC
>NZ_CP029788.1|WP_110627924.1|2571376_2573017_+|alkaline-phosphatase-family-protein
MAGLRLGPLLRYTDGSSATVWVETSRPCTAEVRCADGAGGTARTFQVAGHHYALVPVSGLTAGTATAYEVLLDGNRVWPLPDSPLPPSVIHAPGADDVVRVAFGSCRWAAPPAGGTDPVGPDALDALATRIAADPGGERPDVLVLLGDQVYADETSEAVRRRIDARRGLSDPPGGEVADYEEYTWLYYESWLDPEVRWLLSTVPSCMIFDDHDVVDDWNTSAAWLADMRATDWWQERIVSGLMSYWVHQHLGNLSPAELDADPLYAAVRDTPDATDLLRAFATRADADPTSVRWSYRRDFGRVRLLMVDSRAARVLDEQRRAMLHPEEAAWLRAQALDAPGTCDHLLIGTSLPWLLPHLVHDVEAWNAVLCRGRKGARWARFGERLRRRADLEHWAAFPESFAALAGVIAEAGSVPDGPATVCVLSGDVHHAYAAEPSWPADSPAPAARVLQLTCSPVHNSVPLSIRLGFRFGWSAVARALGRRFARHAGCPPTAVTWRRTGGPWFGNQLMTLTLRGRAATLGLEQAGSDGTLRPVWLNVELASIN
>NZ_CP029788.1|WP_110627925.1|2573117_2573600_+|DoxX-family-protein
MTGRLDSAQPYVLGLFRIVTGLLFACHGAASLFGVLGGAAGGNGGTIPAGTWPGWYAAVIQLVCGGLVLLGLGTRAAALLASGSMAYAYFDVHQSMALWPLQNGGEASAMFCWAFFLLIFTGSGAFGLDRVVAGRLGASRGGDAGAGADADADARASAVA
>NZ_CP029788.1|WP_110627926.1|2573842_2574469_+|hypothetical-protein
MLESLGQVGALTASPWIYAVVAVSVLLDVFLPILPSGVLVIAAATAAAAGSAAGSGAARGDVPDVLFLILSAATASVVGDLVAYRLAWRGGPRLDRALARSRRLRSAQERLGAALARGGGALVVLARFAPAGRSVVSFTAGVLHRRARDFLPWSALAGLSWAAYSTALGYFGAHWLGTRWLATLVSLAALFAAGAGAGYWMRRRPAEA
>NZ_CP029788.1|WP_110636391.1|2574974_2575199_-|DUF2277-domain-containing-protein
MCRSIKTLRPPALPEEATEEEIRAAALQYVRKVSGFRAPAAHNQEVFEQAVEAIAEATAELLGGLEVRGAAARR
>NZ_CP029788.1|WP_110627927.1|2575320_2576220_+|2-dehydropantoate-2-reductase
MGKKNLTVAVLGPGGIGGLLAALLSRAGHRVICLAGEATAETLRTQGIRVRSGRFGDFTVPVEADGELREPVDAVLVAVKHTTLDAALTRVPPKALGDALVVPFLNGVEHPAYLRDRYPADQVAPAVIRVESTRVAPGVIEHGSPFAEIDMAGDTVPRGRLEALAEALSDAGPVARVLDDEAAALWAKMAFLAPFALLTTRYGVPIGEARTAYRDELTALVAEAAAVSGACGGPADPAGALARYDAFPARSKSSMLRDAEAGRPLELDAIGGALLRAAERHGVAVPVTSRLVAELGASS
>NZ_CP029788.1|WP_110627928.1|2576303_2576651_+|hypothetical-protein
MATTYDFPSDLRAGQEELHQVRAELSALLKRLPWSVEPLDGFSDDAGWRKIERPASPGWTADEQAEVEKLRRREHELAVFVSTHRFWSEVAVEHRVEARTQLKHAHETPPEDEKG
>NZ_CP029788.1|WP_110627929.1|2576654_2577299_-|DUF305-domain-containing-protein
MSNTRTRVRRVGLAALAVSAALTLAACGGGSGGHEEHAAPAPTASAATTAGAHNAQDVAFAQGMIPHHRQALDMAALAAGKASSAQVKDLASRIQKAQDPEIRTMSGWLEAWGEDVPQADGSSMPGMDHSAHTGGHSAMPGMMGDEDMEKLEKASGKAFDAMFLTMMIEHHQGAVQMATTEKAKGRYGPAKAMAGDIVTAQNAEIQEMRKLLGQ
>NZ_CP029788.1|WP_110636394.1|2577386_2577725_-|hypothetical-protein
MLGLLAGLFAMHGLAPGGGLAGGHPQGHARHGVVAVSMDDECGHDGHGGGHARHADATCASGAVSGGPVLPALAVDPLAAHQAVEAPRSYAGDAPEGGRAPPSLSELQLLRI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029788_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_4

3245629-3245711

Orphan

Consensus_repeat	Method
CCCACGCACCCCGCGGTCGACCTGCGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_4

>merge|NZ_CP029788|4|3245629-3245711|CRISPRCasFinder
CCCACGCACCCCGCGGTCGACCTGCGCAAAGCTTCCGCTCCCACCGACGACGCGCCCACGCACCCCGCGGTCGACCTGCGCAA

>NZ_CP029788|4|4|3245629-3245711|CRISPRCasFinder
CCCACGCACCCCGCGGTCGACCTGCGCAA	AGCTTCCGCTCCCACCGACGACGCG
CCCACGCACCCCGCGGTCGACCTGCGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110628470.1\|3246078_3247467_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP029788.1\|WP_110628468.1\|3243351_3243762_+\|SsgA-family-sporulation/cell-division-regulator	unknown	unknown	gnl\|CDD\|377399
NZ_CP029788.1\|WP_110628467.1\|3241289_3243140_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP029788.1\|WP_110628465.1\|3237446_3239798_-\|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|368494
NZ_CP029788.1\|WP_110636536.1\|3251210_3252014_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP029788.1\|WP_110636533.1\|3249990_3251199_+\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP029788.1\|WP_110628474.1\|3253124_3253751_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378968
NZ_CP029788.1\|WP_110628469.1\|3243786_3245193_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273050
NZ_CP029788.1\|WP_110628476.1\|3254030_3254822_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226011
NZ_CP029788.1\|WP_110628461.1\|3234459_3234777_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP029788.1\|WP_110628472.1\|3248766_3249246_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP029788.1\|WP_110628471.1\|3247490_3248639_-\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|273528
NZ_CP029788.1\|WP_110636529.1\|3240153_3240390_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349991
NZ_CP029788.1\|WP_110628463.1\|3236370_3236964_+\|nicotinamidase	unknown	unknown	gnl\|CDD\|238493
NZ_CP029788.1\|WP_110628473.1\|3249266_3249914_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP029788.1\|WP_110628464.1\|3236983_3237325_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110628462.1\|3234834_3236184_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP029788.1\|WP_110636539.1\|3252049_3253066_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270329
NZ_CP029788.1\|WP_110628475.1\|3253828_3254017_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110628466.1\|3240447_3241200_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110628470.1\|3246078_3247467_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	6.67879e-13
NZ_CP029788.1\|WP_110628468.1\|3243351_3243762_+\|SsgA-family-sporulation/cell-division-regulator	gnl\|CDD\|377399	pfam04686, SsgA, Streptomyces sporulation and cell division protein, SsgA. The precise function of SsgA is unknown. It has been found to be essential for spore formation, and to stimulate cell division.	7.34258e-45
NZ_CP029788.1\|WP_110628467.1\|3241289_3243140_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	4.39171e-24
NZ_CP029788.1\|WP_110628465.1\|3237446_3239798_-\|M6-family-metalloprotease-domain-containing-protein	gnl\|CDD\|368494	pfam05547, Peptidase_M6, Immune inhibitor A peptidase M6. The insect pathogenic Gram-positive Bacillus thuringiensis secretes immune inhibitor A, a metallopeptidase, which specifically cleaves host antibacterial proteins. A homolog of immune inhibitor A, PrtV, has been identified in the Gram-negative human pathogen Vibrio cholerae.	0
NZ_CP029788.1\|WP_110636536.1\|3251210_3252014_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	3.44414e-55
NZ_CP029788.1\|WP_110636533.1\|3249990_3251199_+\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	6.74099e-146
NZ_CP029788.1\|WP_110628469.1\|3243786_3245193_-\|FAD-binding-protein	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	5.83826e-149
NZ_CP029788.1\|WP_110628476.1\|3254030_3254822_-\|hypothetical-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	7.42176e-34
NZ_CP029788.1\|WP_110628461.1\|3234459_3234777_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	3.81582e-42
NZ_CP029788.1\|WP_110628472.1\|3248766_3249246_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	5.33693e-27
NZ_CP029788.1\|WP_110628471.1\|3247490_3248639_-\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|273528	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see . In some bacterial species, this enzyme has been studied as a hemolysin. [Energy metabolism, Amino acids and amines].	0
NZ_CP029788.1\|WP_110636529.1\|3240153_3240390_+\|hypothetical-protein	gnl\|CDD\|349991	cd18547, ABC_6TM_Tm288_like, Six-transmembrane helical domain Tm288 of a heterodimeric ABC transporter Tm287/288 from Thermotoga maritima and similar proteins. This group represents the six-transmembrane helical domain (Tm288) of a heterodimeric ABC transporter Tm287/288 from Thermotoga maritima and similar proteins. This TMD possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Moreover, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.	0.00162872
NZ_CP029788.1\|WP_110628463.1\|3236370_3236964_+\|nicotinamidase	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	1.41916e-77
NZ_CP029788.1\|WP_110628473.1\|3249266_3249914_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	6.00751e-52
NZ_CP029788.1\|WP_110628474.1\|3253124_3253751_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	5.77923e-11
NZ_CP029788.1\|WP_110628462.1\|3234834_3236184_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP029788.1\|WP_110636539.1\|3252049_3253066_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270329	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.81555e-153
NZ_CP029788.1\|WP_110628466.1\|3240447_3241200_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	9.81351e-26

>NZ_CP029788.1|WP_110628469.1|3243786_3245193_-|FAD-binding-protein
MIMSRIEAPRDERTGNLLDRLLAGLPAEAVLTDPDVTASYAHDMASFCPAGSPAVVVLPRTVEQVQHVLRTATELRVPVVPQGARTGLSGGANATDGCIVLSLTKMDRILEINPVDRVAVVEPGVVNAALSRAVEEHGLYYPPDPSSWEMCTIGGNIGTASGGLCCVKYGVTAEYVLGLDVVLADGRLLTTGRRTAKGVAGYDLTRLFVGSEGSLGIVVRAVLALRPKPPRQLVLAAEFPSAAAACDAVCRIMAGGHVPSLLELMDRTTVKAVNDLAHMGLPETTEALLLAAFDTPDPAADLAAVGALCEAAGATQVVPAEDTAESELLLQARRLSLTALEAVKGTTMIDDVCVPRSRLGDMLDGVERIAAKYGLTIGVCAHAGDGNTHPTVCFDAQDPDESRRARESFDEIMALGLELGGTITGEHGVGVLKKEWLAREIGPVGVEMQRQIKQVFDPLGILNPGKLF
>NZ_CP029788.1|WP_110628468.1|3243351_3243762_+|SsgA-family-sporulation/cell-division-regulator
MHTVVERELELRLILSPERGIPVPARLTYRTDDPYAVHITFHINSEYPVNWTFARELLVEGVFRPCGHGDVRVWPTKVDGRSVVLMALSSPDGDALLEAPAAQVSAWLERTLRVVPPGTEGEQLGIDDALDQLLAQ
>NZ_CP029788.1|WP_110628467.1|3241289_3243140_-|RDD-family-protein
MSAPTPAPGDDRPREGYYPDPSIPGYVRYWNGSAWVPGTSRPAPTDGEPLAPPPGVRPAQPASVEETGPHFFDEDPQPGPAADPQEPASAWTADRARQSGFGTDQDRRVSWGTPGAAADPRVPTDPARTPAPGSGPAQPPVPGRPAVPGQAAGPAQSPVPGQATGPAQPPTPGQASGVAPANVPGQGPGAGQSFGPAQASGAGRSPVPAQGPGAAQGPVPGQSFGPAQASGGGAGRAEAGDAESSPGTVVFRRPTAADAPQGDQDAGTMLFRPVPSQGQGDGRGQAGRGTPGAAPDWPEAGSDFAAQGPVHAGAAGPAAAAAPGPGFAAGKAAADRAAAAQGPAAATPGTPAATPGPTASQPNPAAPGPVGPAAPATPGVPHQAAAAPQPVTAPSAPASPVSNPLSTPVTSGPGGGQASWAQQVHQLAGAGEAEQPVAPWKPPVEDIFQAAARRQASARPAGLGRRLAARLVDTLVVAAVTSAAAVPLGLKTVDHVNEKIDAAKLTGRTVTVWIVDGTTSVYLGVILAVLLLAGVLCEALPTAKWGRTLGKKLFRLEVRDIEAHEPPSFGAALRRWLVYSIPGLLGIGVVGVVWGLFDRPWRQCWHDKAAHTFVAG
>NZ_CP029788.1|WP_110628466.1|3240447_3241200_-|RDD-family-protein
MSTEPPPGSGQPPEDDPFRKQPPPGPGQGPGPGSPYDTPHGGQPPPPHGTGGPPGGGPYGGGGPYGGGGPYGGDPYGGPGGPYGGPGGPYGGPGGPADPLAGMPPLADSGKRTLARIIDMILVGVVVWLLTLGFNVDEYTVDGDRIEVGKSLGQSAIAAVLYVAYDTFLIARTGQTVGKKLLGMRVANLDNGANPSVQNALLRALVLWIPFAFCCACVWTAISGGWSFFDKPYKQGLHDKAAKSVVVSTG
>NZ_CP029788.1|WP_110636529.1|3240153_3240390_+|hypothetical-protein
MPRPTVAQLVYGACTVVFSTLAMLLLSQTGSGPAIAVIAVAALALGVLVAMTVPVPKASAPAAQPASAERSEREPVAP
>NZ_CP029788.1|WP_110628465.1|3237446_3239798_-|M6-family-metalloprotease-domain-containing-protein
MTSRSWTFRAAAISVALAAASAGFTTFAVAEAAPNAGATTVDRHDPAPEKQHKHDLDGPLSKTQEAQRQEALDQVISGQAQVKEKNGSKVVQLKSKKGDSKFVELGREKTDKIFTILVEFGDKTDPKFGGTPGPLHNTIAAPDRTKDNSTAWQADYDRQHFQDLYFGTGKNTESVKKYYEKQSSGRYSVDGEVSDWVKVPYNEARYGNNACGSTNCPSVWNVVSDGLSAWVAQQKAAGRTDAQIKADVAQFDQWDRYDYDADGNFNEPDGYIDHFQIVHAGEDESAGGGAQGTDAIWAHRWYAFGTDAGATGPANNRLGGAQIGDTGIWVGDYTIQPENGGLGVYAHEYGHDLGLPDEYDTAGGENSTGFWTLMSSGSWLGRGKDAIGDLPGDMNAWDKLQLGWLNYDTAKAGKQSTHKLGVAEYNTWDKQALVVNLPDKAVTTEVVKPAEGATQWWSGSGDDLKNTLTRSVDLTGKTSAALTLDGWYDIEANYDYLYTEVSTDGGANWTALDGTVDGQPIPRDGSDKPALTGSSETYKKLSYSLDAYAGKKIDLRFRYQTDGGVALKGFAADEITVTADGAALFSDNAETLDPAWTKVGFDRIGASFTKDYAQYYIAENRQYVSYDKTLKTGPYNFGFSTTRPDWVEHYAYQNGLLIWKWDTSQADNNTGTHPGAGLILPIDSHPEALRWKDGTLMRGRIQSYDAPFSLYPTDGMTLHKADVATRIWPSAGVSVFDDHASTYYDASNPASGVKVTDTNTRIRIVKEAKDGSTINLQVGPAVK
>NZ_CP029788.1|WP_110628464.1|3236983_3237325_-|hypothetical-protein
MAAGGFCKLPNGSVVVALNLPSPAADGPAGVRVLVHAQNRARALTRLRNLGLRSVYLRGNAAPPTPDEITAVLHHPDGLIWRTAPGSAVGGPELMTELWHPIRALLRRPAAPA
>NZ_CP029788.1|WP_110628463.1|3236370_3236964_+|nicotinamidase
MRRALIVVDVQNDFCEGGSLAVAGGADVAAAITELIGQATPAYRHVVATRDHHIAPGGHFADNPDYVRSWPAHCVAGTEGVGFHPNFAPVVASGAIDAVFDKGAYAAAYSGFEGADENGTGLADWLREREVDEVDVVGIATDHCVRATALDAAKEGFRAHVLLDLTAGVAQETTEKAIEEMREAGVELTGKPVVLRG
>NZ_CP029788.1|WP_110628462.1|3234834_3236184_+|nicotinate-phosphoribosyltransferase
MNTADLGLPVDVPSTALFTDHYELTMLQAALKAGTAERRSVFEVFTRRLPNGRRYGVVAGTGRVLDAVENFRFDAGVLGFLRERRIVDDATLDWLAGYRFSGDIWGYPEGEVYFPGSPILRVEGSFAECVLLETVILSILNHDSAIAAAASRMASAAGDRPLIEMGARRTHELSAVAASRAAYVGGFASTSDLAAGFRYNIPTVGTSAHAFTLLHDCERDAFRAQVESMGRGTTLLVDTYDVTEAVRTAVEVAGPELGAVRIDSGDLLLVAHRVRQQLDELGARDTRIIVTSDLDEYAIASLAAAPVDAYGVGTQLVTGSGHPTASMVYKLVARAESADPKAPLKPVAKKSSGGKTSVGGRKWAARRLDEDGVAEAEVVGTGPVPAELADRQLLVELVKGGEIVGREPLDAARERHAATRAGLPLSAIQLSRGEPVLPTEYVHGRSGSQ
>NZ_CP029788.1|WP_110628461.1|3234459_3234777_-|ATP-dependent-Clp-protease-adapter-ClpS
MVTVTAAAPIEIEKTESAEEVSAVPEPDVPWVTIVHNDPVNLMSYVTYVFQTYFGYSKDKATKLMLDVHHKGRAVVSSGTREEMERDVQAMHGYGLWATLQQDRK
>NZ_CP029788.1|WP_110628470.1|3246078_3247467_+|tetratricopeptide-repeat-protein
MPRSRSRRRWALIASLAAGGLVVGGVLVGLPAEAPVRSAPVPAPGPQARAALAAGAPAALPDLTVLIGEQEAYLRAHPKDARSWALLGTAYVEQGRRTAEAALYPKAESALRRSLKSTPKRNPDALDGLAALANARRDFRAAKGYAEAALKERPKHWRTYPLLIEALTGLGDHKGAGRALDRLTELHSGPAVRARAAAVYRDRGWREDAQAALADAAAAAGAPAERAAYLQGAGELAWERGDLQDALRHFRAAARTDPDLRAAQAGQARVLAALGRSSEALSAYRVALTRQPEPQYALELGELYESLGLRDAARVEYDLLRALVRQHAAGGVDGNLTLGRFEADHGDPATAVRLLRAEWRRQPGIEVADALGWALHRAGADKEALRFAAIATDKAHGGGVRSAPYAYHRGMIERALKQYGPARRHLQEALRINPYFSVVHAPAARAALRALGEPSEDGPPER
>NZ_CP029788.1|WP_110628471.1|3247490_3248639_-|4-hydroxyphenylpyruvate-dioxygenase
MTQTTHHTPDTTARQDDPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMKLVAYSGPENGSRETASYVLENGSARFVLTSVIKPATTWGHFLAQHVAEHGDGVIDLAIEVPDARRAYAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGETRHTLVDRSGYDGPYLPGYVAADPIVEPPAQRTFQAVDHCVGNVELGRMNEWVEFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKFPINEPAVAKKKSQIDEYLEFYGGAGVQHIALNTNDIVATVRAMRAAGVQFLDTPDSYYDTLGEWVGDTRVPIETLRELKILADRDEDGYLLQIFTKPVQDKPTVFFELIERHGSMGFGKGNFKALFEAIEREQAKRGNL
>NZ_CP029788.1|WP_110628472.1|3248766_3249246_+|Lrp/AsnC-family-transcriptional-regulator
MAIDHLDGRIIVLLAREPRIGVLEMSRRLGVARGTVQARLDRLQSNGVIRGFGPEVDPAALGYPVTAFATLQIRQGQGADVRAHLATVPEVLELHTTTGTGDMLCRLVARSNADLQRVIDRVVGFDGIVRASTAIVMENPVPLRIIPLVEQAAEDRDRT
>NZ_CP029788.1|WP_110628473.1|3249266_3249914_+|ABC-transporter-permease
MDFWEYLGSRHQQLLTDAWQHASAVFQCMVLATVLGVLIGVVTYRSGWAGNLATTTTSTILTIPSLAMIGLLVPVVGLGVPPTVIALTLYGLLPIVRNSIVGLRGVDPTLVDAARGIGMSGPMRLVRVELPLAWPPILTGIRVSTQMLMGIAAIAAYASGPGLGNEIFRGLASLGSKNALNQVLAGTLGIIILALLFDAAYVLIGRLTIPRGIRV
>NZ_CP029788.1|WP_110636533.1|3249990_3251199_+|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein
MELENLTKRYPGSPQPAVDNVSMEIKAGETVIFVGPSGCGKSTTLKMINRLIEPSGGRIRIGGEDVTDIDPVKLRRKVGYAIQSAGLFPHMTVAQNIALVPKMIGWSKARIRSRVEELLDLVGLDPGEFHGRYPRQLSGGQQQRVGVARALAADPPVLLMDEPFGAVDPITRDHLQDELIRLQHELHKTIVFVTHDFDEAIKLGDRIAVLRERSHIAQFDTPEAILTNPADDFVSGFVGAGAALKRLNLTRVRDVEITDYPTVTVDTPLQEIFLLLRSSGTNEILLLDRRRRPYKWLRRGDLMRARGSLARAGTLVHDTVTRDATLRDALEAVLTDNAGRVAVTGRRGEYTGVVDMETLMNSVHELLEADRLDAMEHQHELAEIRAAQTHAEQEGEGGGPKA
>NZ_CP029788.1|WP_110636536.1|3251210_3252014_+|ABC-transporter-permease
MVPEAEDEERHERQAPRPASRRPRIGWRKLTFLPALLVAVLLATWLWFAQADLDPVSENALSNGQVSKALWQHVQLTVISTFFVLVIAIPLGILLTRRAFRKATPVAMALANMGQATPAIGLLALLVIWLGIGRRAALIGIIAYAVLPVLSNTIAGLKANDPTLLEAARGIGMSPLGVLARVELPLAVPLILAGVRTALVLNVGTATLATFGGGGGLGVLITAGITNQRMPVLVLGSILTVALALLVDWLASLAELLLRPRGLEVGT
>NZ_CP029788.1|WP_110636539.1|3252049_3253066_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRRAFGHVRQACGHVRRADRRVRRALGLGLAGALVAGCGLTSGSPMVDDVEPGSIGKGRPLEGAHLTVTSKSFTESLIMGAMMGIALQAAGADVLDRTGIQGSVGGREAIKSGDADAMYEYTGTAWITYQGNGKPIADPHKQWEAVRAADVDNGVAWLPPAALNNTYALAMNEANYKKYGTKTLSDVAALAERDPGAVTLCVEGEFANRADGLPGMEKAYGMDVPAKNVTQMDTGIIYTQTAKGNCTFGEVFTTDGRIRSMHLVVMKDDRKFFPNYNAAPVINADTLKQWPAMAEVLDPVTKKLTNDVAQELNAKVDVDGEDPHQVALDWMEKEGFVK
>NZ_CP029788.1|WP_110628474.1|3253124_3253751_+|helix-turn-helix-transcriptional-regulator
MQRKLCIDTFVRVTEPAPAPRKLRHLDPRSLRGLAHPLRMQLLDALRRSGPATASRLAERLGESSGATSYHLRQLAAHGFVEDAPGHGKGRERWWRAVDQGLVFDSDDFEGTGPEVRGLAETFLHEIAATHARELSAWLGTRERWGKDWSRSSDMSDATLRLTPELATELVGKMRALIEDYRGRVPDQDTPGSEQVRVHTHLFPVETD
>NZ_CP029788.1|WP_110628475.1|3253828_3254017_+|hypothetical-protein
MRIETHLAREHAADLRAAADAHRLARQAAGHQRRLRTRLGWTLVDVGLRLAAPKGADVALAV
>NZ_CP029788.1|WP_110628476.1|3254030_3254822_-|hypothetical-protein
MLSRLTRPQALAVCGLPVVALIATAAFAPLPFSLAQPGLTADVLGENKGTPVITVSGAPTRQTRGELRMVTIEATPPGARVTLGDVLDGWFATDRAVMPHDSVYPGGGSVKDIERHNTEEMERSQDDATAAALGYLHLSPKDVKVDLTLADVGGPSAGLLFTLGIIDKLDGDGSGGDLTGGRTIAGTGTIDPDGKVGAVGGVALKTQAARRDGATVFLVPKAECGDAKAELPKGLRLVPVTTLKSAVDALVALEKGKGEVPSC

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Crispr_ID: NZ_CP029788_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_5

3311126-3311269

Orphan

Consensus_repeat	Method
AGCCCCCGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_5

>merge|NZ_CP029788|5|3311126-3311269|CRISPRCasFinder
AGCCCCCGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACCATTCAACCGACCGAGACGGGTGGGCGGGTGGGCAAGCGGGGGTGCAGGGGGCGGAGCCCCTGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACC

>NZ_CP029788|5|5|3311126-3311269|CRISPRCasFinder
AGCCCCCGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACC	ATTCAACCGACCGAGACGGGTGGGCGGGTGGGCAAGCGGGGGTGCAGGGGGCGG
AGCCCCTGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110628516.1\|3309802_3310909_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP029788.1\|WP_110628524.1\|3325335_3325749_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP029788.1\|WP_110636561.1\|3314740_3318466_+\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NZ_CP029788.1\|WP_110628509.1\|3302900_3304001_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119349
NZ_CP029788.1\|WP_110628525.1\|3325845_3326391_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029788.1\|WP_110628521.1\|3321417_3322335_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP029788.1\|WP_110628511.1\|3305202_3306372_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP029788.1\|WP_110628519.1\|3318678_3320061_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP029788.1\|WP_110628518.1\|3312720_3314385_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP029788.1\|WP_110628517.1\|3311332_3312604_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP029788.1\|WP_110628513.1\|3307390_3308080_-\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NZ_CP029788.1\|WP_110628512.1\|3306440_3307358_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NZ_CP029788.1\|WP_110628522.1\|3322481_3323549_+\|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|366154
NZ_CP029788.1\|WP_110628508.1\|3301901_3302804_-\|DUF4232-domain-containing-protein	unknown	unknown	gnl\|CDD\|379419
NZ_CP029788.1\|WP_110628515.1\|3308676_3309519_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110628514.1\|3308380_3308572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110628523.1\|3323730_3325332_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378569
NZ_CP029788.1\|WP_110628507.1\|3301194_3301878_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380311
NZ_CP029788.1\|WP_110628510.1\|3304667_3305147_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_CP029788.1\|WP_162655529.1\|3320065_3321421_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110628516.1\|3309802_3310909_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP029788.1\|WP_110628524.1\|3325335_3325749_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.69052e-70
NZ_CP029788.1\|WP_110628509.1\|3302900_3304001_-\|hypothetical-protein	gnl\|CDD\|119349	cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model.	4.9975e-07
NZ_CP029788.1\|WP_110628525.1\|3325845_3326391_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.79423e-23
NZ_CP029788.1\|WP_110628521.1\|3321417_3322335_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.34139e-78
NZ_CP029788.1\|WP_110628511.1\|3305202_3306372_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	3.44375e-65
NZ_CP029788.1\|WP_110628519.1\|3318678_3320061_+\|extracellular-solute-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.56663e-30
NZ_CP029788.1\|WP_110628518.1\|3312720_3314385_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.80119e-105
NZ_CP029788.1\|WP_110628517.1\|3311332_3312604_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.96207e-84
NZ_CP029788.1\|WP_110628513.1\|3307390_3308080_-\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	8.92988e-125
NZ_CP029788.1\|WP_110628512.1\|3306440_3307358_-\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	5.08231e-57
NZ_CP029788.1\|WP_110628522.1\|3322481_3323549_+\|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.77263e-33
NZ_CP029788.1\|WP_110636561.1\|3314740_3318466_+\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	2.48874e-21
NZ_CP029788.1\|WP_110628507.1\|3301194_3301878_+\|nitroreductase-family-protein	gnl\|CDD\|380311	cd02062, Nitro_FMN_reductase, nitroreductase family protein. Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.	1.28651e-19
NZ_CP029788.1\|WP_110628523.1\|3323730_3325332_+\|hypothetical-protein	gnl\|CDD\|378569	pfam11143, DUF2919, Protein of unknown function (DUF2919). This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.	0.000501499
NZ_CP029788.1\|WP_110628508.1\|3301901_3302804_-\|DUF4232-domain-containing-protein	gnl\|CDD\|379419	pfam14016, DUF4232, Protein of unknown function (DUF4232). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 177 and 242 amino acids in length. Many members of this family are lipoproteins.	1.4549e-15
NZ_CP029788.1\|WP_110628510.1\|3304667_3305147_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	3.15864e-86
NZ_CP029788.1\|WP_162655529.1\|3320065_3321421_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.44458e-40

>NZ_CP029788.1|WP_110628516.1|3309802_3310909_-|peptide-chain-release-factor-2
MAVVDVSEELKSLSSTMESIEAVLDLDQLRADIAVLEEQAAAPSLWDNPDEAQKITSKLSHLQAEVRKAEALRSRIDDLAVLFEMAEEEDDPDTRAEAETELAAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEGRGYKTELIETSYAEEAGIKSTTFAVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVLPVVEQSDHVEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQLQNKATAMNVLQAKLLERRRQEEQAKMDALKGDGGNSWGNQMRSYVLHPYQMVKDLRTEHEVGNPEAVFNGEIDGFLEAGIRWRKQQEK
>NZ_CP029788.1|WP_110628515.1|3308676_3309519_-|hypothetical-protein
MTKKTRVRVARIAAAAVIAAGASLTAAGAASALEINIGVDLDGTDSGGSTEGTSSGSTEGASEGASEGASVGVSEGASEGTSTGTSEGTSTGTSEGTSTGTSEGTTEGGLIIGGTSEGTSEGTSTGTSEGTSTGTSTGASEGTSTGTSAGTSAGTTDGGTGNNGGSGNNGGNGNGNGGGNGNGGGNASTGGSGGNDNTTPDGGNDNAAQEAGSSALTDTGSATSSTGGSAASAQGDGKELAETGAGQTTFLVIGAATMIAGGVGFRILPRLVGGRGGAAA
>NZ_CP029788.1|WP_110628514.1|3308380_3308572_+|hypothetical-protein
MTYDRLVCASCAAPVSEGRCPVCRANRERLQQESFLGGLNPMALIALLAVLVAAVALLAHQTV
>NZ_CP029788.1|WP_110628513.1|3307390_3308080_-|cell-division-ATP-binding-protein-FtsE
MIRFDNVSKVYPKQSRPALRDVSLEVEKGEFVFLVGSSGSGKSTFLRLILREERASHGQVHVLGKDLARLSNWKVPHMRRQLGTVFQDFRLLPNKTVAENVAFAQEVIGKSRGEIRKSVPQVLDLVGLGGKEDRMPGELSGGEQQRVAIARAFVNRPKLLIADEPTGNLDPQTSVGIMKLLDRINRTGTTVVMATHDQNIVDQMRKRVIELEKGRLVRDQARGVYGYQH
>NZ_CP029788.1|WP_110628512.1|3306440_3307358_-|ABC-transporter-permease
MRAQFVLSEIGVGLRRNLTMTFAVIVSVALSLALFGGSLLMSDQVSTMKGYWYDKVNVSVFLCNKSDAESDPNCAKGAVTQDQKNQILTDLKKMTVVQSVTYESQDEAYKHYKEQFGDSPLAASLTPDQMQESYRIKLKDPEKYQVIATAFDGRDGVQSVQDQKGILDNLFELLNGMNWAARAVMALMLVVALMLIVNTVRVSAFSRRRETGIMRLVGASGFYIQAPFIAEAAVAGLIGGTVACGFLLVARYFIIDHGLALSEKLNLINFIGWDAVLTKLPLILATSLLMPALAAFFALRKYLKV
>NZ_CP029788.1|WP_110628511.1|3305202_3306372_-|PDZ-domain-containing-protein
MSGRDLFCQPRRTGRGAALTLVFASVLVAGAATGSLPGTGRTEDARAARSAAPVSRPEQVARAAEEAMADGKSPMEAAERAVSRSGDRWAAVYSRGEYEEFQDALDGRYTGVGLWARRERDGRIEVTKVAAGSPAAEAGIRAGDRLRSVDGRRVDGRPVTEVVSLLRGDATGASAGTTVTLGLERGTRAWSLTLRRARLSTDSVTVRRLAGGVTVIRIASFTKGVGDTVRTAVRQAPSGAGVILDLRGNSGGLVAEAVTTASAFLDGGLVATYDVDGEQRALHAEPGGDTTRPLVAVVDGGTMSAAELLTGALKDRGRAVVVGSRTFGKGSVQMPSRLPDGSVAELTVGHYRTPSGRGVDGTGVTPDLEADAHAVQRARTILDGLGDAS
>NZ_CP029788.1|WP_110628510.1|3304667_3305147_-|SsrA-binding-protein-SmpB
MAKEKGRKLIAQNKKARHDYLILDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLDGHEAWLYNVHVPEYSQGTWTNHSARRKRKLLLHRAEIEKLEAKAQETGHTIVPLALYFKDGRAKVEIALARGKKEYDKRQTLREKQDRREAERVMSAVRRRQRA
>NZ_CP029788.1|WP_110628509.1|3302900_3304001_-|hypothetical-protein
MAGARHRSLAVLLGLLGALLVPTAAPPASAAAAATAPQIYGAWHCSNDACTWGTVRTAAEFDSQNHWLIDRGDGRPSVNLVVLSFVEPLKLLHGTTDATTVNGVPKGMTREIVQYFTAHGIRVMLSIGGITYTDAWNTALAENATLLGQRAAALASSLGVGIEIDYEENTAPDLTGLQAFIDAYRAAHPYDATGADPTARLTLDTAAGDRWLIALNRKATADWLRTDRPVLDYANAMVPARQPSTSGAIANWQEHVDGKPAYSPPVPPLAPAKFTGAVYISDQSKSLPECTDFANSLQKSTGSYTQTVAPNGVGVSSGMLGYMFWAAERPSTRGSGTTPPNTCEGGVGAGATAYGIPVPMPALRQS
>NZ_CP029788.1|WP_110628508.1|3301901_3302804_-|DUF4232-domain-containing-protein
MRTFPLAALAGAALLLAACGTQTPAARGDGDRRCPSASPLPPGAAGLSEGGVRITSFAAAAAAGGGCPASEAAATYEVTNDSGTPMTYTVALGFRSASGGAVDVVTQTVAGVRPGQTVRRTVRPNRLPSAAPAVTGAEISKVRSVPAAEAPSQGGPCPRSGVRVYADQGDAAMGLRVVGLHLENCSTGVYRLDGYPELQLLDEKHAPVTGVRVQHGGAGISSGTGADAPPVPLALKPGEAARATLTWRNTTGFGDPVNAPYVRVHARPGAAPVTVTPELDLGTTGRLGVGAWQRADAGTP
>NZ_CP029788.1|WP_110628507.1|3301194_3301878_+|nitroreductase-family-protein
MTLDLTPDQLLSTTRAVRKRLDFDRPVPRSLIEECVDLATQAPTGRNRQRWHFVVVTEPAQRRAVADIFLRALPLATGHPLTEADVWRMNYHRDSTDRVFDGLRHLATHIHRVPAFVIPGVEGRTDHAPVSVQAGVWGSILPAVWSFMLAARARGLGTTWTTAQGPLERELAEVLGVPYDEVMLAAFVPLAYTLGTDFKPARRIPREHVLHWDRWSRGEHPSAEPPR
>NZ_CP029788.1|WP_110628517.1|3311332_3312604_-|serine/threonine-protein-kinase
MARKIGSRYTAHQILGRGSAGTVWLGEGPDGPVAIKLLREDLASDEELVGRFVQERTALLGLEHPNVVSVRDLVVDGNDLALVMDLVRGTDLRTRLERERRLAPEAAVAIVADVAEGLAAAHAAGVVHRDVKPENVLLDMQGPLGPGGAHPALLTDFGVAKLIDTPKRTRATKIIGTPDYLAPEIVEGLPPRAAVDIYALATVLYELLAGFTPFGGGHPGAVLRRHVTETVVPLPGIPDELWQLLVQCLAKAPASRLRASELAARLREQLPTLAGMPPLDVDEPDAEADGEDGEPDDFRADAGPRGLSGDTADISPSGGRVRRGAVPLVPGAKPDSNRDTHTSMRVPGPDELAGGAHGTARAPRAAGAPRPGSARNRAAARRRRVTLGVAGVVLAAAVGVGAWVATSSDDAPPPATPTAPTSP
>NZ_CP029788.1|WP_110628518.1|3312720_3314385_-|serine/threonine-protein-kinase
MRPVGSKYLLEEPLGRGATGTVWRARQRETAGAEAAVAGQPGETVAIKVLKEELANDADVVMRFLRERSVLLRLTHPNIVRVRDLVVEGDLLALVMDLVDGPDLHRYLRENGPFTPVAAALLTAQIADALAASHADGVVHRDLKPANVLLKQDGGQMHPMLTDFGIARLADSPGLTRTHEFVGTPAYVAPESAEGRPQTSAVDIYGAGILLYELVTGRPPFGGGSALEVLHQHLSAEPRRPSTVPDPLWTVIERCLRKNPDQRPSAENLARALRVVAEGVGVHANAAQIAAAENVGALLAPDPAPAPVPGSADPTQVLPQGQAGAYDPNAATSVLPHTGGPVPAGAADPTAVLPHTGAADPTAVMPPVPPGGQQPEQPHPWQTQLRAARDRNEQTQVHQYLDPGEDPLRRRPQRQVARPQQPQQPQRPAQQQRPPQRYAAQQPQQYAPPPQQPQRYAAPQPHQPQQPPQQQRPAREPRAPRQRSANPMKIPGLGCLKGCLFMVVVLFVAGWLVWELTPLQDWIGTGKSYWQQLSDWFDTVTGWIGDLGSGSSSQ
>NZ_CP029788.1|WP_110636561.1|3314740_3318466_+|FHA-domain-containing-protein
MQIRLTVVDPLAPAGARGRAASCDVLVTAPAGTALAAVASGLAAAVQAGDGPVVLYAGAERLDAQRCTLGEPPLTDGAVLSLGAPADPEPHPELDDAPAQLHVVAGPDAGGVHLLHGGEVRVGRSADADVPLDDPDVSRLHCAVTLSPDGRVTVADLGSTNGTVLDGTRVDERPVRFGPGSLLRIGESALRMAPAGGPGARVPTTPDGEGHVRVPCGTETAEALPARVDGPPAPSAPTGQANGGVTWSGSTAPGARPSGGPAAHPTVPGQAGAPGIEHRPGAADGTAPGHRPAGPDGTAADRTASGHRADGTAPDGTASGLRPAAAPDRAASGLPGAAPTPGTGGTGLPTHGAGLDVRAADGNGTAGDGRGAPFAPGTGMGTGTDGRDARAAGRDAGTFAQDGRTDGRGTPRGADVPQGTGRRRGLSAWARRLTGGRAAAEAVVPEVYDEERTGAAPAEPVPSGVPETWPDPAALLLTALGPGPRLWERGPGHPEALTVRLGTADRAAPDGSGLLPAVPVTAGLREAGALGLAGPRPRLSGLARAVVAQLAALHSPDTLEIVLISVDRARSLEERTAEWSWLGWLPHVRPGHGQDCRLLLAYDREQAAARTDELLRRLADQDAERSTEAARLGAAHPVNGSAAPRAGRPTDTPARRPTEAHPVDGWITGPRETHATPGLGHPPDPQTTPGGTAAPTTPRRPSWARPDDGPGDGSGGSHGVAGPGHPGPYTVVVVDGDPGGPGLREAVARLAVEGPRAGIHVVCLAETDPASPASPVAQTFRAACEASPTFADCGAVALLSGDVATALRLLRVARREAAPVGHGTLATVDAVSPAWAERFARALAPLRPDGPAERHARVSAPLPQAARLLEELGLARATPASLMARWADAADDTDALGGRARAVLGAGPRGPVGVDLVADGPHLLIEGPHGSGRTELLRAVVASLAAAERPDRLGIVLMDGRDRVGGGAGDGLRVCTDVPHVTTHLIANDPVRMREFAQSLSAELKRRAELLGRSDFAEWHRHREVSGRIVAQRTPTAAPGAGHGSGDIEAPPSSTIRLRPSAARRPAETAPPLPRLVVVVDDLDALVSPALGSPGRPAAGSVMRALEAVARDGERLGVHLVAAAGPGGRTAESEPARRAALRVALDAPGSGPDDPAPGRGRLTGADGRTTPFQAGRVTGRIPRTATLRPTVVPLEWHRMGDPPTRRPVRELGNGPTDLALLASALERAAREVSAAQVPSLL
>NZ_CP029788.1|WP_110628519.1|3318678_3320061_+|extracellular-solute-binding-protein
MRSTSSTHRTRTSMRAAAALAAGALALSLSACGGDDNDGGGSGGSTKGTESGGALALPKLDGTTLEVAAVWTGDEQKNFKQVLAEFSKRTGAKITFVPAQDPIINFLGSKVAGGQPPDVAMLPQPGAIKQAVDKGWAKPLNSDVQSELAKNYSQGWQDIGKVNGKQYGAYYKAANKSLIWYNAKVFENAGASEPKTWKDLLNTAQTVYDSGVTPFSVAGADGWPLTDWFENVYLSQAGPEKYDQLAKHQIKWTDPSVKDALTTLAQIWGKKDWVAGGSKGALQTSFTDSVEQTFTGGDQPKSAMVYEGDFAQVNIQQTKAKVGTDAKVFPFPAVGDTAPVVTGGDAAVILKDSKGAQALVKWLASPEAATIQAKLGGYLSPNKNVPNDAYPNAVQQKIAKALIDSGDDFRFDMSDQAPQSFGGTPGKGEWKDLQDFLKNPTDVAGAQRKLEADAAAAYGS
>NZ_CP029788.1|WP_162655529.1|3320065_3321421_+|ABC-transporter-permease-subunit
MASTAAGGVAKNPARPPVPRGRKSVTGTRRTVAALFLLPALVLLGALVVYPIGYSVIRSFYDQSGDSFAGVDNYKALFTDEGIRTALKNNIIWVVFAPTIATALGLVFAVLTERVRWGTAFKLVVFMPMAISMLAAGIIFRLVYDQDPDKGVANAVWVGVHDTFAEASAFPKAHPGRESPLEPAKGGGFVTKAPVHTGQAVTLPLVGVAPDQMPDSAKNAAAPKADPGKITGTTWQDFTRGKGVGKLNAVDSAELGYAGMKIEAVKDGKVVATAKAASDGTFTLPATADGAVLRLPASNFKEAYNGLDWLGPALVTPSIIGSYIWMWAGFAMVLIAAGLAGIPRDLLEAARVDGANEWQVFRKVTVPLLAPVLAVVVVTLMINVLKIFDLVFIIAPGSSQDDANVLALELYRKGFSEDQPGIASAIAVFLLLLVIPVMWFNIRRLRREVRR
>NZ_CP029788.1|WP_110628521.1|3321417_3322335_+|carbohydrate-ABC-transporter-permease
MTTDAGSVTKAAPPPASSSVQGRRSLGARLVGAVSGGVLRVFLIVVGLFWLVPTIGLLISSLRTPEDMGESGWWTVFSEPSQLTFESYRSLLENPDIQDSLVNTVLITVPATILVVVIGSLAGYAFAWMEFPGRDWWFLLVVGLLVVPVQVALIPIAELFGKLGLFGTVFGVILFHVGFGLPFAVFLLRNFFAEIPRELLEAARLDGAGELRLFARVVMPLGGPAIASLGIFQFLWVWNDMLVALVFTKSGTQPITVALQTQVRQFGNNVDVLAPGAFISMVVPLVVFFAFQRQFVSGVMAGAVK
>NZ_CP029788.1|WP_110628522.1|3322481_3323549_+|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase
MPRFSVIVPAYQVQAYLPACLESVLTQSYADLEPIVVDDRSPDASGEIAGEYAARDPRVRALRLPRRAGAGGARAAGAAEATGDYLLFLDGDDTLTAHALRAIADRLKETGEPDVPVHAVAHAHRDGRVERDAAGMVLTEFLRPARAHYRRYRTPGAAVRPAGRLRHALIRFGLHRTHRLLRLAQAAAGRLAKAAVKAARAGRSALLRLHYRVQLRLPLRADRAVFAAHRDRSHGYHPGALEQAFRAHAPQVRTAWIAAPEHHHTVPPGPRRITPGPAAYWTALARSRYVVSNDHLGLVKRPGQVFVQTRHGTPAQAQVVPLDERRPVPSASAFARPPLATVPRPAAAPTVAERL
>NZ_CP029788.1|WP_110628523.1|3323730_3325332_+|hypothetical-protein
MTVTSVLVRRPARGATALRGGRAWRPTPYQVFGFLFWLVMTLAYWRVPLCCDAGQHAAVVERLTARLLSPRHPTADLPGAGSPYYSPYAVAQGVFARLTGLGGWEVVRLAGPVNLLVLLAGLGRLVRALTPRPWAPVLALGAMTLLWGTERAWWSGYLGLMSMTGNLGYPSTFAIGLTFWAWSLTAARARDARRVRYVGPSGLRGAAGYGALGVLYGTILLVHPITSVAAATGAFAFVTAWQRRWSRAVAVRWAVTGAAAVLTAAVWPYFDAFSLAGNTGVDMIHRRLYDDLADRFWLALLPGLPALWLRARRAGRRASGGVAWRWAWRDPLVLMFAVDCLVVAYGWGSGHYTYGRVLGLTLMAPQCAVAVELAAPRPWRAWRRLLGAVAAGAALTGFLTVQAGAVVPRSLDPVGFEQPPRWPSYAWAARHIRPGEVVIADGYYAVHALAGYGPDLAAPAWPDPALDEAERQRRVADVRAYLAAGSTRAGRAAIVRRYHVRWLLLTPRRRLPEEAVVVAWSPRTGEVLARVAG
>NZ_CP029788.1|WP_110628524.1|3325335_3325749_-|organic-hydroperoxide-resistance-protein
MDALYTAVATATHGREGRAVSSDGKIDLALGLPVEMGGNGQGTNPEQLFAAGYAACFGSALGLVGRQAKVDVSDAAVTAEVGIGKQGEGFGLSVVLRVELPDTVDEATGRKLVEQAHQVCPYSNATRGNIDVELVIE
>NZ_CP029788.1|WP_110628525.1|3325845_3326391_+|MarR-family-transcriptional-regulator
MADKRYPGGMSPTEPAAAAATASEEDWLRLDRQICFSLHAASRAFNGVYRVILKDLGLTYPQYLVMLVLWERGELPVKKLGEHLRLDSGTLSPLLKRLEAAGLVRRERSARDERSVEVRLTEEGVALRGRALQVPRRIVAATGCDLDEIRALRERLDDLTAALDTAAAEAMAADAAVPHAE

