CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029804	Erysipelothrix rhusiopathiae strain ML101 chromosome, complete genome	0 crisprs	DEDDh,cas3,WYL,csa3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

623199 : 662717

Erysipelothrix_phage(21.74%)

tail,holin,capsid,portal,protease,integrase,terminase

attL 627116:627140|attR 663476:663500

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013852765.1\|623199_623964_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003773236.1\|623968_624538_+	hypothetical protein	NA	NA	NA	NA
WP_013852766.1\|624530_625259_-	hypothetical protein	NA	NA	NA	NA
WP_003773238.1\|625356_625554_-	hypothetical protein	NA	NA	NA	NA
WP_050921054.1\|625936_626221_-	Ltp family lipoprotein	A0A097BY93	Leuconostoc_phage	3.5e-09	59.2
627116:627140	attL	NA	NA	NA	NA
WP_013852768.1\|627141_628356_-\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	2.6e-24	27.4
WP_062810479.1\|628438_629467_-	Abi family protein	A0A1Q1PVS3	Staphylococcus_phage	1.0e-29	31.3
WP_013852770.1\|629577_629940_-	hypothetical protein	NA	NA	NA	NA
WP_013852771.1\|630066_630483_-	helix-turn-helix transcriptional regulator	H0UST7	Bacillus_phage	6.3e-07	31.9
WP_013852772.1\|630611_630818_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013852773.1\|630855_631110_+	hypothetical protein	NA	NA	NA	NA
WP_013852775.1\|631223_631604_-	hypothetical protein	NA	NA	NA	NA
WP_062810478.1\|631651_632254_+	hypothetical protein	NA	NA	NA	NA
WP_013852777.1\|632246_632465_+	hypothetical protein	NA	NA	NA	NA
WP_013852778.1\|632451_633732_+	AAA family ATPase	A0A097BY67	Enterococcus_phage	1.1e-142	62.7
WP_050921055.1\|633734_634814_+	ATP-binding protein	A0A097BY66	Enterococcus_phage	1.1e-87	48.4
WP_062810477.1\|634831_635290_+	DUF669 domain-containing protein	A0A0K2CZ91	Paenibacillus_phage	3.3e-33	49.7
WP_013852781.1\|635293_636883_+	DEAD/DEAH box helicase	A0A0K2CZF8	Paenibacillus_phage	1.2e-228	73.5
WP_062810476.1\|637055_637547_-	hypothetical protein	NA	NA	NA	NA
WP_013852783.1\|637632_639906_+	AAA family ATPase	Q5YA88	Bacillus_phage	6.4e-271	62.4
WP_013852784.1\|640381_640642_+	hypothetical protein	NA	NA	NA	NA
WP_145958531.1\|640655_640901_+	hypothetical protein	NA	NA	NA	NA