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Crispr_ID: NZ_CP029788_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_6

3410948-3411064

Orphan

Consensus_repeat	Method
CGGCACGGTCCGTTCGGCGTCGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP029788_6

>merge|NZ_CP029788|6|3410948-3411064|CRISPRCasFinder
GCGGCCCGTCGGTACGGCGTCGCCCGGCACGGTCCGTTCGGCGTCGCGAGTCCAGTCTGTTCGGCGTCGCGAGCCTGGTCTGCCCGGTGCTGCGCGGGACGGTCCGTTCGGCGTCGC

>NZ_CP029788|6|6|3410948-3411064|CRISPRCasFinder
GCGGCCCGTCGGTACGGCGTCGC	CCGGCACGGTCCGTTCGGCGTCGC
GAGTCCAGTCTGTTCGGCGTCGC	GAGCCTGGTCTGCCCGGTGCTGCG
CGGGACGGTCCGTTCGGCGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110628582.1\|3409447_3410791_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NZ_CP029788.1\|WP_110636574.1\|3401822_3402116_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110628584.1\|3411784_3412144_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|380093
NZ_CP029788.1\|WP_110628579.1\|3406380_3406734_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NZ_CP029788.1\|WP_110628575.1\|3402845_3403658_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP029788.1\|WP_110628577.1\|3404295_3405576_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|367673
NZ_CP029788.1\|WP_110628578.1\|3405668_3406253_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP029788.1\|WP_110628586.1\|3412596_3413721_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP029788.1\|WP_110628588.1\|3414270_3415449_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP029788.1\|WP_110628583.1\|3411151_3411658_-\|CGNR-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|378696
NZ_CP029788.1\|WP_110628585.1\|3412158_3412554_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|380093
NZ_CP029788.1\|WP_110628590.1\|3415971_3417111_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP029788.1\|WP_110628587.1\|3413825_3414185_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133388
NZ_CP029788.1\|WP_162655720.1\|3415453_3415951_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_CP029788.1\|WP_110628592.1\|3417814_3419089_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP029788.1\|WP_110628574.1\|3402398_3402767_+\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NZ_CP029788.1\|WP_110628581.1\|3408078_3409236_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP029788.1\|WP_110628580.1\|3406730_3408008_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NZ_CP029788.1\|WP_110628591.1\|3417254_3417782_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP029788.1\|WP_110628576.1\|3403676_3404303_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319790

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110628582.1\|3409447_3410791_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP029788.1\|WP_110628585.1\|3412158_3412554_+\|VOC-family-protein	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	6.86689e-22
NZ_CP029788.1\|WP_110628584.1\|3411784_3412144_+\|VOC-family-protein	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	4.63584e-26
NZ_CP029788.1\|WP_110628579.1\|3406380_3406734_+\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	8.42836e-28
NZ_CP029788.1\|WP_110628575.1\|3402845_3403658_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.82457e-24
NZ_CP029788.1\|WP_110628577.1\|3404295_3405576_-\|LCP-family-protein	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	3.83544e-56
NZ_CP029788.1\|WP_110628578.1\|3405668_3406253_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	1.67073e-50
NZ_CP029788.1\|WP_110628586.1\|3412596_3413721_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	8.13669e-107
NZ_CP029788.1\|WP_110628588.1\|3414270_3415449_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	1.66311e-145
NZ_CP029788.1\|WP_110628583.1\|3411151_3411658_-\|CGNR-zinc-finger-domain-containing-protein	gnl\|CDD\|378696	pfam11706, zf-CGNR, CGNR zinc finger. This family consists of a C-terminal zinc finger domain. It seems likely to be DNA-binding given the conservation of many positively charged residues. The domain is named after a highly conserved motif found in many members of the family.	9.60595e-17
NZ_CP029788.1\|WP_110628590.1\|3415971_3417111_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.27705e-178
NZ_CP029788.1\|WP_110628587.1\|3413825_3414185_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133388	cd01282, HTH_MerR-like_sg3, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	7.94825e-43
NZ_CP029788.1\|WP_162655720.1\|3415453_3415951_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	1.20649e-86
NZ_CP029788.1\|WP_110628592.1\|3417814_3419089_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.51952e-34
NZ_CP029788.1\|WP_110628574.1\|3402398_3402767_+\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	4.38422e-18
NZ_CP029788.1\|WP_110628581.1\|3408078_3409236_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NZ_CP029788.1\|WP_110628580.1\|3406730_3408008_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	2.2603e-136
NZ_CP029788.1\|WP_110628591.1\|3417254_3417782_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	7.80638e-26
NZ_CP029788.1\|WP_110628576.1\|3403676_3404303_-\|HAD-IA-family-hydrolase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.15192e-29

>NZ_CP029788.1|WP_110628582.1|3409447_3410791_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MALKITVIGTGYLGATHAAAMAELGFEVLGLDVVQEKIDMLRRGEVPMYEPGLEELLRKHVDGIEGSTGRLRFTTDYAEVAAFGDVHFVCVNTPQRHGEYAADMSYVDAAIASLAPHLTGPALVVGKSTVPVGSAERLAAYLAAHAPAGADAELAWNPEFLREGFAVQDTLRPDRIVVGVRSDRAEKLLREVYATPISEGTPFVVTDFPTAELVKTSANSFLATKISFINAMAEVCEAAGGDVAKLAEAIGYDDRIGKKFLRAGIGFGGGCLPKDIRAFMARAGELGADQALTFLREIDSINMRQRGQMVELARQALGGGPFLGKRVAVLGASFKPDSDDVRDSPALNVAGQIHLQGGQVTVYDPKGMVNARRIFPTLGYADTALDAVRGADVVLHLTEWREFRELDPAELGEVAAARVILDGRNALDPELWRRAGWTYRAMGRPTA
>NZ_CP029788.1|WP_110628581.1|3408078_3409236_-|acyl-CoA-dehydrogenase
MAGSADFDLYRPSEEHDMLRDAVRSLAEAKIAPHAAAVDEEARFPQEAHDALVANDLHAVHVPEEFGGAGADALATVIVIEEVARVCASSSLIPAVNKLGSLPVILSGSEELKKKYMTPLAKGDGMFSYCLSEPDAGSDAAGMKTRAVRDGDYWVLNGVKRWITNAGVSEYYTVMAVTDPTKRSKGISAFVVEKSDEGVSFGAPEKKLGIKGSPTREVYLDNVRIPADRMIGEEGTGFMTAMKTLDHTRITIAAQALGIAQGALDYAKGYVQERKQFGKPIADFQGIQFMLADMAMKISAARALTYQAAAASERGDADLTYLGAAAKCFASDVAMEVTTDAVQLLGGYGYTRDYPVERMMRDAKITQIYEGTNQVQRIVMARNLP
>NZ_CP029788.1|WP_110628580.1|3406730_3408008_+|RNA-polymerase-sigma-factor
MTGQRAADSVEAVFREDRSRLLALLAARFGDLDLAEETSSEAIEAALQRWPVDGVPDKPLAWLLTTARRKAVDRVRRDRVHARRLAALWVENDRAAAAAAAEPGFDDIPDERLQLFFTCCHPALSPEARIALTLRFLGGLTTPEVARALLVPTATMAQRIVRAKRKIRTARIPFRVPDPDELPGRLPSVLRVVYLIFTEGYAASSGDDLLRPELADEAIRLARLLHRLLPREREVTGLLALLLLTDARRAARTDATGAQVLLEDQDRTLWDADLIAEGQRLVVPALTGSGVGPYAVQAAIAALHDEAADLESTDWPQIVGLYDVLFALDPSPLVALNRAVAVAMCDGPEAGLVLLDELAGAEELRGYHLLPAARADLLRRLGRTAEAAEAYRTALDLAGNGPERATFARRLAELERGDRTGPAGD
>NZ_CP029788.1|WP_110628579.1|3406380_3406734_+|hypothetical-protein
MKYLLLINTAAPDSTEEMPADGPTVEEFLAFEKAVTDAGVKLDGNALDLANATTVRVRVDGERVVTDGPFAETREIVGGYYLIDVPDLDAALDWAARCPGARYGTVEVRTVWEPDQA
>NZ_CP029788.1|WP_110628578.1|3405668_3406253_+|acyl-CoA-thioesterase
MSPRHKVEAMTDQASAADSATPEIPGKPTAASRTTLSHIMTHNDTNLLGTVHGGVIMKLVDDAAGAVAGRHSGGPAVTASMDEMVFLEPVRVGDLVHVKAQVNWTGRTSMEVGVRVLAERWNESAPPTQVGSAYLVFAAVDADGKPRPVPPVIPETERDKRRYQEAQIRRTHRLARRRAIRELREKRAAEGFED
>NZ_CP029788.1|WP_110628577.1|3404295_3405576_-|LCP-family-protein
MNDWPQGWPDDNRGTPRYGRGSAGAQPEGARVMRQVRRGPAAPPGQGGYGGQIPPQPSYVDGGEGPDDGYGYDSGYNTGQVYGGSGGRGPAGTAGQTARPAPNWRRRIKWTAITVATVVVVTTVGTYFWADSKLRREVDLSTVIDRPEAGDGTNYLIVGSDSREGMSKEDKKKLHTGSAEGKRTDSMMILHVGDNGDTLISLPRDSDVEIPTYKGSESGKTFQGSGRHTKLNAAYAEDGPTLLVRTVEFNTGLHIDHYVEIGFAGFANIVDAVGGVDLTIDKPFKDKYSGADFQAGKQTLNGEQALAFVRTRHAFAASDLERTKNQQKFLAALAHQVATPSTVLNPFKLYPTMGAGLDSLIVDKDMSLWDLASMFFAMKGVNGGDGTSMNMPISGSSGGNLVWDKAKVKQLVNELNSDEKVTVKGD
>NZ_CP029788.1|WP_110628576.1|3403676_3404303_-|HAD-IA-family-hydrolase
MTEPTGGRPPFDAVLCDVDNVIRFYDNSGLLALERTAGLAEGTTMKVAFAPDVDLPVLLGQVTPREWVESIAAGLAGLVPDDTAWELGSTLLELPFRADEDVVALLRRARIRVPLVLVTNATLALEDDLAGLGLADLADDVVSSARVGLAKPDPRIFRLAASRAGVRPERCLFVDDTEENVTAAEALGMTAVHFRETADLEKALAPLL
>NZ_CP029788.1|WP_110628575.1|3402845_3403658_+|class-I-SAM-dependent-methyltransferase
MIDTTEAFDAAEREMWDGRAEAYAGSFARLCAYPVPALLDAAGVTAGSHVLDVGTGTGTAAVAALERGARVAAVDAEAGMVAAARGRGVDARVAVLPELPYEDGEFDAVVANFVVNHVGRPRAALAELRRVLRPGGRLAVTLWGARRGAGQELLGRAVQAAQAVPAAGLPRLDPAEDFPRTPQGVAGLLTEAGFTGVRAEETAWDHRATRDEWWSGAAGGVATIGRVVTAQTPETIARIRSAYDRLADELTDTDGRLRLPHVAVLASGTA
>NZ_CP029788.1|WP_110628574.1|3402398_3402767_+|four-helix-bundle-copper-binding-protein
MTMNQPGTAAAMSKEMQECVEACMACHTVCEETMSSCMQMGGQAQMQIMRALIDCSEMTRMCADMMMRRSPLSAEMCAMCARACDMCAEACMAMPDDAQMMRCAESCRRCADMCRAMAGATM
>NZ_CP029788.1|WP_110636574.1|3401822_3402116_-|hypothetical-protein
MTAIGACLTPQLGRVTVRLPQELAEAAVAAWRRDEHAGQDSGDPESPGRYALRDQAAELALIGLAISERGRGDGTDVVVDLDIAAVGAAVRAAEQQP
>NZ_CP029788.1|WP_110628583.1|3411151_3411658_-|CGNR-zinc-finger-domain-containing-protein
MTERSPAPGGLALVESLVNTLDIESGGDALDTAEGRARFGLAEPDVAAARELRESLRVALLAHAGHPPHRAVTPLGELLAAAPLVVTVDERDGSASLAAADEGPLLSRVAAAVAEAVVAGTWTRLKACEAVTCHWAYYDRSPAGRGRWCSMQVCGARAKMRRYRSKDA
>NZ_CP029788.1|WP_110628584.1|3411784_3412144_+|VOC-family-protein
MSVAKLGAVVLDCPDPGALAAFYAEVLGGTVEGEGDWVDLKVPGGQALAFQAAEGFVPPRWPSAEHSQQFHLDLTAEDLDAAEEKVLALGAKPLDADDRSRTFRVYADPAGHPFCLCAC
>NZ_CP029788.1|WP_110628585.1|3412158_3412554_+|VOC-family-protein
MAPFARLRNVVVDCPDPRALARFYAEIVGGEPAAEDPSWVVLRVPGGPRLTFQLSPDHTPPEWPRADRNAQQFHLDLDAGATWEEVDAAEKRVLALGARPLQRVDEEDFRVYADPAGHPFCLCRIDVAERV
>NZ_CP029788.1|WP_110628586.1|3412596_3413721_-|membrane-dipeptidase
MADLQDDLHTTPEIGALPVERPTGATVADAFPAEAYAAALEAVDRVRALLAEHPVADGYSGLPRALRRLPWYDLELGETDVATDVPRLREGHVGALFWSLHLPDDARPDRALSATLDQLDLARTVIRDHPEGLRLARTAGQVIDARNCGRVAVVLGPATAAALDDSLGILRVLRTLGVRVLTLAGTSWASEAGLTRFGEEVVREMNRLGVLADLSGASDATIARTLTLSRTPVLCSRSAARALRPHPDNLPDDLLAALGAAGGVCMVPLAAEQTGPTLRDVAEHLDHIRAVAGPESVGLSGTFDSGAAHPQDLTDTACYPPLIAELLRRGWPETDLALLTWGNVQRVLRSADFAARAAQERREPSAARTVELDD
>NZ_CP029788.1|WP_110628587.1|3413825_3414185_-|MerR-family-transcriptional-regulator
MRIGELARRTGVSERSLRYYEKQGLLRAERTPGGHREYPEGAVDRVIRIQELFAAGLHSSRIAQLLPCMRDSDGGPSAIATPRLVEELAAERERIDRTIRDLQRSRETLDEVIATAAGG
>NZ_CP029788.1|WP_110628588.1|3414270_3415449_-|membrane-dipeptidase
MTSTEAARELLAEFPVVDGHNDLPWALREQVSYDLAARDIAVDQSAHLHTDLRRLRAGGVGAQYWSVYVRSDLPDAVPATLEQIDCVRRLVDRHPADLRLALTAADMEAARREGRIASLMGAEGGHSIANSLGTLRGLYALGVRYLTLTHNDNVDWADSATDEPNVGGLSAFGREVVREMNRLGMLVDLSHVAATTMRDALDTSTAPVIFSHSSSRAVCDHPRNIPDDVLERLPANGGMAMVTFVPKFVLQAAVEWTAAADENMRAHGFHHLDTTPEAMKVHRAFEERHPRPVATVATVADHLDHMREVAGIDHLGIGGDYDGTAFTPEGLDDVSGYPNLIAELLDRGWSKADLAKLTWQNAVRVLGAAEDVARHLQATRAPSHATIESLDG
>NZ_CP029788.1|WP_162655720.1|3415453_3415951_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MGSDSDWPVMEAAAKALDEFEIDYEVDVVSAHRMPREMIAYGERAAERGLKVIIAGAGGAAHLPGMLASVTPLPVIGVPVPLKYLDGMDSLLSIVQMPAGVPVATVSVAGARNAGLLAARILAAHDEELLGRMKEFQQDLNDQATEKGKRLRAKVEGSGGFGFGK
>NZ_CP029788.1|WP_110628590.1|3415971_3417111_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MTFPVVGMVGGGQLARMTHEAGIPLGIRFKLLSDTPQDSAAQVVNDVVVGDYRDLDTLREFARGCDVITFDHEHVPTEHLRALEADGIPVRPGPDALVHAQDKGVMRAKLSSIGVPCPRHRIVSDPADVAAFAAEGDGFPVVLKTVRGGYDGKGVWVVDSAEEAEEPFKAGVPVLAEEKVDYVRELAANVVRSPHGQAVAYPVVESQQVNGVCDTVIAPAPGLDGALALKAEQMALTIAKELDVVGHLAVELFQTRDGRILVNELAMRPHNSGHWTMDGAITSQFANHVRAVLDLPLGDPRPRATWTVMVNVLGGDFPDMYSAYLHCMARDPQLKIHMYGKDVKPGRKVGHVNTYGDDLDDVLERARHAAGYLRGTITE
>NZ_CP029788.1|WP_110628591.1|3417254_3417782_+|GtrA-family-protein
MGQGSSGLHRLTHEIAKFGAVGAFGMVVNFAVSNALWHLTSLQAVRANVIATVVAIACNYIGFRYFTYRDRDKTDRTREMILFLAFSAIGLVIENGILFAAIYGFGWDSAIERNVFKFLGIGIATLFRFWSYRTWVFRALPVAEPKAETLAGQEPVAADEPVPAPAPPARPRQRV
>NZ_CP029788.1|WP_110628592.1|3417814_3419089_-|HAMP-domain-containing-histidine-kinase
MRRRLIQSTLAVVLVVIAVFGISLVIVETRTISSSAQERVDLEALRLASIVDSRLLSSEEVTEDILRGQVTQDRYAVVRMPGQRPIEVGDRPTGEVIRSKAARGDQGETVVVEEPRSTVTEEVGRTLLIIALVALLAVIAAVLLAIRQANRLASPLTDLAETAERLGSGDPRPRHKRYGVPELDRVADVLDASAERIGRMLTAERRLAADASHQLRTPLTALSMRLEEITLTDDLDTVKEEANVALTQVERLTDVVERLLTNSRDPRNGSAVTFDLDEVIQQQIAEWRPAYRSAGRAIVSSGKRHLHAVGTPGAVAQVLAALIENSLMHGGGTVALRTRVTGNQAVVEVTDEGPGVPADLGARIFERTISGRNSTGIGLAVARDLAEADGGRLELLQTSPAVFGLFLSRTPPAKKQPEDEPTVR

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Crispr_ID: NZ_CP029788_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_7

4894303-4894403

Orphan

Consensus_repeat	Method
TCCCCGGAAGCCGGATCAGGCAGCCGGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_7

>merge|NZ_CP029788|7|4894303-4894403|CRISPRCasFinder
TCCCCGGAAGCCGGATCAGGCAGCCGGGCCACCCAGCCAGTCGTCCGCGGGGTCAGCCTGTAAGGGCCCCTTCCCCGGAAGCCGGGTCAGGCAGCCGGGCC

>NZ_CP029788|7|7|4894303-4894403|CRISPRCasFinder
TCCCCGGAAGCCGGATCAGGCAGCCGGGCC	ACCCAGCCAGTCGTCCGCGGGGTCAGCCTGTAAGGGCCCCT
TCCCCGGAAGCCGGGTCAGGCAGCCGGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110636922.1\|4890182_4890707_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP029788.1\|WP_110629775.1\|4887076_4888345_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238618
NZ_CP029788.1\|WP_110629787.1\|4901032_4901851_+\|DUF1396-domain-containing-protein	unknown	unknown	gnl\|CDD\|369238
NZ_CP029788.1\|WP_110629785.1\|4899206_4899932_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP029788.1\|WP_110629782.1\|4897284_4897572_+\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NZ_CP029788.1\|WP_110629778.1\|4890788_4892234_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP029788.1\|WP_110629780.1\|4893231_4894296_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237552
NZ_CP029788.1\|WP_110636926.1\|4895581_4896808_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP029788.1\|WP_110629784.1\|4898693_4899128_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP029788.1\|WP_110629788.1\|4902142_4902673_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP029788.1\|WP_110629777.1\|4889638_4890067_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239537
NZ_CP029788.1\|WP_110629774.1\|4886357_4887011_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187554
NZ_CP029788.1\|WP_110629786.1\|4900052_4900946_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110629783.1\|4897652_4898513_+\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP029788.1\|WP_110629789.1\|4902790_4903180_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP029788.1\|WP_110629773.1\|4886080_4886293_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_003948671.1\|4888881_4889046_+\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
NZ_CP029788.1\|WP_110629776.1\|4889168_4889630_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|379194
NZ_CP029788.1\|WP_110629790.1\|4903718_4907204_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP029788.1\|WP_110629779.1\|4892297_4892678_+\|DUF3291-domain-containing-protein	unknown	unknown	gnl\|CDD\|378694

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110636922.1\|4890182_4890707_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	7.96369e-11
NZ_CP029788.1\|WP_110629775.1\|4887076_4888345_-\|amidohydrolase-family-protein	gnl\|CDD\|238618	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.	5.07587e-89
NZ_CP029788.1\|WP_110629787.1\|4901032_4901851_+\|DUF1396-domain-containing-protein	gnl\|CDD\|369238	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein. This entry consists of several lipoproteins mainly from Mycobacterium species, collectively known as the LppX_ LprAFG family. Proteins in this entry include LprG, LppX, LprF and lprA.	4.98742e-08
NZ_CP029788.1\|WP_110629785.1\|4899206_4899932_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	7.48585e-147
NZ_CP029788.1\|WP_110629778.1\|4890788_4892234_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.15505e-89
NZ_CP029788.1\|WP_110629780.1\|4893231_4894296_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237552	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase.	0
NZ_CP029788.1\|WP_110636926.1\|4895581_4896808_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP029788.1\|WP_110629784.1\|4898693_4899128_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	4.26794e-96
NZ_CP029788.1\|WP_110629788.1\|4902142_4902673_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	1.98444e-68
NZ_CP029788.1\|WP_110629782.1\|4897284_4897572_+\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	3.70499e-19
NZ_CP029788.1\|WP_110629774.1\|4886357_4887011_-\|NAD(P)H-binding-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.20366e-56
NZ_CP029788.1\|WP_110629777.1\|4889638_4890067_+\|MaoC-family-dehydratase	gnl\|CDD\|239537	cd03453, SAV4209_like, SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.	1.81063e-59
NZ_CP029788.1\|WP_110629783.1\|4897652_4898513_+\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	2.34174e-79
NZ_CP029788.1\|WP_110629789.1\|4902790_4903180_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	2.33133e-42
NZ_CP029788.1\|WP_003948671.1\|4888881_4889046_+\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	3.68173e-22
NZ_CP029788.1\|WP_110629776.1\|4889168_4889630_+\|MaoC-family-dehydratase	gnl\|CDD\|379194	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. It is clear from the structures of bacterial members of MaoC dehydratase, pfam01575, that the full-length functional dehydratase enzyme is made up of two structures that dimerize to form a whole. Divergence of the N- and C- monomers in higher eukaryotes has led to two distinct domains, this one and MaoC_dehydratas. However, in order to function as an enzyme both are required together.	2.61536e-40
NZ_CP029788.1\|WP_110629790.1\|4903718_4907204_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP029788.1\|WP_110629779.1\|4892297_4892678_+\|DUF3291-domain-containing-protein	gnl\|CDD\|378694	pfam11695, DUF3291, Domain of unknown function (DUF3291). This bacterial family of proteins has no known function.	0.000186473

>NZ_CP029788.1|WP_110629780.1|4893231_4894296_+|UDP-N-acetylmuramate-dehydrogenase
MQVLHDAPLAPLTTFRLGGPADRLVTATTDAEVIDAVREADATGTPLLVIGGGSNLVIGDKGFAGTALRIATTGFELTGTTLELAAGEVWTDAVARTVDAGLAGIECLAGIPGSAGATPIQNVGAYGQEVSSTITEVIAYDRRAHETVTLTNADCVFTYRHSRFKADPDRYVVLRVRFALEDAGGLSAPLKYAETARALGVEPGDRVPLAEARETVLKLRAGKGMVLDPEDHDTWSAGSFFTNPILTDEQFAAFHARVRARLGDGVEPPAYPAGPGHPGHTKTSAAWLIDKAGFTKGYGTGPARISTKHTLALTNRGEATTEDLLALAREVVAGVREAFGITLVNEPVTVGVSL
>NZ_CP029788.1|WP_110629779.1|4892297_4892678_+|DUF3291-domain-containing-protein
MPTLPWTVPNTPPAGADVHVFASRFETRTFLGAVRFLMRTAGVWRQVGRAPGAYGASLKAQPFRRTFWTLSAWESAEALKAFAGGGVHAPVSRGLAGEMRDVRFASWTTSSDELPVRWEEAARRLR
>NZ_CP029788.1|WP_110629778.1|4890788_4892234_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSQQTAPRGGAAWALVITSVAGFMAALDNLVVTTALPSLRKDLGGALDDLEWTVSAYTLTFAVLLMFGAALGDRFGRRRLFQVGVTIFTGASAAAAMAPGIGSLIAARAAQGVGAAVMMPLTLTLLTAAVPAAKRGMAYGIWGAVNGLAVASGPLIGGSLTEHISWHWIFWLNVPLGVALLPLARLRLAESYGAGARLDLPGTLLASGGLFGIVYGLVRGPADGWTSPLVLTGLFAGSALLAAFVLHGMRAKNPMLPMRLFRSRAFSGINAASLLMFLGMFGSIFLLSQYMQSVLGYSPTQAGLRMLPWTGMPMLVAPIAGILSDRIGGRPVVATGLFFQAAGLAYLASVATTDASYAAQLPGLIISGIGMALFFAPASNLVMSSVRASEQGIASGANNALREVGGALGIAIMSSIFSARGGYESGQAFVDGLRPALVTGAGVVALAGVAALVIPRRRAAERDGSASPARSSSPALETASR
>NZ_CP029788.1|WP_110636922.1|4890182_4890707_+|TetR/AcrR-family-transcriptional-regulator
MSAEERRESVIRAATTEFARGGYHGTSTEAIAKRVGVSQPYLFRLFPGKKAIFLAVAQRCVDDTIRTFEKAAEGLEGEEALHAMGEAYTKVIAEQPERLMMQMQMYLAVAAAEAEGDSEFGEAVRAGWTRLWDTILLSLGADVEQTTTFMAHGMLINCLVAMGFPRDHRVWEGF
>NZ_CP029788.1|WP_110629777.1|4889638_4890067_+|MaoC-family-dehydratase
MTAKIAYDDVEVGTELPAQSFPVTRATLVQYAGASGDFNPIHWNEKFAKEVGLPDVIAHGMFTMAEAIRVVTDWTGDPGAVVEYGVRFTKPVVVPNDDQGAVIEVSGKVAAKLDDNTVRVDLTATSAGQKVLGMSRAVVRLA
>NZ_CP029788.1|WP_110629776.1|4889168_4889630_+|MaoC-family-dehydratase
MALDQSFVGRSYPPTEPYEVGREKIREFAEAVGDANPAYTDPEAAKALGHPDVIAPPTFVFAITFKAAGQVIQDPQLGLDYSRVVHGDQKFSYVRPVRAGDRLTVTSTIEAIKSMAGNDILDIRGEVHDEAGEHVVTAWTKLVARAADTEGEA
>NZ_CP029788.1|WP_003948671.1|4888881_4889046_+|50S-ribosomal-protein-L33
MAATDVRPKITLACVECKERNYITKKNRRNNPDRLEMKKHCPRCNAHTAHRETR
>NZ_CP029788.1|WP_110629775.1|4887076_4888345_-|amidohydrolase-family-protein
MPDSQPQPPHATPPPSGPADASLLLCGARLTDGRRVDVRLVGGRIEAVGTAGSLAGPPGRGGTRVDLGGYLLLPAPAEPHAHADTALSADADGPVPYDAQDVQRRATEAALLQLGHGATAQRAHVRVGDVQGLGALAAVLQARRALRGLVELTTVAMPRVLTGVAGADGLAVLRDAMKMGASVVGGCPDLDPDPTGYVEAVLEVASEHGCPVDLHTDAADPARLARVAAMAGGLRPGVTISPCGGLDRLPADAAARTADQLAAAGVAVVCLPQGGCGGVEARGTQGRGAAPVRLLRAAGVRLAAGSGALRDACNPVGRGDPLEAAYLLASREGLRPEDAYDAVSSAARAVLGLPEVRVEAGFPAELLAVRGDQLAGALSLAYSRIVVHRGRVVARTSAVREFCDSAAAVELGLPRQGRNELS
>NZ_CP029788.1|WP_110629774.1|4886357_4887011_-|NAD(P)H-binding-protein
MRIVIAGGHGQIALRLERLLAARGDEVAGLIRKAEQGDDLREAGAEPVLLDLESASVEEVAAHLQGADAAVFAAGAGPGSGVARKDTVDKGAAVLFADAAVRARVRRFVVVSSMGADARHQGDDVFDVYLRAKGEADDHVRGLDLDWTILRPGSLTNDAGTGLVRLEARTGRGPVPRDDVAAVLAELVDTPATTGLTLELVSGSTPVSVAVKSVAGN
>NZ_CP029788.1|WP_110629773.1|4886080_4886293_+|hypothetical-protein
MSSRRRHCPECRREIAVVAGRFARHDPPGARGNGALTSCPGSRRPAQLGAVQPSLDGYVVPEIPGQLPLF
>NZ_CP029788.1|WP_110636926.1|4895581_4896808_-|pyridoxal-phosphate-dependent-aminotransferase
MSAATPPTERRVSARIGAISESATLAVDAKAKALKAAGRPVIGFGAGEPDFPTPDYIVEAAVEACKNPKFHRYTPAGGLPELKAAIAQKTKRDSGYEVEAAQVLVTNGGKQAIYEAFAAILDPGDEVIVPAPYWTTYPESIRLAGGVPVEVVADETTGYRVSVEQLEAARTENTKVLLFVSPSNPTGAVYTREQIEEIGRWAAEKGLWVLTDEIYEHLVYGDAEFHSLPVVVPELADKCIVVNGVAKTYAMTGWRVGWVIGPKDVVKAATNLQSHATSNVSNVAQAAALAAVSGDLSAVEKMKEAFDRRRKTIVRMLNEIDGVLCPEPEGAFYAYPSVKGLLGKEIRGKRPQDTVELAALILEEAEVAVVPGEAFGTPGYLRLSYALGDEDLVEGVSRIQKLLAEARD
>NZ_CP029788.1|WP_110629782.1|4897284_4897572_+|preprotein-translocase-subunit-SecE
MADAVGSIDTPDAQDEAAETRKKTRKGGKRAKKGPLKRLALFYRQIIAELRKVVWPTRNQLTSYTTVVIFFVIVMIALVTVIDYGLSHAAKYVFG
>NZ_CP029788.1|WP_110629783.1|4897652_4898513_+|transcription-termination/antitermination-protein-NusG
MSDQNLNDAVEPRGEGVESVDDELDIVGGADEDLDEVEAADAEADEPAEEAAVHAEDVEDADEEAAEDAEESAEAEEETAPVDPVEALREELRTLPGEWYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGYVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEGKPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVELSFDQIQKN
>NZ_CP029788.1|WP_110629784.1|4898693_4899128_+|50S-ribosomal-protein-L11
MPPKKKKVTGLIKLQIQAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVDKGSGEPHKTKVAKITQAQVREIAQTKMPDLNANDLDAAAKIIEGTARSMGVTVEG
>NZ_CP029788.1|WP_110629785.1|4899206_4899932_+|50S-ribosomal-protein-L1
MSKRSKALKAADAKVDREKLYAPLEAVRLAKETSTTKFDATVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAEAARAAGADIVGADELIDEVSKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVTKAVTDIKGGKIEFRVDKHSNLHFIIGKASFDDAKLVENYGAALEEILRLKPSAAKGRYIKKAAITTTMGPGIPVDPNRTRNLLVEEDPAAV
>NZ_CP029788.1|WP_110629786.1|4900052_4900946_+|hypothetical-protein
MRHRGTARPRGAAPTTTALLAAVAALTALTGCGGSDDGAARPDATGGTVSAAPRPDPRTADALRAVERAVAGAGSARISSTTAMGDLLSTRTEGALDWAGDSTGTLRITYTGGSLTEPLRKLGTTTMEARLLPDAYYARVGEDFARRMGGRHWIRYDFDDLAELPGDSGAYLRDQLRDTAPVLPVRLLLASGTVRETGRETVGGRATRHYTGTVDVSALGDVALRRQLTDAGVTAEQVDIWVDEKNLLVKKVEKAEMTSGPMTQTAYYDTYGVRVAVQRPPDGDTEDFEALMGGQGS
>NZ_CP029788.1|WP_110629787.1|4901032_4901851_+|DUF1396-domain-containing-protein
MKRAVSTAALAGLLLAGAVGCGKGEQSPDLEPAAAVARAAKNADAVTSFRYRLDGRVPGEGRVRGEAAMSTKPPALSMKITPEDQADAGQVEIRFVDKAMYINGGAEAAGEMDGKSWIKFDMSKAGKEANPLAGAGATAEQNPAAQSTFLAGADDVREVGAETVDGVKTTHYQGTATLDALEKSLKGTDKASRDKRQKSLDEFEKLGIDKLSMDLWVDGEDHTKRFRMRGDADKGPLDMTITFYDVNKPVTVTAPPAKDVADLAEMMKGVQG
>NZ_CP029788.1|WP_110629788.1|4902142_4902673_+|50S-ribosomal-protein-L10
MARPDKAAAVAELTDKFRNSSAAVLTEYRGLTVAQTRKLRLALGENAQYAVVKNTLTKIAANEAGITTLDDLFNGPTAVAFVTGDPVESAKGLRDFAKENPNLVIKGGVLDGKALSADEIKKLADLESREVLLSKLAGAFKAKQSQAASVFQALPSKLVRTVDALRAKQAEQGGAE
>NZ_CP029788.1|WP_110629789.1|4902790_4903180_+|50S-ribosomal-protein-L7/L12
MAKLTQDELLAQFEEMTLIELSEFVKAFEEKFDVTAAAAAPVVVAGGAAGGAAAEAEEEKDEFDVILTGAGDKKIQVIKVVRELTSLGLKEAKDLVDGTPKPVLEKVNKEQADKAAEALKGAGASVEVK
>NZ_CP029788.1|WP_110629790.1|4903718_4907204_+|DNA-directed-RNA-polymerase-subunit-beta
MAASRTASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNTAWQSRVEEALENGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAPLFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSIDKTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEFGEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKVNKKLGTDTPLDAGILTVEDIIATIKYLVKLHAGETETVGDNGQPVVVETDDIDHFGNRRLRSVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLATYGRVNAFGFVETPYRKVVDGQVTDEVNYLTADEEDRFVIAQANAPLTADMRFEEARVLVRRRGGEVDYVAPEDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQAVPLIKSEAPLVGTGMEYRSAVDAGDVVKAEKDGVVQEVSADYITTANDDGTYITYRLAKFSRSNQGTSVNQKVIVNEGDRVITGQVLADGPATQNGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVIAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFDREEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVDIILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLADEWAQRLQAIGADKVEPGTNVATPVFDGAREDELAGLLQHTIPNRDGERMVLPSGKARLFDGRSGEPFPDPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEELGIDLSRREPSSVEEV

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Crispr_ID: NZ_CP029788_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_8

5325477-5325789

Orphan

Consensus_repeat	Method
CGGGACGCCCGCCGGCGGAGGGCGGACG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP029788_8

>merge|NZ_CP029788|8|5325477-5325789|CRISPRCasFinder
CGGGGCGCGGGCCGGGCGTGGTGGGTCGTGCGCTCTTGGAGGCCGGTCGGGGGCCGGAGGCCGCGGGACGCCCGCCGGCGGAGGGCGGACGGGTGCCCGGGGCGGACGGGCGCCCGCCGGCAGAGGGCGGAGGAGTGCCCGGGGCGGACGGGCGCCCGCCGGCGGAGGGCGGACGCGGACCTGGGGTGGGGGTGCGCGCGTCGTCGGAGGCGGGCCGCGCGGCGGGACGCCCTGCGGCGGAGGAGGGCCGCGCACCCGGAGCGCCCGGACGCGCACCGCTCTTCGGCGGCCGCCCGTCGCCGGAGGACGGACT

>NZ_CP029788|8|8|5325477-5325789|CRISPRCasFinder
CGGGGCGCGGGCCGGGCGTGGTGGGTCG	TGCGCTCTTGGAGGCCGGTCGGGGGCCGGAGGCCG
CGGGACGCCCGCCGGCGGAGGGCGGACG	GGTGCCCGGGGCGGACGGGCGCCCGCCGGCAGAGGGCGGAGGAGTGCCCGGGGCGG
ACGGGCGCCCGCCGGCGGAGGGCGGACG	CGGACCTGGGGTGGGGGTGCGCGCGTCGTCGGAGGCGGGCCGCGCGG
CGGGACGCCCTGCGGCGGAGGAGGGCCG	CGCACCCGGAGCGCCCGGACGCGCACCGCTCTTCG
GCGGCCGCCCGTCGCCGGAGGACGGACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_162655596.1\|5328791_5349533_+\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
NZ_CP029788.1\|WP_110630124.1\|5375036_5376077_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274922
NZ_CP029788.1\|WP_110630115.1\|5326123_5327212_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP029788.1\|WP_110630111.1\|5321445_5321688_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP029788.1\|WP_162655595.1\|5323094_5324102_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP029788.1\|WP_110630112.1\|5321697_5322906_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|272979
NZ_CP029788.1\|WP_110630116.1\|5327296_5327560_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP029788.1\|WP_110630122.1\|5363793_5373699_+\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
NZ_CP029788.1\|WP_110630108.1\|5319142_5319520_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP029788.1\|WP_110630118.1\|5327995_5328469_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370266
NZ_CP029788.1\|WP_110630107.1\|5318349_5319030_+\|DUF1707-and-DUF2154-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP029788.1\|WP_110630109.1\|5319609_5320644_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP029788.1\|WP_110630106.1\|5316487_5318158_-\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|237955
NZ_CP029788.1\|WP_110630110.1\|5320770_5321298_+\|DUF4245-domain-containing-protein	unknown	unknown	gnl\|CDD\|379430
NZ_CP029788.1\|WP_110637037.1\|5324952_5325345_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110630120.1\|5349534_5362152_+\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
NZ_CP029788.1\|WP_110630117.1\|5327552_5327822_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP029788.1\|WP_110630114.1\|5324152_5324896_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP029788.1\|WP_162655597.1\|5362148_5364659_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|380463
NZ_CP029788.1\|WP_110630123.1\|5373695_5374970_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_162655596.1\|5328791_5349533_+\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP029788.1\|WP_110630124.1\|5375036_5376077_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274922	TIGR04020, non-ribosomal_peptide_synthetase, natural product biosynthesis luciferase-like monooxygenase domain. This model describes a subfamily within the bacterial luciferase-like monooxygenase (LLM) family that regularly occurs within large non-ribosomal protein synthases/polyketide synthases, but also as small proteins. The LLM family includes members that bind either FMN or F420, and FMN is more likely in this case because many members are from species that lack F420 biosynthesis capability. An example member is the MupA protein of mupirocin biosynthesis in Pseudomonas fluorescens NCIMB 10586.	8.92296e-172
NZ_CP029788.1\|WP_110630115.1\|5326123_5327212_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP029788.1\|WP_110630111.1\|5321445_5321688_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	4.74738e-18
NZ_CP029788.1\|WP_162655595.1\|5323094_5324102_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP029788.1\|WP_110630112.1\|5321697_5322906_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	4.98881e-160
NZ_CP029788.1\|WP_110630116.1\|5327296_5327560_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.73682e-15
NZ_CP029788.1\|WP_110630122.1\|5363793_5373699_+\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP029788.1\|WP_110630108.1\|5319142_5319520_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	4.51405e-20
NZ_CP029788.1\|WP_110630118.1\|5327995_5328469_-\|hypothetical-protein	gnl\|CDD\|370266	pfam09056, Phospholip_A2_3, Prokaryotic phospholipase A2. The prokaryotic phospholipase A2 domain is predominantly found in bacterial and fungal phospholipases, as well as various hypothetical and putative proteins. It enables the liberation of fatty acids and lysophospholipid by hydrolysing the 2-ester bond of 1,2-diacyl-3-sn-phosphoglycerides. The domain adopts an alpha-helical secondary structure, consisting of five alpha-helices and two helical segments.	5.58386e-48
NZ_CP029788.1\|WP_110630107.1\|5318349_5319030_+\|DUF1707-and-DUF2154-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	4.44503e-18
NZ_CP029788.1\|WP_110630109.1\|5319609_5320644_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP029788.1\|WP_110630106.1\|5316487_5318158_-\|fumarate-hydratase	gnl\|CDD\|237955	PRK15389, PRK15389, fumarate hydratase; Provisional.	0
NZ_CP029788.1\|WP_110630110.1\|5320770_5321298_+\|DUF4245-domain-containing-protein	gnl\|CDD\|379430	pfam14030, DUF4245, Protein of unknown function (DUF4245). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 188 and 235 amino acids in length.	2.97281e-55
NZ_CP029788.1\|WP_110630114.1\|5324152_5324896_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.44889e-35
NZ_CP029788.1\|WP_110630120.1\|5349534_5362152_+\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP029788.1\|WP_110630117.1\|5327552_5327822_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	4.06184e-07
NZ_CP029788.1\|WP_162655597.1\|5362148_5364659_+\|AMP-binding-protein	gnl\|CDD\|380463	cd19540, LCL_NRPS-like, LCL-type Condensation domain of nonribosomal peptide synthetases (NRPSs) and similar domains. LCL-type Condensation (C) domains catalyze peptide bond formation between two L-amino acids, ((L)C(L)). C-domains of NRPSs catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). In addition to the LCL-type, there are various subtypes of C-domains such as the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the epimerization (E) domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity. An HHxx[SAG]DGxSx(6)[ED] motif is characteristic of LCL-type C-domains.	0
NZ_CP029788.1\|WP_110630123.1\|5373695_5374970_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.79125e-41

>NZ_CP029788.1|WP_110637037.1|5324952_5325345_-|hypothetical-protein
MRRLPNPRLTGLGGGLFCAAVMIVLGFLVRLLFGASETVYGVLFLPVSALTALWVRRGDLLTAPVVVPIAFAAGLLTAADGGEGVGGWLMGLVTALATQAGWLYGGTIVAAVITLGRGLRAAHHRRRRNP
>NZ_CP029788.1|WP_110630114.1|5324152_5324896_+|ROK-family-protein
MQIFGVDIGGSGIKGAPVDLDKGDLAQERHKVLTPHPATPDGVADGVKQVVEHFGWTGPVGLTFPGVVTGGATVRTAANVDKSWVDTDARALFSERLGGLPVTVVNDADAAGVAEMHFGAGKDRRGTVILLTFGTGIGSAVFTDGVLVPNTELGHLELGGHDAEKRASSKAKEDHELSWEHWARRVQKYLAHVEMLFSPELFIIGGGVSRKSQKFLPHIEGIRAEIVPAQLQNNAGIVGAAMRAAEV
>NZ_CP029788.1|WP_162655595.1|5323094_5324102_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MTASPGRRVLLAAPRGYCAGVDRAVIAVEKALEQYGAPVYVRHEIVHNKYVVQTLEKKGAVFVERTEEVPPGNIVMFSAHGVAPTVHEEARQGRLATIDATCPLVTKVHKEAIRYANEDYDILLIGHEGHEEVIGTSGEAPDHIQLVDGPGDVEKVEVRDPSKVVWLSQTTLSVDETMETVDALKTKFPGLVSPPSDDICYATQNRQLAVKQMGAEADLVIVVGSRNSSNSKRLVEVAKLAGAREAYLVDFAKEIDEAWLEGVTTVGVTSGASVPEVLVEEVLAWLAERGFEDVEIVKAAEESITFSLPKELRRDLREEAAALVAERGGAGPAGA
>NZ_CP029788.1|WP_110630112.1|5321697_5322906_-|exodeoxyribonuclease-VII-large-subunit
MAVNTSADTPIPVGEVSRLIGGWIDRLGAVWVEGQITQLSRRPGAGVVFLTLRDPSYDISVSVTCYRQVFDAVADVVGEGARVVVHAKPEWYAPRGQLSLRAAEIRPVGVGELLARLEQLKKSLAAEGLFAPERKKPLPFLPQLIGLVCGRASAAERDVLENARHRWPHVRFEVRNVPVQGVHAVPQVVQAVKELDEIDEVDVIIVARGGGSVEDLLPFSDEQLVRAVAACRTPVVSAIGHEPDTPLLDYVADLRASTPTDAAKKVVPDVGEELERVRMLRGRARRSVEALVEREERGLAHALARPSIQDPHRMIDEREDQVAALVERSRRCLGHLLDRADSELTHTHARVVALSPAATLQRGYAVLQKADGHVVRAPGEVTAEEPLRARVAEGEFIVRVDV
>NZ_CP029788.1|WP_110630111.1|5321445_5321688_-|exodeoxyribonuclease-VII-small-subunit
MTSKVDEALGYEQARDELIEVVRRLEAGGTTLEESLALWERGEELARVCRRWLEGARARLDAALAEEEAGESPADGAGEG
>NZ_CP029788.1|WP_110630110.1|5320770_5321298_+|DUF4245-domain-containing-protein
MAGSNGKQKTVRDMVLSLGLIMIAALAVYLFIPHDDHAPDIKRVDYRVELLTARRAASYPVAAPEGLPQSWKPTSVRFDGADFDAWHLGYHAPDGEYVAIEQSTDKRARFIDEASQGAEATEVTQQIGGRTWIRYTGGRYDALVLKDTPGGSTTVVAGTASFDQLAKMAGALKMA
>NZ_CP029788.1|WP_110630109.1|5319609_5320644_-|class-II-fructose-bisphosphatase
MTEHHHLPSELDVPSEAPDRNLALELVRVTEAAAMAAGRWVGRGDKNGADGAAVRAMRTLVSTVSMNGVVVIGEGEKDEAPMLYNGERVGDGTGPEVDIAVDPIDGTTLTAKGMPNAIAVLAAAERGSMFDPSAVFYMDKLVTGPEAADFVDIDAPVAVNIRRIAKAKRSTPEDVTVVILDRPRHEGLIKEVREAGARIKLISDGDVAGSIYALREGTGVDLLLGIGGTPEGIISACAVKCLGGTIQGKLWPKDEEERQRAIDAGHDLDRVLTTDDLVSGENVFFVATGITDGELLRGVRYKSETALTESIVMRSKSGTVRRIDSEHRLSKLRAYSAIDFDRAK
>NZ_CP029788.1|WP_110630108.1|5319142_5319520_+|WhiB-family-transcriptional-regulator
MLQPPHSSLQVAAVPAQRVPARDRDQDAPWHTEAVCRRDEAGLFFAPSKEPTAARLSREEAAKRVCARCPVMVECREHALLQPEPYGVWGGLTAAERRVVLARRRRREMELKKAARTTDRIAAAG
>NZ_CP029788.1|WP_110630107.1|5318349_5319030_+|DUF1707-and-DUF2154-domain-containing-protein
MDLQKQTAPTPTAELRASDAERDRIADILRDALAEGRLTAEEHAERVEGVLAARTVGELEAFVRDLPAAHARRAPGAVPGRPAAGAVPADPDDNVVAVFSSATRRGRWRAGRRIHAYAVFGSVEIDLSEALFEYQQVVIKAVSVFGNIEIRVPENVSLHGTGGGVLGNFEVDALDSGDPDAPVVYVEGWAVLGNIEGRPRRGRIVADILDRVQRKVDKNLRKHLDR
>NZ_CP029788.1|WP_110630106.1|5316487_5318158_-|fumarate-hydratase
MPEFAYTDLLPQGEDTTPYRLVTSEGVSTVEGPDGRTFLKVEPEALRKLAAEAIHDIQHYLRPAHLAQLRRIIDDPEASSNDKFVALDLLKNANIAAAGVLPMCQDTGTAIVMGKRGQNVLTSGEDEKHLSHGIYDAYTKLNLRYSQMAPLTMWEEKNTGSNLPAQIELYATDGGAYKFLFMAKGGGSANKSFLYQETKAVLNEASMMKFLEEKIRSLGTAACPPYHLAIVVGGTSAEYALKTAKYASAHYLDNMPAEGSPLGHGFRDKELEEKVFELTQKIGIGAQFGGKYFCHDVRVVRLPRHGASCPVAIAVSCSADRQAVAKITAEGVFLEQLETDPARFLPDTTDEHLESDGDVVKIDLNQPMDTILAELTKYPVKTRLSLTGPLVVARDIAHAKIKERLDAGEEMPQYLKDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVEQFQAAGGSKVMLAKGNRSKQVTDACNAHGGFYLGSIGGPAARLAQDCIKKVEVLEYEELGMEAVWKIEVEDFPAFIVVDDKGNDFFQDPAPAPTFTSIPVRGPGLA
>NZ_CP029788.1|WP_110630115.1|5326123_5327212_+|redox-regulated-ATPase-YchF
MSLTIGIVGLPNVGKSTLFNALTKNDVLAANYPFATIEPNVGVVGVPDPRLTKLAEIFKSERTLPATVDFVDIAGIVRGASEGEGLGNKFLANIRESDAICQVIRAFKDENVVHVDGKVSPKDDIETINTELILADLQTIEKVLPRLQKESRIKKDVAPKVKAVEEAKEILEKGDTLFAHGIVQGSERAELLHDLHLLTTKPFLYVFNVDEDELTDESFKEEQRALVAPAEAIFLNAKLEADLAELDEEDALELLQSVGAEEPGLATLARVGFDTLGLQTYLTAGPKESRAWTIKKGATAPEAAGVIHTDFQKGFIKAEVISFDDLVEAGSVAEARAKGKARMEGKDYVMQDGDVVEFRFNV
>NZ_CP029788.1|WP_110630116.1|5327296_5327560_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSEYRTVFRPEAQAELRKIPRDMALRILAKLTELESDPLGFNTTALVSQPDRRRLRVGDYRVIYTIDNGELVVWAVHVGHRSTVYDS
>NZ_CP029788.1|WP_110630117.1|5327552_5327822_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MTEPLPIESIRDVRAHLAEVVERADRDDVPTVITRRGKQVAAVVSIEVLRKYQEWEEREINRIIDERMANRAPGIPIEDIMRETLARGE
>NZ_CP029788.1|WP_110630118.1|5327995_5328469_-|hypothetical-protein
MRRRLATLLAAAAGALAVASPASAAPADKPQVLSSWTQTSAESQNAWLSARADQGAWSAYGFDWSTDYCTTSPDNPFGFPFQTACARHDFGYRNYKAAGTFDTNKSRLDDAFYADLKRVCSAYSGLKKTSCDSTAWTYYQAVKAFGSSAAVDGARAA
>NZ_CP029788.1|WP_162655596.1|5328791_5349533_+|amino-acid-adenylation-domain-containing-protein
MALSEVRNDVRLPVTAAQLGVWVAQRLAPESALYQCAVHFDSGPLDIGVLRRSVTRAVAETEALRARFGDDGEVFQIVAGAVDAPVDLVDLRGEADPEAAARAWMDQDMATTPDLEAGPLFRHALLVLSDRRHFFYLRYHHIVLDGFGQTRYLDRLARIYTALLAGQEPAPAGARGLDVLLAEERAYLESPHHASDRDLLLGRLAGAEERQSLADGAAAAAPRALRLRTELPRELTRALTAVGHWPAVIAAATAVYHHRLLSVDDVVLGIPVAARRTPAALTTPSMLANDVPLRLTVGPDATFAELVHAARTELGALLRAQRFRREELHEASELTGTDGTVFATAVNAMSFDARVRFGEVLATARQLSNGPVADLAMATYGDPAEGGVLLEFAANPELYTEDELRAHQDRFLRLLGSLAESPEAPVGRAHLLAPAVAEELLHGVNDTAGDVPGALVELFEQQAAATPDAVALCAEETLTYAELDARANRLARLLSARGVGTERLVGVVLPRSANLVVTLLAVLKAGGAYLPIDPEHPADRRAMVLDDARPELLVTVSGGEVPGGVPALFLDEVDLSAGDTSPLGRVQDPRSTAYVIYTSGSTGRPKGVVLERSAMDNFLAAMARAVPVGPGDRLLAVTTVSFDIAVLEIFQPLLAGARVVLASRDEVLDPDALRAIVEREGITVMQATPSLWQPLVETRPEVFAGVRVLTGGEALPQSLAGPLAEHAARVTNMYGPTETTVWSMTAPVDGGPVSLGAPILNTRVYVLDTALRPVPPGHSGELYIAGDGVARGYRGRPGLTAERFVADPYGPGRLYRTGDLVRREHDGSFTFLSRLDHQVKVRGFRIELGDIEAALLAHPPVERAAVLMREDRPGDKRLVAYIVSPEGDSPLLRTHLAETLPEYMVPSAVVVLDALPLTPNGKLDRRALPAPVHVARTDGRAPRTPLEERLCALYAEVLGLDSVTVDDDFFTIGGTSLWATRVVVRAAREGISFAIRDLFRARTVARLAPLCAVGAPAGEEPVETALPDVLPPAELAALLAGAEVEEVLPLTPLQDGLVVHSLTTDEDRDVYSVHITLDLTGEVDAERLRGALDTVVSRHPVLRSSVAHEDVSRPVLVVRGRAAVPWRVHDLRGRADRLDTVLRAETAQPFDLASAPLLRATLLRLDEGWRLIVTCHHLVLDGWSVPILLGETLRAYAGGDLGPAPRPYRAHLGWLAAQDHERSAAAWGEALAGVRPTLLGAVQGPAREAVRLESALDAATTTRLEGTARELGVTVNSLVQAAWSVALREVTGQDDVVFGITVAGRPAEVPGVNEMAGLFVNTVPLRARPGSGRTLAELARSVQDDQADLLAHQYLPLVDVQRAAGVSGLFDTVVAFQNYPVDRAALDALAREGGLVAGDADVHDVNHYPLTLTAVPGERLTARLVCRPHLFDPAAARELLDRFTGTLSTLAAAPGTLVGALVPDREPSAAEDARDLAELRGFRFDTADVEAALTAHPDVVRAAAVVREDTPGERRLVGYVVPRRGATPDASALRDALAAGLPDYMVPSVFVTLDTLPPAPGGGVDRRALPVPVLAGAVSREPHTPLQELLCELYAEVLGLGTVGIDDDFFALGGDSILGFRLLSRARARGVSFGFRDMFERRTVAALAEVCSAYEPEAASGRITLPVSAEEAARLAAEPGVETVLPLSPNQQGLLFHHAFDDTGADPYTLQIVLDFTAPLDAGRLGAALDRVLLRHEALRASFRTTAEQRSVQLVHEAPSVPVREAEAADEAAFAALLDEDRATRFDLSRPPLVRAAAVRRAGGGGSLVLTMHHIVVDGWSLPIVARDLFAAYAELGTEPEAAALSGAVQSDSALPGAVPDEAGRARYRDHLAWLDGTDREASLRVWREALAEVTEPSRIATGQGDRVLEPVRQEHVLSEADTAGLAAVARRYGVTVNTLVQAAWAIVLRGLTGRDEALFGVTVAGRPAELPGAGELVGLFINTVPLSVRLDAGERLGDLAVRLGREQSALLDHHHVALGDIQRATGMGELFDTLLSFENYPLDPAEITARARAAGLDLAGARVRDGSHFAISVVVEPGERMRLRVRHQPQLVDEATAQAAGAELLATLRAFVTAPGLPLARLARGEETAPAQAAPAASSPVTLPGLFAAQAARTPDAPAVVAGGESLTYRQLDRRSNALAAELVARGAGPGRLVAVLLPRSVDLMVALLGVLKSGAAYVPVDPSYPAERIAVILQDSAPALAVTADPDLAPAGLATVRPTGAEADALGHTPRPEDAAYVIFTSGSTGRPKGVVVEHRALGAYLARAATAYPDAAGTSLAHTSVSFDLTVTCLYTPLVAGGRVHLAELPDAIGAARPTFLKGTPSHLRLLDTLPEEVSPSGTLVLGGEALRGEMLAGWRAAHPGATVVNAYGPTEATVNVMEFRIEPGEPLADGPVPIGRAFPYARVYLLDSGLRPVRPGARGELYLAGEGLARGYLGLPGQTSHRFVADPFGPAGSRMYRTGDLARLRRDGMIEYLGRVDDQVKVRGFRIELGEVEAAAEAVPGVRRAAAAVRGTTGEPRLVGYLVAPGGVDTAEVEARMRAVLPEYMVPAAFVVLDELPLTPNGKVDRAALPEPAVTAGTAGRTASGALEERLLGLFREVLGRADAGVEDDFFALGGDSIMSIQLVGRARAAGLKFSARHVFEHRTPAALAASLGGEPSRSPLEERLLGLFRQVLGRADAGVEDDFFALGGDSIMSIQLVGRARAAGLRFSARHVFEHRTPARLAAALGAQDGAVPTADAQHGPRSAPLLPLMHRLVTRGRFDQYNQSVTLTLPPTTRAHLAAALGAVVERHEALRMRVADATGFTVAPLAADAATAFADALLTRVAAPADATEDELTALAAEQTAAARDALDPAAGRMLRAVWIDAGDRRTGRLLLVVHHLAVDGVSWRIIVPDLAEAWAAVAGGGRPALAPVGTSFADWARAFTALPADDTPYWRELLTADDPLIGDRRLDPARDLRGDAGRLTLRVPADVTGAVLGTLPAAFHAGPDDVLLTALAAAVPLWRGDRAGLLVDVESHGRHEELVADADLSRTVGWFTVIHPVRLDTADPGAVLAGADAAGDALRAVKEQLRATPGQGIGYGLARHREQAAAAESAGLPDAQIGFNYLGRVRLAGGLAPGWDLAAVGADDAPDVPLSHVVEVTVAAHEGPDGPELVATWTWARALVSDADAARLADLWDSALRGLAAHGDRPGAGGRTPSDLLVHLSHEEIRELEADPDVADLLPLAPLQEGLLFHHQYGDGADDPYISQLRVELTGSLDVARLRAAAAEVQRRHPALRAAFRRTSQGTPVQVVLADPAVDFTTVELRDPAELDAVCAADRGRGFDITTPPLIRWTVASAGDRHTLVATAHHSVRDGWSMPIVMRELMAHYLGDALPQPRPHREHLAWLARQDRTAAEAAWGETLAGLDGGTLLATGPAPAGQEPGRLDLTVDGLDVQGAARRLGVTVNTLVQSAWLLLVARLTGRDDIVTGATVSGRPADLPGAADMVGLFVNTVPLRATLRADEHVGDFARRLQLEQARLVEHHHLGLVDIRRLAGHGELFDTSMVFENYPLDVDALAAVARRAGLEAGAVSHHSVTHYALAMEASPLPGGDGLRLRLHHRTDTLTAEQMGQIGELLPRLLRTVVTAPGTPVGRIPGYAPAALLALGRGPEDAADPRTWPELFLDQVRRTPDAPAVASGARTLTYRDLADRAGALARLLAEAGVGAEQRVGIVLPRSVDLVVALHAVALAGGAFVPVDPAHPAERIAQTLTDAAPVLVLTTSGTALPETGTRRLDVDALDLSGDGLVRPVRAEQAAYVIYTSGSTGRPKGVVVTHAGIPGLARAQKAGFDVDADSRVLQFASPSFDAYVSEVAVTLLAGACLVVAPREELLPGAPLVRTVAEHGVTHVTLPPAALRELRPGDLPTLRSLAVAGEQCPPQVAEVWSAGRRMVNAYGPTETTVCATMSAPLSGFGVPPIGTALHGLEVRVLDAHLQPVPVGVVGELYVSGAGLARGYLDRPGLSAERFVADPFGAPGTRMYRTGDQVAWREDGQLVYVGRADRQIKLRGFRIEPGEIEAAVVAAPEVAASAVVVREDRPGDRRVVAYAVPAPGATVAPEALRARLREVLPDHMVPAAVVVLDRIPVTVNGKLDQAALPAPRYDTTAGRTPGDPVEELLAGVFAEVLGVDRVGPDDSFFDLGGHSLLAMRLVARVSAVLGTELPVRAVFESPTVRELARIAAGGPRATALAPGALPRPERLPLSYAQQRQWFLDRFDGTNSAYHIPIALRLTGRLDEAALAAALDALVRRHESLRTLIAEDEEGPYQRIVGTTLWCEPAPVAREALDEALREAVARPFDLTADVPVRVHLFAVGPDEHVLLVVVHHIAGDGASVPVLARDLVAAYRAHLDGTPLAPAGEAPQYADFALWQRAALGAEDDPGSVLGRQLDHWKAALDALPEELALPADRPRPAAGPHRAGRHRLEIPADLHTELTRVARELKATPFMVVQAAVAALLSRLGAGTDIPLGSPVAGRTHASLSEVVGLFANTLVLRTDVSGDPSFAELVDRVRETDLAAFAHQDVPFERLVEALRPERSAARHPLFQVVVEWGDDGTRALDSLQDLPGLSVEPLQLTVDAAKFDLVWHLRPRHTAAHAPAGIAVDVEYSADLFDAATVASMGDRLVRLLGAALAEPARPVTDLDVLGADERDLLLGDWAYTPAEPTAPLGADDTIVRRFEAAAAAHPDRVAVTGEDERGRPVTLTYAELNARVNRLAALLRERGAAPERFVALALPRVTDLVTAVLAVLKSGAGYLPVDPAYPTERVALLLGDSRPVVTVGTRATVAALGGDATWLALDDEDVVADLAARDTADPEPAAGADHAAYVIYTSGSTGTPKGVVVTHRNVLRLFDATGHWFGFGADDVWTLFHSYAFDFSVWELWGPLLFGGRLVVVPHAVSREPGAFLELLRRERVTVLNQTPSAFHELIRADEAAGGADLALRYVVFGGEALDPARLLPWYERHADDSPVLVNMYGITETTVHVTHRALTADEVRAGVAGAIGVGIPDLGVHVLDERLRPVPAGVVGEMYVSGAGVARGYAHRPGLTAGRFVADPFGPPGTRMYRSGDLARRRPDGSLDYLGRADSQVKVRGFRIELGEIEAVLLAQDQVAQAAVVVREDTPGDQRLVGYVVTDGGTGRALAPALREAAAEALPAHMVPSAVVVLDRLPLTVNGKLDRKALPAPQAPARTAGRAPANPAEELLVDAFADVLGVDRVGVDDSFFDLGGHSLLAMRLVTRVRAALDADLGVRDLFESPTPAALARRAAGVEGTGRPALTALPRTGRVPLSYAQQRLWVLDRLGGGAGGDGAYNIPIALRLTGTVDADRLREALGDVVARHESLRTLVDDRGGEGAEAWLRVLPEARVELPVVRVGADDLDARIQAAASAGFDLTTELPLRARLFTVGPDEHVLLVVVHHIAGDGTSMPVLARDLATAYAARLDGAAPAWEPLPVQYADYAGWQRAFLGEPDGTDTGSEMGRQLRFWSEALDGLPEELTLPADRPRPAVGPHRAGRHTFEVPEELYERVGRVARELKATPFMVVQAALAALLSRLGAGTDIPLGSPVVSRSDEALADVVGFFVNTLVLRTDVSGDPSFAQLVDRVRQADLAAFAHQDVPFERLVEALRPERSAARHPLFQVALSLDSAGGTALAEAGRMPGLTVEPRPVAPSVAKFDLTFTLTERLGEGGRPVDWAGGVEYSADMFDADTVARLARRLVRLLDVLTDRPGARVSAHDVLVDGEREAILGSWLENTAPVAPASLPEAIARQVAERPDAPAVTFGGTTLSYAELDARANRFAHALLARGVAPEARVGVLMERSDTLAVALLGIVKAGCAYVPLAPANPDERLVHLLDQVQAPLLVVDEAGRERAEGLDIRAELVDAGADVSRLPATAPGVPVDPRNLAYLMFTSGSSGLPKGVAICHGDIVQLAADRCWDGVTDRVPLHSPHAWDASILEFWVPLVRGGEVLVVPPGDLDVTDLKALIADSGITSLFLTAGLFRVLGQEIPEAFAAIRQVATGGDVVSGPAVRRILEHAPGLRIVNAYGPTEVTVMALSHRVDAATLDPQAHSVPIGRSLDAMRHYVLDDALRPVPPGVTGELYAAGPGLARCYWNRPDLTSDRFVADPYGPPGTRMYRTGDLARWTADGLVEFAGRADEQVKLRGFRIELGEIESALAAAPGVTACAVLVREDRPGDKRLVAYTVAGPGYDRAELGAHLGRTLPDYMVPAAIVELTELPLTSIGKLDRRALPAPEFGSTGGRTAATTEEEILVRLFAQVLGLPEESVDADSAFFDLGGDSIMAIQLVSAARREGLTITGADVFTHRTVAELARAAAAAQAPGDSEPDEPVGDLPAWPMLHWLAERRVPVDRFNQTTVLHAPAELDLDRLHTLVGALLARHDSLRLKVAVDDPADAATWHVEVPAPDAVRAGDRVRRVDAATLTDDELADVVRQHGEAAVGRLDPGAGAMVEIVWFDRGTRPGLLLVAVNHLAIDGVSWRILLPDLFRAWADILAGRAPDLGSGGTSLRRWAQRNTESAVSPRTLAQLDHWTGTLRHGTPLGARPLDPAVDVLGAARRLRRTLPAGITGHLLTTAPAVVGAGVDDVLLAGLALAEARRRRDPDASVLIDVESHGRERDGASDLSRTTGWFTALYPVLLDTAGTDLDEAFAGGHAAGTVLKHVKELLRAVPSEGLGYGLLRHLNPETAAAFEGLPTAGIGFNYLGRFVAGETGDWAVAADAPRPDGEDPATPLAHAVEINAYVEESADGPRLGATWTYAPGVLTDDEAAALADGWFEALTALAEHAQRPDAGGLTPTDVGLIEITQSEIEQFEDELASDWEI
>NZ_CP029788.1|WP_110630120.1|5349534_5362152_+|amino-acid-adenylation-domain-containing-protein
MARSNRTVDDILPLSPLQSGLLFHSLFDVSDESTPDIYTVQSTFHLAGPLDAGRAREAADALLRRHASLRVAFRQRKDGEWVQIVAARYKLPWTEIDLSHLPAAEADAEAREATLADREQRFDTGRPPLIRFTLIRLGAESHRLVLTIHHTVLDGWSLPTLLKEYHALYLSGGDARGLPAVAPYRDYLAWLSRQDADASRAAWDAMLDGLTAPSLVAGTAEHTPQDPGRYEFGLTEEQTRALTARARSAGVTVNTVVQAAWALVLAGLTGRDDVVFGVTVNGRPAELPGIESMVGLFINTLPLRVRLRPGLTAGELLGTVHHAQAELIAHQYLGLSEVQHRTGLGPLFDTSVVFENFPFDSAPAVSADSDPLRVVGAESHSANHFPLSLVGMPQETLRFKLFHQRDLFDDTAAAAVADRFLALLDILVGEPGRPLGRIDVIGADETARALAAAAGPEGAASHGVRLPTLPELFTDQAAATPDAPAVRAGDEVLTYRELDARASHVARTLVARGVTPGRTVAVLLPRGIDLVVALLGVAKSGGAYVPLDPEHPAERIAAVLADADPVLALVEPGIDLPGTPTLAVTDEEAASFTAAPRPHDPAYLIFTSGSTGGPKGVVVEHGSVAAYLVRARAAYPDAAGLTLVHSSVTFDLTVTGLYTPLVSGGCAHLAELPEAVGGPRPTFLKGTPSHLELLDTLPAEVSPSGTLVLGGEALRGEALRTWRAAHPDATVINAYGPTEATVNCLEFRIEPGTELADGAVPIGRPFADTRAYVLDAALRPVAPGVAGELYISGVVLARGYLGRPGLTAERFVADPYGPPGARMYRTGDLARRLPDGTFVYAGRADDQIKLRGFRIEPGEIEAVAAAHADVTRAVVLAREDRPGDARLIAWVTPETVDTEALRAHLADALPAYMVPAAIVALPAMPLTPNGKIDRRALPASEETTTALPVQRARRDPREDLVRDLFAGVLGLASVGPDDDFFDLGGHSLLAIRLVSRLRAALGVELSVKHLFRSSTPAALVRSLGEAEEARPALVRTERPERLPLSYGQQRLWFLHRMEGPSPVYNLASALRLTGPLDHDALRAAYADVVARHESLRTVIAEDEQGAHQIVLDDVRPELTHVRCTEDELAELLAEHARHPFDLSADLPLKLFLYELAEDRHELLVLLHHVAGDGWSTPLLTRDLTRAYAARAEGAEPQWRELPVQYADFALWQHRLMGSEDDPDSRASRQLAFWRETLADLPEELALPTDRPRPAVASYRGDNVRITVPAALHRAVAQCARAADATVFMVVQAALAVTLSRLGAGDDIPLGSPVAGRLDEALDDLVGDFINTLVLRTDVSGDPTFAELLARVRETDLAAWSHQDLPFERLVEVLNPARSLARSPLFQTLLAFNNTGGPAGSGQGEARLGRLSVTARGGVGSGVAKFDLAFNLHERHADDGAADGMTGILEYAADLFDHSTAERLAERFVAVLARLVADPAQRVGAVDVLLDGERTAALVLPSTTARTAEDRWFLDRFEQHAARRPDAPAVTAGDVTLSYGEVNRRANALARLLTERGAAPERFVAVALPRTADLLVTLLAVQKSGAAYLPLDTNFPADRIHRMITDAAPAVLVTTAQLLPGLPDVAVPTVLADEADPAGYADHDLGVRAPATGAAYVLHTSGSTGVPKGVVVPRGALDNFLRAMADRCRVTADDRLLAVTTIGFDIAGLELYLPLACGAHVVVAGPDTVRDPEALRAAVTRHGITLMQATPTLWRAATGRDASFLHGVRVLVGGEALPADLAATLTAGARSVLNVYGPTETTVWSTAAEITDPAGIHLGDPIDNTGAYVLDDRLRPVTPGVPGELYLSGSGLARGYLRQPGRTAERFVADPYGAAGSLMYRTGDLVRRTPAGRLECVGRGDQQVKLRGFRIETGEIEAVLTAHADVRAAAVGVRPDASGEARLVAWVVTDLDVLALRGHVSAAVPEYMVPAAFVTLPELPLTANGKLDRKALPDPAETHDTAGRPPRSPQEEILCGLFAEILSRPRISIDDDFFAAGGHSLAAMRLVGRIRSVLDVDLPISVLFEAPTVAALAARLTGAGASRAPLTAGERPERLPASPAQQRLWFLNKFEGSGSATYNVPVVLRLSGALDEQSLAAALTDVVTRHETLRTVFAEDAEGPYQVVLDPRPVPTAQRPAAEEELPALLTEAARTGFDLAADLPLRAHLFALAPDEHALLLVMHHIAGDGGWSVPLLVKDLATAYAARRSGEEPGWQPLAVQYADYTLWQREVLGSADDPDSELGRQLAHWREALADLPEELTLPTDRPRPPTGTGQGADLRFHIPAELHAELESLAQKHRASLFMVVQAAVAVALSRLGAGEDIPLGTPSAGRVNEALDGLIGFFVNTLVLRTDLSGDPTFAEVLDRVRGTSLNAYAHQDVPFERLVEALNPDRSLGRHPLFQTMVTWNNAAQDATGRLAEDLPGLRMRVGEVDARVATFDLLFAFSDLRTERGAPDGLAVRLEYATDLYDPATAELFVSTLTTVLASVAADAERPVHRIDVLPPAARARLLGTADGPEPRPYRPLARLLAAQAERTPDTVAVTDEHGSLTYRELHERARALAVELLGLGLGPEDRVAVALPRGTDLAVALVATLTAGAAYVPVDPDLPSERVALILADTAPGALVTTARTAARLPAVGVPQVLVEVPWPPADATQAFPEALPGHPAYVIYTSGSTGRPKGIVMPHGALANLLDWHERAVPAPPGTVVAQFTAVGFDVSVQEILSALLTGKTLAVVPEDTRRDPRELAHWLADHEVAELYAPNLVIDGVLEAARECGADLSGLRHLVQAGEALTLREPVRAHHAGAPTRLHNHYGPAETHVVTAWTLPADPAHWPDTPPVGRPVDGVGVRLLDAGLLPVPPGVVGELHLSGVALARGYLGRPDLTAERFVADPYGPPGSRMYRTGDLARTTPDGDLVYVGRADHQVKIRGFRVEPGEIEAALTAHEDVARGAVVVREDTPGDKRLVAYVVPRQGGSPSASALRSHLAGLLPSHMVPAAYVLLDALPLTRTGKLDRAALPAPAPDLAAVRAPRTAREEALCGLFAEVLGRPVVGVDQDFFELGGHSLLATRLVARIRTVLGVELAVRGLFEQPTPGGLAALLDEADGARPAVTRRERPERIPLSPAQRRLWFLHRLEGPGATWNMPTALRLTGPLDEEALGAALADVVTRHESLRTVFAEESGSGHQVIRTPEETLAALGTLRAADVAPDRLARELSAAAARPFDLAAEPPLRATLLRTGPQEHVLLLVVHHIATDGWSAPVLARDLTEAYTARHAGQAPSWAELPVQYADYTLWQRDVLGAEDDPDSVAARQLAYWKRALAGIPEELALPADRPRPAVASHRGDTVPFHLPADLHAGLARLAGENRASLFMVVQAAWATLLSRLGAGEDIPVGTPIAGRTDEALDDLVGFFVNTLVLRADLSGDPSFTQLVDRVRETSLGAYAHQDVPFERLVEVLNPARSLARHPLFQTMLMWNNNDDRTAAGAADGFAGLTAEPLPLGTGVAKYDLTLALKEAYAADGGAAGLHGHLEFATDLFDRSTAESFVERFTRVLRTVVERPGIPVADVDVMAPGEREKVLGEGNDSDREVPDATLTRLFADRVAISPEACAVVFGDLALSYRELNARANQLAHWLAERGAGPERLVAVALPRSPELLVALLAVLKTGAGYVPVDPDFPEERIAYILRDADPVLTLTGELLAGTDLSAYGFDDPVVRGGSARNTAYVIYTSGSTGRPKGVTVTQAALVNFLTAMQDRFALTEYDRLVAVTTVGFDIAGLELFLPLLHGAQVVLAPREVVRDPAALASLVDDAGATLMQATPSLWQALAEAGGVPAGLRVLVGGEALPAPLARTLAGGGRTVTNLYGPTETTVWSTAADVTGSGGVTIGGPIANTRLYVLDGRLRPVPAGVAGELYIAGAGLARGYHRRAGLTSERFVADPYGPAGTRMYRTGDLVRRTASGDLEYLGRTDFQVKVRGFRIEPGEIESAVLGHPDVVRAAVVVREDSPGDKRVVAYVVHGPDGSPDGDVLRKHAAVSLPDYMVPSAFVVLDELPLTPNGKLDRAALPAPALGALGEGRPPRTEQEEILCGLFAEVLGVERVSIDDDFFALGGHSLLANRLAARVRSALGKEMSIRVFFANATVAALAESLATATATTTRPALRRRTGTKENS
>NZ_CP029788.1|WP_162655597.1|5362148_5364659_+|AMP-binding-protein
MTTLSFSQRRLWFLNQLDGPSAIYNIPTALRLSGTLDRDALTAALADVITRHETLRTVLADGPEGPRQVVLDAGDDAAAPVLTVAGADEAGLDAALQEAARYTFDLLGETPIRCTLFELAPDDHVLLVLLHHVAGDGWSVPVLVRDLLGAYAARQAGRAPDWPELPVQYSDFTVWQQELLGSEDDPDSVISRQLSYWRDTLAGLPEELGLPTDRPRPATATHRGDTLPLAVPADVHARLVELARENRASLFMVVQAALAALLSKLSGSTDVPIGTPIAGRTDEALDDLVGFFVNTLVLRADLSGTPTFRELLTRVRDADLAAYEHQDVPFERLVEVLNPPRAMARHPLFQTLLTWNDNDQRQARTAAAELPGLTVRGHNAETRTARFDLSFTVEERPTRTGAPEGLSGALNYSTDLFDRATAERVAERFTRVLAAVAARPDAPVARLDLLTGDERHEVLERANATARDVPSATVPELFAARAAAAPDAPALSFGAETVSYGELNARANRLAHWLVERGARPESLVAVALPRSVDLVVALLAVLKSGAGYVPVDPEFPQDRIAYILQDAAPVLSLTADVLAAADLTGCPAEDPQVAGARGHHRVRHLHLGLDGPPQGRRDPARAAGELPDRHAGPVRAHRRGPPRGRHDGRLRHRGPGAVPAAAARRPGGARTPRGGPRPGRAHHARTGVGRHAHAGHPEPVARDGRSRGSARGTARPGRRRGTARSPRAHARRGRAAGHEPVRPDRDHHLVHGRRHHRRRDHRRSDRQHPVVCAGRGSAAGAGRCGGRAVHRRRRSGPRLPPPPAAHLRAVRRRPLRPGRHADVPHGRPGAPYGLG
>NZ_CP029788.1|WP_110630122.1|5363793_5373699_+|amino-acid-adenylation-domain-containing-protein
MCPWTPSSRRTGSRTSSRTPHPSCRSPRTSSRRPTSPAAPPRIRRSRGLGDTTAYVIYTSGSTGRPKGVAIPHAPLVNFLTAMQDRFALTAGDRLAAVTTVGFDIAGLELFLPLLHGAQVVLAPREVVRDPAALITLVRESGATLMQATPSLWHAMAEAGGVPEGLRVLVGGEALPAALARTLAEGGRPVTNLYGPTETTIWSTAADITGDVTIGGPIANTRLYVLDAGLRPVPAGVAGELYIAGAGLARGYHRRPQLTSERFVADPYGPAGTRMYRTGDLVRRTASGDLEYLGRTDFQVKVRGFRIEPGEIETVIADHPDLARAAVVVREDSPGDKRIVAYVVPVGGSGGPHHALLRKYAAASLPEYMVPSAFVVLDELPLTPNGKLDRAALPAPSYGLDQAGRAPRTPQEEILCGLFAEVLGVPRVTIDEDFFSRGGHSLLALRLMTRVRATLGVDLPVRQLFETPTVAGLAALLGSGGTARPALGARPRPERVPVSFAQRRLWFLNRLEGPSAAHNIPTTLRLSGSLDREALAAALADVVTRHETLRTVFAEDEQGPHQVVLSPEEARPALRVTRTDEAGLAEELRRAARRGFDLQAEPPLRAHLFELDQDEHLLMLLVHHIASDGGWSTPVLVRDLTTAYAARCAGEAPAWTPLPVQYADYTLWQHEVLGSEDDPESLVSRQVAHWSETLRDLPEELPLPTDRPRPAESSYRGATVPVTIPAELHRRLEHLARENRASLFMVVQAGLAALLAKLSGTTDIPLGTPIAGRTDEALEDLVGFFVNTLVLRTDVSGDPTFTDLVVRARGTDLAAYAHQDVPFERLVEVLNPPRARGRHPLFQTMLAFNNVDQKAALGEGRLPGLTVSGDKVGTGVAQFDLLLAVADGRADDGTPAGITGHLEYSEDLFDRSTAETLVRRLTLLLDALAEQPDLPLSRVGVLEDDERARILGSWLDTAAEVPHATLPALFTAQAARTPDAPAVRHGEHTLSYAELDARSSRLARLLVAHGAGPERFVGIALPRTELTLVAVLGVLKSGAAYVPVDPGYPADRQAHLLRDAAPALVLTVRDVAGGLPAEGAELLVLDDPATEAALAATSADEVTDAERRAPLLPSHAAYAIYTSGSTGLPKGVVVPHENVADLAAWALAEFGAEGMAHVVASTSLNFDVSVFEMFGPLLSGGSVEVMRDVLELGDPAHAGRPVSLISGVPSAVAQLVAEGGPLVSAREVVLAGEAVSARDANDVVRAVGAERFANIYGPTEATVYAAAWYSREEITRVPPIGAPLRNTRLYVLDAALQPVPVGVPGELYIAGPGLARGYHRRAGLTAERFVADPHGTAGTRMYRTGDLVRWTADGNLDYLGRTDFQVKVRGFRIELGEIEAVVLGHEDVARTAVLVREDRPGDKRLVAYVVPAAGRDVDRARLRAHVAAALPDHMVPSAFVALDALPLNPNGKLDRAALPAPEYGPAQTGRAPRTPQEAILCGLFADVLGVPRVFIDDDFFALGGHSLLATRLAGRIRATLGEELTIRQFFETPTVAGLAAALGAGGPARPPLRAGARAARVPLSSAQQRLWFLGRFEGRSHTYNVPTALRLAGAVDREALAAALADLALRHETLRTVFAEDAEGSYQTVLAPEDARPVLAVRETTEEQLTAHLEQEARYAFDIGAEPPLRATLFTVGPDEHVLLVLVHHIATDGWSMPLLVRDLTTAYAARCRGAEPGWQPLPVQYADYTLWQRDLLGSEDDPASLAARQLAHWRETLSGLPEELDLPTDRPRPAVSSYRGDLLDVEIPAAVHARLGALARDNNASLFMVVQAALAALLSKLSGSTDVPIGTPIAGRTDEALENLVGFFANTLVLRTEVAPDEPFTALVAKVRETDLTAYAHQDVPFERLVDVLNPVRSMARHPLFQTMLTFDNVAARDTADPAHAGPMPDVAASGQHVGTGVARFDLMFRLGERHTADGTPGGIAGVLEYAADLFDRDTARRLADRLVAVLTAAADRPDAPVGALDTLPESDRGRLLVDWNDTARELPSEHLPALFRAQAARTPHAAALDFEGRTLDYRELDLRSDRLAHALAARGVGAEDLVAVALPRTDAMVVALLAVLKAGAAYVPIDPEYPADRVAYMLDDAAPALLLTDRDTAAGLPAQTTVPRLVLDDTRTADELAAVTETGLDRVRRIPAPHPEHPAYVIYTSGSTGRPKGVVVGHENLLNLLNAMQGQLRLTAGDRLLAVTTIGFDISNLELWTPLAHGARLVLAARETVKDPVALARLVEESGATVLQATPTAWQGLVATRPDALRGLVKLVGGEALPGPLGRALHDLGGSLTNVYGPTETTIWSTSALLDATTCERPPIGRPLDNTRVYVLDAGLRPVAPGEAGELYIAGTGVARGYLNRPGLTSERFTADPFGPAGSRMYRTGDLVRWGAEGDLEYIGRTDHQVKVRGFRIELGEIEAALTTQEEIAQAVVVAREDTPGDKRLVAYTVPDRGDGSRDTEAEEHQVREWEEAYDALYGEPGSDTFGEDFGIWRSTYTGDPIPLEEMREWRAATVERILAGRPRRVLEIGAGTGLILAHVAPHCESYWGTDLSASVIERLGAQVAGRPELADRVTLTVQPAHDTDGLPRGAFDTVVLNSVVQYFPSADYLAEVLGKVRELLAPGGTVFVGDIRNLRTLRALRGAVALTGQDTPAEGAGRDALRAGVERAVAREKELLLAPEWFTGLPGVSGVDLRVRRGVHHNELTRHRYDVVLRTAPADEAADTADAPVLPWAGAEHLAAELAAGRPALRVTGIPNLRLTAEVTGVRALFDEDAPPADAVDPEDLYALAERTGHRVAVTWSATDAEDGALEALFVRGDGPVDLALAGSYRPAPGPDARPRANDPASRRDDTGLGPVLRDRLKETLPAHMVPAAVVVLDALPLTPNGKVDRAALPVPDFGTHGEGRAPATPREELMCALFAEVLGLARFGLDDNFFESGGHSLLATRLVGRVGAVFGVEVPLRRLFQAPTPAALLRELEPEGAHDGHGVLVPLRASGSGTPLFCVHPAAGLSWVYLGLLAHLGPQYPLYGLQARGTDGTGGLPASIGEMAADYADQITATAPEGPYRLLGWSVGGTVAHAVAAELERRGERVELLAVLDAYPVADAAGGEPPSEATIIAHNLRAIGFDFHESELTPETFPIERYRAFLARENKVMARFEEHEILAMKDVYVNNTRLMWSHTPPRFGGDVLFVTAERDRGALARERGHQAWAPYVGGEIVNHDVDSDHEGLMTRPGAIAHVGRVLAGRLAVLDEAAAGARRTGVDAPGRLSA
>NZ_CP029788.1|WP_110630123.1|5373695_5374970_+|MFS-transporter
MTAPAETAVAAPPPLRRNRDFLLLWTGNWLQFFGSRMSTVCYPLLALQISGGSAEAVGLASAAAVLPQAVVQLPAGVLVDRWDRRAVMRWCAAGRFLALAAVGTALALGVLGMELLLGLIAVEVSLAIVGSLAERAAVRTVVPGEQLPAALTQNEARGRIAGLLGGPAGTVLYTWTRWSPFVAATLGALIAAVNLRFIRADLSTQSPHERRPLHRDLADALRWLCRQRALRAMLPVVTVATALLQVVMQGLVVILVKEQGLPEATLGLVLGISGCGGLLGALTGRWFMARLPLSVLLIGGLTLWAALMNAMAWATGPVQLGVLFALMNIIGAVFGVATAVYQVTVTPQELQGRVAALSGLVVALGTTGGAYCAGKLLQAYRGLLSLLVAAGLMAVTAAVAALVPAVRKARIPDAAARPGTRAPS
>NZ_CP029788.1|WP_110630124.1|5375036_5376077_+|LLM-class-flavin-dependent-oxidoreductase
MDLSLFYFAHDSTAPGQAGRYELLIEGAKLADRSGLAAVWTPERHFDPFGGAYPNPAVLGAAVAMCTRRIGIRAGSVVAPLHHPARIAEEWSVVDNLSGGRAGIAFASGWNTVDFALRPENHADRRTLVRDIAEDVRRLWRGEALATTDGLGRPVDIRAYPPAVQSELPVWLTSAGGVDTFRAAARMKAGILTHLLGQSLDEVAAKIAEYRRVAAEEHDGWSGHVVLMLHTLLGDDLDQVREQVREPFTNYLKSSANLTAKSFTGKDMDLSQLNADDMDYLAARAFDRYFETGGLFGSVERAAELLPRVAALGVDEIGCLVDFGVDSRAVLDGIDKLGKLNEIISR