WP_013852786.1\|640893_641298_+	RusA family crossover junction endodeoxyribonuclease	Q5YA86	Bacillus_phage	6.1e-39	58.8
WP_144742865.1\|641493_641904_+	hypothetical protein	NA	NA	NA	NA
WP_158308987.1\|642102_642240_+	hypothetical protein	NA	NA	NA	NA
WP_189283563.1\|642208_642736_+	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_013852791.1\|642916_644413_+	hypothetical protein	NA	NA	NA	NA
WP_013852793.1\|644824_645289_+	hypothetical protein	A0A0A7RTX1	Clostridium_phage	6.5e-29	46.3
WP_013852794.1\|645269_646643_+\|terminase	phage terminase large subunit	A0A2H4J7G6	uncultured_Caudovirales_phage	7.9e-131	52.4
WP_013852795.1\|646642_647971_+\|portal	phage portal protein	A0A2H4JDT5	uncultured_Caudovirales_phage	2.3e-66	36.6
WP_062810475.1\|647948_649532_+\|capsid	minor capsid protein	A0A141E1Y0	Streptococcus_phage	5.3e-30	33.0
WP_013852798.1\|649506_649731_+	hypothetical protein	NA	NA	NA	NA
WP_013852799.1\|649912_650524_+	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_013852800.1\|650528_651485_+	hypothetical protein	D2IYW7	Enterococcus_phage	2.4e-57	43.5
WP_013852801.1\|651504_651870_+	hypothetical protein	NA	NA	NA	NA
WP_041690528.1\|651862_652180_+	hypothetical protein	NA	NA	NA	NA
WP_013852803.1\|652170_652695_+	HK97 gp10 family phage protein	A0A060QNE4	Streptococcus_phage	1.6e-15	33.6
WP_013852804.1\|652691_653006_+	hypothetical protein	NA	NA	NA	NA
WP_013852805.1\|653065_653494_+\|tail	major tail protein	R9TNE5	Paenibacillus_phage	2.1e-13	36.0
WP_013852806.1\|653509_653869_+	hypothetical protein	NA	NA	NA	NA
WP_013852807.1\|654012_654204_+	hypothetical protein	NA	NA	NA	NA
WP_013852808.1\|654200_656801_+	tape measure protein	A0A2P1JTW1	Anoxybacillus_phage	2.7e-31	35.3
WP_013852809.1\|656811_657180_+	hypothetical protein	NA	NA	NA	NA
WP_013852810.1\|657179_658787_+	hypothetical protein	A0A0H4TFF7	Erysipelothrix_phage	5.9e-53	76.6
WP_013852811.1\|658786_660829_+	phage structural protein	A0A0H4TI29	Erysipelothrix_phage	0.0e+00	95.9
WP_013852812.1\|660841_661081_+	hypothetical protein	A0A0H4U092	Erysipelothrix_phage	5.9e-34	97.5
WP_013852813.1\|661073_661445_+\|holin	phage holin family protein	A0A0H4TEZ1	Erysipelothrix_phage	9.4e-63	100.0
WP_062810474.1\|662486_662717_+	hypothetical protein	A0A0H4TFF4	Erysipelothrix_phage	5.3e-32	97.4
663476:663500	attR	NA	NA	NA	NA