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Crispr_ID: NZ_CP029788_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_9

6122289-6122359

Orphan

Consensus_repeat	Method
CCGTACCCGCCGGGCTGCGGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_9

>merge|NZ_CP029788|9|6122289-6122359|CRISPRCasFinder
CCGTACCCGCCGGGCTGCGGCTGGCCGGGCGTGCCGGTGGGCGGGAACCCGTAACCGCCGGGCTGCGGCTG

>NZ_CP029788|9|9|6122289-6122359|CRISPRCasFinder
CCGTACCCGCCGGGCTGCGGCTG	GCCGGGCGTGCCGGTGGGCGGGAAC
CCGTAACCGCCGGGCTGCGGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110631354.1\|6109234_6110293_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP029788.1\|WP_110631386.1\|6129597_6130845_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110631391.1\|6132470_6134777_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110631368.1\|6114841_6115747_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP029788.1\|WP_110631376.1\|6125201_6126584_-\|type-VII-secretion-protein-EccE	unknown	unknown	gnl\|CDD\|274857
NZ_CP029788.1\|WP_110631363.1\|6114062_6114356_+\|DUF503-domain-containing-protein	unknown	unknown	gnl\|CDD\|377364
NZ_CP029788.1\|WP_110631401.1\|6136265_6136565_+\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|274862
NZ_CP029788.1\|WP_110631351.1\|6108725_6109232_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP029788.1\|WP_110631379.1\|6126790_6128326_+\|type-VII-secretion-protein-EccB	unknown	unknown	gnl\|CDD\|368288
NZ_CP029788.1\|WP_110631371.1\|6116015_6119612_+\|serine-protease	unknown	unknown	gnl\|CDD\|379142
NZ_CP029788.1\|WP_110631398.1\|6135865_6136213_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110631395.1\|6134789_6135263_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110631360.1\|6110843_6113909_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP029788.1\|WP_110631366.1\|6114392_6114845_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP029788.1\|WP_110631389.1\|6131928_6132474_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110637154.1\|6124449_6125196_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110631348.1\|6107829_6108474_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237871
NZ_CP029788.1\|WP_110631382.1\|6128366_6129596_+\|type-VII-secretion-associated-serine-protease-mycosin	unknown	unknown	gnl\|CDD\|274856
NZ_CP029788.1\|WP_110631373.1\|6119743_6120703_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP029788.1\|WP_110631358.1\|6110395_6110692_+\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|225350

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110631354.1\|6109234_6110293_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP029788.1\|WP_110631376.1\|6125201_6126584_-\|type-VII-secretion-protein-EccE	gnl\|CDD\|274857	TIGR03923, T7SS_EccE, type VII secretion protein EccE. This model represents the transmembrane protein EccB of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccE1, EccE2, etc. This model represents a conserved core region, and many members have 200 or more additional C-terminal residues. [Protein fate, Protein and peptide secretion and trafficking].	1.39977e-47
NZ_CP029788.1\|WP_110631363.1\|6114062_6114356_+\|DUF503-domain-containing-protein	gnl\|CDD\|377364	pfam04456, DUF503, Protein of unknown function (DUF503). Family of hypothetical bacterial proteins.	5.33209e-35
NZ_CP029788.1\|WP_110631401.1\|6136265_6136565_+\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	2.2694e-14
NZ_CP029788.1\|WP_110631351.1\|6108725_6109232_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	5.75457e-46
NZ_CP029788.1\|WP_110631379.1\|6126790_6128326_+\|type-VII-secretion-protein-EccB	gnl\|CDD\|368288	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B. EccB is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	1.22994e-63
NZ_CP029788.1\|WP_110631371.1\|6116015_6119612_+\|serine-protease	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	2.6781e-06
NZ_CP029788.1\|WP_110631360.1\|6110843_6113909_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP029788.1\|WP_110631366.1\|6114392_6114845_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	7.09398e-48
NZ_CP029788.1\|WP_110631368.1\|6114841_6115747_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	8.7705e-161
NZ_CP029788.1\|WP_110631348.1\|6107829_6108474_-\|hypothetical-protein	gnl\|CDD\|237871	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional.	0.000344581
NZ_CP029788.1\|WP_110631382.1\|6128366_6129596_+\|type-VII-secretion-associated-serine-protease-mycosin	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	5.49454e-98
NZ_CP029788.1\|WP_110631373.1\|6119743_6120703_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	4.12176e-151
NZ_CP029788.1\|WP_110631358.1\|6110395_6110692_+\|YlxR-family-protein	gnl\|CDD\|225350	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription].	7.94138e-25

>NZ_CP029788.1|WP_110631373.1|6119743_6120703_+|bifunctional-riboflavin-kinase/FAD-synthetase
MQRWRGLEDIPQDWGRSVVTIGSYDGVHRGHQLIIRHAVDRARQLGVPAVVVTFDPHPSEVVRPGSHPPLLAPHHRRCELMAELGVDAVLILPFTAEFSKLSPADFVVKVLVDKLHAKAVVEGPNFRFGHKAAGNVEFLTEQGKVYDFEVEVVDLYLTGEAGGGEPFSSTLTRRLVAEGDVAGAAEILGRPHRVEGVVVRGAQRGRELGFPTANVETLPHTAIPADGVYAGWLHAAGEAMPAAISVGTNPQFDGTERTVEAYAIDRVGLDLYGLHVAVDFLAFVRGQARFDTLDALLEQMAEDVKRCRELVAEAEAEGR
>NZ_CP029788.1|WP_110631371.1|6116015_6119612_+|serine-protease
MAGRGPRDDGQTVDGQTVDGTRLPDALLVHVTDLAGRPRGVGFLADHLGTLVTAHEAVDGLPRLVLRTADGRDRAVTADAVTPLPHRGLALIRTEGLGLEPLPLTVRERVDAGIYVRVPAGCWREARVLGTTGATYTATDRRHRLDDALELAIGTAGRDALRLGGGAAGGPVLDAATGAVVGVVATALTAGHAAAGFAVPLRPADGGPLAELLARNAATVAAYGADLNLAGILELTATSVGQDGPPAGGGTDVEPVERDAVAREFAAFDAGDAAVLALVGPPGSGRTTELAALAARRGRDPQPAPTLWLRGADLRDDDTGIADAARRALTRAARIVAASRGADVAWPGDLAEAGGRPAGAADRGAGAVAPAVHGSHPADPCHPPAPGPQHRQTADTGTRDTPDGFDPGRPARLARAAGRPLLLLLDGPEEMPPVLAHRLGEWTAGTAEWLRQTGARLVVACRDEYWEGAGARFPRELLHAGLDGEGDDTLPPHVRLGGLGEQEARLARQRYGIPEGALAASDARHPLALRLFAEVRAALPEAPRVRADRHDVFAAHLDLLCLRVAVRLAAGNGLRGTAVRRLAAKVAGQVHEAARRSLGPGQGELDREAFEAVFPWGPAPDRLGGGTGWASAVLTEGLLVPAGGGYRFAHEELADWLQGMHLDLDEALRALVHRRPHEAHPLPVPHHRIGPVVQALLLIARQHGTRRLTLRLDELTETLDADPDSWWAARLLTEVLSRVPDATPYLGVLRDLADRIAGRTLPPGRFGPAFWTGLRLRAADRFDLLRRLVLADTAPQDGGAPRYLDSTARLLATDPAAVQPYLLAWFDDERPLPATPHATVATAAQALLHTHRHRALDDLTELLVERAHPRAGELLTVLAEDEPAALCRAVDRWARDERPDRRAAAVTYGLRAAPHVRTEADRELLRYAALALLARPADTDLHGGALALLVRDPATRARHLPQALRRFAAGDPQLPPDALLTALATHADAVLDAFRTRLAGPAAGAALRALAEVTEPGPARRIAELVREAAALRPDAAEDVAAYVDTRLDQGPGARADLLPLVTGLLDGGPERVRAALAAVLAAPGAPASGPLRRELRDLLLAHEQDPGVLAALLHAAVYSTSGDELRDLLHRTGLLLARTPEGAARFDHGLVDLARHVPGFAACVAGWLAETPGEWAALVGPSARRTIENLAGVRVPA
>NZ_CP029788.1|WP_110631368.1|6114841_6115747_+|tRNA-pseudouridine(55)-synthase-TruB
MSSRPTPPDGLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTEKEYLGTVRLGQNTLTDDAEGEITSSTDASKVTREAIDTGIAKLTGDIMQVPSKVSAIKINGVRSYKRAREGEEFDIPARPVRVSSFAVHDVRDAVAEDGTPVLDLVVSVVCSSGTYIRALARDLGADLGVGGHLTALRRTRVGPYKLDAAKTLDQLQQELTIMPIAEAAGAAFRRWEVDARRARLLLNGVRLDMPEEYADAGPVAVFGPENRLLALVEAHKGKAKSLAVFG
>NZ_CP029788.1|WP_110631366.1|6114392_6114845_+|30S-ribosome-binding-factor-RbfA
MADNARAKRLADLIREVVAQKLQRGIKDPRLGSHVTITDTRVTGDLREATVFYTVYGDDEERAAAAAGLESAKGVLRSAVGAAAGVKFTPTLTFVADALPDTARTIEELLDKARASDEKVREVSAGATYAGEADPYRKPDEDEDEDDSAE
>NZ_CP029788.1|WP_110631363.1|6114062_6114356_+|DUF503-domain-containing-protein
MYVGTLSFDLLLGDVRSLKEKRSVVRPIVAELQRKYAVSAAEVDHLDLHRRAGIGLAMVSGDAGHLTDVLDRCERLVAGRPEVELLSVRRRFHGDDD
>NZ_CP029788.1|WP_110631360.1|6110843_6113909_+|translation-initiation-factor-IF-2
MAKVRVYELAKEFGVESKVVMAKLQELGEFVRSASSTIEAPVVRKLTDAFQGGGNGKSAGKPAPRKASPKPAPAPSPAQAARPAAPKPPAAPKPAAAQQPAAPSAPAPAPGPRPVPGPKPAPRPAPAAPEFTAPPSAPAPAAQNAPKPGGPRPGAPKPGSRPAAPGQGQQGERGQRPAAAQGGARPGGAAPRPGARPAGPRPGNNPFTSGGNAGMARPQAPRPQGAPRPGGPGAPGGPRPQAPGAQGGGPRPQAPGGARPTPGSMPRPQGAGPGGPRPGGPRPNPGMMPQRPAAGPRPGGGPGGRGPGGAGRPGGGGGRPGGGGFAGRPGGGGGGGFAGRPGGPGGGGGGGFAGRPGGPGGGGGRPGFGGRPGGPGGRGGTQGAFGRPGGPARRGRKSKRQRRQEYEAMQAPSVGGVMLPRGNGETIRLSRGASLTDFAEKINANPASLVAVMMNLGEMVTATQSVSDETLQLLADEMNYTVQIVSPEEEDRELLESFDIEFGEDEGDEEDLVVRPPVVTVMGHVDHGKTRLLDAIRKTNVIAGEAGGITQHIGAYQVSTEVNDEERKITFIDTPGHEAFTAMRARGAKSTDIAILVVAANDGVMPQTVEALNHAKAADVPIVVAVNKIDVEGADPTKVRGQLTEYGLVAEEYGGDTMFVDISAKQGLHIDSLLEAVILTADASLDLRANPNQDAQGISIESRLDRGRGAVATVLVQRGTLRVGDTMVVGDAYGRVRAMLDDNGNNVAEAGPSTPVQVLGLTNVPGAGDNFLVVEEDRTARQIAEKRAARERNAAFAKRTRRVSLEDLDKVLKAGEVQQLNLIIKGDASGSVEALESSLLQLDVGEEVDIRVLHRGVGAVTESDIDLAMGSDAIVIGFNVRAAGRAAQMAEREGVDVRYYSVIYQAIEEIEAALKGMLKPEYEEVELGTAEIREVFRSSKLGNIAGVLIRSGEVRRNTKARLIRDGKVIAENLNIEGLRRFKDDVTEIREGYEGGINLGNFNDIKVDDVIATYEMREKPRA
>NZ_CP029788.1|WP_110631358.1|6110395_6110692_+|YlxR-family-protein
MSGRTRARACPERTCVGCRERAAKTDLLRIVAIKGECVPDPRGTLPGRGAYLHPAQVCLDQAVRRRAFTRALRVPGALDTKALRQYVERTTVAEQATR
>NZ_CP029788.1|WP_110631354.1|6109234_6110293_+|transcription-termination/antitermination-protein-NusA
MDIDMSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAKEDPEDLEEGQEPREFDDTPSGFGRIAATTAKQVILQRLRDAEDDATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGLNAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMATRSARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQTQPQSGQHGGQRTGEQAGQRTGQRGGE
>NZ_CP029788.1|WP_110631351.1|6108725_6109232_+|ribosome-maturation-factor-RimP
MSTTQSERLRDLLEPLVTSQGLDLEEIAVDSVGRKRVLRVVVDSDTGADLDQIADVSRALSAKLDETDAMGEGEYTLEVGTPGAERLLTEHRHYVRATGRLVKFQLSEGGDLVARIIEVDDEGLDLEVPGVKGRKATARRLAFGEIEKARVQVEFSRKDKHEEEAEEA
>NZ_CP029788.1|WP_110631348.1|6107829_6108474_-|hypothetical-protein
MPFPPPPRIPSGPRRRTLLASAAGAVLLAGCSDAAEDSGGSTGGSPSLSERTRARAALDSRGLVERYDAVLAARPALAGRLAPLRAEVVRHVEAFGGRVPRPAGSVGSGGASLAAGSAGPSASPAGSPAGSPAGSPAGSPAGSPAGSPVASPTASASAPGDDKSALVSLAAAEKELADRRTTALVDVDGELARLLASVAAAGAVHAYLLTEAAK
>NZ_CP029788.1|WP_110637154.1|6124449_6125196_-|hypothetical-protein
MTTDTSTAPEPSFGERLRTGFGLLGPRHPRHTLTVEQADTLTLPIGDDGVVVGVNTEGQPAVLGVNRPTPYDMVLIGGLWTAQVLALRAAATGARVAVETGRAQAWMPMVHAMGGGQNGLAVYDVGRVPPQGASAGTPVLVVRDCGMRPPRGRVASAPWQSVLTLLPYLSPVAPRLMRQARLVGVQRVSPDEAAEIGRVLALPRPEIDSLPSLQDGVTLWCTDRDRQYVMTQATDAEVGLLGVARRMD
>NZ_CP029788.1|WP_110631376.1|6125201_6126584_-|type-VII-secretion-protein-EccE
MASATRTRSRSQSGSRSAGQRRSRGRGAASPAPQGTPPQASAATAHRGPVTPHLKSRSGRAGSFAVQRLVLLETAAALVVCGWIAGTYVLIPAAVVAALLVVLAVVRRRGRSLPEWLGTLLALRARVRRAASTPVPQGTDSGLAPAVECDPALRTYSYSRGDDRDQRPVGMVGDGGFLTAVLQVESDAGALRAERGRRPLPVALVRDVLEVDGIRLESAQIVVHTQPAPALHLPQQSVVVSNYAPLQAQTGSPAVRITWIALKLDPELCPEAVAARGGGLTGAQKCLARAAEHLASRLTGAGFRANILNEEELTAAIATSACANPMVTAQAAQAGRGEAPQRRTEESSRSWRCDNRRHTTYWVRRWPQLGGDGSSLAQLVAQLTTVPALATTFSLTLAKGGRQDVTVTGHLRITGRSNQELTNARRDLERAARAAKTGLARLDREQLPGVLATLPLGGAR
>NZ_CP029788.1|WP_110631379.1|6126790_6128326_+|type-VII-secretion-protein-EccB
MASRRDELNAYTFAKRRTLASFLQPSPSGSEEGAPKPLSALVPGLVVGVVVLAVFGAIGMFSPTAPKGWDTPGEHVIVASKSTTRYVVLKTGKQTQLHPVLNMASAKLLLDPSKNSVITVDEKVLDSGKPPHGATIGIPYAPDRLPGDSEAGSAKRWAVCERPGDGGRAIQKAAFVFAKKEWSRTEGADKLGGGDLMYVVGPDGKTQYVVDAKGTKYQLADPEDKELLKALDTQGRAPQRVSKEWLDTLHTGDPVAIPALSAADGTPGQKANASTALGEYDKVGEVIKAYDGQVMQYYVVLRGKVARISEFTATLLLNSGDLVAVGQAGEAQQVSPGAVADSTSFDGDKNWPSYRPRTVNNGASATSGRNTVCNVLRSVNAADGRTTLSTWVGTAFPAQLPTGSSSAYVTPGSGQLYRQFKGTETKAGGVFLVTDTGLRYALQSNSDSATDDKGIGTSAQQKKQELAEARIAQTRLGYEKVTPVPVPAEWSTFLPTGPRLSEAAARQPQGS
>NZ_CP029788.1|WP_110631382.1|6128366_6129596_+|type-VII-secretion-associated-serine-protease-mycosin
MLKARILAVAGAMAATTLAALPAPARADDGGQCTFPSKPYTGRPWALQRVNLDELWAQSTGKNVQVAVIDTGVDVKNPQLKKAVDASKGENLLPTKNSKGEEIDRGNNQGTTDTVGHGTRVAGIIAARPVKGTGFVGLAPDATIIPVKQNDAEGNGTAGTLAQAIKHAVDKGADVINISQDTAKAVAPEASLQQAVDYALDRKVVVVASAGNDGLGGNVKRTYPASYPGVLAVAASDRNNERASFSQAGDFVGVAAPGVDMISTVPGGGHCSDNGTSFSAPYVAGVAALLKSKYPAWTAQQVVAQIEQTAERSIPGHDRNVGWGVVDPVKALTDVDPKHPVESPKPENGVVRAAAPDVAPVHFGETADERNTRLATYVVVGGLVLVAGLGGTAVAVRDARRRRARLGGG
>NZ_CP029788.1|WP_110631386.1|6129597_6130845_+|hypothetical-protein
MPTLSRIPPRLRLPLAGALALTVAAAVGVTLLTRDDDGGHRAANAAQLKRACGGLLPYADLRDRVPDDVRGEVDEYGTLLDPGQESRSLLNCTLDWKDRGGLHVEATTLVNRLPFEVKTEDLLTPGHEAPGVTGRMADDKRLWIVAECPNGITGRARKATQLYVSAGVDKASTLTGFRVAVAVANGIASRAHCGTAPAALPTRVLDTYEEHAAAGGPVDSGDYDDIRVDEPGRGVRKCAWSAAKGSAPLPGTWTVTGDLQDSRLLSVCGGERRTDPGGGLADPQPADLEPLAFDTASWTGELGAEAYRDYREEGRSPGFDDRSDNTLTEQDAALALWARSECAAGTTYHRVSIRPNLAHLADPELGGHTLTRAERAGLSRAVSRLMTGYLTAPDGWPKAQHCHDTKLLGEVEEWR
>NZ_CP029788.1|WP_110631389.1|6131928_6132474_-|hypothetical-protein
MRTKALLASGAALLLAAPVLAGCSSDEPKQEFAVPKALCGVDVPGDALARLLPAAGERVTSRHEDGGGPGAGLCNVSVDGTQVLVVSMERIPADRTSAGKILTERLRGFDQKYAEGGSIAYRAGAAASLVKCRAADVQKEDISLFVQTWKPGREDETAMKEFISGYTASLKKQQPCLKKVG
>NZ_CP029788.1|WP_110631391.1|6132470_6134777_-|hypothetical-protein
MALTYTDLVQVDLGKLGSAVADWKKTVDGLKKAAESAVQGMQAKADRARWAGVNATVTREFIGKTAKEIGDLHAEANSIYQVLDDGHTELVALQKQLKQAVDGDAAGLGVRVEDNGDGTVRCFFPHVRGDTDERTQEQLDSLQALESRINQILAHAAEIDSSVARALEKSHGNDAHDAGHAAYESLNDAESERAVELARKGHKMTDAELRELNELLRYNSAEKDGEFATQFYQGLGGPEKALQFYADMSIDGTDPDATKTRLAAVQDLQKVMGYTLANATDPDHAHHVPDSWAAEFRRLGTKPIGWEAGQMNKPYGYQVLGGLLRYGNYDPRFLTPIAEHVTQLHKKDPYFFLSNKPGGWPDSYGFNPSGGLGSGNDPLNSVLEALGHSPEASEKFFTQPPTAYNEDGTVKKDGKPGFDSYLDLFTDKDFEWTIDTNDNNVLIDEDKTKKALTFGPEALGHALESATTGRPYDSDDTGDAIKHTEARAGLVRDIVDKFGEHPELIRHNENGDIDEESGPLYALRGSLGDITGEYMGDFQRAMYQEGDGSDLLPTFGEAANLDSGHAARFLGEVGQDPDAYATITTAQQAYTANVVDHVINGESHSTASLDGRVGAAVAPGAAIAGVMSDARAHAIYEYHTASDKEYNEAAADKQKWVDRILGMGIEKVGERVPIAGTALGWASEDIQDSIMKSIEKDTTTEAQAEAGQNYTEGRNAAIGSAEKAVDHALVNNQAINPDTAEDLRRAARVQAGVSHSDGAQWKSESSGS
>NZ_CP029788.1|WP_110631395.1|6134789_6135263_-|hypothetical-protein
MAWDEWEQMKAQAAERQSTRMRLNQLPADGGGGGGGDLVVHQDDLGAVGHDAFLLYDSLRKEADITTAGASGGGAGSTGQAGAHLKSHNFATGAALEKTVEVWSSQLKSVLQACAHISDHLDYSQKRHAEDDTRIGTVLRAADGSAVSVSQLDGYFK
>NZ_CP029788.1|WP_110631398.1|6135865_6136213_+|hypothetical-protein
MAGSQKLQDAAVISLQKQMYEKYEATLKRVHRLQGVIDSLEGQWHGIGRAEFDRKQIEINESIQNIGNILGQVIDAMTKTRNIKDSKEDEVRAAAARIDVRDGAATTPPSALSSY
>NZ_CP029788.1|WP_110631401.1|6136265_6136565_+|WXG100-family-type-VII-secretion-target
MSRNADGLQVTYDGLDSAATSIGNEAKALEQDLAELRRMVVQSQEYWAGDAQSTFHEKLQRWDKEANDIHQALTGIGHVVHQAGGEYMAGDKKAASYFQ

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Crispr_ID: NZ_CP029788_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_10

6577842-6577916

Orphan

Consensus_repeat	Method
GCCGCCGGACGCCCCGCCCGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_10

>merge|NZ_CP029788|10|6577842-6577916|CRISPRCasFinder
CCCGACGGCCGCACCGGACTCGCTGGACGACCGTTTCGTCTCCGCGACCGGCACGCTGGGCGCCCCCGCCGCCCC

>NZ_CP029788|10|10|6577842-6577916|CRISPRCasFinder
CCCGACGGCCGCACCGGACTCGC	TGGACGACCGTTTCGTCTCCGCGACCGG
CACGCTGGGCGCCCCCGCCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110632336.1\|6584586_6585396_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP029788.1\|WP_110632330.1\|6582304_6583342_-\|DUF2637-domain-containing-protein	unknown	unknown	gnl\|CDD\|378511
NZ_CP029788.1\|WP_110632342.1\|6586854_6588543_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377939
NZ_CP029788.1\|WP_110632295.1\|6568213_6568888_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NZ_CP029788.1\|WP_110632292.1\|6566798_6568046_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|130740
NZ_CP029788.1\|WP_110632327.1\|6579425_6581168_+\|pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|180614
NZ_CP029788.1\|WP_110632319.1\|6576318_6577302_-\|TrmB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224296
NZ_CP029788.1\|WP_110632316.1\|6575772_6576255_-\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|377293
NZ_CP029788.1\|WP_162655631.1\|6573354_6574749_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225080
NZ_CP029788.1\|WP_110632298.1\|6568944_6570270_+\|radical-SAM-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110632310.1\|6574745_6575246_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP029788.1\|WP_110632348.1\|6589799_6590384_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP029788.1\|WP_110632351.1\|6590386_6592774_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|132240
NZ_CP029788.1\|WP_110632313.1\|6575252_6575660_-\|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274925
NZ_CP029788.1\|WP_110637203.1\|6585902_6586673_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110632304.1\|6572144_6573248_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234988
NZ_CP029788.1\|WP_110632345.1\|6588906_6589800_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP029788.1\|WP_110632301.1\|6570452_6571916_+\|cellulose-binding-protein	unknown	unknown	gnl\|CDD\|366161
NZ_CP029788.1\|WP_110632333.1\|6583621_6584455_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|378676
NZ_CP029788.1\|WP_110637201.1\|6581778_6582204_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110632336.1\|6584586_6585396_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.42545e-39
NZ_CP029788.1\|WP_110632330.1\|6582304_6583342_-\|DUF2637-domain-containing-protein	gnl\|CDD\|378511	pfam10935, DUF2637, Protein of unknown function (DUF2637). This family of proteins has no known function.	6.20281e-13
NZ_CP029788.1\|WP_110632342.1\|6586854_6588543_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	5.00794e-28
NZ_CP029788.1\|WP_110632295.1\|6568213_6568888_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	1.10438e-47
NZ_CP029788.1\|WP_110632292.1\|6566798_6568046_-\|FAD-binding-protein	gnl\|CDD\|130740	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.	6.61803e-44
NZ_CP029788.1\|WP_110632327.1\|6579425_6581168_+\|pyruvate-dehydrogenase	gnl\|CDD\|180614	PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.	0
NZ_CP029788.1\|WP_110632319.1\|6576318_6577302_-\|TrmB-family-transcriptional-regulator	gnl\|CDD\|224296	COG1378, COG1378, Predicted transcriptional regulators [Transcription].	1.26896e-11
NZ_CP029788.1\|WP_110632316.1\|6575772_6576255_-\|DUF456-domain-containing-protein	gnl\|CDD\|377293	pfam04306, DUF456, Protein of unknown function (DUF456). This family is a putative membrane protein that contains glycine zipper motifs.	2.33563e-19
NZ_CP029788.1\|WP_162655631.1\|6573354_6574749_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	9.47076e-60
NZ_CP029788.1\|WP_110632310.1\|6574745_6575246_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.60403e-55
NZ_CP029788.1\|WP_110632348.1\|6589799_6590384_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	4.89808e-63
NZ_CP029788.1\|WP_110632351.1\|6590386_6592774_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|132240	TIGR03196, pucD, xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.	0
NZ_CP029788.1\|WP_110632313.1\|6575252_6575660_-\|PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|274925	TIGR04023, Pyridoxamine_5'-phosphate_oxidase, PPOX class F420-dependent enzyme, MSMEG_5819/OxyR family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. This subfamily within the PPOX family occurs in at least 19 distinct species of F420 producers and is likely to bind F420 rather than FMN. The member OxyR was shown to use F420 to catalyze a C5a-C11a reduction in oxytetracycline biosynthesis. [Unknown function, Enzymes of unknown specificity].	4.11109e-57
NZ_CP029788.1\|WP_110632345.1\|6588906_6589800_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	5.49009e-60
NZ_CP029788.1\|WP_110632304.1\|6572144_6573248_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234988	PRK01889, PRK01889, GTPase RsgA; Reviewed.	0
NZ_CP029788.1\|WP_110632301.1\|6570452_6571916_+\|cellulose-binding-protein	gnl\|CDD\|366161	pfam00553, CBM_2, Cellulose binding domain. Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.	2.72131e-33
NZ_CP029788.1\|WP_110632333.1\|6583621_6584455_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|378676	pfam11575, FhuF_C, FhuF 2Fe-2S C-terminal domain. This family consists of several bacterial ferric iron reductase protein (FhuF) sequences. FhuF is involved in the reduction of ferric iron in cytoplasmic ferrioxamine B. This domain is the C-terminal domain that contains 4 conserved cysteine residues that are found to be part of a 2Fe-2S cluster.	7.83203e-05
NZ_CP029788.1\|WP_110637201.1\|6581778_6582204_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	7.34023e-17

>NZ_CP029788.1|WP_110632319.1|6576318_6577302_-|TrmB-family-transcriptional-regulator
MLAAIGLDETHESAYRALVALGAADVPDLARRLSRGERDTERALRWLERQGLAARSSARPGRWVAAPPAVALGALLTQQRHELEQAELAAALLAEEYRAASAEPAVHDLVEVVTGAAAVAQRFLQLQLGAGEEVCALVTGNPVVVSGTENEAEERAAARGVRYRVVVERPVLDLPHGMTELTAALSRDEEVRVVESVPTKLVVADRSLALVPLTSRSAEPAALVVHASGLLELLQGLFESVWRDALPLRLGRDGVTEQGPDGPDGTDLEILSLLLAGLTDASVAKQLDLGLRTVQRRVKRLMELTGVTTRLQLGWHAHERGWVARGR
>NZ_CP029788.1|WP_110632316.1|6575772_6576255_-|DUF456-domain-containing-protein
MGVWELLLVGVVLLLGLCGVLVPGVPGSWLVWAAVMWWALKDPRPLAWGVLVGATVVLLLSQVVRWALPPRRLRTGGATPRMGVYAGLGALAGFVLLPVVGAIPGFVGGIYLSERLRLGRHGEARAAVRTAMRSGGWSVLAELFACLLIAGAWLGVVLGG
>NZ_CP029788.1|WP_110632313.1|6575252_6575660_-|PPOX-class-F420-dependent-oxidoreductase
MTTTHSGEATTGRFSEAERAYLRTQRLGRMATVDPRGQPQANPVGFFLQDDGTILIGGYALGTTKKWRNLRKNPKIALVVDDVVSVRPWRVRGVDIRGEAELLVGPHDLGPHFSEELIRIHPRRVHSWGLEDGDA
>NZ_CP029788.1|WP_110632310.1|6574745_6575246_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MTGPIRYTETPSPLGTLLLTAADDGALTSLSVPGQKGGRSVEDGWVRDPAPFREAEEQLAAYFAGDLKEFRLRLRPHGTAFRQRVWDALDAVPYGATTTYGEIAARIGAPRAAVRAVGGAIGANPLLVLRPCHRVIGANGSLTGYAGGLERKQRLLALEGSLPEAW
>NZ_CP029788.1|WP_162655631.1|6573354_6574749_+|helix-turn-helix-domain-containing-protein
MMDEETRYEAVRSRDGRFDGVFFFGVETTGIYCRPSCPAVTPKRRNVRFFATAAAAQGSGFRACRRCRPDAVPGSAEWNARADVVGRAMRLIGDGVVDREGVAGLAARLGYSARQVQRQLTAELGAGPVALARAQRAHTARVLLQTTGLPVTEIAFASGFASVRQFNDTVRAVYAATPTALRDAAPRGSRSGTPGAGIPLRLAHRGPYQAGPVFDRLASEAVPGVEEVTGPPGRRVFRRTLRLPYGTGIVAVDERPGAARPGGGAHPGGWLHTRLHLTDPRDLTTAVQRLRRLFDLDADPYAVDERLGADPRLAPLVAARPGLRVPGAADPEEFAVRALVGTAEAQRLVQRYGKALDAPCGTLTHLFPEPGVLAEAEPGGPLGALAAALADGAVRLDAGADRDDAQQALLAVDGVDAATAAAVRARALGDPDVAPPGADVPDTWRPWRTYAVHHLLVAGEWELT
>NZ_CP029788.1|WP_110632304.1|6572144_6573248_+|ribosome-small-subunit-dependent-GTPase-A
MTSTSSSPSTPSSLLPYGWDEDWADAFAPYAAEGLLPGRVLRVDRGQCDVATDGGVLRADTAFVTPHDPMRVVCTGDWVAVEPGGNPRYVRAYLPRRTAFVRSTSSKRSEGQILAANVDHAIIAVSLGVELDLGRIERFLALAWESGAQPVVVLTKADLVPDAVTLSYLAQDVETTAPGVPVIPVSAELREGLDVLAAVVSGGTSVLLGQSGAGKSTLANALLGEDVMDVQATRDVDGKGRHTTTTRNLLVMPGGGVLIDTPGLRGVGLWDAETGVGQVFAEIEELAEDCRFHDCAHESEPGCAVRDAIDSGELPARRLESYRKLKRENQRIVAKTDARVRAELRRDWKRKGAIGRAAMEAKRGRLR
>NZ_CP029788.1|WP_110632301.1|6570452_6571916_+|cellulose-binding-protein
MPDLPTPQDATEAAQFTECWDAVLSYADLCTAGTSAAPTLAREAFARGLREVRDAEAVTRRGPGRRPARLPRIPLLLTAVRATAADWEATGRGHHLDPDLRLWLNSPQAARHTGRRPLALRALRDLQEPDAELLWLAEVEALPLRAVARRLGLDPAAAAEELDQVRVLFRDRCRRAHLDAPLDTECRSYAHLLDAVTRRPGTDTPEDLSRHLATCPDCAEAVSCLRLHGGTLPAALAGGVLGWGGLAYLERRRRAAEVRAGARTPAAEQPGEPDRTRRTRGGLLAAAGLVSLLALAVTLMPLGSDGDAAGARTDDPDRRQAAGALPDVPPTRPALTHSATPKHPTVTATSAPPARTTAPSRPQNPDPEPQGTASTTGEAASVAAACTVGYRLLNQWPDGFQAAVTVTTADALTDWHVDWSFRDGQRITQMWNAQATQNGPHVTADAADYDRSVPAGGTVSFGFLATWSERNTAPYGFTLNGHPCKTG
>NZ_CP029788.1|WP_110632298.1|6568944_6570270_+|radical-SAM-protein
MGSRTALVEDLMERFPHVPREAVFKEDLLRGGVAFDPSALSDNESGEVKPKSYFIFSFDHGTLPELGEAALRRPPEEIILTGGPYDLRRTVVSVRVNPASPYRVAADEEGMLGLYLDGRRIADVGVPPMPEYYRHKLSNGKSVMEVAPTIQWGYLIYLTVFRVCQYFGAKEECQYCDINHNWRQHKAAGRPYTGVKDVEEVLEALEIIDRYDTQKASTAYTLTGGAITKTVSGRDEADFYGHYAKAIEERFPGRWIGKVVAQALPKADVQRFKDYGVQIYHPNYEVWDEYLFKMYCPGKERYVGRDEWHKRILDSADVFGARNVIPNFVAGVEMAEPFGFKTVDEAIASTTEGLRFFMSHGITPRFTTWCPEPTTPLGKANPQGAPLEYHIRLLQAYRQTMEDFGLSSPPGYGPPGPGRAVFSVSSFMDSLPAQEPAATTP
>NZ_CP029788.1|WP_110632295.1|6568213_6568888_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MDASPLPADLPLTELTRHRRLREQGSLRRADLEAILDAGFVCHLGVVVDGRPLVVPTVYGRDERWLYVHGSVASRSLAGGAPVCVTVTHVDGLVLARSVFEHGVNYRSAVVHGDARPVTDPEEKLEGLRRLTEHAAPGQWAYARRPNRKELAATTLLAVSLEHASVKIRTGAPDDGDGPDAALGLWAGVLPLTSVWGAPVTDPALPRDTPVPAHLARRGGTRQG
>NZ_CP029788.1|WP_110632292.1|6566798_6568046_-|FAD-binding-protein
MTVTNWAGNITYSAAEPYRPRSLEELRALVAGAAAVRVLGSGHSFNEIAEPGAGGVLLSLDALPAGTDVDTAARTVRVGGGMRYAELARRVHAHGLALPNMASLPHISVAGSVATGTHGSGVGNGPLGDAVREVELVTADGSTVVIGRDDARFGGAVTSLGALGVVTALTLDLEPAYEVEQHLFTELPADGWDFETVAAAAYSVSLFTDWRDPGFRQVWLKRRTDQPLTAFPWAVPAKVALHPVPGMPAGNCTEQFGVPGPWHERLPHFRAEFTPSSGAELQSEYLLPRRHAERALRALHEVREAVAPVLQTCEVRTVAGDRQWLSPSYGRDTVAVHFTWIEDTASVLPAVRRVEEALEPFEPRPHWGKVFTTPAEVLRERYPRLGDFRRLVAELDPAGKFTNAFVRRVLGGGGA
>NZ_CP029788.1|WP_110632327.1|6579425_6581168_+|pyruvate-dehydrogenase
MAKQNIAEQFVDILVRAGVRRLYGVVGDSLNPVVDAVRRNAAIDWIHVRHEETAAFAAGAEAQITGRLAACAGSCGPGNLHLINGLYDAHRSMAPVLALASHIPSGEIGLGYFQETHPDQLFRECSHYCELISSPKQMPRLLHTAIQHAVGRSGVSVVALPGDLADQPAPEKAAESALVTSRPTVRPGDAEIDRLVELIDGAERVTLFCGSGCAGAHAEVMEFAEKIKSPVGHALRGKEHIQYDNPFDVGMSGLLGYGAAYEATHECDLLILLGTDFPYNAFLPDDVKIAQVDVRPEHLGRRSKLDLAVWGDVRETLRCLTPRVKPKENRRFLDKMLKKHADALEGVVKAYTRKVDKHIPVHPEYVAAVLDELADDDAVFTVDTGMCNVWAARYITPNGRRRVIGSFSHGSMANALPMAIGAQFTDRGRQVVSMSGDGGFAMLMGDFLTLVQYDLPVKVVLFNNSALSMVELEMLVAGLPSHGTTNKNPDFAAVARACGAYGVRVEKPKQLAGALKDAFKHKGPALVDVVTDPNALSIPPKISADMVTGFALSASKIVLDGGVGRMLQMARSNLRNVPRP
>NZ_CP029788.1|WP_110637201.1|6581778_6582204_+|ATP-binding-protein
MAAEETGSAADGPGAPRLERRLGRADLKAVPEARRAVRELLRHWGRPGRSEIAELLTSELVTNALVHTDHDAVLTATVGTHALRVEVRDGLARRPRPCVPHADDGTHGRGLVLVQALADAWGVKTHSAGKVVWFELGAEAA
>NZ_CP029788.1|WP_110632330.1|6582304_6583342_-|DUF2637-domain-containing-protein
MRLTDISLNWLLPGAVLLLGMLAAVAVLARGKRSSGEHAKTEDSWERAEERRRRKEALYGTASYVLLFCCAAVAAALSFHGLVGFGRQNLNLSGGWEYLVPFGLDGAAMFCSVLAVREASHGDAALGSRILVWTFAGAAAWFNWVHAPRGMGHDGAPQFFSGMSLSAAVLFDRALKQTRRAALREQGLIPRPLPQIRIVRWLRAPRETYKAWSLMLLEGVRSLDEAVDEVREDKRQKEESRRLRREKERVERAQLKAISRGHRGFVGRGTGREVEVAVERDDERVSAEPAISAEQLPVRSRPSLQPVRSGSDPITVDLTAEDDTQALPRLDSLERKLKDLEQQFG
>NZ_CP029788.1|WP_110632333.1|6583621_6584455_-|(2Fe-2S)-binding-protein
MPVPPSAVADSYARLTEVFPGLAVTELGPGERAPQGGGWVAAAALAGGGADLDAFLEWDDAQVLRDYGQRARPDVVASFGLHRYAWPACLLITVPWFLHRRVPRYPVTHVSYDRTAGRMAVRPASFACLPGDPAVALPGARVVADEEALRAEVRGAVAEHLEPLLAAFGPRMRRRGRALWGTATDEVVEGLWYVAHLLGEEERARRELELLLPGATRPYAGSAAFRELTGPDGERLPTRDRASCCMFYTVRPADTCVTCPRTCDAERVAKLATTAVS
>NZ_CP029788.1|WP_110632336.1|6584586_6585396_+|GntR-family-transcriptional-regulator
MTPSTDKPGGGPVKQGVQGSAGPGIPATRGRPASVPAQPSAADVNAAARGEHTHGEQPADRPLIQRASVRGQILDALRTALVSGELKPGEVYSAPALGERFGVSATPVREAMQQLALEGAVEVVPNRGFRVVERDARELAELAEVRSLIEMPVMLRLARTVPVERWAELRPLAEATVRAASSGCRATYAEADRAFHRAVLGLAGNAQLVRIADDLHRRAQWPLIGAAGRWGRADLIADAAEHTALLDALIAGNVDVVRALVSEHFAGAT
>NZ_CP029788.1|WP_110637203.1|6585902_6586673_-|hypothetical-protein
MAHTAMSGTGTTAGDDPLQTAVWRLRSRACWTDAAALLSPVTPGAALQRAALLVERCLYTEQGWEDAEDALRTAEALALGDEERGAAACERGYLAYAATLLGVRDRADEARAALGRAAALIPPGGAGRALLDFRRGLLAENLTRSPQAARAAYRRAHAGAIAGSDALLLSFTWRHLAGLALRDGELAEARQGFAESLRIREELGYLVGTAPALASLADTETEPEASRLREEARRLFRLLGGVPTWLARQLTPPAAA
>NZ_CP029788.1|WP_110632342.1|6586854_6588543_-|PucR-family-transcriptional-regulator
MRLRALLDTDALGLRLLGGEDELDRTVRGVMTTDLRDPSRYLSGGELVLTGLAWRRDADDSEPFVRILVQAGVAALAAGEAELGDVPDDLVVACARHRLPLFAVHESVAFATITEHVVRQVSGERAGDLAAVVDRHRRMMTSGPAGGGPDVVLDLLGSDLDLRAWVLSPTGRLIAGPKPGGQQPAGPELPGEVCAQLAGEHLAATRTGRRGPHRVTLGTTTYSLFPIRTNGRSPQPSRDVRETVLSEWLLAVEADASDWPEERLDLLQGVTQLIAVERDRRDAARTVRRRLAQEVLELVQTGAAPAEIAARLRVAAPVLLPGLGAAPHWQVVVARVEWDGGEIDGGPVAQSLLEEVLVDPLSTGPEPSDRIAVAHTGDEAIALVPLPAVGGEADGSETGVLADQLLRSVRDPLTAGLDGDGRLTLGVSAAVHSAEGLRGALEEARHARRVAAARPGRVCAAGHQELASHVLLLPFVPDDVRRAFTARLLDPLRDYDRRHRAELIPTLEAFLDCDGSWTRCATRLHLHVNTLRYRVGRIEQLTSRDLSRLEDKLDFFLALRMS
>NZ_CP029788.1|WP_110632345.1|6588906_6589800_+|xanthine-dehydrogenase-family-protein-subunit-M
MDFLRPASWEEALAAKAEHPTAVPIAGGTDVMVEINFDHRRPEYLLDLNRVGDLYEWEVGEESVRLGASVPYTKIMDNLRAELPGLALASHTVASPQIRNRGGVGGNLGTASPAGDAHPALLAAGAEVEVASAARGTRLIPIDDFYTGVKRNALQPDELIRAVHIKKADGPQQYSKVGTRNAMVIAVCAFGLALHPETRTVRTGIGSAAPTPVRAKAAEEFLNAALEEGGFWDNGKIITPSVAKQFADLCSAACNPIDDVRGTASYRRHAVGVMARRTLTWTWESYRGTRRASEGAA
>NZ_CP029788.1|WP_110632348.1|6589799_6590384_+|(2Fe-2S)-binding-protein
MRVNFTVNGRPQEADDVWEGESLLYVLRERLGLPGSKNACEQGECGSCTVRLDGVPVCSCLVAAGQVEGRDVVTVEGLADYAKQRAEHGGCASGACGTSLDEAQQWQAKGTDSQTGEGTELSPIQQAFIDAGAVQCGFCTPGLLVAADEMLERNPNPTDADIREALSGNLCRCTGYEKIMDAVRLAAARQGEAV
>NZ_CP029788.1|WP_110632351.1|6590386_6592774_+|molybdopterin-dependent-oxidoreductase
MASPSGTPTKITQGAQTKGGIGESTLRPDGTLKVTGEFAYSSDMWHEDMLWGQILRSTVAHAEIVSIDTAEALATPGVYAVMTYDDLPAEVKNYGLEIQDTPVLAHGKVRHHGEPVAIVAADHPETARRAAAKIKVEYRELPVITDEASALAPDAILVHEGRDDHHIGHVPHPNIVHRQPIVRGDVAEARKRADVIVEGEYTFGMQDQAFLGPESGLAVPEEDGGVHLYIATQWLHSDLRQIAPVLGLPEEKVRMTLAGVGGAFGGREDLSMQIHACLLALRTGKPVKIVYNRFESFFGHVHRHPAKLYYEHGATKDGKLTHMKCRIVLDGGAYASASPAVVGNASSLSVGPYVIDDVDIEAIALYTNNPPCGAMRGFGAVQACFAYEAQMDKLAKKLGMDPVEFRQLNAMEQGTLMPTGQPVDSPAPVAELLRRVKAMPMPPERQWESSEGADVRQLPGGLSNTTHGEGVVRGVGYAVGIKNVGFSEGFDDYSTAKVRMEVVGGEPVATVHTAMAEVGQGGITVHAQIARTELGVQQVTIHPADTQVGSAGSTSASRQTYVTGGAVKNACELVREKVLEIGRRKFGSYHPAWATAELLLESGKVVTDGGEVLADLVDVLEGEAVEVEEEWRHRPTEPFDLRTGQGFGHVQYSFAAHRAVVEVDTELGLVKVIELACAQDVGKALNPLSVIGQIQGGTTQGLGVAVMEEIIVDPKTAKVKNPSFTDYLIPTILDTPTIPVDVLELADDHAPYGLRGIGEAPTLSSTPAVLAAIRNATGLELNRTPVRPEHLTGTA

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Crispr_ID: NZ_CP029788_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_11

6578220-6578296

Orphan

Consensus_repeat	Method
GCCGCCGGACGCCCCGCCCGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_11

>merge|NZ_CP029788|11|6578220-6578296|CRISPRCasFinder
GCCGCCGGACGCCCCGCCCGCGCCACCGTCGCCGTCCGCGGTCCCCGCACCCCCGCTGCCGGACGCCCCGCCCGCGC

>NZ_CP029788|11|11|6578220-6578296|CRISPRCasFinder
GCCGCCGGACGCCCCGCCCGCGC	CACCGTCGCCGTCCGCGGTCCCCGCACCCCC
GCTGCCGGACGCCCCGCCCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110632336.1\|6584586_6585396_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP029788.1\|WP_110632330.1\|6582304_6583342_-\|DUF2637-domain-containing-protein	unknown	unknown	gnl\|CDD\|378511
NZ_CP029788.1\|WP_110632342.1\|6586854_6588543_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377939
NZ_CP029788.1\|WP_110632295.1\|6568213_6568888_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NZ_CP029788.1\|WP_110632292.1\|6566798_6568046_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|130740
NZ_CP029788.1\|WP_110632327.1\|6579425_6581168_+\|pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|180614
NZ_CP029788.1\|WP_110632319.1\|6576318_6577302_-\|TrmB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224296
NZ_CP029788.1\|WP_110632316.1\|6575772_6576255_-\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|377293
NZ_CP029788.1\|WP_162655631.1\|6573354_6574749_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225080
NZ_CP029788.1\|WP_110632298.1\|6568944_6570270_+\|radical-SAM-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110632310.1\|6574745_6575246_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP029788.1\|WP_110632348.1\|6589799_6590384_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP029788.1\|WP_110632351.1\|6590386_6592774_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|132240
NZ_CP029788.1\|WP_110632313.1\|6575252_6575660_-\|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274925
NZ_CP029788.1\|WP_110637203.1\|6585902_6586673_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110632304.1\|6572144_6573248_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234988
NZ_CP029788.1\|WP_110632345.1\|6588906_6589800_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP029788.1\|WP_110632301.1\|6570452_6571916_+\|cellulose-binding-protein	unknown	unknown	gnl\|CDD\|366161
NZ_CP029788.1\|WP_110632333.1\|6583621_6584455_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|378676
NZ_CP029788.1\|WP_110637201.1\|6581778_6582204_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110632336.1\|6584586_6585396_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.42545e-39
NZ_CP029788.1\|WP_110632330.1\|6582304_6583342_-\|DUF2637-domain-containing-protein	gnl\|CDD\|378511	pfam10935, DUF2637, Protein of unknown function (DUF2637). This family of proteins has no known function.	6.20281e-13
NZ_CP029788.1\|WP_110632342.1\|6586854_6588543_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	5.00794e-28
NZ_CP029788.1\|WP_110632295.1\|6568213_6568888_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	1.10438e-47
NZ_CP029788.1\|WP_110632292.1\|6566798_6568046_-\|FAD-binding-protein	gnl\|CDD\|130740	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.	6.61803e-44
NZ_CP029788.1\|WP_110632327.1\|6579425_6581168_+\|pyruvate-dehydrogenase	gnl\|CDD\|180614	PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.	0
NZ_CP029788.1\|WP_110632319.1\|6576318_6577302_-\|TrmB-family-transcriptional-regulator	gnl\|CDD\|224296	COG1378, COG1378, Predicted transcriptional regulators [Transcription].	1.26896e-11
NZ_CP029788.1\|WP_110632316.1\|6575772_6576255_-\|DUF456-domain-containing-protein	gnl\|CDD\|377293	pfam04306, DUF456, Protein of unknown function (DUF456). This family is a putative membrane protein that contains glycine zipper motifs.	2.33563e-19
NZ_CP029788.1\|WP_162655631.1\|6573354_6574749_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	9.47076e-60
NZ_CP029788.1\|WP_110632310.1\|6574745_6575246_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.60403e-55
NZ_CP029788.1\|WP_110632348.1\|6589799_6590384_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	4.89808e-63
NZ_CP029788.1\|WP_110632351.1\|6590386_6592774_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|132240	TIGR03196, pucD, xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.	0
NZ_CP029788.1\|WP_110632313.1\|6575252_6575660_-\|PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|274925	TIGR04023, Pyridoxamine_5'-phosphate_oxidase, PPOX class F420-dependent enzyme, MSMEG_5819/OxyR family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. This subfamily within the PPOX family occurs in at least 19 distinct species of F420 producers and is likely to bind F420 rather than FMN. The member OxyR was shown to use F420 to catalyze a C5a-C11a reduction in oxytetracycline biosynthesis. [Unknown function, Enzymes of unknown specificity].	4.11109e-57
NZ_CP029788.1\|WP_110632345.1\|6588906_6589800_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	5.49009e-60
NZ_CP029788.1\|WP_110632304.1\|6572144_6573248_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234988	PRK01889, PRK01889, GTPase RsgA; Reviewed.	0
NZ_CP029788.1\|WP_110632301.1\|6570452_6571916_+\|cellulose-binding-protein	gnl\|CDD\|366161	pfam00553, CBM_2, Cellulose binding domain. Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.	2.72131e-33
NZ_CP029788.1\|WP_110632333.1\|6583621_6584455_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|378676	pfam11575, FhuF_C, FhuF 2Fe-2S C-terminal domain. This family consists of several bacterial ferric iron reductase protein (FhuF) sequences. FhuF is involved in the reduction of ferric iron in cytoplasmic ferrioxamine B. This domain is the C-terminal domain that contains 4 conserved cysteine residues that are found to be part of a 2Fe-2S cluster.	7.83203e-05
NZ_CP029788.1\|WP_110637201.1\|6581778_6582204_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	7.34023e-17

>NZ_CP029788.1|WP_110632319.1|6576318_6577302_-|TrmB-family-transcriptional-regulator
MLAAIGLDETHESAYRALVALGAADVPDLARRLSRGERDTERALRWLERQGLAARSSARPGRWVAAPPAVALGALLTQQRHELEQAELAAALLAEEYRAASAEPAVHDLVEVVTGAAAVAQRFLQLQLGAGEEVCALVTGNPVVVSGTENEAEERAAARGVRYRVVVERPVLDLPHGMTELTAALSRDEEVRVVESVPTKLVVADRSLALVPLTSRSAEPAALVVHASGLLELLQGLFESVWRDALPLRLGRDGVTEQGPDGPDGTDLEILSLLLAGLTDASVAKQLDLGLRTVQRRVKRLMELTGVTTRLQLGWHAHERGWVARGR
>NZ_CP029788.1|WP_110632316.1|6575772_6576255_-|DUF456-domain-containing-protein
MGVWELLLVGVVLLLGLCGVLVPGVPGSWLVWAAVMWWALKDPRPLAWGVLVGATVVLLLSQVVRWALPPRRLRTGGATPRMGVYAGLGALAGFVLLPVVGAIPGFVGGIYLSERLRLGRHGEARAAVRTAMRSGGWSVLAELFACLLIAGAWLGVVLGG
>NZ_CP029788.1|WP_110632313.1|6575252_6575660_-|PPOX-class-F420-dependent-oxidoreductase
MTTTHSGEATTGRFSEAERAYLRTQRLGRMATVDPRGQPQANPVGFFLQDDGTILIGGYALGTTKKWRNLRKNPKIALVVDDVVSVRPWRVRGVDIRGEAELLVGPHDLGPHFSEELIRIHPRRVHSWGLEDGDA
>NZ_CP029788.1|WP_110632310.1|6574745_6575246_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MTGPIRYTETPSPLGTLLLTAADDGALTSLSVPGQKGGRSVEDGWVRDPAPFREAEEQLAAYFAGDLKEFRLRLRPHGTAFRQRVWDALDAVPYGATTTYGEIAARIGAPRAAVRAVGGAIGANPLLVLRPCHRVIGANGSLTGYAGGLERKQRLLALEGSLPEAW
>NZ_CP029788.1|WP_162655631.1|6573354_6574749_+|helix-turn-helix-domain-containing-protein
MMDEETRYEAVRSRDGRFDGVFFFGVETTGIYCRPSCPAVTPKRRNVRFFATAAAAQGSGFRACRRCRPDAVPGSAEWNARADVVGRAMRLIGDGVVDREGVAGLAARLGYSARQVQRQLTAELGAGPVALARAQRAHTARVLLQTTGLPVTEIAFASGFASVRQFNDTVRAVYAATPTALRDAAPRGSRSGTPGAGIPLRLAHRGPYQAGPVFDRLASEAVPGVEEVTGPPGRRVFRRTLRLPYGTGIVAVDERPGAARPGGGAHPGGWLHTRLHLTDPRDLTTAVQRLRRLFDLDADPYAVDERLGADPRLAPLVAARPGLRVPGAADPEEFAVRALVGTAEAQRLVQRYGKALDAPCGTLTHLFPEPGVLAEAEPGGPLGALAAALADGAVRLDAGADRDDAQQALLAVDGVDAATAAAVRARALGDPDVAPPGADVPDTWRPWRTYAVHHLLVAGEWELT
>NZ_CP029788.1|WP_110632304.1|6572144_6573248_+|ribosome-small-subunit-dependent-GTPase-A
MTSTSSSPSTPSSLLPYGWDEDWADAFAPYAAEGLLPGRVLRVDRGQCDVATDGGVLRADTAFVTPHDPMRVVCTGDWVAVEPGGNPRYVRAYLPRRTAFVRSTSSKRSEGQILAANVDHAIIAVSLGVELDLGRIERFLALAWESGAQPVVVLTKADLVPDAVTLSYLAQDVETTAPGVPVIPVSAELREGLDVLAAVVSGGTSVLLGQSGAGKSTLANALLGEDVMDVQATRDVDGKGRHTTTTRNLLVMPGGGVLIDTPGLRGVGLWDAETGVGQVFAEIEELAEDCRFHDCAHESEPGCAVRDAIDSGELPARRLESYRKLKRENQRIVAKTDARVRAELRRDWKRKGAIGRAAMEAKRGRLR
>NZ_CP029788.1|WP_110632301.1|6570452_6571916_+|cellulose-binding-protein
MPDLPTPQDATEAAQFTECWDAVLSYADLCTAGTSAAPTLAREAFARGLREVRDAEAVTRRGPGRRPARLPRIPLLLTAVRATAADWEATGRGHHLDPDLRLWLNSPQAARHTGRRPLALRALRDLQEPDAELLWLAEVEALPLRAVARRLGLDPAAAAEELDQVRVLFRDRCRRAHLDAPLDTECRSYAHLLDAVTRRPGTDTPEDLSRHLATCPDCAEAVSCLRLHGGTLPAALAGGVLGWGGLAYLERRRRAAEVRAGARTPAAEQPGEPDRTRRTRGGLLAAAGLVSLLALAVTLMPLGSDGDAAGARTDDPDRRQAAGALPDVPPTRPALTHSATPKHPTVTATSAPPARTTAPSRPQNPDPEPQGTASTTGEAASVAAACTVGYRLLNQWPDGFQAAVTVTTADALTDWHVDWSFRDGQRITQMWNAQATQNGPHVTADAADYDRSVPAGGTVSFGFLATWSERNTAPYGFTLNGHPCKTG
>NZ_CP029788.1|WP_110632298.1|6568944_6570270_+|radical-SAM-protein
MGSRTALVEDLMERFPHVPREAVFKEDLLRGGVAFDPSALSDNESGEVKPKSYFIFSFDHGTLPELGEAALRRPPEEIILTGGPYDLRRTVVSVRVNPASPYRVAADEEGMLGLYLDGRRIADVGVPPMPEYYRHKLSNGKSVMEVAPTIQWGYLIYLTVFRVCQYFGAKEECQYCDINHNWRQHKAAGRPYTGVKDVEEVLEALEIIDRYDTQKASTAYTLTGGAITKTVSGRDEADFYGHYAKAIEERFPGRWIGKVVAQALPKADVQRFKDYGVQIYHPNYEVWDEYLFKMYCPGKERYVGRDEWHKRILDSADVFGARNVIPNFVAGVEMAEPFGFKTVDEAIASTTEGLRFFMSHGITPRFTTWCPEPTTPLGKANPQGAPLEYHIRLLQAYRQTMEDFGLSSPPGYGPPGPGRAVFSVSSFMDSLPAQEPAATTP
>NZ_CP029788.1|WP_110632295.1|6568213_6568888_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MDASPLPADLPLTELTRHRRLREQGSLRRADLEAILDAGFVCHLGVVVDGRPLVVPTVYGRDERWLYVHGSVASRSLAGGAPVCVTVTHVDGLVLARSVFEHGVNYRSAVVHGDARPVTDPEEKLEGLRRLTEHAAPGQWAYARRPNRKELAATTLLAVSLEHASVKIRTGAPDDGDGPDAALGLWAGVLPLTSVWGAPVTDPALPRDTPVPAHLARRGGTRQG
>NZ_CP029788.1|WP_110632292.1|6566798_6568046_-|FAD-binding-protein
MTVTNWAGNITYSAAEPYRPRSLEELRALVAGAAAVRVLGSGHSFNEIAEPGAGGVLLSLDALPAGTDVDTAARTVRVGGGMRYAELARRVHAHGLALPNMASLPHISVAGSVATGTHGSGVGNGPLGDAVREVELVTADGSTVVIGRDDARFGGAVTSLGALGVVTALTLDLEPAYEVEQHLFTELPADGWDFETVAAAAYSVSLFTDWRDPGFRQVWLKRRTDQPLTAFPWAVPAKVALHPVPGMPAGNCTEQFGVPGPWHERLPHFRAEFTPSSGAELQSEYLLPRRHAERALRALHEVREAVAPVLQTCEVRTVAGDRQWLSPSYGRDTVAVHFTWIEDTASVLPAVRRVEEALEPFEPRPHWGKVFTTPAEVLRERYPRLGDFRRLVAELDPAGKFTNAFVRRVLGGGGA
>NZ_CP029788.1|WP_110632327.1|6579425_6581168_+|pyruvate-dehydrogenase
MAKQNIAEQFVDILVRAGVRRLYGVVGDSLNPVVDAVRRNAAIDWIHVRHEETAAFAAGAEAQITGRLAACAGSCGPGNLHLINGLYDAHRSMAPVLALASHIPSGEIGLGYFQETHPDQLFRECSHYCELISSPKQMPRLLHTAIQHAVGRSGVSVVALPGDLADQPAPEKAAESALVTSRPTVRPGDAEIDRLVELIDGAERVTLFCGSGCAGAHAEVMEFAEKIKSPVGHALRGKEHIQYDNPFDVGMSGLLGYGAAYEATHECDLLILLGTDFPYNAFLPDDVKIAQVDVRPEHLGRRSKLDLAVWGDVRETLRCLTPRVKPKENRRFLDKMLKKHADALEGVVKAYTRKVDKHIPVHPEYVAAVLDELADDDAVFTVDTGMCNVWAARYITPNGRRRVIGSFSHGSMANALPMAIGAQFTDRGRQVVSMSGDGGFAMLMGDFLTLVQYDLPVKVVLFNNSALSMVELEMLVAGLPSHGTTNKNPDFAAVARACGAYGVRVEKPKQLAGALKDAFKHKGPALVDVVTDPNALSIPPKISADMVTGFALSASKIVLDGGVGRMLQMARSNLRNVPRP
>NZ_CP029788.1|WP_110637201.1|6581778_6582204_+|ATP-binding-protein
MAAEETGSAADGPGAPRLERRLGRADLKAVPEARRAVRELLRHWGRPGRSEIAELLTSELVTNALVHTDHDAVLTATVGTHALRVEVRDGLARRPRPCVPHADDGTHGRGLVLVQALADAWGVKTHSAGKVVWFELGAEAA
>NZ_CP029788.1|WP_110632330.1|6582304_6583342_-|DUF2637-domain-containing-protein
MRLTDISLNWLLPGAVLLLGMLAAVAVLARGKRSSGEHAKTEDSWERAEERRRRKEALYGTASYVLLFCCAAVAAALSFHGLVGFGRQNLNLSGGWEYLVPFGLDGAAMFCSVLAVREASHGDAALGSRILVWTFAGAAAWFNWVHAPRGMGHDGAPQFFSGMSLSAAVLFDRALKQTRRAALREQGLIPRPLPQIRIVRWLRAPRETYKAWSLMLLEGVRSLDEAVDEVREDKRQKEESRRLRREKERVERAQLKAISRGHRGFVGRGTGREVEVAVERDDERVSAEPAISAEQLPVRSRPSLQPVRSGSDPITVDLTAEDDTQALPRLDSLERKLKDLEQQFG
>NZ_CP029788.1|WP_110632333.1|6583621_6584455_-|(2Fe-2S)-binding-protein
MPVPPSAVADSYARLTEVFPGLAVTELGPGERAPQGGGWVAAAALAGGGADLDAFLEWDDAQVLRDYGQRARPDVVASFGLHRYAWPACLLITVPWFLHRRVPRYPVTHVSYDRTAGRMAVRPASFACLPGDPAVALPGARVVADEEALRAEVRGAVAEHLEPLLAAFGPRMRRRGRALWGTATDEVVEGLWYVAHLLGEEERARRELELLLPGATRPYAGSAAFRELTGPDGERLPTRDRASCCMFYTVRPADTCVTCPRTCDAERVAKLATTAVS
>NZ_CP029788.1|WP_110632336.1|6584586_6585396_+|GntR-family-transcriptional-regulator
MTPSTDKPGGGPVKQGVQGSAGPGIPATRGRPASVPAQPSAADVNAAARGEHTHGEQPADRPLIQRASVRGQILDALRTALVSGELKPGEVYSAPALGERFGVSATPVREAMQQLALEGAVEVVPNRGFRVVERDARELAELAEVRSLIEMPVMLRLARTVPVERWAELRPLAEATVRAASSGCRATYAEADRAFHRAVLGLAGNAQLVRIADDLHRRAQWPLIGAAGRWGRADLIADAAEHTALLDALIAGNVDVVRALVSEHFAGAT
>NZ_CP029788.1|WP_110637203.1|6585902_6586673_-|hypothetical-protein
MAHTAMSGTGTTAGDDPLQTAVWRLRSRACWTDAAALLSPVTPGAALQRAALLVERCLYTEQGWEDAEDALRTAEALALGDEERGAAACERGYLAYAATLLGVRDRADEARAALGRAAALIPPGGAGRALLDFRRGLLAENLTRSPQAARAAYRRAHAGAIAGSDALLLSFTWRHLAGLALRDGELAEARQGFAESLRIREELGYLVGTAPALASLADTETEPEASRLREEARRLFRLLGGVPTWLARQLTPPAAA
>NZ_CP029788.1|WP_110632342.1|6586854_6588543_-|PucR-family-transcriptional-regulator
MRLRALLDTDALGLRLLGGEDELDRTVRGVMTTDLRDPSRYLSGGELVLTGLAWRRDADDSEPFVRILVQAGVAALAAGEAELGDVPDDLVVACARHRLPLFAVHESVAFATITEHVVRQVSGERAGDLAAVVDRHRRMMTSGPAGGGPDVVLDLLGSDLDLRAWVLSPTGRLIAGPKPGGQQPAGPELPGEVCAQLAGEHLAATRTGRRGPHRVTLGTTTYSLFPIRTNGRSPQPSRDVRETVLSEWLLAVEADASDWPEERLDLLQGVTQLIAVERDRRDAARTVRRRLAQEVLELVQTGAAPAEIAARLRVAAPVLLPGLGAAPHWQVVVARVEWDGGEIDGGPVAQSLLEEVLVDPLSTGPEPSDRIAVAHTGDEAIALVPLPAVGGEADGSETGVLADQLLRSVRDPLTAGLDGDGRLTLGVSAAVHSAEGLRGALEEARHARRVAAARPGRVCAAGHQELASHVLLLPFVPDDVRRAFTARLLDPLRDYDRRHRAELIPTLEAFLDCDGSWTRCATRLHLHVNTLRYRVGRIEQLTSRDLSRLEDKLDFFLALRMS
>NZ_CP029788.1|WP_110632345.1|6588906_6589800_+|xanthine-dehydrogenase-family-protein-subunit-M
MDFLRPASWEEALAAKAEHPTAVPIAGGTDVMVEINFDHRRPEYLLDLNRVGDLYEWEVGEESVRLGASVPYTKIMDNLRAELPGLALASHTVASPQIRNRGGVGGNLGTASPAGDAHPALLAAGAEVEVASAARGTRLIPIDDFYTGVKRNALQPDELIRAVHIKKADGPQQYSKVGTRNAMVIAVCAFGLALHPETRTVRTGIGSAAPTPVRAKAAEEFLNAALEEGGFWDNGKIITPSVAKQFADLCSAACNPIDDVRGTASYRRHAVGVMARRTLTWTWESYRGTRRASEGAA
>NZ_CP029788.1|WP_110632348.1|6589799_6590384_+|(2Fe-2S)-binding-protein
MRVNFTVNGRPQEADDVWEGESLLYVLRERLGLPGSKNACEQGECGSCTVRLDGVPVCSCLVAAGQVEGRDVVTVEGLADYAKQRAEHGGCASGACGTSLDEAQQWQAKGTDSQTGEGTELSPIQQAFIDAGAVQCGFCTPGLLVAADEMLERNPNPTDADIREALSGNLCRCTGYEKIMDAVRLAAARQGEAV
>NZ_CP029788.1|WP_110632351.1|6590386_6592774_+|molybdopterin-dependent-oxidoreductase
MASPSGTPTKITQGAQTKGGIGESTLRPDGTLKVTGEFAYSSDMWHEDMLWGQILRSTVAHAEIVSIDTAEALATPGVYAVMTYDDLPAEVKNYGLEIQDTPVLAHGKVRHHGEPVAIVAADHPETARRAAAKIKVEYRELPVITDEASALAPDAILVHEGRDDHHIGHVPHPNIVHRQPIVRGDVAEARKRADVIVEGEYTFGMQDQAFLGPESGLAVPEEDGGVHLYIATQWLHSDLRQIAPVLGLPEEKVRMTLAGVGGAFGGREDLSMQIHACLLALRTGKPVKIVYNRFESFFGHVHRHPAKLYYEHGATKDGKLTHMKCRIVLDGGAYASASPAVVGNASSLSVGPYVIDDVDIEAIALYTNNPPCGAMRGFGAVQACFAYEAQMDKLAKKLGMDPVEFRQLNAMEQGTLMPTGQPVDSPAPVAELLRRVKAMPMPPERQWESSEGADVRQLPGGLSNTTHGEGVVRGVGYAVGIKNVGFSEGFDDYSTAKVRMEVVGGEPVATVHTAMAEVGQGGITVHAQIARTELGVQQVTIHPADTQVGSAGSTSASRQTYVTGGAVKNACELVREKVLEIGRRKFGSYHPAWATAELLLESGKVVTDGGEVLADLVDVLEGEAVEVEEEWRHRPTEPFDLRTGQGFGHVQYSFAAHRAVVEVDTELGLVKVIELACAQDVGKALNPLSVIGQIQGGTTQGLGVAVMEEIIVDPKTAKVKNPSFTDYLIPTILDTPTIPVDVLELADDHAPYGLRGIGEAPTLSSTPAVLAAIRNATGLELNRTPVRPEHLTGTA

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Crispr_ID: NZ_CP029788_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_12

6907611-6907834

Orphan

Consensus_repeat	Method
GTCCGGCCCGCAGCCGCCGCCCG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP029788_12

>merge|NZ_CP029788|12|6907611-6907834|CRISPRCasFinder
GCCGGGACGGCCGCCGCGGCCCCGCCGCCGGACGGCGGCGCCCCCACCGACACCAGCAGGAGCAGCAGCACGGCGACCCAGACCCGCCGCCCGCCCCGCACGGCAGCGGTCGCGCCCGTCATCCGGCTCCGCCCCGTCCGGCCCGCAGCCGCCGCCCGCTCCGCGGGACCGCCGTCGCGCTCCCTCATCCCGCACCGCCCTGGCCGGCCCGCAGCCGCCGCCCG

>NZ_CP029788|12|12|6907611-6907834|CRISPRCasFinder
GCCGGGACGGCCGCCGCGGCCCC	GCCGCCGGACGGCGGCGCCCCCACCGACACCAGCAGGAGCAGCAGCA
CGGCGACCCAGACCCGCCGCCCG	CCCCGCACGGCAGCGGTCGCGCCCGTCATCCGGCTCCGCCCC
GTCCGGCCCGCAGCCGCCGCCCG	CTCCGCGGGACCGCCGTCGCGCTCCCTCATCCCGCACCGCCCT
GGCCGGCCCGCAGCCGCCGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110633060.1\|6910087_6911641_-\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224720
NZ_CP029788.1\|WP_110633045.1\|6901971_6903387_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366747
NZ_CP029788.1\|WP_110633050.1\|6904591_6905059_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029788.1\|WP_110633072.1\|6917419_6919507_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237358
NZ_CP029788.1\|WP_110633042.1\|6900814_6901975_+\|metabolite-traffic-protein-EboE	unknown	unknown	gnl\|CDD\|366542
NZ_CP029788.1\|WP_162655644.1\|6911637_6914157_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133062
NZ_CP029788.1\|WP_110633039.1\|6899962_6900811_+\|hydrolase-TatD	unknown	unknown	gnl\|CDD\|224024
NZ_CP029788.1\|WP_110633057.1\|6908789_6910091_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293737
NZ_CP029788.1\|WP_110633053.1\|6905048_6906518_-\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277324
NZ_CP029788.1\|WP_110637264.1\|6921052_6922045_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP029788.1\|WP_110633075.1\|6919730_6921047_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP029788.1\|WP_110633048.1\|6903383_6904532_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|366542
NZ_CP029788.1\|WP_110633036.1\|6898506_6899379_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|366542
NZ_CP029788.1\|WP_110637262.1\|6922076_6922916_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP029788.1\|WP_110633030.1\|6896330_6897455_+\|myo-inositol-1-phosphate-synthase	unknown	unknown	gnl\|CDD\|369641
NZ_CP029788.1\|WP_162655645.1\|6914576_6914894_+\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|198080
NZ_CP029788.1\|WP_110633027.1\|6894908_6896246_+\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|377643
NZ_CP029788.1\|WP_110637260.1\|6915234_6916218_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176205
NZ_CP029788.1\|WP_110633033.1\|6897451_6898510_+\|UbiA-family-prenyltransferase	unknown	unknown	gnl\|CDD\|260127
NZ_CP029788.1\|WP_110633069.1\|6916321_6917017_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|313370

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110633060.1\|6910087_6911641_-\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	2.34939e-20
NZ_CP029788.1\|WP_110633045.1\|6901971_6903387_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	2.95817e-70
NZ_CP029788.1\|WP_110633050.1\|6904591_6905059_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.96396e-19
NZ_CP029788.1\|WP_110633072.1\|6917419_6919507_+\|elongation-factor-G	gnl\|CDD\|237358	PRK13351, PRK13351, elongation factor G-like protein.	0
NZ_CP029788.1\|WP_110633042.1\|6900814_6901975_+\|metabolite-traffic-protein-EboE	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	4.04276e-09
NZ_CP029788.1\|WP_162655644.1\|6911637_6914157_-\|glycosyltransferase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	1.47819e-62
NZ_CP029788.1\|WP_110633039.1\|6899962_6900811_+\|hydrolase-TatD	gnl\|CDD\|224024	COG1099, COG1099, Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only].	5.67769e-89
NZ_CP029788.1\|WP_110633057.1\|6908789_6910091_-\|hypothetical-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	1.28616e-83
NZ_CP029788.1\|WP_110633053.1\|6905048_6906518_-\|metallophosphoesterase-family-protein	gnl\|CDD\|277324	cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.49799e-09
NZ_CP029788.1\|WP_110637264.1\|6921052_6922045_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.79886e-66
NZ_CP029788.1\|WP_110633075.1\|6919730_6921047_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.49705e-68
NZ_CP029788.1\|WP_110633048.1\|6903383_6904532_+\|TIM-barrel-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	8.43368e-16
NZ_CP029788.1\|WP_110633036.1\|6898506_6899379_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	1.42552e-33
NZ_CP029788.1\|WP_110637262.1\|6922076_6922916_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.15217e-77
NZ_CP029788.1\|WP_110633030.1\|6896330_6897455_+\|myo-inositol-1-phosphate-synthase	gnl\|CDD\|369641	pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate catalyzes the conversion of glucose-6- phosphate to inositol-1-phosphate, which is then dephosphorylated to inositol. Inositol phosphates play an important role in signal transduction.	1.03916e-91
NZ_CP029788.1\|WP_162655645.1\|6914576_6914894_+\|ANTAR-domain-containing-protein	gnl\|CDD\|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	7.2597e-15
NZ_CP029788.1\|WP_110633027.1\|6894908_6896246_+\|DUF1080-domain-containing-protein	gnl\|CDD\|377643	pfam06283, ThuA, Trehalose utilisation. This family consists of several bacterial ThuA like proteins. ThuA appears to be involved in utilisation of trehalose. The thuA and thuB genes form part of the trehalose/sucrose transport operon thuEFGKAB, which is located on the pSymB megaplasmid. The thuA and thuB genes are induced in vitro by trehalose but not by sucrose and the extent of its induction depends on the concentration of trehalose available in the medium.	1.58453e-109
NZ_CP029788.1\|WP_110637260.1\|6915234_6916218_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176205	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	6.38597e-160
NZ_CP029788.1\|WP_110633033.1\|6897451_6898510_+\|UbiA-family-prenyltransferase	gnl\|CDD\|260127	cd13964, PT_UbiA_1, UbiA family of prenyltransferases (PTases), Unknown subgroup. Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.	3.24003e-53
NZ_CP029788.1\|WP_110633069.1\|6916321_6917017_+\|nucleotidyltransferase	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	1.2858e-17