DBSCAN-SWA_2

668377 : 747171

Tupanvirus(15.38%)

transposase,bacteriocin,tRNA,protease,integrase

attL 727903:727919|attR 752333:752349

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003773253.1\|668377_669100_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_003773604.1\|669221_670160_+\|transposase	IS30-like element ISErh4 family transposase	Q9MBM9	Staphylococcus_prophage	4.1e-22	28.5
WP_013852820.1\|670200_671505_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_003773255.1\|671655_672039_+	hypothetical protein	NA	NA	NA	NA
WP_013852821.1\|672028_673171_+	pyridoxal phosphate-dependent aminotransferase	A0A1X7QHI1	Faustovirus	4.6e-07	25.4
WP_003773257.1\|673326_674250_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_003773259.1\|674252_675137_+	elongation factor Ts	NA	NA	NA	NA
WP_003773260.1\|675188_675902_+	UMP kinase	NA	NA	NA	NA
WP_003773261.1\|675904_676450_+	ribosome recycling factor	NA	NA	NA	NA
WP_003773262.1\|676452_677133_+	isoprenyl transferase	A0A076FI83	Aureococcus_anophage	9.6e-13	25.0
WP_013852823.1\|677134_677902_+	phosphatidate cytidylyltransferase	A0A2K9L268	Tupanvirus	3.7e-05	26.8
WP_013852824.1\|677911_678976_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003773265.1\|679047_679491_+	hypothetical protein	NA	NA	NA	NA
WP_013852825.1\|679503_680163_-	hemolysin III family protein	NA	NA	NA	NA
WP_013852826.1\|680315_682112_+	glucosaminidase domain-containing protein	NA	NA	NA	NA
WP_062810473.1\|682121_683606_+	hypothetical protein	NA	NA	NA	NA
WP_003773269.1\|683745_684207_+	hypothetical protein	NA	NA	NA	NA
WP_003773270.1\|684209_684716_+	DnaD domain protein	NA	NA	NA	NA
WP_013852828.1\|684712_685333_+	endonuclease III	NA	NA	NA	NA
WP_013852829.1\|685329_686652_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_013852830.1\|686652_687669_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_013852831.1\|687665_688793_+	alanine racemase	NA	NA	NA	NA
WP_013852832.1\|688854_691911_-	penicillin-binding protein	NA	NA	NA	NA
WP_013852833.1\|691907_692489_-	Holliday junction resolvase RecU	R9TMF8	Paenibacillus_phage	3.7e-21	32.8
WP_013852834.1\|692615_692930_+	DivIVA domain-containing protein	NA	NA	NA	NA
WP_003773281.1\|694324_694918_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_013852836.1\|694949_695975_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.2e-119	62.1
WP_013852837.1\|696086_697643_+	ribonuclease Y	NA	NA	NA	NA
WP_003773287.1\|697642_698407_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA
WP_003773289.1\|698550_700209_+	ribonuclease J	NA	NA	NA	NA
WP_062810472.1\|700222_702571_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-81	47.1
WP_110899873.1\|702742_708733_+	Cna B-type domain-containing protein	NA	NA	NA	NA
WP_062810471.1\|708969_711342_+	Cna B-type domain-containing protein	NA	NA	NA	NA
WP_013852841.1\|711410_713096_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	5.9e-11	30.7
WP_013852842.1\|713389_713614_+	YneF family protein	NA	NA	NA	NA
WP_013852843.1\|714371_715367_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003773302.1\|715480_715918_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_013852844.1\|715914_717033_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_013852845.1\|717016_717745_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_013852846.1\|717761_719897_+	ATP-dependent RecD-like DNA helicase	A0A1P8DII4	Virus_Rctr197k	3.9e-36	32.7
WP_013852847.1\|720054_720462_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_013852848.1\|720558_721989_+	beta-Ala-His dipeptidase	NA	NA	NA	NA
WP_013852849.1\|722100_722574_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_013852850.1\|722625_723486_+	DUF5596 domain-containing protein	NA	NA	NA	NA
WP_013852851.1\|723557_724226_+	hypothetical protein	NA	NA	NA	NA
WP_013852852.1\|725090_725633_+	replication initiator protein A	A0A286QNA4	Streptococcus_phage	1.3e-20	45.2
WP_003773326.1\|726881_728168_-	hypothetical protein	NA	NA	NA	NA
727903:727919	attL	NA	NA	NA	NA
WP_041690530.1\|728169_729270_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_003773332.1\|729262_730117_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-30	36.1
WP_062810469.1\|730118_731696_-	ABC transporter ATP-binding protein/permease	A0A1V0SKJ1	Klosneuvirus	3.7e-07	26.8
WP_013852855.1\|731748_731937_-	hypothetical protein	NA	NA	NA	NA
WP_003773336.1\|731929_732199_-	hypothetical protein	NA	NA	NA	NA
WP_013852856.1\|732213_733209_-	hypothetical protein	NA	NA	NA	NA
WP_013852857.1\|733205_734594_-	radical SAM protein	NA	NA	NA	NA
WP_003773349.1\|736750_737320_-	hypothetical protein	NA	NA	NA	NA
WP_062810466.1\|737389_739573_-	hypothetical protein	NA	NA	NA	NA
WP_081484478.1\|739765_740077_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0C5AEB1	Paenibacillus_phage	6.5e-17	59.2
WP_003773353.1\|740077_740446_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_110899918.1\|745065_747171_+\|bacteriocin	bacteriocin transporter	NA	NA	NA	NA
752333:752349	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1358277 : 1387456