>NZ_CP029788.1|WP_110633053.1|6905048_6906518_-|metallophosphoesterase-family-protein
MSRPPRPRRVRGALCALALGTGAALAFAPAAHADLPGAEPQLTRAPYLSDPTTASMQISWATTTQSRGFVRYGPPGDCAARTATSASLGSPITVGTAREYATSVTLTGLSPDTRYCYRVYTAAGTDLLGTLPTPSFTTPEPAAAAGPFTFAVLGDTGETTDSGVNDGSVNVHQANVLDGIARSGARFVVQTGDNTHPGTSQTQYGDLAQTGPDVSAWFGPSYWAQPGMRVPLVGIVGNHSMTATYLAVWRQQSLAAASGGVWAMADYPSYLGSAAVSYPTTYYAFTTGGIRFYLLDTAWGNSNTGAATGGSCGAHCAIYEQDAHAHWQDASAEHAWLRADLAAHPGVPKFAFFHFPLRSDSASEPGDTFLAGLEQTLLEGGVDLVFNGHSHVYQRNSAGDGRIVSYVTGGGGATVHSVGENGCSAADAYAVGWSYARDHGSACGSAPVPVDDAQVYHFLKVSVDGTAVTVAPTDSLGHTFDVQTYTVTP
>NZ_CP029788.1|WP_110633050.1|6904591_6905059_+|winged-helix-turn-helix-transcriptional-regulator
MPRDEQPLASDVRLVHLLHAAHTRLTRVSAAALAPHGVDGHDLAVLAALADGAPLSQAQTARRLGLDRTTMAALLDGLEDHGLVRRRRCTEDRRRNLVELTPDGLECLRRAERAHRAAERRFLAPLDEETATTLVRALRALTATDGAPVSAPVME
>NZ_CP029788.1|WP_110633048.1|6903383_6904532_+|TIM-barrel-protein
MTDLRTSDEPLRRTLGLDRRRFLSTCTAVAAGAIAAPVLGAAPVHAATAPAAEPTGTGHALVPADRRGIILYTVRDAIGRDPLSTPLPSGFRAVFEQLARFGYRQVEFAGYGQHANAPGGASLESVAGARLLRGWLDEFGLRAQGNHGFIPPSWPLTTADLDTFKRHLEIANILGMAHMGTGGDPTSSSYKADWDVAADKWNTLGEIARRAGIKLYTHNHDAAYNFLLDGGPLDAQGRPTRSSGIRKLEYFLTVTDPQLVWLEMDVFWAHVAQYKFRAYTAHDGSAQTNVFDPAGLVERYDKRYPLFHAKDGVTNTTNGMGYDMVPFGTGVIDYTTFFSRVGHRNYHNPMVEQDNAPSATDPAQSLRHARIGYDNLARLRRR
>NZ_CP029788.1|WP_110633045.1|6901971_6903387_+|alkaline-phosphatase-family-protein
MTAPGAPTPLLVLDVVGLTPRLLPHMPHLKALADTGSRAHLGTVLPAVTCAAQSTFLTGTHPGEHGIVGNGWYFRELGDVLLWRQHNGLVAGDKLWDAARRAHPGYTVANICWWYAMGADTDYTVTPRPVYYADGRKEPDCYTRPPALHDELTEKFGTFPLFHFWGPGADLVSSRWIIDATRHIQRTRHPDLTLCYLPHLDYDLQRYGPDDPRSLRAARDLDTALAPLLDDARAEGRTVVALSEYGITRVSRPVDINRALRRAGLLEVHTQDGMEYLDPMASRAFAVADHQIAHVYVRRPEDLDAARAVLQDLPGLDLLLDDEGKKAHHLDHPRSGELVAVAAPDAWFTYYYWLDDARAPDFAQLVEIHRKPGYDPAELFLDPLDPYVKVRAAGALARKKLGLRYRMAVVPLDPAPVRGSHGRLPASDDDGPLLLCSTPRAVGDRLAATDVKSLLLTLAGLDDGPYGKRHP
>NZ_CP029788.1|WP_110633042.1|6900814_6901975_+|metabolite-traffic-protein-EboE
MRFRHPDGTTVHLAYCTNVHPAETFDGVLAQLRDHCEPVRRRLGRDRLGIGLWLARDAARTLAADPSALRTLRDELDRRGLEVVTLNGFPYEGFGADEVKYRVYRPDWTDPERLEYTTALARVLTGLLPDDVTEGSVSTLPLAWRTAPGPHRALDALRVLGERLDALAELTGRSVRVGLEPEPGCVVETTGDALAPLTAIGHRRIGVCVDTCHLATSFEDPRRALDALTEARVPVVKAQLSAALHAGQPHLPQVRRALAAFAEPRFLHQTRTLTAAGLRGTDDLHEALTGDALPDAAPWRAHFHVPLHAAPAPPLTSTLPVLKAALARLVGGPRPLTRHLEVETYTWQALPPELRPRTRDRLADGIAAELTLARDLLTDLGLKELP
>NZ_CP029788.1|WP_110633039.1|6899962_6900811_+|hydrolase-TatD
MRIFDPHIHMTSRTTDDYEAMRAAGVRAVVEPAFWLGQPRTAPATFSDYFDSLLGWEPFRAAQYGIAHHCTIALNPKEANDPRCLPVLDELPRWLVKDRVVAVGEIGYDAMTPAEDKALAAQLQLAADHGLPALVHTPHRDKLAGLRRTLDAVRESALGTERVLLDHLNETTVDEAKDSGCWLGFSVYPDTKMDEARMVALLKAYGPERVLVNSAADWGRSDPLKTRKVGDLMLAEGFSEDDVDRVLWRNPVEFYGMSGRLVLDVAATAPTHEGNSVLRGGE
>NZ_CP029788.1|WP_110633036.1|6898506_6899379_+|sugar-phosphate-isomerase/epimerase
MTPGSPLLFGYGTNGLADLRLDDALALLADLGYDGVGLTLDHMHLDPLAPGLAERTRRVARRLDALGLQVTVETGARYVLDPRRKHGPSLLDPGPRDRDRRTGLLLRAVQVAAELGAHAVHCFSGVLPAGTDEDTAWKRLADALGPVLDAAASAGVPLAVEPEPGHLLATLADFHRLRRTLGDPGTLGLTLDIGHCLCLEPLSPADCIRDAAPWLRHVQIEDMRRGVHEHLPFGEGELDVPPVLAALAAAGYRGLTVVELPRHSHAGPHQAAVSLPFLRRAADTAQGSTP
>NZ_CP029788.1|WP_110633033.1|6897451_6898510_+|UbiA-family-prenyltransferase
MSPAARRAGRLRAWAELLRLPALVTVPGDVLAGTAAAGARPGRRTLLAAGASVCLYEAGMALNDWADRAEDAVDRPHRPLPSGRVRPAAALTAAGALTAAGLGLAARAGRPALTVAVPLAATVWAYDLVLKHTPAGPAAMAAARALDLLLGAAATTGRTRAALPSAALLGTHTLAVTTVSRTETRGGAPLAPLAALTATTLLAGALTRPASARTGPASGAATPTGALAPGSAGAVIERLTRALPSYFSGALAARSAGTRASRPTGTPTPGRPAHAVVPALTALYAATVARPYAHAVLNASPPLTQRAVGAGIRATVPLQAALAARSGARGTALVTAALAPLGARLARKVSIT
>NZ_CP029788.1|WP_110633030.1|6896330_6897455_+|myo-inositol-1-phosphate-synthase
MPASPSADRAGVWLVGARGSVATTVVAGCAALTAGLHPPTGLVTETAVCAGSGLPPLTALVFGGHDTTDCPLPKRAEQLAAGGVLPPGLPSAVAAELAAADREIRPGGPLPGDTRDADELITVFASDIQDFVYRHRLARAVVVNVASTEPAPTGTELPPSSLYAAAALRAGCPYVNFTPSTGLHHPALAAPLAASGLPYAGRDGKTGQTLLRAVLGPMFAQRALAVRAWSGTNLLGGGDGAALADPAAAAAKNAGKERVLADTLGAAPEGEVHIDDVPVLGDWKTAWDHVAFDGFLGTRMVLQTIWQGCDSALAAPLVLDLARFTARAHQIGLSGPLSDLGFYFKDPVGDGPAALGEQYAALVAFAGRLAGAAR
>NZ_CP029788.1|WP_110633027.1|6894908_6896246_+|DUF1080-domain-containing-protein
MRTTTRFTTAVAGAAVLLGCVTGPAVSKPGDGKHLLVFSKTAGFRHDSIPEGVAALRQLGAEAGYTVDATEDAGAFTPGTLRRYDAVVFLSTTGDVLDTAQQSAFEDYIHKGGGYVGIHAAADTEYDWAFYGGLAGAYFRSHPAIQPATVDVEDRAHPATSALAPTWERTDEWYDYRSNPRDRAHVLASLDETSYTGGTMNGDHPIAWCQEYQGGRAFYTGGGHTKESYAEPAFRAHLLGGIRYAAGDAQADCRPENGYRPLFDGTSLDGWKQAGPGSFTLDADGTLTSSGGLGLLWYTPRSFGSYSLKLDWKVAGDDNSGVFVGFPPSDDPWSAVNNGYEVQIDATDVPEKTTGSVYGFQSADLKKRDRALNPPGEWNTYEIRVQGERLRVWLNGVKINDFTNTDPARSLADGHIGIQNHGDGDQVSFRDIRIKELPAPPVKGD
>NZ_CP029788.1|WP_110633057.1|6908789_6910091_-|hypothetical-protein
MRAPGAALLLALLLAAVGGGPAAARESAGGAAAGPVGGTRTPVQHFVYVLQGDRTFDHYFGTYPGADGLTAGLRQPVEPERPERGTVAPYPLHGTAPAAPGAGPRLVRQQHDGGRMDAFVAAFTRQGRDGRLAMGHYDRRDLPFHWNAADRYELFDHFFASSLDGTRANRAHWVTGTPELTGPTVFDRLEEAGVSWKFYVQNYDPRATYRAAGGLSTQPLRVPLLAVPRFVDDPRLRAHIVDLGTYYRDLEAGTLPAVAFVAPSGAAERSARSVAAGQRLLRELTTQLMVSRYWPSSALLWSYDGSGGWYDHVRPPTGLGLRVPALLVGPYVPRGVVQHGRFEAASALRFVVENWRLRPLGGRAGTARSLADAFRFDAPPRRAELIPDGGPGTAALPVVRRPRPGPVYAIYGMASAVVAGLLWGAVRPRWRTS
>NZ_CP029788.1|WP_110633060.1|6910087_6911641_-|phospholipid-carrier-dependent-glycosyltransferase
MTDRSVLPAGAPRTAPAPTPSGAGVPAALPLAAVLLLAAGLRLWRLTATGFNSDEAVYTGTAASLAGDEQLGALFPVFRAHPVLFQSLLSLALRIHGGDGTARAVPALLGVATVAVTYALGRRLYGRAAGLVAALLLAVMPYHVVVSRQVLLDGPMTLCATGTLYCVVRYAESPAPRWLMAAGGTLGLTVLAKETSLVLLGSLYAFFALTPAVRTRGRALLPALAALAVVALAHPLSQAVSGHAQAGGSYLLWQMFRRANHPYDFYVREVPWSMGPLAVLAAGAGLVWLRRENTWRERLLVCWVAVPALFFTVWPVKGFQYLLPAAPVCAVLAARTLTGLPRTLRAPAQASRAGAVRRAVAVVAVAVVAVSLAVPAWARIPPQTSTRFLAGTGGLPGGREAGLWVRAHAPDGARLLAIGPSMANVVQYYGLRPVSALSVSPDPARRNPSYRAVPNPDRALRDGDFQYLVWDAYTARRTPFFTAQLERLTVRYHGAAVFRVNDLRGDPVVVVYRVRAS
>NZ_CP029788.1|WP_162655644.1|6911637_6914157_-|glycosyltransferase
MTHVVPSRPAARTGADGPPVPEPTDGGPAVSNPADGSPAEPDAVPDPADGIPAVLELGGGGGPAGPPRLTVVVPTRDERESVPLLLDRLGPALSGLGAEILFADDSDDDTVTELTALAPRCPVPVRLLHRPPGTRGGGLSGAVVAGIRAARGGWVLVMDADLQHPPQAAAVLARTAMREGVDIAVGTRYAGTGRSGGLAGAGRQATSSTATRLVKAAFPRRLATVSDPLSGLFAFRRDAVDPALLRPVGFKILLEILVRHPGARVAEVAYAFAPRQAGRSKASLREGLAFVRHVARLRHSVAGGQRQLARMAAFGLVGASGIAVNTAALWLFFEVLGLHHLLGAALATQFSTAWNFALTDTAVYRRGHRRGRRPGRAARFFALNNLLLLARLPLLQWLVLAGTGVLTANALTLVLLFALRFLVSDRLIYRAGEAKVRRRDPVKLLVDPDAAAAPPPHRRRSGYLPYRYDVAGTVTIGSQIRLPELEFFRAQWVPDADVDIAVRVGDVGRRRPRGRAALTEDHSGSAALRYEEHLGRLGANFRVRLGPPITVEVGPLLARSPHVVYTNVVEALLRFVLISRGRMLLHSACVELDGRGVMLSALTDTGKTATVLRLLREHGGRFLSDDMTVVDASGRAVCFPKPLTISAHTLRAVHAEDLTRGEWRRLALQSRLHSKGGRSIALLLSRFNLPIMGINALTQILVPPPKYSVDRLVPCRLGSSTEVKDLFVIERGAPDLYDLDPAEALERMLANTEDAYGFPPYRHLAPALRVGGLDHAELRAREREILAGFLSGVRTRVLASDCFGWADEIPRLLAGEETAAPVRTAEAWPRWDLRTFPAA
>NZ_CP029788.1|WP_162655645.1|6914576_6914894_+|ANTAR-domain-containing-protein
MPLDEPPGVEPVAPRDHATALLEALRAVFALVDELEALRTENRQLKEALEGRALIERAKGMLMAVRGCDEGTAFQLLVALSRKQGRKVRAVAADMTTGGAPLPLP
>NZ_CP029788.1|WP_110637260.1|6915234_6916218_+|zinc-binding-dehydrogenase
MRAVVLDEPGPVTRLHLRELPVPEPERGWVRIKVEAFGLNRSELHTRLGLAEGVTFPRVPGIEAVGTVDADPDGLLPPGQQVAALMGGMGRVFDGGYAEYTVVPRAQIVPFRSDLPWATLGAVPETLQTAYGSLTTGLDLRAGQTLLIRGGTSALGLATAALAKDLGATVLATSRRPERLDDLKRQGVDHPLLDDGDVAAQVRRLLPEGVDAALELVGTPTLPDTLRATRVHGTVCFTGMLSNEWTVPDFYPIGYLPTGVRLTAYGGEASDLPAPVLQTYLDRIAAGEISLGPVHTYALDDIRTAHRDLEEGRRVGKLVGLTGRPSA
>NZ_CP029788.1|WP_110633069.1|6916321_6917017_+|nucleotidyltransferase
MTAVRNILLSGVVGSTAYGLAHEGSDIDRLGLFAAPTEDLHGLHRPAESHVGTAPDRTLHEAAKWCRLALGGNPTVMELVWLPEELYEVRTPLGDELIGIRTSFLSARRVRDAYLGYATQQFRKLISRGATDEASRRTAKHARHLKRLCTQGFELYATGRLTIRVDDPDAYHRFGEQVAADPATAEPLLRRFETAFDETPSALPDHPDERPAEAWLRRVRRRFYDVPGATA
>NZ_CP029788.1|WP_110633072.1|6917419_6919507_+|elongation-factor-G
MRTTNTFDRTVAHPLAAVRNLGILAHVDAGKTTVTERILYATGTTHKRGEVHDGTTVTDFDPQERDRGITIFAAAVSCAWDGHRINLIDTPGHVDFADEVERSLRVLDGAVAVFDAVAGVEPQSEAVWRQADRHGVPRIAFVNKLDRAGADLDAAVASLRERLHPAPLVVQLPIGAEDAFTGVVDLLEMRALTWADGQDGMSAGPVPPELRAEAGRRRRLLEEQVAELHAGALEEFCATSRLSVPTLRGALRDLTGSGEGVVVLCGSAYRNRGIEPLLDAVVAWLPSPADRPPVDGMHDGVVQRRPADPAAPLAALAFKVQATPTGRLTYLRIYSGTIEKGDTVWDAGARRTERVGRILRVRADRHAPLERAVAGDIVAVVGLKAARAGSTLCAPDAPLVLEPPNVAEPVVSVAVEARRATDTERLAGALARLAEEDPSLVVRTDAETGQTVLSGRGELHLEVAAEKLRRDHGLEVNVGRPQVSYRETVARGVTGFVHRHVKQDGGAGQFAHIVLDVEPLDAGSGFVFRSAVTGGRVPQEYVRAVEAGCRDALAEGPLGGHRVTGLRVTLTDGSTHVKDSSEQAFRTAGRFGLREALRACALVLLEPVAEVAVTVPEDALGTVLGDLAARRGRVTGSTSRAGTATVTATVPLAELFGYATRLRSRTQGRGTFTARPAGHAPAPAATDTAAASATR
>NZ_CP029788.1|WP_110633075.1|6919730_6921047_+|sugar-ABC-transporter-substrate-binding-protein
MRSIRAAATGAVTLSLVLAASACGGGSSTGGGSNDSPKTLTYWASNQGASIEIDKKVLQPELDKFEKQTGIEVKLEVVPWSDLLNRILTATTSGQGPDVLNIGNTWSASLQATGALLPWDAQNFSKIGGKDRFVDSALGSTGVPGQDPAAVPLYSMAYALYYNKQIFADAGIAKPPATWAELVADGKKIQAKGKQVLGAEGANVSENIHHVFVFAKQHGADFFTADGKPDFTNPKVVDAVKQYVDLMAKDKAIPAGNAEYAQNQSVSDFAKGKTAMLLWQSASANLKSQGMSEDAYGIAPVPVQSGTPGAGTQVNSMVAGINLAVFKNTDNLDGAAKFVKFMTSDEEQKILNKAYSSIPPVKTAQADAAFTAPANAVLKDTLARSAAALPQVPDESQFETAVGTAVKELFADAAAGRAVTTESVKAKLEKAQQQMPAK
>NZ_CP029788.1|WP_110637264.1|6921052_6922045_+|sugar-ABC-transporter-permease
MTTTAAEPAVRKNSPGAAPSGTPRRRTGRIRRIGLPYLLLLPALVLELLVHLVPMVIGIVMSFKQLTQFYIRDWGTAPWSGLDNYKVSVDFDAPVGEALLHSFLVTVGFTLLSVGLCWLIGTAAAVFMQDTFRGRGLLRTLFLVPYALPVYTAVITWVFMFQHDNGLVNHVLHDQLHLTDEPSFWLIGDNSFWALLTVSVWKGWPFAFLIVMAGLQNIPGELYEAAALDGAGMWQQIRRITLPSLRPVNQVLVLVLFLWTFNDFNTPYVMFGKAAPQAADLISVHIYQASFVTWNFGTGSAMSVLLLLFLLLVTGVYLAVTSRGRRTADA
>NZ_CP029788.1|WP_110637262.1|6922076_6922916_+|carbohydrate-ABC-transporter-permease
MAPPRSFLWARRVFLTLLTGFVLLPVYVMVSSSLKPLADVSGTFRWLPSGLTIRPYIDIWSTVPLAKYFVNSLIVAGAATVCSVVIAVFAAYAVSRYDFRGKRVFTVTVLSTQMFPGILFLLPLFLLYVNIGNATGIALFGSRGGLILTYLTFSLPFSIWMLIGYFDSVPRDLDEAALVDGCGPLGALFRVVVPAAVPGIVAVAVYAFMTAWGEVLFASVMTNDTTRTLAVGLQGYSTLNDVYWNQIMAASLVVSVPVVAGFLLLQRYLVAGLTAGAVK

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Crispr_ID: NZ_CP029788_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_13

6917025-6917099

Orphan

Consensus_repeat	Method
GCGGGGCGGCCACCGGCCGGGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_13

>merge|NZ_CP029788|13|6917025-6917099|CRISPRCasFinder
GCGGGGCGGCCACCGGCCGGGAAACCATGTGCCTCCCGGCAGAGGGGCGGCGCGGGGCGGCCACCTGCCGGGAAA

>NZ_CP029788|13|13|6917025-6917099|CRISPRCasFinder
GCGGGGCGGCCACCGGCCGGGAAA	CCATGTGCCTCCCGGCAGAGGGGCGGC
GCGGGGCGGCCACCTGCCGGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110633077.1\|6922945_6924304_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
NZ_CP029788.1\|WP_110633060.1\|6910087_6911641_-\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224720
NZ_CP029788.1\|WP_110633083.1\|6926366_6926699_-\|deoxyxylulose-5-phosphate-synthase	unknown	unknown	unknown
NZ_CP029788.1\|WP_110637266.1\|6926862_6927261_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633069.1\|6916321_6917017_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|313370
NZ_CP029788.1\|WP_162655643.1\|6907794_6908805_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_162655644.1\|6911637_6914157_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133062
NZ_CP029788.1\|WP_110633050.1\|6904591_6905059_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029788.1\|WP_110637268.1\|6927352_6928405_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224315
NZ_CP029788.1\|WP_162655642.1\|6906514_6907732_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211415
NZ_CP029788.1\|WP_110633057.1\|6908789_6910091_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293737
NZ_CP029788.1\|WP_110633053.1\|6905048_6906518_-\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277324
NZ_CP029788.1\|WP_110633080.1\|6924447_6926346_+\|family-16-glycosylhydrolase	unknown	unknown	gnl\|CDD\|185693
NZ_CP029788.1\|WP_110633075.1\|6919730_6921047_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP029788.1\|WP_110633086.1\|6928512_6929070_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029788.1\|WP_110637262.1\|6922076_6922916_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP029788.1\|WP_110637260.1\|6915234_6916218_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176205
NZ_CP029788.1\|WP_162655645.1\|6914576_6914894_+\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|198080
NZ_CP029788.1\|WP_110637264.1\|6921052_6922045_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP029788.1\|WP_110633072.1\|6917419_6919507_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237358

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110633077.1\|6922945_6924304_+\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
NZ_CP029788.1\|WP_110633060.1\|6910087_6911641_-\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	2.34939e-20
NZ_CP029788.1\|WP_110633069.1\|6916321_6917017_+\|nucleotidyltransferase	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	1.2858e-17
NZ_CP029788.1\|WP_162655644.1\|6911637_6914157_-\|glycosyltransferase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	1.47819e-62
NZ_CP029788.1\|WP_110633050.1\|6904591_6905059_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.96396e-19
NZ_CP029788.1\|WP_110637268.1\|6927352_6928405_+\|hypothetical-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	1.24796e-06
NZ_CP029788.1\|WP_162655642.1\|6906514_6907732_-\|hypothetical-protein	gnl\|CDD\|211415	cd11574, GH99, Glycoside hydrolase family 99, an endo-alpha-1,2-mannosidase. This family of glycoside hydrolases 99 (following the CAZY nomenclature) includes endo-alpha-1,2-mannosidase (EC 3.2.1.130), which is an important membrane-associated eukaryotic enzyme involved in the maturation of N-linked glycans. Specifically, it cleaves mannoside linkages internal to N-linked glycan chains by hydrolyzing an alpha-1,2-mannosidic bond between a glucose-substituted mannose and the remainder of the chain. The biological function and significance of the soluble bacterial orthologs, which may have obtained the genes via horizontal transfer, is not clear.	4.86864e-25
NZ_CP029788.1\|WP_110633057.1\|6908789_6910091_-\|hypothetical-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	1.28616e-83
NZ_CP029788.1\|WP_110633053.1\|6905048_6906518_-\|metallophosphoesterase-family-protein	gnl\|CDD\|277324	cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.49799e-09
NZ_CP029788.1\|WP_110633080.1\|6924447_6926346_+\|family-16-glycosylhydrolase	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	2.27142e-74
NZ_CP029788.1\|WP_110633075.1\|6919730_6921047_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.49705e-68
NZ_CP029788.1\|WP_110633086.1\|6928512_6929070_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.33929e-11
NZ_CP029788.1\|WP_110637262.1\|6922076_6922916_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.15217e-77
NZ_CP029788.1\|WP_110637260.1\|6915234_6916218_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176205	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	6.38597e-160
NZ_CP029788.1\|WP_162655645.1\|6914576_6914894_+\|ANTAR-domain-containing-protein	gnl\|CDD\|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	7.2597e-15
NZ_CP029788.1\|WP_110637264.1\|6921052_6922045_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.79886e-66
NZ_CP029788.1\|WP_110633072.1\|6917419_6919507_+\|elongation-factor-G	gnl\|CDD\|237358	PRK13351, PRK13351, elongation factor G-like protein.	0

>NZ_CP029788.1|WP_110633069.1|6916321_6917017_+|nucleotidyltransferase
MTAVRNILLSGVVGSTAYGLAHEGSDIDRLGLFAAPTEDLHGLHRPAESHVGTAPDRTLHEAAKWCRLALGGNPTVMELVWLPEELYEVRTPLGDELIGIRTSFLSARRVRDAYLGYATQQFRKLISRGATDEASRRTAKHARHLKRLCTQGFELYATGRLTIRVDDPDAYHRFGEQVAADPATAEPLLRRFETAFDETPSALPDHPDERPAEAWLRRVRRRFYDVPGATA
>NZ_CP029788.1|WP_110637260.1|6915234_6916218_+|zinc-binding-dehydrogenase
MRAVVLDEPGPVTRLHLRELPVPEPERGWVRIKVEAFGLNRSELHTRLGLAEGVTFPRVPGIEAVGTVDADPDGLLPPGQQVAALMGGMGRVFDGGYAEYTVVPRAQIVPFRSDLPWATLGAVPETLQTAYGSLTTGLDLRAGQTLLIRGGTSALGLATAALAKDLGATVLATSRRPERLDDLKRQGVDHPLLDDGDVAAQVRRLLPEGVDAALELVGTPTLPDTLRATRVHGTVCFTGMLSNEWTVPDFYPIGYLPTGVRLTAYGGEASDLPAPVLQTYLDRIAAGEISLGPVHTYALDDIRTAHRDLEEGRRVGKLVGLTGRPSA
>NZ_CP029788.1|WP_162655645.1|6914576_6914894_+|ANTAR-domain-containing-protein
MPLDEPPGVEPVAPRDHATALLEALRAVFALVDELEALRTENRQLKEALEGRALIERAKGMLMAVRGCDEGTAFQLLVALSRKQGRKVRAVAADMTTGGAPLPLP
>NZ_CP029788.1|WP_162655644.1|6911637_6914157_-|glycosyltransferase
MTHVVPSRPAARTGADGPPVPEPTDGGPAVSNPADGSPAEPDAVPDPADGIPAVLELGGGGGPAGPPRLTVVVPTRDERESVPLLLDRLGPALSGLGAEILFADDSDDDTVTELTALAPRCPVPVRLLHRPPGTRGGGLSGAVVAGIRAARGGWVLVMDADLQHPPQAAAVLARTAMREGVDIAVGTRYAGTGRSGGLAGAGRQATSSTATRLVKAAFPRRLATVSDPLSGLFAFRRDAVDPALLRPVGFKILLEILVRHPGARVAEVAYAFAPRQAGRSKASLREGLAFVRHVARLRHSVAGGQRQLARMAAFGLVGASGIAVNTAALWLFFEVLGLHHLLGAALATQFSTAWNFALTDTAVYRRGHRRGRRPGRAARFFALNNLLLLARLPLLQWLVLAGTGVLTANALTLVLLFALRFLVSDRLIYRAGEAKVRRRDPVKLLVDPDAAAAPPPHRRRSGYLPYRYDVAGTVTIGSQIRLPELEFFRAQWVPDADVDIAVRVGDVGRRRPRGRAALTEDHSGSAALRYEEHLGRLGANFRVRLGPPITVEVGPLLARSPHVVYTNVVEALLRFVLISRGRMLLHSACVELDGRGVMLSALTDTGKTATVLRLLREHGGRFLSDDMTVVDASGRAVCFPKPLTISAHTLRAVHAEDLTRGEWRRLALQSRLHSKGGRSIALLLSRFNLPIMGINALTQILVPPPKYSVDRLVPCRLGSSTEVKDLFVIERGAPDLYDLDPAEALERMLANTEDAYGFPPYRHLAPALRVGGLDHAELRAREREILAGFLSGVRTRVLASDCFGWADEIPRLLAGEETAAPVRTAEAWPRWDLRTFPAA
>NZ_CP029788.1|WP_110633060.1|6910087_6911641_-|phospholipid-carrier-dependent-glycosyltransferase
MTDRSVLPAGAPRTAPAPTPSGAGVPAALPLAAVLLLAAGLRLWRLTATGFNSDEAVYTGTAASLAGDEQLGALFPVFRAHPVLFQSLLSLALRIHGGDGTARAVPALLGVATVAVTYALGRRLYGRAAGLVAALLLAVMPYHVVVSRQVLLDGPMTLCATGTLYCVVRYAESPAPRWLMAAGGTLGLTVLAKETSLVLLGSLYAFFALTPAVRTRGRALLPALAALAVVALAHPLSQAVSGHAQAGGSYLLWQMFRRANHPYDFYVREVPWSMGPLAVLAAGAGLVWLRRENTWRERLLVCWVAVPALFFTVWPVKGFQYLLPAAPVCAVLAARTLTGLPRTLRAPAQASRAGAVRRAVAVVAVAVVAVSLAVPAWARIPPQTSTRFLAGTGGLPGGREAGLWVRAHAPDGARLLAIGPSMANVVQYYGLRPVSALSVSPDPARRNPSYRAVPNPDRALRDGDFQYLVWDAYTARRTPFFTAQLERLTVRYHGAAVFRVNDLRGDPVVVVYRVRAS
>NZ_CP029788.1|WP_110633057.1|6908789_6910091_-|hypothetical-protein
MRAPGAALLLALLLAAVGGGPAAARESAGGAAAGPVGGTRTPVQHFVYVLQGDRTFDHYFGTYPGADGLTAGLRQPVEPERPERGTVAPYPLHGTAPAAPGAGPRLVRQQHDGGRMDAFVAAFTRQGRDGRLAMGHYDRRDLPFHWNAADRYELFDHFFASSLDGTRANRAHWVTGTPELTGPTVFDRLEEAGVSWKFYVQNYDPRATYRAAGGLSTQPLRVPLLAVPRFVDDPRLRAHIVDLGTYYRDLEAGTLPAVAFVAPSGAAERSARSVAAGQRLLRELTTQLMVSRYWPSSALLWSYDGSGGWYDHVRPPTGLGLRVPALLVGPYVPRGVVQHGRFEAASALRFVVENWRLRPLGGRAGTARSLADAFRFDAPPRRAELIPDGGPGTAALPVVRRPRPGPVYAIYGMASAVVAGLLWGAVRPRWRTS
>NZ_CP029788.1|WP_162655643.1|6907794_6908805_-|hypothetical-protein
MAYLVSRLLLLGAVVVAAVAGLVPTPAAAATPVTVTVRTTPQLAGVRFVFDGRSAVTGADGAVRFTGGHDRARHTLGVDDGGLSFADRRFSFARWAGQRDPDQAFRRTVGGLPLRRDYTVTAAFTARFRVTVRCVDQDGTAVPRERVPYVTVRADTGQTLRLPVERPVWLDGLLPVYRRSVLGSRAIVYSLQSAVAHGANTVDAGRQRFAPARVRQAVFTTPFHDLTVSARDAVFGSAAGRAARVTLPDGSVRQVPFGADRTATLRGLPHGQYRVEVTGGRGLRADRLVRLSRTQTVRVRVVSRADLALAGGTVLLFAAGLLLAGRRLRAGQGGAG
>NZ_CP029788.1|WP_162655642.1|6906514_6907732_-|hypothetical-protein
MTGATAAVRGGRRVWVAVLLLLLVSVGAPPSGGGAAAAVPAAGGARPPLLAYYYQWFQRSSWQRAKTDAPRLGPYSSDDASVVRTHIAWAKAAGIDGFVVSWKSTRVNDRRLDLLFAEARAQRFRVAVIYQGLDFHRRPLPVARVAADFRLLRDRYAADPAFFRIGGRPLTVFSGTWEYAAADVARVTGPVRDRLMVLGTEKNPAGVRRVAAATDGDAYYWSSVNPGTNDRHTAKLRAMAAAVHAAHGCWMAPFAPGFDARLVGGTRSVPRSGGRTLRAEYAAALASDPEVLGLISWNEFSENSHVEPSRAYGTQALDTLRELRGMPAPPAGSAPSGAARHTSPGYGPGLLRLAGCLALLVGAVAVLGRRGAGKRGGGGSRGRDGSQDRDGGGGRGAGSRRERRA
>NZ_CP029788.1|WP_110633053.1|6905048_6906518_-|metallophosphoesterase-family-protein
MSRPPRPRRVRGALCALALGTGAALAFAPAAHADLPGAEPQLTRAPYLSDPTTASMQISWATTTQSRGFVRYGPPGDCAARTATSASLGSPITVGTAREYATSVTLTGLSPDTRYCYRVYTAAGTDLLGTLPTPSFTTPEPAAAAGPFTFAVLGDTGETTDSGVNDGSVNVHQANVLDGIARSGARFVVQTGDNTHPGTSQTQYGDLAQTGPDVSAWFGPSYWAQPGMRVPLVGIVGNHSMTATYLAVWRQQSLAAASGGVWAMADYPSYLGSAAVSYPTTYYAFTTGGIRFYLLDTAWGNSNTGAATGGSCGAHCAIYEQDAHAHWQDASAEHAWLRADLAAHPGVPKFAFFHFPLRSDSASEPGDTFLAGLEQTLLEGGVDLVFNGHSHVYQRNSAGDGRIVSYVTGGGGATVHSVGENGCSAADAYAVGWSYARDHGSACGSAPVPVDDAQVYHFLKVSVDGTAVTVAPTDSLGHTFDVQTYTVTP
>NZ_CP029788.1|WP_110633050.1|6904591_6905059_+|winged-helix-turn-helix-transcriptional-regulator
MPRDEQPLASDVRLVHLLHAAHTRLTRVSAAALAPHGVDGHDLAVLAALADGAPLSQAQTARRLGLDRTTMAALLDGLEDHGLVRRRRCTEDRRRNLVELTPDGLECLRRAERAHRAAERRFLAPLDEETATTLVRALRALTATDGAPVSAPVME
>NZ_CP029788.1|WP_110633072.1|6917419_6919507_+|elongation-factor-G
MRTTNTFDRTVAHPLAAVRNLGILAHVDAGKTTVTERILYATGTTHKRGEVHDGTTVTDFDPQERDRGITIFAAAVSCAWDGHRINLIDTPGHVDFADEVERSLRVLDGAVAVFDAVAGVEPQSEAVWRQADRHGVPRIAFVNKLDRAGADLDAAVASLRERLHPAPLVVQLPIGAEDAFTGVVDLLEMRALTWADGQDGMSAGPVPPELRAEAGRRRRLLEEQVAELHAGALEEFCATSRLSVPTLRGALRDLTGSGEGVVVLCGSAYRNRGIEPLLDAVVAWLPSPADRPPVDGMHDGVVQRRPADPAAPLAALAFKVQATPTGRLTYLRIYSGTIEKGDTVWDAGARRTERVGRILRVRADRHAPLERAVAGDIVAVVGLKAARAGSTLCAPDAPLVLEPPNVAEPVVSVAVEARRATDTERLAGALARLAEEDPSLVVRTDAETGQTVLSGRGELHLEVAAEKLRRDHGLEVNVGRPQVSYRETVARGVTGFVHRHVKQDGGAGQFAHIVLDVEPLDAGSGFVFRSAVTGGRVPQEYVRAVEAGCRDALAEGPLGGHRVTGLRVTLTDGSTHVKDSSEQAFRTAGRFGLREALRACALVLLEPVAEVAVTVPEDALGTVLGDLAARRGRVTGSTSRAGTATVTATVPLAELFGYATRLRSRTQGRGTFTARPAGHAPAPAATDTAAASATR
>NZ_CP029788.1|WP_110633075.1|6919730_6921047_+|sugar-ABC-transporter-substrate-binding-protein
MRSIRAAATGAVTLSLVLAASACGGGSSTGGGSNDSPKTLTYWASNQGASIEIDKKVLQPELDKFEKQTGIEVKLEVVPWSDLLNRILTATTSGQGPDVLNIGNTWSASLQATGALLPWDAQNFSKIGGKDRFVDSALGSTGVPGQDPAAVPLYSMAYALYYNKQIFADAGIAKPPATWAELVADGKKIQAKGKQVLGAEGANVSENIHHVFVFAKQHGADFFTADGKPDFTNPKVVDAVKQYVDLMAKDKAIPAGNAEYAQNQSVSDFAKGKTAMLLWQSASANLKSQGMSEDAYGIAPVPVQSGTPGAGTQVNSMVAGINLAVFKNTDNLDGAAKFVKFMTSDEEQKILNKAYSSIPPVKTAQADAAFTAPANAVLKDTLARSAAALPQVPDESQFETAVGTAVKELFADAAAGRAVTTESVKAKLEKAQQQMPAK
>NZ_CP029788.1|WP_110637264.1|6921052_6922045_+|sugar-ABC-transporter-permease
MTTTAAEPAVRKNSPGAAPSGTPRRRTGRIRRIGLPYLLLLPALVLELLVHLVPMVIGIVMSFKQLTQFYIRDWGTAPWSGLDNYKVSVDFDAPVGEALLHSFLVTVGFTLLSVGLCWLIGTAAAVFMQDTFRGRGLLRTLFLVPYALPVYTAVITWVFMFQHDNGLVNHVLHDQLHLTDEPSFWLIGDNSFWALLTVSVWKGWPFAFLIVMAGLQNIPGELYEAAALDGAGMWQQIRRITLPSLRPVNQVLVLVLFLWTFNDFNTPYVMFGKAAPQAADLISVHIYQASFVTWNFGTGSAMSVLLLLFLLLVTGVYLAVTSRGRRTADA
>NZ_CP029788.1|WP_110637262.1|6922076_6922916_+|carbohydrate-ABC-transporter-permease
MAPPRSFLWARRVFLTLLTGFVLLPVYVMVSSSLKPLADVSGTFRWLPSGLTIRPYIDIWSTVPLAKYFVNSLIVAGAATVCSVVIAVFAAYAVSRYDFRGKRVFTVTVLSTQMFPGILFLLPLFLLYVNIGNATGIALFGSRGGLILTYLTFSLPFSIWMLIGYFDSVPRDLDEAALVDGCGPLGALFRVVVPAAVPGIVAVAVYAFMTAWGEVLFASVMTNDTTRTLAVGLQGYSTLNDVYWNQIMAASLVVSVPVVAGFLLLQRYLVAGLTAGAVK
>NZ_CP029788.1|WP_110633077.1|6922945_6924304_+|beta-glucosidase
MTIDFAALPHDFLWGTATSAYQIEGAVAEDGRSPSIWDTFSHTPGKIDGDDHGDVACDHYHRWREDIALMRQLGTDAYRLSIAWPRVVPGGEGPVNPKGLDFYDELIDGLLEAGITPSVTLYHWDLPQVLQDRGGWPERATAEHFAAYAAVVAERLGDRVTHWATLNEPLCSAWIGHLEGKMAPGLTDLTAAVRASYHLLLGHGLATQAIRAAAPGAQVGIVNNLSTVHPATPRPEDVAAARRMDGHTNRWWLDPVHGRGFPEDMRELYGVDLPEKDGDLELIAAPLDWLGLNYYFPMTVADDPAGPAPHVRSVRRPGVPRTGMDWEVDATGIEDLLMRLTHEYRARRIYVTENGSSYPDVVRPDGTVDDPERQEYLTQHLAACARAARRGAPLAGYFAWSLLDNFEWAYGYDKRFGLVHVDYRTQKRTIKGSGHHYAEIIRAHRDRTARAA
>NZ_CP029788.1|WP_110633080.1|6924447_6926346_+|family-16-glycosylhydrolase
MTVRTPRTRRTPRVLLTALAALALLAAGPALTAPAAAAPTAAAAGWDTDRAAAAYAVNPAAVTASGSENGGTAPGLAFDGNGSTRWSSNFADDAWIRLDLGSTIRVDRVVLDWEAAYGKCYALEISKNGTDWTPFFTETDGKGGTVTAHTYPQEVTGRYLRLRGIQRATPYGYSLWSFRVYGGEPAPAATTRANLALNHPAYSNFYQHAGNSPAFVTDGGWPADLKADATRWSSDWNADRWVSVDLGATSTIDTVDLYWEAAYAVDYQLQVSDDNRTWRTVYQPSASEVAARRANVKSPGEATGLHDTIRLPQPATGRYVRMLGKERRSFYNPAPYTAQFGYSLYEFQVWGTGGSAAAAYPALPGEQQGTYQTTFFDDFTSAGLDRSKWRVVRTGTEMGPVNGESQAYVDSPDTIRTENGSLILRARYCKGCTQAGGTTYDFTSGRIDTHTRFDFSYGRVSARMKLPVGDGYWPAFWLLGSNVDDPSVSWPASGETDIMENIGYADWTSSALHGPGYSADGNIGARQTYPNGGRADQWHTYAVEWTPTAMRFFVDDRLVQETTRNVLESTRGQWVYDHNQYVILNLALGGAYPAGWNKVTTPYWGLPQSSVDRIAAGGVQAEVDWVRVEQKR
>NZ_CP029788.1|WP_110633083.1|6926366_6926699_-|deoxyxylulose-5-phosphate-synthase
MPPAKTSFVCLPCRASFKQPYAGAWVRRCPRCARELVHVGSAFAAPPRRDTKGWRVLSVLLHAGVRFHKSCCSGGAGYRPRTLREVRERMAYARRTGEPVARALTRPEVP
>NZ_CP029788.1|WP_110637266.1|6926862_6927261_+|hypothetical-protein
MADWIYILNPLRDVLDQEPCDKEKILGLAEEDPEAEFWLSRRNRMVPGDRVWFFFTSPDAAVAAVGEVDEEPRLDSEAGDGSYLVPVTLLTEATKALYRAPVGRDELGLGQVRSVQKVKPAALPLLLERAGL
>NZ_CP029788.1|WP_110637268.1|6927352_6928405_+|hypothetical-protein
MMLGLALGETLGAARGSVPDAGPLRAGVATQLACFTAEGVIRAQVRGNHKGICYAPGVVLHAYSRWAYLQGIAVEKMLARWQSPGDRPWPDGWLAGVPALAERRGSAPATVAALSRIDEGEKAMATPSRGAHALTRSLPVAVTGVEGVALVDALAGLTHGDPAARGAAVHAALLTRHCLNHPLPDRTPYAPFDGILGEALDAGLTALPSEARSLSEEEHDRLRAAFREAAEAPADPARLARLAPDATAPSALLGGIYAAASFPRPADLRAALAFAATAPAGDSVACVTGALLGAAHGVEALPTDLVARHELAWVLDTLARDLVLELDDSPSGSEYVQGWDPHWWNRYPGW
>NZ_CP029788.1|WP_110633086.1|6928512_6929070_+|GNAT-family-N-acetyltransferase
MQVLDFRIRPARPEDLDAARAVMLDTVYRDFGTGYVPRWHGDIVDPAAAYLTPDRHTLLVAVAPDGEVAATGALDSRGPAHPPNPRRLAERYPSGTTAQLRRVYVRPEHRRRGLARRIVRDLVAFAAADGGYRAVYLHTDPAVPGAEAFWRSLGRVVLDERAEGHGQRTVHFEVPMTVAAEAVSR

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Crispr_ID: NZ_CP029788_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_14

7013106-7013210

Orphan

Consensus_repeat	Method
GACACGCCGGTTCGAATCCGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_14

>merge|NZ_CP029788|14|7013106-7013210|CRISPRCasFinder
GACACGCCGGTTCGAATCCGGCCGTCCGGGCGCGTCCCGGGTCCCGTAGAGCAGAGGCAGACTCGCCGCCTTCTCAGGGCGGATACGCCGGTTCGAATCCGGCCG

>NZ_CP029788|14|14|7013106-7013210|CRISPRCasFinder
GACACGCCGGTTCGAATCCGGCCG	TCCGGGCGCGTCCCGGGTCCCGTAGAGCAGAGGCAGACTCGCCGCCTTCTCAGGGCG
GATACGCCGGTTCGAATCCGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110633293.1\|7017960_7019370_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226382
NZ_CP029788.1\|WP_110633270.1\|7007007_7008198_+\|glutathione-dependent-formaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|176243
NZ_CP029788.1\|WP_110633302.1\|7022927_7023704_-\|N(G),N(G)-dimethylarginine-dimethylaminohydrolase	unknown	unknown	gnl\|CDD\|224747
NZ_CP029788.1\|WP_110633286.1\|7013246_7014587_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187585
NZ_CP029788.1\|WP_110633267.1\|7005307_7005772_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP029788.1\|WP_110633272.1\|7008249_7009320_-\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|236191
NZ_CP029788.1\|WP_110633264.1\|7004371_7005127_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_CP029788.1\|WP_110633280.1\|7011713_7012505_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP029788.1\|WP_110633299.1\|7021733_7022708_-\|acyl-ACP-desaturase	unknown	unknown	gnl\|CDD\|153109
NZ_CP029788.1\|WP_110633275.1\|7009393_7010425_+\|DNA-polymerase-domain-containing-protein	unknown	unknown	gnl\|CDD\|240135
NZ_CP029788.1\|WP_110633291.1\|7016133_7017960_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|99707
NZ_CP029788.1\|WP_110633307.1\|7023884_7025513_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP029788.1\|WP_110633296.1\|7019603_7020464_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110637274.1\|7005775_7006747_-\|DUF3048-domain-containing-protein	unknown	unknown	gnl\|CDD\|378618
NZ_CP029788.1\|WP_110637275.1\|7014961_7016122_+\|ribonuclease-inhibitor	unknown	unknown	gnl\|CDD\|238064
NZ_CP029788.1\|WP_110633277.1\|7010623_7011664_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP029788.1\|WP_110633283.1\|7012720_7012966_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP029788.1\|WP_110633261.1\|7003724_7004372_-\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP029788.1\|WP_110637277.1\|7020784_7021627_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633310.1\|7025913_7026744_+\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	unknown	unknown	gnl\|CDD\|379346

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110633293.1\|7017960_7019370_-\|hypothetical-protein	gnl\|CDD\|226382	COG3864, COG3864, Uncharacterized protein conserved in bacteria [Function unknown].	5.24968e-13
NZ_CP029788.1\|WP_110633270.1\|7007007_7008198_+\|glutathione-dependent-formaldehyde-dehydrogenase	gnl\|CDD\|176243	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_CP029788.1\|WP_110633286.1\|7013246_7014587_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.32029e-12
NZ_CP029788.1\|WP_110633267.1\|7005307_7005772_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.18851e-16
NZ_CP029788.1\|WP_110633272.1\|7008249_7009320_-\|ATP-dependent-DNA-ligase	gnl\|CDD\|236191	PRK08224, ligC, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP029788.1\|WP_110633264.1\|7004371_7005127_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	1.27087e-95
NZ_CP029788.1\|WP_110633280.1\|7011713_7012505_-\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	3.25489e-29
NZ_CP029788.1\|WP_110633299.1\|7021733_7022708_-\|acyl-ACP-desaturase	gnl\|CDD\|153109	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 10 to yield oleic acid in the ACP-bound form. The enzymatic reaction requires molecular oxygen, NAD(P)H, NAD(P)H ferredoxin oxido-reductase and ferredoxin. The enzyme is active in the homodimeric form; the monomer consists mainly of alpha-helices with the catalytic diiron center buried within a four-helix bundle. Integral membrane fatty acid desaturases that introduce double bonds into fatty acid chains, acyl-CoA desaturases of animals, yeasts, and fungi, and acyl-lipid desaturases of cyanobacteria and higher plants, are distinct from soluble acyl-ACP desaturases, lack diiron centers, and are not included in this CD.	4.98261e-136
NZ_CP029788.1\|WP_110633275.1\|7009393_7010425_+\|DNA-polymerase-domain-containing-protein	gnl\|CDD\|240135	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.	8.0545e-126
NZ_CP029788.1\|WP_110633291.1\|7016133_7017960_-\|ATP-binding-protein	gnl\|CDD\|99707	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.	0.000553247
NZ_CP029788.1\|WP_110633307.1\|7023884_7025513_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	5.07879e-124
NZ_CP029788.1\|WP_110633302.1\|7022927_7023704_-\|N(G),N(G)-dimethylarginine-dimethylaminohydrolase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	5.1373e-41
NZ_CP029788.1\|WP_110637274.1\|7005775_7006747_-\|DUF3048-domain-containing-protein	gnl\|CDD\|378618	pfam11258, DUF3048, Protein of unknown function (DUF3048) N-terminal domain. Some members in this bacterial family of proteins are annotated as YerB. However currently no function is known. This entry represents the N-terminal domain.	5.56219e-39
NZ_CP029788.1\|WP_110637275.1\|7014961_7016122_+\|ribonuclease-inhibitor	gnl\|CDD\|238064	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).	1.06395e-13
NZ_CP029788.1\|WP_110633277.1\|7010623_7011664_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	8.17869e-101
NZ_CP029788.1\|WP_110633283.1\|7012720_7012966_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	5.60886e-26
NZ_CP029788.1\|WP_110633261.1\|7003724_7004372_-\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	8.14148e-126
NZ_CP029788.1\|WP_110633310.1\|7025913_7026744_+\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	gnl\|CDD\|379346	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase. This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). This protein has been characterized as catalyzing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). This enzyme has a TIM barrel fold.	1.5878e-85

>NZ_CP029788.1|WP_110633283.1|7012720_7012966_+|WhiB-family-transcriptional-regulator
MHIDTIPAPDLAWQQEALCAQTGGDFFFPEPGSSVREAKRICGLCPIRSACLEYALEHDERFGVWGGLSEKERLALRRTCS
>NZ_CP029788.1|WP_110633280.1|7011713_7012505_-|VOC-family-protein
MLTTRFVDGAPNWIDVGTSDIEGATRFYGALFGWQFVSAGPDAGGYGFFQLDGKTVAGGMQTTPEQGPPSWTVYFQSRDAQATAQAAGQAHGRVLFQPMDVMGQGHMAILADQAGVSFGIWQPGQNKGVDLAGDPGSLCWVELYTPDIAAAAAFYHSVLGLETSAVPFPGGVYTCVNPAEGGEDAMFGGIVPLADDPTETDAFWLPYFEVPDTDAVVADAEKLGGTVRVPATDIEGVGRVARLADPYGARFAVIKSAPPQQQQ
>NZ_CP029788.1|WP_110633277.1|7010623_7011664_+|LacI-family-transcriptional-regulator
MTETAPRPTLEAVAARAGVSRATVSRVVNGGDGVRPPLVERVLRAVDELGYVPNQAARSLVTRRHDAVAVVIAEPETRVFADPFFALQLRGISKELTAHDNQLVLLLTEGRDDHARVGRYLAGGHVDGALVFSLHLDDPLPGLIRRAGVPTVFGGRPGWSDDDERAAVYVDSDNRGGARDAVRHLVGLGRTRVAHITGPLDQTSAADRLAGYRDVMAGTDPGLVAEGDFTPAGGERAMRALLDRCPGLDAVFAANDLTASGALRVLRERGLRVPDDVAVIGFDDMLPLAEQTDPPLTTVRQPIEEMGRLMARLLLGSPRDGAAPADGSEPPTGVVLPTTLVRRASA
>NZ_CP029788.1|WP_110633275.1|7009393_7010425_+|DNA-polymerase-domain-containing-protein
MGDAVELEAGGRTVRLSHPDKVFFPERGFTKLDLAQYYLAVGPGILRALRDRPTTLERYPDGLAGEWFFQKRAPKNMPDWIPTAHITFPSGRSADEMCPTEEGAVVWAAQYGTLTFHPWPVRRADVDRPDELRIDLDPQPGTDYADAVRAAGELRAVLEEFGGLRGFPKTSGGRGLHVFVPIEPRWTFTQVRRAAIAVGREMERRMPDHVTIKWWKEERGEKIFVDYNQTARDRTIASAYSVRPRPHAPVSAPLRWEEVGDAHPRDFDLATMPARFAALGDVHADMDDHRYSLEALLELATKDEHDHGLGDLPYPPEYPKMPGEPKRVQPSRARKPKQAAEGD
>NZ_CP029788.1|WP_110633272.1|7008249_7009320_-|ATP-dependent-DNA-ligase
MDLPVMPPVKPMLAKSVARIPEGMQYEAKWDGFRAIVFRDGAEVELGSRTGKPLTRYFPELVAALRERVPKRCVLDGEIVIAREGHLDFDALTERIHPADSRVRTLAERTPASFVAFDLLALDDEAVLDVPLSDRRALLTRALAEVTPPVHVAPATTDIEVARSWFERFEGAGLDGVIAKPLTLRYLQDERAMFKIKHERTADVVVAGYRLHKSGPVVGSLLLGLYDDKGALQHVGVSAAFPMKQRAQLVDELEPLRMDDVAGHPWAAWSDEAAHETARLPGAPSRWSGKKDLSWVPLKPERVAEVAYDHMENGARFRHTARFRRWRPDRTPQSCTYAQLEEPVRYDLAEVLGTGG
>NZ_CP029788.1|WP_110633270.1|7007007_7008198_+|glutathione-dependent-formaldehyde-dehydrogenase
MRAVTWQGKRDVRVENVPDPKIQEPTDAVIRVTSTGLCGSDLHLYEVLTAFMTPGDILGHEPIGIVEEVGAGVPDLKAGDRVVVPFQIACGDCWMCLNGLPTQCETTQVAGEGMGAALFGYTRLYGAVPGAQAEYLRVPQAQFGPIKIPEGPPDDRFVYLSDVLPTAWQAVSYADVPEGGSVAVLGLGPIGDMACRVAQVRGAGRVFGIDLVPERLRRAKERGVETFDLRSFDSDKELVAAIRDETDGRGPDAVIDAVGTEAHGSAAAKLAQQAVSILPRKIGAPLTERFGVDRLAALYTAIDLVRRGGTLSLVGVYGGMADPLPLLTLFDKQIQIRMGQANVRRWSDEIIPYLTDEDPLGVDDFATHRVPLEEAPHAYEMFQRKQEGAVKVLMKP
>NZ_CP029788.1|WP_110637274.1|7005775_7006747_-|DUF3048-domain-containing-protein
MRRGTRTRRAERARAAALLAAAVTMALAAACTAPGGTHDDGRAPDPSPSTRHHGAVLAVKIDNARAARPQTGLNAADIVYAEQVEGGLSRLMAVYATDMPKAVGPVRSARESDLELLRQFERPTLAFSGAQKKLLPLIDAAPLRPETPGKVSGAFYRGTDRPAPHNLYLRPDRLLPTAPGRDALTTGFRYGARPAGGTAATSRTVRFPAATFTFTWSDALHGYRVSMDGTPTVTTDDGPVAPPTVVVQYVKVHPSAFHDFLGNHTPYTETVGSGRAEVLRDGRAYDVTWERPTPADGTRFTTRDGTPVNFAEGQVWVVFASAS
>NZ_CP029788.1|WP_110633267.1|7005307_7005772_+|winged-helix-DNA-binding-protein
MAAVDLSTHPGHLARRLQQAHYLLWTTMVSEEITSPQFAVLNALVAEPGLDQRTVGERVGLDRSTIAEVISRLTRRGLLDKVRDPQDGRRSLLRLTDEGQRTHRKLAVRTARMNQVFLAPLSAEEQAVFLELIRRVSDAAEGLRNPAEPLVTQG
>NZ_CP029788.1|WP_110633264.1|7004371_7005127_-|CoA-transferase-subunit-A
MDKVVATAPEAVADVPEGASLAVGGFGLSGVPNVLIQALYERGVGGLSVVSNNCGALETGLAVLLAAGRITRVTGSYIGGNKEFARQYLGGELELELIPQGTLAERLRAGGAGIPAFYTPAGVGTQVAEGGLPWRYDGSGGVALASPPKEVREFDGVEYVLERGIRTDYALVRAAKGDRHGNLVFSKSSRNFNPLAAMAGRITIAEVEELVEPGGLDPDQVHLPGIFVQRVVALTAEQAADKKIEQRTVSS
>NZ_CP029788.1|WP_110633261.1|7003724_7004372_-|CoA-transferase-subunit-B
MAWTREQMAARAARELQDGQYVNLGIGLPTLIPNHLPPGVEVVLESENGILGTGPYPTEDAVDPDLINAGKETVTVLPGASFFDSALSFAMIRGGHIDVAVLGAMQVSARGDLANWAVPGKLVTGIGGAMDLVHGARTVIVVMTHTAKDGSPKILDTCTLPLTGRTCVNRIITDLGVLDVTDDGLVLVETAPGVTAEEITARTAAKVRVPEETAA
>NZ_CP029788.1|WP_110633286.1|7013246_7014587_+|SDR-family-NAD(P)-dependent-oxidoreductase
MGEGTGTAISEAELAAFHAVVGKLRALPVDDPVRLRAEQVAASFARDGRLKRRKARGAEVSASDAATMAATATGALDRREDAPLAEPGSGGVYRKSRHCYVCKSAYRQVDTFYHRLCPDCAADNRRRRALSTDLTGRRALLTGGRVKIGFQLALMMLRDGAELLVTSRFPHDTVRRFHAVPGSEAWRDRLTVLAVDLRDPRQVLGLCEELRGEGRPLDILVNNAAQTVRRPPESYALLAAGEYEALPEGARRAPGFTPMRMLSGSAAALPAALREADEAGLLPDPSPENSWSARLGALDPAEVLETQLVNALAPALLCDRLLPLLLASPHPRRYVVNVTAVEGRFAVRNKTAGHPHTNMAKAALNMLTRTSAAELAEQGVHMCAVDTGWITDENPAPKKARMAGAGFRTPLDVVDGAARVYDPIVRGEAGAPLSGVFLKDYQEAEW
>NZ_CP029788.1|WP_110637275.1|7014961_7016122_+|ribonuclease-inhibitor
MGFAGVPVVVPRPLGELEPLLDWLRAGRPAGERLDFAAGTVLPDGRLDLCKQALGARGAGLVAEALGQGPSPVRHLLLGTDALGDDGAEAVAGSAVETLYLGCNGITAGGACRIADRLRASPQVVTGVWLKRNPLGSAAGRAAAELIESARTLRTLDLVQTGLDPAGAVVLADALLAAAGNGRRIARLYLGGNPLGEAGADALGAVLAAGAVDEVYVSAAQLGDAGALRLADALDRAPHGRLTRLSVASNGIGPAAAARLVTAATAAGVGLLDLGRVRAAAVLAAADNRVDLAAAETIAAALAGAEHRLAHLVLSHTGMRSREAHRLLDTAPRAATPTRFVLGPGIASSIKRRLAAFSAHIPAPAVPADVAAVRSVHRTAPPPRQP
>NZ_CP029788.1|WP_110633291.1|7016133_7017960_-|ATP-binding-protein
MSTQTEQLTGLADRRRPDGPSRLEEFIDAMIDLGQTGQIFGEHGIGKTATFFSHIARAHPDTALVYVPAANLTPDDLLVNAPVRDPETGELVLRQLVMSQLKPGRPFVLLIDDSLQAGDTIQSQLMQVACNWTLGEHDLRELGCVGVFLTDNESLAETSARRGDLALLDRMVTMRITANDTSWRRHLAARYRPWDLTEVFALWASLPHGLRELLSPRTLDHILANAREGFPLRWGLPLVDGERLRLAEPGPDGRPGQNRTAEILDRIARAVGAPNPPRIADPVRQVVRAALRNRWTVLLQGPPGCGKTELVRETVREGLGREALYFSLPVTNVEDLCAPVPAPDGTLDNLLAAKFTGPEPKAIVWDEYNRPKDKAAFAKLMEITQEWSLAGRRIENLRAQIAVQNPPYHLGRKLLVSRNNIAQATRFTASLEVEPEDIPANEWLIDRYGADAETVLEWWKHDIDEEGRAWITKRTLERLIKLHRRGLPLEMATVYLGDGEYAPVPLTALIDRLRGRPVTGLRELARDVDAWEARLRRAAERSSEGGADSDVVHQILANAELSQLKKHRAAVVRLVALLPAKLRATYLVGASEKQQRFWTEVFMTMRKR
>NZ_CP029788.1|WP_110633293.1|7017960_7019370_-|hypothetical-protein
MTYGDGGRRLRAPVVELTDLRALERYRPADPGVVAEARRLKEAALLDFGLTESAVASWLYAKCRHQIPTTAVDTAAVVASGDGTCLLLYNPGFFVGLGLDGVKFVLFHEARHLVHRHLLAEPELREDPVFELAAEVSVNHVALIRLEREELPLLDGRPTGVDPRRVYEAYTADLTAHGLQPVPYETFTETDMRVYGELKRMHHPPVPDPRLCLHLGEDGVPLDQRTVDEITSSALLNSLLAARRGHAGAERELLDLMGRTEEGSARAARLWGNLGAGLLRGETARTRTVDWWQRWLVDVLGSKLRDGERLVYPKKRGALLAALGQDPMLARRGPVREKVLVIAYDTSGSMPDHVVRWLTDLVGRIDGVEAHWLSFDAVVMPFRPGERVYGGGGTSFQAVADYVEGRTEVGGRRLDVTPDAVVVLTDGYAPPISPAEPEKWIWLITQGGSEWPETHTPAMACHRVTTGSR
>NZ_CP029788.1|WP_110633296.1|7019603_7020464_-|hypothetical-protein
MALPSSVWRAPVDALPRHARSDAYVASIGADARLHPDFGSGLDDGRPFGIPVTVTDGNVPEAEVAFDYADESDPAGYRIPDDARVENGPTSDGDRHVVVFDRARCRSYELFDAHLQSSGRWHAGSGAVFDLRSTALRPDGWTSADAAGLPILPLLVRYDEVASGAVRHALRITVPRSDRSHVWPARHDAGAADDPDLPPMGLRLRLKQSVDTSGLPPQAKVVAEALKRYGAVVADNGSAWFVSGDQDERWDNEQLAALKTFKGSDFEAVDSSSLRTDPDSSAARTP
>NZ_CP029788.1|WP_110637277.1|7020784_7021627_-|hypothetical-protein
MSDTSTAERAAGFLLGLTDEDTAARVRARTGLPGPEDRAETRLRIRRTLTWARAGLPGSVTLWALQEDDPELNAVLWQYAVTDPGLRRAMARGVPFGPGRTEQLPVNEAMAAEEPEIPESYLRLGLVGALRAVDSLGRARSAASMVLTEEDWWTVTVADDEQPLPGYARWALSVRPDCPPELRAQFGSHPKFTHRLRQAGVLDGPAEYATAHGPAVRVLDVLSLGHVLFPARMRAAEDALRPLVHEHLGDHEEAWAILAQLMGTFHGTAPELIATAGAIA
>NZ_CP029788.1|WP_110633299.1|7021733_7022708_-|acyl-ACP-desaturase
MTITSPHLGSPAVWTDARLLYALEEVVEQELNRHLKVAKDWMPHEYVPWSDGRNFPGFFDDGEAWDKEQSKVTEVGRIALVVNLLTEDNLPSYHHEIATLFGRDGAWGTWVHRWTAEEGRHGIVMRDYLLASRAVDPDKLERFRMSHMSEGFESDNRHSMLHSIAYVAFQELATRISHRNTGHQSGDPVCDRMLARIATDENLHMVFYRNLLKAAFELAPDLTMQAVRDVVVNFRMPGHGIPGFERAAAQMAIGEVYNLRIHHDDVLQPVLRFLKVLEIDGLGPEGLQAQEELGMFLGGLDAEASKFDERLAARKARMAARGRI
>NZ_CP029788.1|WP_110633302.1|7022927_7023704_-|N(G),N(G)-dimethylarginine-dimethylaminohydrolase
MPSKKALVRRPSPRLAEGLVTHIEREKVDVELAVEQWEAYVAALSAHGWETIEVEPADDCPDSVFVEDTVVMYKNVALITRPGAEARRPETAGVEEAVAALGCSVNWIWEPGTLDGGDVLKVGDTIYVGRGGRTNPAGVQQLRAAFEPLGARVVAVPVSKVLHLKSAVTALPDGTVIGHIPKVDRPALFPRFLSVPEESGAHVVLLGGSTLLMAASAPRTAELLTDLGFEVVTVDIGEFEKLEGCVTCLSVRMRELYA
>NZ_CP029788.1|WP_110633307.1|7023884_7025513_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MTMSITCTSLSFAWPDGTVVFDGLDASFGPGRTGLVGVNGSGKSTLLKLIAGELAPADGTVRVAGEVGWLPQNVTLDTALRVDEALGIAARRAALHAIEAGDVSEEHFETVGDDWDVEERALATLGELGLGHIDLDRTIGEVSGGESVLLRLAALLLRRPDVLLLDEPTNNLDLYARRRLYAAVEAYSGVLVVVSHDRELLDLVDRIADLRGGEVTWYGGNYSDYEETLAVEQEAAERMVRVAEADLKKQKRELVEARTKLAARTRYANKMYENKREPRAVMKLRKRAAQVSAGKHRILHEERLAEAKERLDEAVEAVRDDDEIRVELPYTAVPPGRGVLTLQDLHLAYGARVEGGLDLRGPERIALIGRNGAGKTTLLRTIAGELAPVSGEVAAHVPLRFLPQRLDVLDDELTVAENVARFAPDAGNNRVRARLARFLFRGARADQQAGTLSGGERFRAALAALMLAEPAPQLLMLDEPTNNLDMASVRQLTTALESYQGALLVASHDLAFLESIGITRWLVLEEGVLKEATEEHLGRATA
>NZ_CP029788.1|WP_110633310.1|7025913_7026744_+|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein
MTTPNTLRDRALAFHALHVPGRPLVLPNAWDLASARLVEDAGAAAVATTSAGLAWALGAADGDRVDRGRALAVVADIAAAVRVPVSADIESGYAADADGVVETVRAVLAAGAVGVNIEDALHGGGGLRPVAEQAERIAAARAAADGAGVPLFVNARIDTFLQGAGGVDETLERAAAFRAAGADGVFVPGVAEPGTVKLLVDGVDAPLNVMAGPGAPAVAELAALGVARVSVGSGIAQAVHALVHRAARELLDAGTYGTLAGGLDYGRLNGLLSVEG

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Crispr_ID: NZ_CP029788_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_16

7239664-7239744

Orphan

Consensus_repeat	Method
TCGACTACCTCGACGTGTCGTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029788_16

>merge|NZ_CP029788|16|7239664-7239744|CRISPRCasFinder
TCGACTACCTCGACGTGTCGTACTGAGCGACATGTCGTACCGATCCTCAGGACGACATTCGACCACCTCGACGTGTCGTAC

>NZ_CP029788|16|16|7239664-7239744|CRISPRCasFinder
TCGACTACCTCGACGTGTCGTAC	TGAGCGACATGTCGTACCGATCCTCAGGACGACAT
TCGACCACCTCGACGTGTCGTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110633798.1\|7239750_7241661_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226418
NZ_CP029788.1\|WP_110633806.1\|7250579_7251779_+\|spore-photoproduct-lyase-family-protein	unknown	unknown	gnl\|CDD\|188401
NZ_CP029788.1\|WP_110633787.1\|7232011_7233277_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110637314.1\|7234144_7235044_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP029788.1\|WP_110633784.1\|7231231_7231972_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP029788.1\|WP_110637316.1\|7241954_7244450_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP029788.1\|WP_110637312.1\|7233376_7234096_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187585
NZ_CP029788.1\|WP_110633819.1\|7256973_7257564_-\|hemerythrin-domain-containing-protein	unknown	unknown	gnl\|CDD\|213983
NZ_CP029788.1\|WP_110633800.1\|7244547_7248822_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP029788.1\|WP_110633813.1\|7254132_7255689_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP029788.1\|WP_110633793.1\|7238460_7239078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633790.1\|7237402_7238227_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP029788.1\|WP_110633770.1\|7227997_7228861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633778.1\|7229765_7230020_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633809.1\|7251794_7253987_-\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP029788.1\|WP_110633781.1\|7230368_7231127_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236205
NZ_CP029788.1\|WP_110633816.1\|7255881_7256889_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP029788.1\|WP_110633803.1\|7249426_7249900_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633822.1\|7257575_7258775_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633774.1\|7228872_7229769_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110633781.1\|7230368_7231127_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236205	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein.	1.33701e-158
NZ_CP029788.1\|WP_110637312.1\|7233376_7234096_+\|SDR-family-oxidoreductase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.51673e-87
NZ_CP029788.1\|WP_110633806.1\|7250579_7251779_+\|spore-photoproduct-lyase-family-protein	gnl\|CDD\|188401	TIGR03886, hypothetical_protein_SlinDRAFT_56750, spore photoproduct lyase family protein. This uncharacterized radical SAM domain protein occurs rarely and sporadically in species that include select Alphaproteobacteria and Actinobacteria, and in Deinococcus deserti VCD115. It is a distant but full-length homolog to the Bacillus subtilis spore photoproduct lyase (spl), which monomerizes thymine dimers created as DNA damage by uv radiation.	0
NZ_CP029788.1\|WP_110637314.1\|7234144_7235044_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.11266e-11
NZ_CP029788.1\|WP_110633798.1\|7239750_7241661_-\|hypothetical-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	1.26042e-09
NZ_CP029788.1\|WP_110637316.1\|7241954_7244450_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	8.46257e-44
NZ_CP029788.1\|WP_110633784.1\|7231231_7231972_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.23389e-67
NZ_CP029788.1\|WP_110633819.1\|7256973_7257564_-\|hemerythrin-domain-containing-protein	gnl\|CDD\|213983	cd12108, Hr-like, Hemerythrin-like domain. Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis.	1.15548e-10
NZ_CP029788.1\|WP_110633800.1\|7244547_7248822_-\|HAMP-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.8584e-59
NZ_CP029788.1\|WP_110633813.1\|7254132_7255689_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP029788.1\|WP_110633790.1\|7237402_7238227_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.05562e-16
NZ_CP029788.1\|WP_110633816.1\|7255881_7256889_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.03308e-22
NZ_CP029788.1\|WP_110633809.1\|7251794_7253987_-\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP029788.1\|WP_110633774.1\|7228872_7229769_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	6.17221e-08

>NZ_CP029788.1|WP_110633793.1|7238460_7239078_+|hypothetical-protein
MTDAGPPVRETGAVFERVLDEALDCRQIRDALDRAGGALSREQLRSRARQARPAITAAAAAEYQEYLRSTCAEEASDDVPPPPAVRASLLFAGAAALLLPTGYGLSAVAGHPYIGGGLVTAGLIAGSLAVGAGAGDLLWQRLTRTTARPGDAAPRDPDAPRATPPAGAAGEAARAREAWELALRERGVVPFLLGRLEEAATGRRL
>NZ_CP029788.1|WP_110633790.1|7237402_7238227_-|pentapeptide-repeat-containing-protein
MEIQNPGSGGREQLLAACGDCFGLCCVALPFARSADFAADKPAGKPCGNLQADFRCGIHARLRDEGYQGCTVFDCFGAGQKVSQVTFGGTDWRAAPQSAGTMFAVFPVMRQLHELLWYVDEALRLAAARTVHRDLRRAYDRIDALTRRSAEEVLALDVNALRGEVNELLLRASELARARIPGRKRNHRGADLMGARLAGADLRGASLRGALLVAADLSGADLRGADLIGADLRDADLSGADLTDGLFVTQAQLNAARGTASTRLPAGLERPGHW
>NZ_CP029788.1|WP_110637314.1|7234144_7235044_-|flippase-like-domain-containing-protein
MVPLLLVTVVAVRHRSVLAEGLARLRSAEWPWLVAAVGATCLTWVAAACTRQGAVVERLPWRRLLATQFAAGAANHLLPTGLGASAVNLRFLTVCGVPLARSSAALALYLLAECVGRLSLMAALLLVFPGALRFGALLPEDVFGPLLLAGSAVALAATTALVVVRRLRSAVCGFLRTALAEARAVHARPARALALWGGALAFPALQATALVLVGRALGLAVPPGHVAVAYLAATVAVALVPTPGGVGSVEAALVVALVAAGGPAAVATAVVLAYRILTVWLPLVPGALTLAALVRMKVI
>NZ_CP029788.1|WP_110637312.1|7233376_7234096_+|SDR-family-oxidoreductase
MSPHAPHTPPTPVALVTGANRGIGREVARQLAGLGHHVLLGSRDPRKGEQAAAAIDPGGERVRAVRLDVSDAASVTAMAERIARETGRVDVVVNNAAILYDSWARARAADLAEVQQALDTNLFGAWRVTQALLPLLERSPHPRVVNVSSEAGSLASMSGGTPAYSVSKAALNALTRLLAGELRAQRVLVNAVCPGWTDTDMGGGGRPVAEGAAGVVWAATLPDDGPTGGFFRDGKPVPW
>NZ_CP029788.1|WP_110633787.1|7232011_7233277_-|hypothetical-protein
MGDVGKIDQDAVLRARATLLASDTPSRARQVEAYRVLAEVSPESYLPKLAKALVSYGYEPEFRDRPEARLALNAEAVAVARRIDPDDPRRTEVLVDTLRSWQFELFRAGRRAEALAVCGEMAEVGRDGFARGQVTSPEYGAARLAVVLAEEGRHGEAAELLGRFAARARAESPWSAFWDGLAHVAELEAAGRRGEALDAFADLVAADCAELESGRTSLAIPVWLLVHHSRMLDAAGRPAEARAARARALGLLTELDATGERRTWGNMPAWWVTLLALSGRAAEPGYPAPAFGRHFTDWSPDLRQTYVDGIAPLEAEVAALRRAADADPDGPHLPELLERQRRLTVRSAVHREHRTHSVLKPLRPLFAEGVALARRLAARADPRRGRDALARALTDRAMFLLAGRQYGEAYDDFREVVALLD
>NZ_CP029788.1|WP_110633784.1|7231231_7231972_-|SDR-family-oxidoreductase
MSMDTADRPVALVTGSTSGIGEAVARRFAADGMRVVVHSRRSAAAGRALAEELGGTYLRADLEVEDEARGLMEAALDRYGRLDVLVNNAGISRPIPHADLAAATPADWRRLLEVNLIAPWVLCTAALPALRTAPGGGSIVNITSHAGVRPKGSSVPYAASKAALNHVTLLLAAALGPDVRVNAVAPGLVDTPMTKDWAGVHDLWRERAPMRRPARPEDVADLVASVVGSAYLTGEVIVLDGGLHLT
>NZ_CP029788.1|WP_110633781.1|7230368_7231127_-|crotonase/enoyl-CoA-hydratase-family-protein
MSVRVERRGPVTTVVLSRPEVRNAVDGPTAAELAAAFREFEADDSARAAVLWGEGGTFCAGADLKAMGGEHGNRVAEDGDGPMGPTRLRLSKPVIAAVAGHAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGTSRALDLILTGRPVPAREALEMGLANRVVAPGTARAAAEELAATLAAFPQGCLRSDRASVLDQEGLSEEEALRQELRYGARVLPEALEGAARFADGAGRHGSFG
>NZ_CP029788.1|WP_110633778.1|7229765_7230020_-|hypothetical-protein
MTSKKVLTVAVLATVLTWSTVMTVLGQVAAVAALLPSLGLLVQQIVQALTAPDGSRPADGTPAPDGRPPAGAGPVAAGGQEPPR
>NZ_CP029788.1|WP_110633774.1|7228872_7229769_-|sigma-70-family-RNA-polymerase-sigma-factor
MIWSPDADQPPPPDTFGPGGRRGRKPAPISDTAGLSHRAWLEPVRSLLFASGLTLNDLVDRSGYSKTRISELLRGNGYYPAWEITFSVIRALGLPGRPMLRLWTAAAREARKEPAWIRHSIEQVALQPERPPLAHRAFTEAMTRPYTDYARAFLLTEERARAAVWETFDILWLCWSEAATSADIRRYAWLLLRSRVMARAHRRQDGGPDLRAAVFSTAEVHDSVPGHVVVLSELVDLFDAIGRLPHDQLDVAVLRYLCGMPLDAVPDVLGLTPAIAHAVDHHARATLERLLSSHSPRE
>NZ_CP029788.1|WP_110633770.1|7227997_7228861_-|hypothetical-protein
MTSVDALLARARLHPGPDVPPDTVAYEDCAYFDLTADPATAPAGEPAGDDTAAEQLDRLCEVVVTAVAPGTLEFLTDQLPEPPAAWLLGCALHLAGVADGARFWWQYAAGAGHSPAAYCLSLHHHARGEEHAAAFWYDQTGLDEAAEADTFPVAGVCPSLSGFRFDASLPTVLRILSHLAAPGRRRLPHRADAVTNYVARAVAHGYRRHPGVEIPVPEPRFADRISFLLGTDPPWARRMARVFHRPALPSRAQSAGSAREGAGKGRTAAEAADAAAASTVASWGRPA
>NZ_CP029788.1|WP_110633798.1|7239750_7241661_-|hypothetical-protein
MIGRERETAAVAGLLAAHRLVTVTGPPGAGKSTVAAAAVAASVSAGWECLVQVRRQGSAPGRPGDLAADLVTRLTGAPPAGPVAPERAARALPDAPTLLWLDDVDPVHDECVRLVQQVLLRAPRTGVLVTSRRALGLDAERTVRLSGLRCRPAPEDGEGPAPAVELFLRHAPTGHGAPDPESVAEVCRLVEGLPLAVELAAEQTAQLPVRELVRLLRLSQTWLAGPRRAHRRHRSLRDAAGSAWMLCDTAVRTVWARASLFAGSFTETSAVHLCAGGAVEPAQVPSCLVQLAAHGVLEVRGEVGAVREHRYRMTRLAREFGAERLTARGEFAAAALRRSQRWGQVAAEAESLWERGAQSRAVRLVSEEYEELAALFAHACTEPSLAPAALQTGLRLWFWWVACDRAEEGADRLLALLPHCDGSPLLARGQWLAAWLSARTAPETARALLDDAWWASVLAGDTATVGRIAHVQGVLALQEGDARAAAGHFQLAADTIPAHAPGGPPATLSLAALALAQLRYAPAAARRSAHRALAQAGLRQDAWVCQVARYAQACTDHGLGRPGRAWQRARRALADTDDGLPATHGTSALRQLLADIETGSPARLELPAALVPHTAPLPAPRPSDREIRLGRGPAPA
>NZ_CP029788.1|WP_110637316.1|7241954_7244450_-|SpoIIE-family-protein-phosphatase
MSDQPAEPRELEASPAEVEHAGSGTGPAEVEYAGTGTGPLPAGPGEPAGASATSPVGRLAATVERLRQEVRSAQAEAEGRALIELAKGILVERLGCGPAQAARQLAELTDQAGVTLLEFAVDVINQAARDRLSEVTDAFLAATSGSRSADGGEAAVRLRAAESGALAAHDTQAVADSLLEHALRPLGAVAVAVWAAGSDGSLTLAGSAGFAPAEASRWRYVPPDVVTVARRGLTERSGQWIESLTETGLPTIGRHLYPDGGRAAVPAGTGGRIHGVLEIAWPTAVEPQPPQILRQVEALAELCAHTLENFTPGPDAVQEPRLVPDVAELMDLADGLHDPALVLVPHTDPAGQLVDFRIQHVNTRFLDPAGRPRAVINGELLLEAYPMTAGDSELFQRIERVYATGEPFRAQRMRLTALVGQVPLSAVADISISRHGASVLLIWRIEDETARLASLLQHAQRLGRIGGFEEDLLTGGITWNSQMYDLFGRPDTSLPVPLEDLPAHAHRDDAVIIGRFLRTLLHHRRPASAAFRLQRPDGVTRHVRVVAEPVQDAAGRLFVVRGAYQDISAQHWTEVALAATRDQLAHTEQQAAERNRLTLQLQHAIMPPAQAPLQAPGLEVAVRYRPAEAEQLVGGDWYDAVVLPSGQVLLCVGDVAGHGIEAATSMVVLRNALRGLAVTGAGPGQLLSWLNIVAHHLNGAVTATAVCGLYDPDRRVLRWARAGHLPPVLVRSGEAAPLPLVKGILLGALPDVVYEEAEELLAPEDTLLMYTDGLVERRDRSVEESVTHLVTTARSAPKTLDQQLDRLLTYGRSDTDDDTCLVGVRVMKEAS
>NZ_CP029788.1|WP_110633800.1|7244547_7248822_-|HAMP-domain-containing-protein
MASKNSAVVETVPGDEELRRLLDGLTAVRDGDFGTRLPDDGDGLMGDIAKVFNGMVDQLSVFTSEVTRVAREVGTEGTLGGQAQVPGVSGTWADLTDSVNAMAGNLTTQVRDIAQVATAVAKGDLSQKIDVPARGEILQLKETVNTMVDQLSAFADEVTRVAREVGSEGRLGGQAKVPGVAGVWRDLTDSVNLMAGNLTSQVRNVAQVTTAVAKGDLSQKITVDARGEILELKNTINTMVDQLSAFADEVTRVAREVGTEGRLGGQADVKGVRGTWRDLTDSVNFMAGNLTSQVRNVAQVATAVAEGDLSQKITVDARGEILELKNTINTMVDQLSAFADEVTRVAREVGTEGRLGGQAHVRGVSGTWKDLTDNVNVMASNLTSQVRSIAQVATAVARGDLSQKITVEAKGEVAALADAINTMVDTLSAFADEVTRVAREVGTEGRLGGQAQVPNVAGTWKDLTDNVNSMANNLTGQVRNIALVTTAVARGDLSKKIDVDARGEILELKTTINTMVDQLSAFADEVTRVAREVGTEGRLGGQAEVEGVSGTWKRLTENVNELAGNLTRQVRAIAEVASAVAEGDLTRSINVEASGEVAELKDNINSMVESLRETTRANQEQDWLKTNLARIAGLMQGHRDLPVVAELIMDELVPLVSAQYGAFYLMEDGEQGAELRLVGSYGRPADDPRPDPIPVGRSLVGQAARSRRTIAVDQLPADYVTISSGLGHTVPTTLLLLPILFEDQVLGVIELASITPFTPIHQDLLEQLRETIGVNVNTIVANARTDELLGESQRLTAELQVRSAELQAQQEELQRSNAELEEKASLLAAQNRDIEAKNLQIEQARQELEARAQQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPQRNLTQKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLRRLIDYVEATFRPMTTQKGLDFAVTTAAGAPRDLLTDDSRLRQVLRNLLSNAVKFTEQGQVELLIEPAADEEVPAAVVKGGSVVAFRVKDTGIGIQEQQLEAIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSAPGRGSTFTLYLPVARPDFETPVGRLPEQHAEPAVVQQAVEAPAALPAAAERAGRPRRLLVVEERPRGLLTLVAESVVADVARHREEDVLPWPDVELITAVSAQEAAGALAAEPCHCVVLDLDLPDGEAAQFLRALGGDSALADVPVLVHSSLRPDAAREESLRARADHAAVEFVAGLDELRERIALHLSAEEPGEVLSLARTEEPQQLTSHVVDTSLAGRTVLVVDDDARNLFALSGILELYGLRVLHAEDGRKGIDTLLANSDVSLVLMDVMMPEMDGYTATAEIRKMPQYADLPVVAVTAKAMPGDREKSLASGANDYVTKPVDTQELLACLRRWLAP
>NZ_CP029788.1|WP_110633803.1|7249426_7249900_-|hypothetical-protein
MTEANKGTDQKNGTAKRTTASRTRSAAGKATRQAERTARQSADGAAKGGSAVADGASKAKSAAAAGAADAARKTAGAAEAATRKLEAGRKAAAAATGQVTVAARTAWTALAHRKLLAMGVGAGATALTAASYAAGRRSGRAAQGFQGPLTRLTGGRI
>NZ_CP029788.1|WP_110633806.1|7250579_7251779_+|spore-photoproduct-lyase-family-protein
MPHPAGPSDDDGAATLFGLEALGAPGAPATGAPAEPSAGPAFRTGDTARRLLPVREIYAEPAAAASPRGRQIRERFPRARLIEVDSHWNIPGLHGNEGNVERWVRVKGETLVLGERKTLTTRPNGRSADWIAPGPSNGCAMACAYCYVPRRKGYANPVTVFTNIDTIIAHLGRHIARQGRKPAPNQCDDTAWVYDIGENGDCSVDALICDNTADLVHAFRQWPTAKASFATKFVNPDLLAYDPRGRTRIRFSVMPADDSRLLDVRTSPVAERVAAAADFVDAGYEVHFNLSPVVLRPGWQAAWGELLEHLDDVLPARVKEQSAAEVIMLTHNRDLHEVNLGWHPKAEDALWRPALQQSKRSENGALNVRYRNQVKAEALHDLRGLIAARAPWLRIRYAF
>NZ_CP029788.1|WP_110633809.1|7251794_7253987_-|catalase/peroxidase-HPI
MSGSESENPAIPSPTPTPTRRPRTNRDWWPNQLDLQVLHQHSPLSDPLGEDFDYAKEFATLDVEALKRDVFEVMTSSQDWWPADYGHYGPLFIRMSWHAAGTYRIADGRGGGGSGAQRFAPLNSWPDNASLDKARRLLWPVKQKYGRKISWADLLVFAGNCAMESMGFETFGFGFGREDIWEPEEIFWGPEDTWLGDERYSGDRELTGPFAAVQMGLIYVNPEGPNGNPDPMAAARDIRETFGRMAMNDEETVALIVGGHTFGKCHGAVDPSYIGPEPEAAPIEQQGLGWRNTYGSGKGPDALTSGLEGAWTTAPTTWDNGYLDNLYGYEWELTRSPAGAHQWTPTDPAARDTVPDAHDPSKRHAPMMLTTDLALKVDPVYGPITKRFHEHPEELALAFAKAWYKLLHRDMGPVSRYLGPWVPEPQLWQDPVPAVDHDLVGAEDIADLKSRILATGLSVPQLVTTAWASASSFRGTDKRGGANGARIRLAPQKDWELNNLPEVTEVLRALEQIQQDFNASQTGGTRISLADLIVLGGCAAVERAARNAGYDITVPFAPGRTDASQEQTDAETFAVLEPKADAFRNHLPAGEKLSPETLMLDRANLLTLTAPEMTVLIGGMRVLNTGFKGSPHGLLTHRPESLTTDFFVNLLDMGTEWKASATDENVFEGRDRATGEVKWTATAVDLVFGAHAQLRALSEVYACRDSGEKFVRDFVAAWNKVMNLDRFDLA
>NZ_CP029788.1|WP_110633813.1|7254132_7255689_-|choline-dehydrogenase
MSTYDYVIVGAGSAGCVLAARLSEDPEVRVALIEAGGPDTAQEIHVPAAFPQLFKSALDWDLDSEPEPGIGNRRAYLPRGRVFGGCSSINAMIYIRGNRADYDGWAAAGADGWSYDEVLPYFKRSEGNERGEDEFHGADGPLTVSDGRSEHPLASAFVQAAVQAGHKANDDFNGATQFGVGRYQLTQRGGLRCSAAVAYLHPALERPNLTVLSFALAHRVVIEGGRATGVEVERGGAVEVVRAEREVILSAGAYESPKLLMLSGIGPAATLSAFGIDVVRDLPVGEGLQDHYMTLLNFRTDVESLLTAATPENAALLQNEGRGHLTSNIGETGGFFRSRDDLTAPDLQFHAAPVLFHQEGLGAAAEHGFSFGPCVLAPAGRGAVTLRSPRPDAAPRITHNYLVAPEDQEVIVAGLRVALEIAAQPAVTDLATGPYLVPESDADADLLAWARRHGQTLYHPTSTCAIGSVVDPELRVYGVPGLRVVDASVFPTVPRGNTNAPTVMAAEKAADLITGAGR
>NZ_CP029788.1|WP_110633816.1|7255881_7256889_-|LysR-family-transcriptional-regulator
MDLDLALVRAFVATAGTLHFGRAAEELGTSQQALSKRVARLEEALGVRLFERRGGVRLSGAGERFLPAAREALAAGERAVASVTGAGPVVRIDTWGHLYAPMRTVAEAVQALGRVGEVPSAGRRGPGAVRWEPAPGRDWPSVAQALLRGDTDLGFGRVHPLPDGRDAGLTQRLVRLEPVDVVVGPSHPLAGAEALRPAGLRGSVLWCPAELNRLDFLRRFADEFGIARRHDGPNLGLDHLVRHLRTDREGFTLFPADAPLPDHTDVRRVPLVGPTPLYAWSLTWRESSRHPLLDTLLRGFTETGRARRWLEYDPRRDWLPDSDRPKLAVDRTPAR
>NZ_CP029788.1|WP_110633819.1|7256973_7257564_-|hemerythrin-domain-containing-protein
MSDLHTPQAGDDQLPDIDVVGLLMRQHGDIRNLFDEVERSEGEERRDAFRRLVRLLAVHETAEEEVVHPFVRSAVDGGAQIVEERLAEEKSAKETLSALDDMDTDDPKFLPMLMRLRTDVQEHARAEERYEFSHIRRSTDVTNLAAMAKAVKAAEAMAPTRPHPGVESATANVALGPVAALMDRTKDAVRKAMGSG
>NZ_CP029788.1|WP_110633822.1|7257575_7258775_-|hypothetical-protein
MTFNPLEQRGIPLDRQLRNWRELNVQPIDPDRCDPYTRCRIITMNGIEVEAILFSHQLARNTVDPEVKRQLARTRYIEAQQQKVVNWLLPGVSSVLETTIAYEQVAVDLTAWVARMEPDPYLKQAYQFGVLEDFDHLYRYANLYEMIEHRKAESIVDNLTEVMPGRPTRYHHRDAYDNVRDPYDKTATDPLSKLHALTIMSAEQQTMNFYMNTGPTYMEPIARQLYQEIGLIEEEHVTHYESLVDPGETWWEQLVNHEYNECYLYYSFMEQESDPRVKSVWELHLNMELEHLHTACDLMRRHDGRDPQEVLAPELPNVLTFEPNKQYLRELLDTQMDLTTLGAGYVREAHERFEKMQEQIHGGEAPPSDRVMTEHDEMFGREYRVQTEGEHPDPAQREK

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Crispr_ID: NZ_CP029788_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029788_15

7237523-7237635

Orphan

Consensus_repeat	Method
CGCCCCGCGCAGGTCCGCCCCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP029788_15