Streptococcus_phage(96.3%)

integrase

attL 1360911:1360925|attR 1378959:1378973

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000420682.1\|1358277_1358592_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000985015.1\|1358607_1358994_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_062810427.1\|1359022_1360408_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	5.5e-265	99.8
WP_000879507.1\|1360410_1360563_+	hypothetical protein	NA	NA	NA	NA
WP_000398284.1\|1360585_1361791_+	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
1360911:1360925	attL	NA	NA	NA	NA
WP_001009056.1\|1361833_1362055_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000342539.1\|1362171_1362669_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_000506270.1\|1362643_1363150_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000331160.1\|1363133_1365581_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000804748.1\|1365583_1367761_+	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000769868.1\|1367757_1368759_+	bifunctional lysozyme/C40 family peptidase	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_001224318.1\|1368755_1369688_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-171	99.4
WP_001814923.1\|1369932_1370049_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_189283565.1\|1370942_1371983_+	elongation factor G	A0A1S5SF82	Streptococcus_phage	1.7e-197	98.3
WP_000336323.1\|1372101_1372269_+	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_001227347.1\|1372328_1372682_-	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000804885.1\|1373186_1373609_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_000857133.1\|1373605_1373836_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000814511.1\|1374296_1374500_+	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_001291561.1\|1374581_1375799_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_000582200.1\|1376361_1376613_-	hypothetical protein	NA	NA	NA	NA
WP_000802831.1\|1377274_1377934_-	RibD family protein	A0A1B0RXM8	Streptococcus_phage	3.1e-125	100.0
WP_072387101.1\|1378044_1378452_-	WYL domain-containing protein	A0A1B0RXM3	Streptococcus_phage	1.1e-59	98.3
WP_001079938.1\|1378424_1378997_-	HTH domain-containing protein	A0A1B0RXM1	Streptococcus_phage	5.5e-102	99.5
1378959:1378973	attR	NA	NA	NA	NA
WP_001096887.1\|1379272_1380067_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_000627290.1\|1380159_1380702_-	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_001255864.1\|1380698_1381607_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	E4ZFP8	Streptococcus_phage	2.0e-167	93.4
WP_000662263.1\|1381639_1382374_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
WP_062810426.1\|1382354_1383224_-	nucleotidyltransferase domain-containing protein	A0A1X9I6C9	Streptococcus_phage	1.5e-151	90.7
WP_002303393.1\|1383238_1383463_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002294514.1\|1385114_1385918_-	lincosamide nucleotidyltransferase Lnu(B)	NA	NA	NA	NA
WP_002294513.1\|1385971_1387456_-	ABC-F type ribosomal protection protein Lsa(E)	A0A2H4UUX5	Bodo_saltans_virus	2.6e-26	26.0

DBSCAN-SWA_4

1391034 : 1404408

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002294505.1\|1391034_1391898_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	A0A1X9I6F2	Streptococcus_phage	8.7e-168	100.0
WP_189283555.1\|1391930_1392884_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	1.1e-136	100.0
WP_189283557.1\|1392913_1393051_-	hypothetical protein	NA	NA	NA	NA
WP_062810425.1\|1393043_1393253_-	helix-turn-helix domain-containing protein	S5MNP8	Brevibacillus_phage	1.9e-12	53.1
WP_062810424.1\|1393398_1394055_-	hypothetical protein	NA	NA	NA	NA
WP_062810423.1\|1394098_1401742_-	DEAD/DEAH box helicase family protein	I3PUW5	Vibrio_phage	4.5e-276	37.7
WP_062810422.1\|1401728_1402694_-	DNA (cytosine-5-)-methyltransferase	D2IZY5	Enterococcus_phage	1.1e-75	49.0
WP_062810421.1\|1402686_1404408_-	DNA topoisomerase 3	A0A2H4UU47	Bodo_saltans_virus	3.1e-07	20.8

DBSCAN-SWA_5

1730600 : 1739448