>merge|NZ_CP029788|15|7237523-7237635|CRISPRCasFinder
GGCGTCCCGCAGGTCCGCGCCGATGAGGTCCGCCCCGCGCAGGTCCGCCCCGGACAGATCGGCCGCGACGAGCAGCGCGCCCCGCAGACTCGCCCCGCGCAGATCCGCCCCGG

>NZ_CP029788|15|15|7237523-7237635|CRISPRCasFinder
GGCGTCCCGCAGGTCCGCGCCGA	TGAGGTCCGCCCCGCGCAGGTC
CGCCCCGGACAGATCGGCCGCGA	CGAGCAGCGCGCCCCGCAGACT
CGCCCCGCGCAGATCCGCCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029788.1\|WP_110633781.1\|7230368_7231127_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236205
NZ_CP029788.1\|WP_110633798.1\|7239750_7241661_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226418
NZ_CP029788.1\|WP_110633787.1\|7232011_7233277_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110637314.1\|7234144_7235044_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP029788.1\|WP_110633784.1\|7231231_7231972_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP029788.1\|WP_110637316.1\|7241954_7244450_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP029788.1\|WP_110633796.1\|7239131_7239689_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237512
NZ_CP029788.1\|WP_110637312.1\|7233376_7234096_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187585
NZ_CP029788.1\|WP_110633767.1\|7227620_7227815_-\|antitoxin	unknown	unknown	gnl\|CDD\|379416
NZ_CP029788.1\|WP_110633800.1\|7244547_7248822_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP029788.1\|WP_110633762.1\|7226256_7227351_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP029788.1\|WP_110633813.1\|7254132_7255689_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP029788.1\|WP_110633793.1\|7238460_7239078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633770.1\|7227997_7228861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633778.1\|7229765_7230020_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633809.1\|7251794_7253987_-\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP029788.1\|WP_110633806.1\|7250579_7251779_+\|spore-photoproduct-lyase-family-protein	unknown	unknown	gnl\|CDD\|188401
NZ_CP029788.1\|WP_110633816.1\|7255881_7256889_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP029788.1\|WP_110633803.1\|7249426_7249900_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029788.1\|WP_110633774.1\|7228872_7229769_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357

Protein	Function_ID	Function_description	E-value
NZ_CP029788.1\|WP_110633781.1\|7230368_7231127_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236205	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein.	1.33701e-158
NZ_CP029788.1\|WP_110637312.1\|7233376_7234096_+\|SDR-family-oxidoreductase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.51673e-87
NZ_CP029788.1\|WP_110633806.1\|7250579_7251779_+\|spore-photoproduct-lyase-family-protein	gnl\|CDD\|188401	TIGR03886, hypothetical_protein_SlinDRAFT_56750, spore photoproduct lyase family protein. This uncharacterized radical SAM domain protein occurs rarely and sporadically in species that include select Alphaproteobacteria and Actinobacteria, and in Deinococcus deserti VCD115. It is a distant but full-length homolog to the Bacillus subtilis spore photoproduct lyase (spl), which monomerizes thymine dimers created as DNA damage by uv radiation.	0
NZ_CP029788.1\|WP_110637314.1\|7234144_7235044_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.11266e-11
NZ_CP029788.1\|WP_110633798.1\|7239750_7241661_-\|hypothetical-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	1.26042e-09
NZ_CP029788.1\|WP_110637316.1\|7241954_7244450_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	8.46257e-44
NZ_CP029788.1\|WP_110633796.1\|7239131_7239689_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|237512	PRK13800, PRK13800, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0.00218215
NZ_CP029788.1\|WP_110633784.1\|7231231_7231972_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.23389e-67
NZ_CP029788.1\|WP_110633767.1\|7227620_7227815_-\|antitoxin	gnl\|CDD\|379416	pfam14013, MT0933_antitox, MT0933-like antitoxin protein. This family of proteins contains the MT0933 protein, which has been identified as an antitoxin to /protein MT0934. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 90 amino acids in length.	3.99185e-12
NZ_CP029788.1\|WP_110633800.1\|7244547_7248822_-\|HAMP-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.8584e-59
NZ_CP029788.1\|WP_110633762.1\|7226256_7227351_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	1.20282e-48
NZ_CP029788.1\|WP_110633813.1\|7254132_7255689_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP029788.1\|WP_110633816.1\|7255881_7256889_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.03308e-22
NZ_CP029788.1\|WP_110633809.1\|7251794_7253987_-\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP029788.1\|WP_110633774.1\|7228872_7229769_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	6.17221e-08

>NZ_CP029788.1|WP_110637314.1|7234144_7235044_-|flippase-like-domain-containing-protein
MVPLLLVTVVAVRHRSVLAEGLARLRSAEWPWLVAAVGATCLTWVAAACTRQGAVVERLPWRRLLATQFAAGAANHLLPTGLGASAVNLRFLTVCGVPLARSSAALALYLLAECVGRLSLMAALLLVFPGALRFGALLPEDVFGPLLLAGSAVALAATTALVVVRRLRSAVCGFLRTALAEARAVHARPARALALWGGALAFPALQATALVLVGRALGLAVPPGHVAVAYLAATVAVALVPTPGGVGSVEAALVVALVAAGGPAAVATAVVLAYRILTVWLPLVPGALTLAALVRMKVI
>NZ_CP029788.1|WP_110637312.1|7233376_7234096_+|SDR-family-oxidoreductase
MSPHAPHTPPTPVALVTGANRGIGREVARQLAGLGHHVLLGSRDPRKGEQAAAAIDPGGERVRAVRLDVSDAASVTAMAERIARETGRVDVVVNNAAILYDSWARARAADLAEVQQALDTNLFGAWRVTQALLPLLERSPHPRVVNVSSEAGSLASMSGGTPAYSVSKAALNALTRLLAGELRAQRVLVNAVCPGWTDTDMGGGGRPVAEGAAGVVWAATLPDDGPTGGFFRDGKPVPW
>NZ_CP029788.1|WP_110633787.1|7232011_7233277_-|hypothetical-protein
MGDVGKIDQDAVLRARATLLASDTPSRARQVEAYRVLAEVSPESYLPKLAKALVSYGYEPEFRDRPEARLALNAEAVAVARRIDPDDPRRTEVLVDTLRSWQFELFRAGRRAEALAVCGEMAEVGRDGFARGQVTSPEYGAARLAVVLAEEGRHGEAAELLGRFAARARAESPWSAFWDGLAHVAELEAAGRRGEALDAFADLVAADCAELESGRTSLAIPVWLLVHHSRMLDAAGRPAEARAARARALGLLTELDATGERRTWGNMPAWWVTLLALSGRAAEPGYPAPAFGRHFTDWSPDLRQTYVDGIAPLEAEVAALRRAADADPDGPHLPELLERQRRLTVRSAVHREHRTHSVLKPLRPLFAEGVALARRLAARADPRRGRDALARALTDRAMFLLAGRQYGEAYDDFREVVALLD
>NZ_CP029788.1|WP_110633784.1|7231231_7231972_-|SDR-family-oxidoreductase
MSMDTADRPVALVTGSTSGIGEAVARRFAADGMRVVVHSRRSAAAGRALAEELGGTYLRADLEVEDEARGLMEAALDRYGRLDVLVNNAGISRPIPHADLAAATPADWRRLLEVNLIAPWVLCTAALPALRTAPGGGSIVNITSHAGVRPKGSSVPYAASKAALNHVTLLLAAALGPDVRVNAVAPGLVDTPMTKDWAGVHDLWRERAPMRRPARPEDVADLVASVVGSAYLTGEVIVLDGGLHLT
>NZ_CP029788.1|WP_110633781.1|7230368_7231127_-|crotonase/enoyl-CoA-hydratase-family-protein
MSVRVERRGPVTTVVLSRPEVRNAVDGPTAAELAAAFREFEADDSARAAVLWGEGGTFCAGADLKAMGGEHGNRVAEDGDGPMGPTRLRLSKPVIAAVAGHAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGTSRALDLILTGRPVPAREALEMGLANRVVAPGTARAAAEELAATLAAFPQGCLRSDRASVLDQEGLSEEEALRQELRYGARVLPEALEGAARFADGAGRHGSFG
>NZ_CP029788.1|WP_110633778.1|7229765_7230020_-|hypothetical-protein
MTSKKVLTVAVLATVLTWSTVMTVLGQVAAVAALLPSLGLLVQQIVQALTAPDGSRPADGTPAPDGRPPAGAGPVAAGGQEPPR
>NZ_CP029788.1|WP_110633774.1|7228872_7229769_-|sigma-70-family-RNA-polymerase-sigma-factor
MIWSPDADQPPPPDTFGPGGRRGRKPAPISDTAGLSHRAWLEPVRSLLFASGLTLNDLVDRSGYSKTRISELLRGNGYYPAWEITFSVIRALGLPGRPMLRLWTAAAREARKEPAWIRHSIEQVALQPERPPLAHRAFTEAMTRPYTDYARAFLLTEERARAAVWETFDILWLCWSEAATSADIRRYAWLLLRSRVMARAHRRQDGGPDLRAAVFSTAEVHDSVPGHVVVLSELVDLFDAIGRLPHDQLDVAVLRYLCGMPLDAVPDVLGLTPAIAHAVDHHARATLERLLSSHSPRE
>NZ_CP029788.1|WP_110633770.1|7227997_7228861_-|hypothetical-protein
MTSVDALLARARLHPGPDVPPDTVAYEDCAYFDLTADPATAPAGEPAGDDTAAEQLDRLCEVVVTAVAPGTLEFLTDQLPEPPAAWLLGCALHLAGVADGARFWWQYAAGAGHSPAAYCLSLHHHARGEEHAAAFWYDQTGLDEAAEADTFPVAGVCPSLSGFRFDASLPTVLRILSHLAAPGRRRLPHRADAVTNYVARAVAHGYRRHPGVEIPVPEPRFADRISFLLGTDPPWARRMARVFHRPALPSRAQSAGSAREGAGKGRTAAEAADAAAASTVASWGRPA
>NZ_CP029788.1|WP_110633767.1|7227620_7227815_-|antitoxin
MGMMDKLKQMLKGHPDQAGKAVDKGGDYIDQRTQGKYSGHVDTAQDRLKDQFGRGDQGPGEPRQ
>NZ_CP029788.1|WP_110633762.1|7226256_7227351_-|mechanosensitive-ion-channel-family-protein
MTRALTLDDWILAGIALAAGLFAAFLSRAVLRWLAKHAKRTRWSGDDVIVDALRSVVPWAAIAGGAAAAAAVLPLTRTVQRHTNQALTVLLIVVVTFSAARVIAGLVRSVTQSRSGVAGSATIFVNITRVLVLAIGFLVVLQTLGISIAPLLTALGVGGLAVALALQDTLANLFAGVHILASKTVQPGDYIRLSSGEEGYVEDINWRQTTVRALSNNLIVIPNGQLAKANMTNFMRPEQQLTILVQVGVAYDSDLEHVERVTTEVVAEVMTEITGAVPDHEPAVRFHTFGDTRIGFTVILGVGEFSDQYRIKHEFIKRLHRRFRQEGIRIPAPARDVTLRQGGLSIPQQRAAGEAGDVSAARLD
>NZ_CP029788.1|WP_110633793.1|7238460_7239078_+|hypothetical-protein
MTDAGPPVRETGAVFERVLDEALDCRQIRDALDRAGGALSREQLRSRARQARPAITAAAAAEYQEYLRSTCAEEASDDVPPPPAVRASLLFAGAAALLLPTGYGLSAVAGHPYIGGGLVTAGLIAGSLAVGAGAGDLLWQRLTRTTARPGDAAPRDPDAPRATPPAGAAGEAARAREAWELALRERGVVPFLLGRLEEAATGRRL
>NZ_CP029788.1|WP_110633796.1|7239131_7239689_+|XRE-family-transcriptional-regulator
MAGEIDDALDRAGQEAFTRQPPKTLKGRVNFLVRQLKSTQAVAREIGVSRRSVERYRSGERRHPPQAIADRIEAAVRARWQPRVRQQARARAATDTGITIETRARFGYTAPIGTTDDPRVRRLTVHLPPEYARRLFDAQQQGAGDPQLRRIVAEGLQEIYFKDNGRRAADLEVDISDIDYLDVSY
>NZ_CP029788.1|WP_110633798.1|7239750_7241661_-|hypothetical-protein
MIGRERETAAVAGLLAAHRLVTVTGPPGAGKSTVAAAAVAASVSAGWECLVQVRRQGSAPGRPGDLAADLVTRLTGAPPAGPVAPERAARALPDAPTLLWLDDVDPVHDECVRLVQQVLLRAPRTGVLVTSRRALGLDAERTVRLSGLRCRPAPEDGEGPAPAVELFLRHAPTGHGAPDPESVAEVCRLVEGLPLAVELAAEQTAQLPVRELVRLLRLSQTWLAGPRRAHRRHRSLRDAAGSAWMLCDTAVRTVWARASLFAGSFTETSAVHLCAGGAVEPAQVPSCLVQLAAHGVLEVRGEVGAVREHRYRMTRLAREFGAERLTARGEFAAAALRRSQRWGQVAAEAESLWERGAQSRAVRLVSEEYEELAALFAHACTEPSLAPAALQTGLRLWFWWVACDRAEEGADRLLALLPHCDGSPLLARGQWLAAWLSARTAPETARALLDDAWWASVLAGDTATVGRIAHVQGVLALQEGDARAAAGHFQLAADTIPAHAPGGPPATLSLAALALAQLRYAPAAARRSAHRALAQAGLRQDAWVCQVARYAQACTDHGLGRPGRAWQRARRALADTDDGLPATHGTSALRQLLADIETGSPARLELPAALVPHTAPLPAPRPSDREIRLGRGPAPA
>NZ_CP029788.1|WP_110637316.1|7241954_7244450_-|SpoIIE-family-protein-phosphatase
MSDQPAEPRELEASPAEVEHAGSGTGPAEVEYAGTGTGPLPAGPGEPAGASATSPVGRLAATVERLRQEVRSAQAEAEGRALIELAKGILVERLGCGPAQAARQLAELTDQAGVTLLEFAVDVINQAARDRLSEVTDAFLAATSGSRSADGGEAAVRLRAAESGALAAHDTQAVADSLLEHALRPLGAVAVAVWAAGSDGSLTLAGSAGFAPAEASRWRYVPPDVVTVARRGLTERSGQWIESLTETGLPTIGRHLYPDGGRAAVPAGTGGRIHGVLEIAWPTAVEPQPPQILRQVEALAELCAHTLENFTPGPDAVQEPRLVPDVAELMDLADGLHDPALVLVPHTDPAGQLVDFRIQHVNTRFLDPAGRPRAVINGELLLEAYPMTAGDSELFQRIERVYATGEPFRAQRMRLTALVGQVPLSAVADISISRHGASVLLIWRIEDETARLASLLQHAQRLGRIGGFEEDLLTGGITWNSQMYDLFGRPDTSLPVPLEDLPAHAHRDDAVIIGRFLRTLLHHRRPASAAFRLQRPDGVTRHVRVVAEPVQDAAGRLFVVRGAYQDISAQHWTEVALAATRDQLAHTEQQAAERNRLTLQLQHAIMPPAQAPLQAPGLEVAVRYRPAEAEQLVGGDWYDAVVLPSGQVLLCVGDVAGHGIEAATSMVVLRNALRGLAVTGAGPGQLLSWLNIVAHHLNGAVTATAVCGLYDPDRRVLRWARAGHLPPVLVRSGEAAPLPLVKGILLGALPDVVYEEAEELLAPEDTLLMYTDGLVERRDRSVEESVTHLVTTARSAPKTLDQQLDRLLTYGRSDTDDDTCLVGVRVMKEAS
>NZ_CP029788.1|WP_110633800.1|7244547_7248822_-|HAMP-domain-containing-protein
MASKNSAVVETVPGDEELRRLLDGLTAVRDGDFGTRLPDDGDGLMGDIAKVFNGMVDQLSVFTSEVTRVAREVGTEGTLGGQAQVPGVSGTWADLTDSVNAMAGNLTTQVRDIAQVATAVAKGDLSQKIDVPARGEILQLKETVNTMVDQLSAFADEVTRVAREVGSEGRLGGQAKVPGVAGVWRDLTDSVNLMAGNLTSQVRNVAQVTTAVAKGDLSQKITVDARGEILELKNTINTMVDQLSAFADEVTRVAREVGTEGRLGGQADVKGVRGTWRDLTDSVNFMAGNLTSQVRNVAQVATAVAEGDLSQKITVDARGEILELKNTINTMVDQLSAFADEVTRVAREVGTEGRLGGQAHVRGVSGTWKDLTDNVNVMASNLTSQVRSIAQVATAVARGDLSQKITVEAKGEVAALADAINTMVDTLSAFADEVTRVAREVGTEGRLGGQAQVPNVAGTWKDLTDNVNSMANNLTGQVRNIALVTTAVARGDLSKKIDVDARGEILELKTTINTMVDQLSAFADEVTRVAREVGTEGRLGGQAEVEGVSGTWKRLTENVNELAGNLTRQVRAIAEVASAVAEGDLTRSINVEASGEVAELKDNINSMVESLRETTRANQEQDWLKTNLARIAGLMQGHRDLPVVAELIMDELVPLVSAQYGAFYLMEDGEQGAELRLVGSYGRPADDPRPDPIPVGRSLVGQAARSRRTIAVDQLPADYVTISSGLGHTVPTTLLLLPILFEDQVLGVIELASITPFTPIHQDLLEQLRETIGVNVNTIVANARTDELLGESQRLTAELQVRSAELQAQQEELQRSNAELEEKASLLAAQNRDIEAKNLQIEQARQELEARAQQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPQRNLTQKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLRRLIDYVEATFRPMTTQKGLDFAVTTAAGAPRDLLTDDSRLRQVLRNLLSNAVKFTEQGQVELLIEPAADEEVPAAVVKGGSVVAFRVKDTGIGIQEQQLEAIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSAPGRGSTFTLYLPVARPDFETPVGRLPEQHAEPAVVQQAVEAPAALPAAAERAGRPRRLLVVEERPRGLLTLVAESVVADVARHREEDVLPWPDVELITAVSAQEAAGALAAEPCHCVVLDLDLPDGEAAQFLRALGGDSALADVPVLVHSSLRPDAAREESLRARADHAAVEFVAGLDELRERIALHLSAEEPGEVLSLARTEEPQQLTSHVVDTSLAGRTVLVVDDDARNLFALSGILELYGLRVLHAEDGRKGIDTLLANSDVSLVLMDVMMPEMDGYTATAEIRKMPQYADLPVVAVTAKAMPGDREKSLASGANDYVTKPVDTQELLACLRRWLAP
>NZ_CP029788.1|WP_110633803.1|7249426_7249900_-|hypothetical-protein
MTEANKGTDQKNGTAKRTTASRTRSAAGKATRQAERTARQSADGAAKGGSAVADGASKAKSAAAAGAADAARKTAGAAEAATRKLEAGRKAAAAATGQVTVAARTAWTALAHRKLLAMGVGAGATALTAASYAAGRRSGRAAQGFQGPLTRLTGGRI
>NZ_CP029788.1|WP_110633806.1|7250579_7251779_+|spore-photoproduct-lyase-family-protein
MPHPAGPSDDDGAATLFGLEALGAPGAPATGAPAEPSAGPAFRTGDTARRLLPVREIYAEPAAAASPRGRQIRERFPRARLIEVDSHWNIPGLHGNEGNVERWVRVKGETLVLGERKTLTTRPNGRSADWIAPGPSNGCAMACAYCYVPRRKGYANPVTVFTNIDTIIAHLGRHIARQGRKPAPNQCDDTAWVYDIGENGDCSVDALICDNTADLVHAFRQWPTAKASFATKFVNPDLLAYDPRGRTRIRFSVMPADDSRLLDVRTSPVAERVAAAADFVDAGYEVHFNLSPVVLRPGWQAAWGELLEHLDDVLPARVKEQSAAEVIMLTHNRDLHEVNLGWHPKAEDALWRPALQQSKRSENGALNVRYRNQVKAEALHDLRGLIAARAPWLRIRYAF
>NZ_CP029788.1|WP_110633809.1|7251794_7253987_-|catalase/peroxidase-HPI
MSGSESENPAIPSPTPTPTRRPRTNRDWWPNQLDLQVLHQHSPLSDPLGEDFDYAKEFATLDVEALKRDVFEVMTSSQDWWPADYGHYGPLFIRMSWHAAGTYRIADGRGGGGSGAQRFAPLNSWPDNASLDKARRLLWPVKQKYGRKISWADLLVFAGNCAMESMGFETFGFGFGREDIWEPEEIFWGPEDTWLGDERYSGDRELTGPFAAVQMGLIYVNPEGPNGNPDPMAAARDIRETFGRMAMNDEETVALIVGGHTFGKCHGAVDPSYIGPEPEAAPIEQQGLGWRNTYGSGKGPDALTSGLEGAWTTAPTTWDNGYLDNLYGYEWELTRSPAGAHQWTPTDPAARDTVPDAHDPSKRHAPMMLTTDLALKVDPVYGPITKRFHEHPEELALAFAKAWYKLLHRDMGPVSRYLGPWVPEPQLWQDPVPAVDHDLVGAEDIADLKSRILATGLSVPQLVTTAWASASSFRGTDKRGGANGARIRLAPQKDWELNNLPEVTEVLRALEQIQQDFNASQTGGTRISLADLIVLGGCAAVERAARNAGYDITVPFAPGRTDASQEQTDAETFAVLEPKADAFRNHLPAGEKLSPETLMLDRANLLTLTAPEMTVLIGGMRVLNTGFKGSPHGLLTHRPESLTTDFFVNLLDMGTEWKASATDENVFEGRDRATGEVKWTATAVDLVFGAHAQLRALSEVYACRDSGEKFVRDFVAAWNKVMNLDRFDLA
>NZ_CP029788.1|WP_110633813.1|7254132_7255689_-|choline-dehydrogenase
MSTYDYVIVGAGSAGCVLAARLSEDPEVRVALIEAGGPDTAQEIHVPAAFPQLFKSALDWDLDSEPEPGIGNRRAYLPRGRVFGGCSSINAMIYIRGNRADYDGWAAAGADGWSYDEVLPYFKRSEGNERGEDEFHGADGPLTVSDGRSEHPLASAFVQAAVQAGHKANDDFNGATQFGVGRYQLTQRGGLRCSAAVAYLHPALERPNLTVLSFALAHRVVIEGGRATGVEVERGGAVEVVRAEREVILSAGAYESPKLLMLSGIGPAATLSAFGIDVVRDLPVGEGLQDHYMTLLNFRTDVESLLTAATPENAALLQNEGRGHLTSNIGETGGFFRSRDDLTAPDLQFHAAPVLFHQEGLGAAAEHGFSFGPCVLAPAGRGAVTLRSPRPDAAPRITHNYLVAPEDQEVIVAGLRVALEIAAQPAVTDLATGPYLVPESDADADLLAWARRHGQTLYHPTSTCAIGSVVDPELRVYGVPGLRVVDASVFPTVPRGNTNAPTVMAAEKAADLITGAGR
>NZ_CP029788.1|WP_110633816.1|7255881_7256889_-|LysR-family-transcriptional-regulator
MDLDLALVRAFVATAGTLHFGRAAEELGTSQQALSKRVARLEEALGVRLFERRGGVRLSGAGERFLPAAREALAAGERAVASVTGAGPVVRIDTWGHLYAPMRTVAEAVQALGRVGEVPSAGRRGPGAVRWEPAPGRDWPSVAQALLRGDTDLGFGRVHPLPDGRDAGLTQRLVRLEPVDVVVGPSHPLAGAEALRPAGLRGSVLWCPAELNRLDFLRRFADEFGIARRHDGPNLGLDHLVRHLRTDREGFTLFPADAPLPDHTDVRRVPLVGPTPLYAWSLTWRESSRHPLLDTLLRGFTETGRARRWLEYDPRRDWLPDSDRPKLAVDRTPAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029788_2	2.1\|1182322\|22\|NZ_CP029788\|CRISPRCasFinder	1182322-1182343	22	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	69645-69666	1	0.955
NZ_CP029788_2	2.1\|1182322\|22\|NZ_CP029788\|CRISPRCasFinder	1182322-1182343	22	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	69777-69798	1	0.955
NZ_CP029788_15	15.1\|7237546\|22\|NZ_CP029788\|CRISPRCasFinder	7237546-7237567	22	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	347546-347567	1	0.955
NZ_CP029788_15	15.1\|7237546\|22\|NZ_CP029788\|CRISPRCasFinder	7237546-7237567	22	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	522584-522605	1	0.955
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1268900-1268923	2	0.917
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	518872-518895	2	0.917
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1268907-1268930	2	0.917
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1294204-1294227	2	0.917
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1195847-1195870	2	0.917
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1142434-1142457	2	0.917
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1489995-1490019	2	0.92
NZ_CP029788_15	15.1\|7237546\|22\|NZ_CP029788\|CRISPRCasFinder	7237546-7237567	22	MG652450	Ralstonia phage RsoP1IDN, complete genome	3693-3714	2	0.909
NZ_CP029788_15	15.1\|7237546\|22\|NZ_CP029788\|CRISPRCasFinder	7237546-7237567	22	NC_014214	Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence	15511-15532	2	0.909
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	NC_012852	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence	197380-197403	3	0.875
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	6206-6229	3	0.875
NZ_CP029788_6	6.1\|3410971\|24\|NZ_CP029788\|CRISPRCasFinder	3410971-3410994	24	MN234216	Streptomyces phage Gilgamesh, complete genome	45416-45439	3	0.875
NZ_CP029788_6	6.2\|3411018\|24\|NZ_CP029788\|CRISPRCasFinder	3411018-3411041	24	NC_021295	Burkholderia insecticola plasmid p2, complete sequence	100230-100253	3	0.875
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1962192-1962216	3	0.88
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	2107914-2107938	3	0.88
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	279936-279960	3	0.88
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP035710	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence	217854-217878	3	0.88
NZ_CP029788_4	4.1\|3245658\|25\|NZ_CP029788\|CRISPRCasFinder	3245658-3245682	25	NZ_CP050953	Rhodococcus sp. DMU1 plasmid unnamed	184274-184298	4	0.84
NZ_CP029788_4	4.1\|3245658\|25\|NZ_CP029788\|CRISPRCasFinder	3245658-3245682	25	NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	105847-105871	4	0.84
NZ_CP029788_4	4.1\|3245658\|25\|NZ_CP029788\|CRISPRCasFinder	3245658-3245682	25	NC_011984	Agrobacterium vitis S4 plasmid pAtS4c, complete sequence	163379-163403	4	0.84
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	MN304817	Phage 68_12, complete genome	14960-14984	4	0.84
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_LR134467	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 25, complete sequence	100153-100177	4	0.84
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	573296-573320	5	0.8
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1477761-1477785	5	0.8
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	475318-475342	5	0.8
NZ_CP029788_9	9.1\|6122312\|25\|NZ_CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	259352-259376	5	0.8
NZ_CP029788_10	10.1\|6577865\|28\|NZ_CP029788\|CRISPRCasFinder	6577865-6577892	28	NZ_CP026745	Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence	137700-137727	5	0.821
NZ_CP029788_11	11.1\|6578243\|31\|NZ_CP029788\|CRISPRCasFinder	6578243-6578273	31	NZ_CP020385	Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence	31888-31918	5	0.839
NZ_CP029788_13	13.1\|6917049\|27\|NZ_CP029788\|CRISPRCasFinder	6917049-6917075	27	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	301739-301765	5	0.815
NZ_CP029788_10	10.1\|6577865\|28\|NZ_CP029788\|CRISPRCasFinder	6577865-6577892	28	NZ_AP022578	Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence	95731-95758	6	0.786
NZ_CP029788_10	10.1\|6577865\|28\|NZ_CP029788\|CRISPRCasFinder	6577865-6577892	28	NZ_CP010024	Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence	322018-322045	6	0.786
NZ_CP029788_11	11.1\|6578243\|31\|NZ_CP029788\|CRISPRCasFinder	6578243-6578273	31	NZ_CP038257	Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence	122966-122996	7	0.774
NZ_CP029788_1	1.1\|1166454\|31\|NZ_CP029788\|CRISPRCasFinder	1166454-1166484	31	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1166125-1166155	8	0.742
NZ_CP029788_1	1.1\|1166454\|31\|NZ_CP029788\|CRISPRCasFinder	1166454-1166484	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2219021-2219051	9	0.71
NZ_CP029788_1	1.1\|1166454\|31\|NZ_CP029788\|CRISPRCasFinder	1166454-1166484	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3965174-3965204	9	0.71
NZ_CP029788_1	1.1\|1166454\|31\|NZ_CP029788\|CRISPRCasFinder	1166454-1166484	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4829225-4829255	9	0.71
NZ_CP029788_3	3.1\|2568169\|34\|NZ_CP029788\|CRISPRCasFinder	2568169-2568202	34	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	340030-340063	9	0.735
NZ_CP029788_8	8.1\|5325505\|35\|NZ_CP029788\|CRISPRCasFinder	5325505-5325539	35	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	225277-225311	9	0.743

1. spacer 2.1|1182322|22|NZ_CP029788|CRISPRCasFinder matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 1, identity: 0.955

ctaccagcagcagcccgggtac	CRISPR spacer
ctaccagcagcagcccggctac	Protospacer
****************** ***

2. spacer 2.1|1182322|22|NZ_CP029788|CRISPRCasFinder matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 1, identity: 0.955

ctaccagcagcagcccgggtac	CRISPR spacer
ctaccagcagcagcccgcgtac	Protospacer
***************** ****

3. spacer 15.1|7237546|22|NZ_CP029788|CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 1, identity: 0.955

tgaggtccgccccgcgcaggtc	CRISPR spacer
tgaggtcggccccgcgcaggtc	Protospacer
******* **************

4. spacer 15.1|7237546|22|NZ_CP029788|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 1, identity: 0.955

tgaggtccgccccgcgcaggtc	CRISPR spacer
tgaggtcggccccgcgcaggtc	Protospacer
******* **************

5. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cggccacggtccgttcggcgtcgc	Protospacer
* * ********************

6. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
ccggcacgggccgatcggcgtcgc	Protospacer
********* *** **********

7. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cggccacggtccgttcggcgtcgc	Protospacer
* * ********************

8. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
ccggcacgggccgatcggcgtcgc	Protospacer
********* *** **********

9. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cggccacggtccgttcggcgtcgc	Protospacer
* * ********************

10. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cggccacggtccgttcggcgtcgc	Protospacer
* * ********************

11. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.92

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgtggcgttgggcgggaac	Protospacer
********** ** ***********

12. spacer 15.1|7237546|22|NZ_CP029788|CRISPRCasFinder matches to MG652450 (Ralstonia phage RsoP1IDN, complete genome) position: , mismatch: 2, identity: 0.909

tgaggtccgccccgcgcaggtc	CRISPR spacer
ccaggtccgccccgcgcaggtc	Protospacer
. ********************

13. spacer 15.1|7237546|22|NZ_CP029788|CRISPRCasFinder matches to NC_014214 (Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence) position: , mismatch: 2, identity: 0.909

tgaggtccgccccgcgcaggtc	CRISPR spacer
cgaggtccgccccccgcaggtc	Protospacer
.************ ********

14. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to NC_012852 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence) position: , mismatch: 3, identity: 0.875

ccggcacggtccgttcggcgtcgc	CRISPR spacer
acggcaggatccgttcggcgtcgc	Protospacer
 ***** *.***************

15. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 3, identity: 0.875

ccggcacggtccgttcggcgtcgc	CRISPR spacer
ccggcacggtcggttcggcggcga	Protospacer
*********** ******** **

16. spacer 6.1|3410971|24|NZ_CP029788|CRISPRCasFinder matches to MN234216 (Streptomyces phage Gilgamesh, complete genome) position: , mismatch: 3, identity: 0.875

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cccgcacggcccgttcggcgtcgg	Protospacer
** ******.*************

17. spacer 6.2|3411018|24|NZ_CP029788|CRISPRCasFinder matches to NC_021295 (Burkholderia insecticola plasmid p2, complete sequence) position: , mismatch: 3, identity: 0.875

gagcctggtctgcccggtgctgcg	CRISPR spacer
gagcatggtctgcgcggtgctgct	Protospacer
**** ******** *********

18. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 3, identity: 0.88

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgtgccggcggccgggaaa	Protospacer
**************.** ******

19. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 3, identity: 0.88

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgtgccggcggccgggaaa	Protospacer
**************.** ******

20. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 3, identity: 0.88

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccctccgtgccggtgggcgggaac	Protospacer
***   *******************

21. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP035710 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence) position: , mismatch: 3, identity: 0.88

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gtcgggcgtgccggtcggcgcgaac	Protospacer
*.************* **** ****

22. spacer 4.1|3245658|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 4, identity: 0.84

agcttccgctcccaccgacgacgcg	CRISPR spacer
cacttccgctccgcccgacgacgcg	Protospacer
 .**********  ***********

23. spacer 4.1|3245658|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 4, identity: 0.84

agcttccgctcccaccgacgacgcg	CRISPR spacer
atcggccgctcccaccgacgacgcc	Protospacer
* *  *******************

24. spacer 4.1|3245658|25|NZ_CP029788|CRISPRCasFinder matches to NC_011984 (Agrobacterium vitis S4 plasmid pAtS4c, complete sequence) position: , mismatch: 4, identity: 0.84

agcttccgctcccaccgacgacgcg	CRISPR spacer
cgcttccgttcccaccgccgacgct	Protospacer
 *******.******** ******

25. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to MN304817 (Phage 68_12, complete genome) position: , mismatch: 4, identity: 0.84

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gacgggcgtgtcggtgggcgggacg	Protospacer
* ********.************

26. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_LR134467 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 25, complete sequence) position: , mismatch: 4, identity: 0.84

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgcgccggtgggcggcacg	Protospacer
********.************ *

27. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 5, identity: 0.8

gccgggcgtgccggtgggcgggaac	CRISPR spacer
ccccggcgtgccggtgggcgggcgg	Protospacer
 ** ****************** .

28. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 5, identity: 0.8

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgtgccggtgggcaccaga	Protospacer
*******************.  *.

29. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.8

gccgggcgtgccggtgggcgggaac	CRISPR spacer
ccccggcgtgccggtgggcgggcgg	Protospacer
 ** ****************** .

30. spacer 9.1|6122312|25|NZ_CP029788|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.8

gccgggcgtgccggtgggcgggaac	CRISPR spacer
ccccggcgtgccggtgggcgggcgg	Protospacer
 ** ****************** .

31. spacer 10.1|6577865|28|NZ_CP029788|CRISPRCasFinder matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tggacgaccgtttcgtctccgcgaccgg	CRISPR spacer
gggcggaccgtttcgtcgcggcgaccgg	Protospacer
 **  ************ * ********

32. spacer 11.1|6578243|31|NZ_CP029788|CRISPRCasFinder matches to NZ_CP020385 (Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence) position: , mismatch: 5, identity: 0.839

caccgtcgccgtccgcggtccccgcaccccc	CRISPR spacer
caccgtcgccgtctgcgggccccgcacatcg	Protospacer
*************.**** ******** .*

33. spacer 13.1|6917049|27|NZ_CP029788|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 5, identity: 0.815

ccatgtgcctcccggcagaggggcggc	CRISPR spacer
tccggtgcctcccgacagagtggcggc	Protospacer
.*  **********.***** ******

34. spacer 10.1|6577865|28|NZ_CP029788|CRISPRCasFinder matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 6, identity: 0.786

tggacgaccgtttcgtctccgcgaccgg	CRISPR spacer
tggacgaccgtgtcgtcgccgcggtgcg	Protospacer
*********** ***** *****..  *

35. spacer 10.1|6577865|28|NZ_CP029788|CRISPRCasFinder matches to NZ_CP010024 (Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence) position: , mismatch: 6, identity: 0.786

tggacgaccgtttcgtctccgcgaccgg	CRISPR spacer
tggacgaccgtttcgtcagcgcgctgga	Protospacer
*****************  **** . *.

36. spacer 11.1|6578243|31|NZ_CP029788|CRISPRCasFinder matches to NZ_CP038257 (Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

caccgtcgccgtccgcggtccccgcaccccc	CRISPR spacer
cgccgtcgccggccgcggtgcccgcgtcgca	Protospacer
*.********* ******* *****..* *

37. spacer 1.1|1166454|31|NZ_CP029788|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.742

gggggttcgggtgggctgctgccgcatggtt	CRISPR spacer
gcgggttcgggttgcctgctgccgcgagcgg	Protospacer
* ********** * **********. *

38. spacer 1.1|1166454|31|NZ_CP029788|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

gggggttcgggtgggctgctgccgcatggtt	CRISPR spacer
cggggttcgggtgggctgtcgccggggtggc	Protospacer
 *****************..**** .  * .

39. spacer 1.1|1166454|31|NZ_CP029788|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

gggggttcgggtgggctgctgccgcatggtt	CRISPR spacer
cggggttcgggtgggctgtcgccggggtggc	Protospacer
 *****************..**** .  * .

40. spacer 1.1|1166454|31|NZ_CP029788|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

gggggttcgggtgggctgctgccgcatggtt	CRISPR spacer
cggggttcgggtgggctgtcgccggggtggc	Protospacer
 *****************..**** .  * .

41. spacer 3.1|2568169|34|NZ_CP029788|CRISPRCasFinder matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gtgtgcctgcggcggcctgtgcgggtgggtgggg	CRISPR spacer
gcgggccggcggcggtctgtgcgggtggcgctcg	Protospacer
*.* *** *******.************     *

42. spacer 8.1|5325505|35|NZ_CP029788|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.743

tgcgctcttggaggccggtcgggggccggaggccg	CRISPR spacer
cgccgatatggaggccggtcgggtgccggagaccc	Protospacer
.**   . *************** *******.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2049714 : 2058992

Streptomyces_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110627463.1\|2049714_2050323_-	recombinase family protein	A0A0C4UR34	Shigella_phage	2.1e-19	36.8
WP_110627464.1\|2050543_2050822_+	hypothetical protein	NA	NA	NA	NA
WP_110627465.1\|2050877_2051093_-	hypothetical protein	NA	NA	NA	NA
WP_110627466.1\|2051189_2051927_-	hypothetical protein	NA	NA	NA	NA
WP_162655476.1\|2051976_2052126_-	hypothetical protein	NA	NA	NA	NA
WP_110627467.1\|2052128_2052488_-	hypothetical protein	NA	NA	NA	NA
WP_110627468.1\|2052484_2052928_-	hypothetical protein	Q6VY36	Streptomyces_phage	1.9e-54	66.0
WP_110627469.1\|2052928_2053285_-	hypothetical protein	NA	NA	NA	NA
WP_110627470.1\|2053307_2054225_-	N-acetylmuramoyl-L-alanine amidase	A0A1J0MBU5	Streptomyces_phage	6.1e-103	58.0
WP_110627471.1\|2054282_2054903_-	hypothetical protein	A0A2H5BLW8	Streptomyces_phage	3.5e-54	52.2
WP_110627472.1\|2054915_2055641_-	hypothetical protein	NA	NA	NA	NA
WP_110636282.1\|2055640_2056738_-	DUF5047 domain-containing protein	Q6VY40	Streptomyces_phage	4.4e-84	50.3
WP_110627473.1\|2056748_2058992_-	hypothetical protein	Q6VY41	Streptomyces_phage	6.7e-188	51.0

DBSCAN-SWA_2

2067652 : 2078172

Streptomyces_phage(55.56%)

portal,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110627482.1\|2067652_2068606_-\|capsid	phage major capsid protein	V5R986	Arthrobacter_phage	3.8e-39	35.6
WP_110627483.1\|2068619_2069207_-	hypothetical protein	NA	NA	NA	NA
WP_110627484.1\|2069266_2070040_-	hypothetical protein	A0A2H5BLE7	Streptomyces_phage	4.6e-11	29.3
WP_110627485.1\|2070020_2071427_-\|portal	phage portal protein	A0A2H4JAT8	uncultured_Caudovirales_phage	3.6e-70	40.3
WP_110627486.1\|2071423_2073154_-\|terminase	terminase	K4NXE0	Streptomyces_phage	1.3e-135	48.1
WP_110627487.1\|2073143_2073395_-	hypothetical protein	NA	NA	NA	NA
WP_110636291.1\|2073396_2073909_-	hypothetical protein	A0A2H5BLH4	Streptomyces_phage	1.7e-30	51.7
WP_110636288.1\|2073913_2074504_-	DNA primase	A0A0M4RQA4	Streptomyces_phage	2.3e-34	47.3
WP_110627488.1\|2074756_2074960_-	hypothetical protein	NA	NA	NA	NA
WP_110627490.1\|2075243_2075444_-	hypothetical protein	NA	NA	NA	NA
WP_110627491.1\|2075446_2075740_-	HNH endonuclease	A0A220NS00	Mycobacterium_phage	6.0e-12	46.5
WP_110627492.1\|2075736_2076198_-	hypothetical protein	Q6VY58	Streptomyces_phage	2.2e-21	42.7
WP_110627493.1\|2076218_2076443_-	hypothetical protein	NA	NA	NA	NA
WP_110627494.1\|2076435_2076978_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_110627495.1\|2076987_2078172_-	hypothetical protein	Q859A9	Streptomyces_virus	6.6e-09	33.3

DBSCAN-SWA_3

2093243 : 2101503

Gordonia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110627521.1\|2093243_2093768_-	hypothetical protein	A0A2H4PF46	Gordonia_phage	2.3e-06	40.4
WP_110627522.1\|2093866_2094100_-	hypothetical protein	NA	NA	NA	NA
WP_110636300.1\|2094096_2094417_-	hypothetical protein	NA	NA	NA	NA
WP_162655480.1\|2094383_2094716_-	hypothetical protein	NA	NA	NA	NA
WP_110627523.1\|2094712_2095471_-	hypothetical protein	Q6VY73	Streptomyces_phage	2.8e-37	42.7
WP_110627524.1\|2095467_2096556_-	hypothetical protein	A0A0R8VA02	Thermobifida_phage	5.6e-47	42.9
WP_162655481.1\|2096641_2098240_-	DNA cytosine methyltransferase	I4AZL4	Saccharomonospora_phage	1.3e-76	47.2
WP_110627527.1\|2098846_2099041_-	hypothetical protein	NA	NA	NA	NA
WP_110627528.1\|2099037_2099403_-	hypothetical protein	NA	NA	NA	NA
WP_110627529.1\|2099399_2099690_-	hypothetical protein	NA	NA	NA	NA
WP_110627530.1\|2099752_2100583_-	hypothetical protein	A0A1B3B1U8	Gordonia_phage	4.5e-89	63.1
WP_162655482.1\|2100579_2101503_-	hypothetical protein	A0A0R8VB90	Thermobifida_phage	1.6e-63	48.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029788

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection