CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021644	Glaesserella parasuis 29755 chromosome, complete genome	5 crisprs	PD-DExK,DEDDh,WYL,cas3,cas2	7	3	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021644_1

959044-959142

Orphan

Consensus_repeat	Method
CGACATTCGGGAAGAAGCAAAACCGCCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021644_1

>merge|NZ_CP021644|1|959044-959142|CRISPRCasFinder
CGACATTCGGGAAGAAGCAAAACCGCCATTACCCAATGTCACTAATGAACATTCCCCAATGGCGGAAAGCGACATTCGGGAAGAAGCAAAACCGCCATT

>NZ_CP021644|1|1|959044-959142|CRISPRCasFinder
CGACATTCGGGAAGAAGCAAAACCGCCATT	ACCCAATGTCACTAATGAACATTCCCCAATGGCGGAAAG
CGACATTCGGGAAGAAGCAAAACCGCCATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021644.1\|WP_131320163.1\|952974_953418_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714778.1\|964972_965536_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005715017.1\|959559_960231_+\|replication-protein-P	unknown	unknown	gnl\|CDD\|369163
NZ_CP021644.1\|WP_112065003.1\|962624_963833_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NZ_CP021644.1\|WP_005714533.1\|956657_957341_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|119397
NZ_CP021644.1\|WP_020997039.1\|952527_952749_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714536.1\|954689_955529_-\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714537.1\|954371_954662_+\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|188241
NZ_CP021644.1\|WP_016527921.1\|958007_958733_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP021644.1\|WP_005715214.1\|960292_960721_+\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP021644.1\|WP_020997221.1\|952763_952949_+\|YegP-family-protein	unknown	unknown	gnl\|CDD\|377831
NZ_CP021644.1\|WP_005714531.1\|957471_957672_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP021644.1\|WP_035703519.1\|961624_962194_+\|NinG-recombination-protein	unknown	unknown	gnl\|CDD\|368603
NZ_CP021644.1\|WP_020997228.1\|962190_962568_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|368957
NZ_CP021644.1\|WP_005714782.1\|963899_964118_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_035494818.1\|965661_965925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005715065.1\|960754_961168_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_CP021644.1\|WP_005715063.1\|961194_961377_-\|addiction-module-toxin,-HicA-family	unknown	unknown	gnl\|CDD\|377942
NZ_CP021644.1\|WP_005714534.1\|955709_956558_-\|KilA-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|367917
NZ_CP021644.1\|WP_005714539.1\|953865_954312_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021644.1\|WP_005714537.1\|954371_954662_+\|putative-addiction-module-antidote-protein	gnl\|CDD\|188241	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module. [Mobile and extrachromosomal element functions, Other].	1.58436e-38
NZ_CP021644.1\|WP_112065003.1\|962624_963833_-\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.73851e-133
NZ_CP021644.1\|WP_005714533.1\|956657_957341_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	6.85116e-20
NZ_CP021644.1\|WP_005714531.1\|957471_957672_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	2.53347e-10
NZ_CP021644.1\|WP_005715017.1\|959559_960231_+\|replication-protein-P	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	3.72278e-76
NZ_CP021644.1\|WP_016527921.1\|958007_958733_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	7.87983e-14
NZ_CP021644.1\|WP_005715214.1\|960292_960721_+\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	9.31172e-64
NZ_CP021644.1\|WP_020997221.1\|952763_952949_+\|YegP-family-protein	gnl\|CDD\|377831	pfam07411, DUF1508, Domain of unknown function (DUF1508). This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.	3.56922e-05
NZ_CP021644.1\|WP_035703519.1\|961624_962194_+\|NinG-recombination-protein	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	2.88477e-79
NZ_CP021644.1\|WP_020997228.1\|962190_962568_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|368957	pfam06530, Phage_antitermQ, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	0.00199729
NZ_CP021644.1\|WP_005715065.1\|960754_961168_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.77602e-64
NZ_CP021644.1\|WP_005715063.1\|961194_961377_-\|addiction-module-toxin,-HicA-family	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	3.85097e-20
NZ_CP021644.1\|WP_005714534.1\|955709_956558_-\|KilA-N-domain-containing-protein	gnl\|CDD\|367917	pfam04383, KilA-N, KilA-N domain. The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.	2.2788e-23

>NZ_CP021644.1|WP_016527921.1|958007_958733_+|Rha-family-transcriptional-regulator
MKTELLSTNQRENATLTMSSREIARITESRHRDVCLSIRNLMNKGVIGGYAESPYTHEQNGQVYYEYHINKRDTYVIVAQFSPEFTARLVDRWQELEQKQVQQLPSYSEALRQLADKIEESEQKSLQIASMESYFRNGISPFEFVKGLNGVNALKIGAFLVDKNWLYQDGNHKRVKSYARDQYLTEETTEISQHGKDPFVAYKPVLLKKGAAKLYEWYTKRELPMKANWNGVFTQDKVVGL
>NZ_CP021644.1|WP_005714531.1|957471_957672_+|helix-turn-helix-domain-containing-protein
MDLTSYLSDRPRGFKADFAKKLGISKSYLRQVETGYSPMPAYLAKKIEEVTNGEVAKSELRPDLWD
>NZ_CP021644.1|WP_005714533.1|956657_957341_-|helix-turn-helix-transcriptional-regulator
MIKNMTLPEIRRKKLTEWFSTRDIPEKEKSYISQLKSGKSSFGERAARRLENEYGMPSFYLDYDEETESAIVSAISIQETHSHQYPIHLINFKAKAGETGFINTNYPEIIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMAPTINKGDVVFIDTTINYYDNEGVYIFAIDDEVYIKRLQKIPGGVYRALSDNKTYEPFDIKREILDTAIILGKFIRVLPINPKDL
>NZ_CP021644.1|WP_005714534.1|955709_956558_-|KilA-N-domain-containing-protein
MVPNDVIIVQETEIRVTERNGEDYISLTDMCKAFGDGDQLIKNWLQNKNTIEFLQVWEEINNPNFNLVELHQIKNNIGLNRFVMSVKKWSATNAIGLIAKTGRYGSGTYAHKDIALEFGSWLSPEFKLYLIKEFQRLKQKEAQENKTEWNVKRILSKANYRIHTDAIQAHLIPRLLNSTQPIFVYSAEADILNQAMFGLTAKQWREQNPTLKGNIRDYASVEQLTVLAALESQNALLIEQGVSQKERLTILNRLAIQQMQSLLKSKSLEPLKDKPLLIEDRE
>NZ_CP021644.1|WP_005714536.1|954689_955529_-|DUF3800-domain-containing-protein
MHPSRTYIVYLDEFGHVGPYVSVDHPTHKTHPVFGLGGFVLPIEEVRPFSSFFFNLKQYLFENYDIPQARKEAKEQGQVFKLSTWEKKGSKQYSVANLQRYTIHITRSTNRIINQITERGGFLFYVGEAKQKDVDKHDAQRVYLSSLKEIIKRLDDEFKNQEDQFLIFMDDSESSASIVKNAIYEMHQNSKFQLIEAPVQVDSKLYQTIQCADWLCAIYGKLSFYEIEPESKPDYEIFKRYFGDRIAKAQKRSNVRNNLPKKASEKSLKKLCDKFNNHN
>NZ_CP021644.1|WP_005714537.1|954371_954662_+|putative-addiction-module-antidote-protein
MVELQDFDMAEHLRSEEEIQLYLNEVLKEDDVDLILSALGDIAKARNMSQIAREAGVSREGLYKAFSGKGNPTFSTVLKVMRALNLTFEVKQAVHT
>NZ_CP021644.1|WP_005714539.1|953865_954312_-|hypothetical-protein
MPLYENAKALIRQNLTEISQGKKAKLQVIGSFTDKQFLDINQHRKKAELPPLECNEIVYIGRHHYQSRSKDGYNINDMVKQAESALSVHSCLVPSNRATALENPHQRHDGYGNLVNDRAILELTSKKPRAELFSVIPKGDSIKPNDDQ
>NZ_CP021644.1|WP_131320163.1|952974_953418_-|hypothetical-protein
MGLRQTGIAIHSDIYRELEHLTSMRIYLQRTEIGKEMLDKCRYEWQQTEDTAMTKIIIERNPTSNKYCEKAEVRTTGKAGRLARMFAKNRKKQTANTLSRVDIACLERPSKKMIDIANYACNKGKIKPTTVRAKEKIRRSCRELIRI
>NZ_CP021644.1|WP_020997221.1|952763_952949_+|YegP-family-protein
MYFQIFQGVNGQWYWRLCRVLSSGLIDIIATSHQAYSDKSVCEIDIMNVKLTNATTPIRYI
>NZ_CP021644.1|WP_020997039.1|952527_952749_-|hypothetical-protein
MHEKMKCYAVSYSFGGKKWATEIYANSFEEAQEKVKAMSQATVDGEIHLSVYIPENPLSKIARLMRRLLQKGG
>NZ_CP021644.1|WP_005715017.1|959559_960231_+|replication-protein-P
MQNVASMNLKSLVGQEPNYQVPAKTTAIPDGAIRTVNQLFIQLRAIFPAWKNSFPDADSYREAKRIWLETLVNEKITTIEQLQNGIARAKKSKNPFWPSVGEFVEWCKAVDYEALGLPDEDRLYQRLQAFMAFGMEEIQQFKFASTAEYYLITDLYVRNRAGEWSDKQLKDEIKKSLVKMSKRLKTGEVLPEPKLALPQEVKAVNSEKVRAFWGGLLKQVRGF
>NZ_CP021644.1|WP_005715214.1|960292_960721_+|recombination-protein-NinB
MEHKRKYFLRTEKIKNNALEFVKALPIDEKKPLVVEVKPITRNLEQNAKFHAMCGDIAKQVQFNGEWLPLEAWKVLLISAHAEATKEGSCLVTGLEGELVNIRESTAQMSVKRMASLIEYATSWGVSNGVHFNDKWNFWGVK
>NZ_CP021644.1|WP_005715065.1|960754_961168_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLYPIAIEPGDETHAYGVIVPDIPGCFSAGDTLEEAYQNVKEAIVFHLEGLVEDGEEIPMPTSIDNHRKNPDFAEYDFFFGFVDVDISHLLGKAERINITLPSYLIKRIDDFVAVHKEYKNRSNFLAKIAADKILTA
>NZ_CP021644.1|WP_005715063.1|961194_961377_-|addiction-module-toxin,-HicA-family
MDSKTIIKMIEADGWYLVATSGSHHQFKHPTKQGRVTVPHPKKDLKKGTELSILKQAGLK
>NZ_CP021644.1|WP_035703519.1|961624_962194_+|NinG-recombination-protein
MIKPKVKKRKCKCCGGEFKSADSFRKWCSAECGVKLAKIAQEKARQKAIEKRNREERAKIKATRERLKSRSEWLKDAQAVFNEYIRLRDKDEPCISCRRFHQGQYHAGHYRTVKAMPELRFNEDNVHKQCSACNNHLSGNITEYRINLVRKIGVERVEALEGYHPPVKWSAEDCKEIIKTYRAKIKELK
>NZ_CP021644.1|WP_020997228.1|962190_962568_+|sigma-70-family-RNA-polymerase-sigma-factor
MIRLHISIDDILRVWVRRWASHRGCRGYPSLQSFMPEATVKITKYSIDELSEEQYLKLDEAVMTLHDLNLEAYQVLMAVFLQGQDKKNICLEMHISPTTFDNRLRTARDFMEGAVFGSGLIRLKF
>NZ_CP021644.1|WP_112065003.1|962624_963833_-|IS256-family-transposase
MNEKQLHALAAEFAKNLKTPEDLNQFSRMLKKITVEAALNGELTDHLGYEKHQPRKGKNARNGYTSKTVICDEGEIEIETPRDRDGTFEPQLIKKNQTRITGMDEQIIALYSKGLSNQEIVEMFKELYDADVSSSLISRVTDAVKERVMEWQNRPLDAVYPIVYLDCIVVKVRQDGRIINKSVFVALGVNLEGHKELLGLWIAENEGAKFWANVLTELQNRGLKDIFIACVDGLKGFPEAINAVYPKTKIQLCIVHLVRNSLKFVSWKDYKAVTADLKQVYQAPTEAQARENLTALSQKWQTKYPLVAKGWEDNWANIATFFDYPADIRKAIYTTNAVESLNSVIRRVIKKRNVFPTDDSVFKVIWLAIKDASKKWTMPIQNWKLAMNRFMIDFGDRLDDHR
>NZ_CP021644.1|WP_005714782.1|963899_964118_-|hypothetical-protein
MANSMTEHSRKLRSKTANEYNKRMLAEGKVKQFSVRMETPIADEFASVLAEIGGTKAEAIKKLCEIYRQHQA
>NZ_CP021644.1|WP_005714778.1|964972_965536_-|hypothetical-protein
MYFREGYTKFPYRPSNGSEDCQNPTPNAGGIDLVNHPEKIDEILEIAQLPELKTTLIELNKPDSPFITLGCSHWIGKYDNSHFSYIEFTFKDAKIANNFNFLVQLEKDLHLFFIEKLTTGFTKEQRDSYATYLKDQVQVYFRKIQYQDDLELRNLLGLEFHFQDRQMVDFHHKALRHFLTQYLVLPL
>NZ_CP021644.1|WP_035494818.1|965661_965925_+|hypothetical-protein
MRDMGTQTYIWSGFSGIIAWLSEQQNLMILSLAIGIVTACANLYQRCDEGKAKRRERERAEEAHQIRMQIYRVRAERLSNEQAKNTR

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Crispr_ID: NZ_CP021644_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021644_2

1056334-1056711

Orphan

Consensus_repeat	Method
CCAGGACAAGCGGGTCCAGCAGGACCACGAGGACC	PILER-CR
AGGCCCTGCGGGTCCAACGGGACCT	CRT

3 spacers

The CRISPR arrays of NZ_CP021644_2

>merge|NZ_CP021644|2|1056334-1056711|PILER-CR,CRT
GCGGGTCCAGCGGGACCAAAGGGTGAACCGGGTCCTAAAGGTGAACAAGGTATTCCAGGACAAGCGGGTCCAGCAGGACCACGAGGACCGCAGGGAACAGCGGGTGCTCAGGGACCTAAGGGGGATAAAGGCGAACCAGGAGAAGCGGGTCCAGCAGGACCACGAGGCCCTGCGGGTCCTAAAGGAGATGCAGGTCCAAAAGGTGATACAGGTCAGAGAGGTGAAACTGGCTCTGCGGGTCCAACGGGACCTAAGGGTGAACCGGGTCCTAAAGGTGAACAAGGTATTCCAGGCCCTGCGGGTCCAGCGGGACCTAAGGGTGACAAAGGTGATACGGGTCCAGCGGGACCACAAGGTCCTGCGGGTCCAACGGGACCA

>NZ_CP021644|2|1|1056334-1056503|PILER-CR
GCGGGTCCAGCGGGACCAAAGGGTGAACCGGGTCC	TAAAGGTGAACAAGGTATTCCAGGACAAGCGGGTCC
AGCAGGACCACGAGGACCGCAGGGAACAGCGGGTG	CTCAGGGACCTAAGGGGGATAAAGGCGAACCAGGAGAAGCGGGTCC
AGCAGGACCACGAGGCCC

>NZ_CP021644|2|1|1056498-1056711|CRT
AGGCCCTGCGGGTCCTAAAGGAGAT	GCAGGTCCAAAAGGTGATACAGGTCAGAGAGGTGAAAC
TGGCTCTGCGGGTCCAACGGGACCT	AAGGGTGAACCGGGTCCTAAAGGTGAACAAGGTATTCC
AGGCCCTGCGGGTCCAGCGGGACCT	AAGGGTGACAAAGGTGATACGGGTCCAGCGGGACCACA
AGGTCCTGCGGGTCCAACGGGACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021644.1\|WP_005713977.1\|1044168_1044531_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714199.1\|1059684_1061664_-\|exoribonuclease-II	unknown	unknown	gnl\|CDD\|179920
NZ_CP021644.1\|WP_005714341.1\|1052047_1053070_+\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP021644.1\|WP_005714051.1\|1070685_1071312_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	unknown	unknown	gnl\|CDD\|183025
NZ_CP021644.1\|WP_005714346.1\|1050371_1050902_-\|endonuclease-SmrB	unknown	unknown	gnl\|CDD\|235321
NZ_CP021644.1\|WP_005714049.1\|1069654_1070443_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223696
NZ_CP021644.1\|WP_020996973.1\|1065332_1066049_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276961
NZ_CP021644.1\|WP_112065011.1\|1066093_1067302_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NZ_CP021644.1\|WP_005714192.1\|1064406_1065054_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005713981.1\|1046374_1046854_+\|redoxin-family-protein	unknown	unknown	gnl\|CDD\|184456
NZ_CP021644.1\|WP_005714347.1\|1049012_1050230_+\|tyrosine-transporter	unknown	unknown	gnl\|CDD\|185086
NZ_CP021644.1\|WP_005714349.1\|1047650_1048865_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|185086
NZ_CP021644.1\|WP_005714194.1\|1063616_1064390_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|379536
NZ_CP021644.1\|WP_005714197.1\|1061878_1062223_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368831
NZ_CP021644.1\|WP_005714201.1\|1058482_1059574_-\|murein-transglycosylase-A	unknown	unknown	gnl\|CDD\|236866
NZ_CP021644.1\|WP_005714340.1\|1053080_1053677_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP021644.1\|WP_005714195.1\|1062225_1062522_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP021644.1\|WP_035494346.1\|1044634_1045705_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_CP021644.1\|WP_005714344.1\|1050988_1051933_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP021644.1\|WP_005713980.1\|1045706_1046357_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|280792

Protein	Function_ID	Function_description	E-value
NZ_CP021644.1\|WP_005714199.1\|1059684_1061664_-\|exoribonuclease-II	gnl\|CDD\|179920	PRK05054, PRK05054, exoribonuclease II; Provisional.	0
NZ_CP021644.1\|WP_005714341.1\|1052047_1053070_+\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP021644.1\|WP_005714051.1\|1070685_1071312_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	gnl\|CDD\|183025	PRK11188, rrmJ, 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE.	1.44366e-157
NZ_CP021644.1\|WP_005714346.1\|1050371_1050902_-\|endonuclease-SmrB	gnl\|CDD\|235321	PRK04946, PRK04946, endonuclease SmrB.	3.83377e-101
NZ_CP021644.1\|WP_005714049.1\|1069654_1070443_-\|SDR-family-oxidoreductase	gnl\|CDD\|223696	COG0623, FabI, Enoyl-[acyl-carrier-protein].	1.90409e-154
NZ_CP021644.1\|WP_020996973.1\|1065332_1066049_+\|hypothetical-protein	gnl\|CDD\|276961	cd02201, FtsZ_type1, Filamenting temperature sensitive mutant Z, type 1. FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.	4.4525e-11
NZ_CP021644.1\|WP_112065011.1\|1066093_1067302_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.03449e-132
NZ_CP021644.1\|WP_005713981.1\|1046374_1046854_+\|redoxin-family-protein	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	2.002e-34
NZ_CP021644.1\|WP_005714347.1\|1049012_1050230_+\|tyrosine-transporter	gnl\|CDD\|185086	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional.	7.0239e-126
NZ_CP021644.1\|WP_005714349.1\|1047650_1048865_+\|amino-acid-permease	gnl\|CDD\|185086	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional.	4.75958e-137
NZ_CP021644.1\|WP_005714194.1\|1063616_1064390_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|379536	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	6.92647e-28
NZ_CP021644.1\|WP_005714197.1\|1061878_1062223_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	0.00306029
NZ_CP021644.1\|WP_005714201.1\|1058482_1059574_-\|murein-transglycosylase-A	gnl\|CDD\|236866	PRK11162, mltA, murein transglycosylase A; Provisional.	0
NZ_CP021644.1\|WP_005714340.1\|1053080_1053677_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.31235e-39
NZ_CP021644.1\|WP_005714195.1\|1062225_1062522_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	8.31769e-15
NZ_CP021644.1\|WP_035494346.1\|1044634_1045705_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	1.17852e-172
NZ_CP021644.1\|WP_005714344.1\|1050988_1051933_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	0
NZ_CP021644.1\|WP_005713980.1\|1045706_1046357_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	2.0444e-53

>NZ_CP021644.1|WP_005714340.1|1053080_1053677_+|DedA-family-protein
MELLIEFFSSYGYWAVFLVLLACGFGLPIPEDITLVSGGVISGLGYTNVHWMLFVSMLGVLVGDSTMYWLGRIYGEKILQFPLIRRIATPERFATVQERFEKQGWKLLFVARFLPGLRAVVYLVSGITRRVTFTRFVLVDFFAAIISVPIWVYLGDFGAKNLDWLHQQIQKGQMAIWLMLLIGVAIVFWKWKKSHKVN
>NZ_CP021644.1|WP_005714341.1|1052047_1053070_+|HTH-type-transcriptional-repressor-PurR
MATIKDVAKLVGVSTTTVSHVINKTRFVAEDTTKAVWEAIASLNYSPSAVARSLKVNTTKSIGMIITTSEAPYFAEIVLAVEEYCYRQGYSLFLCNTQNDAEKVQNHLDMLIKKRVDGILVMCSEYTENSLALFNGTNVPMVVMDWGPNDGKSDRIIDHCLDGGYMATKHLIDNGHRDIAIIAGYLYKTTAKARYDGFVKAMTEAGLLIRKEWIFENDFQPEGGYESMNNLLNQDKLPTAVICGCDAMALGVISAITEKGLSVPQDISVIGYDNIHSSRFYAPPLTTIHQSKTRLGQMAIDTLLERIQQHNEQPSEPVTPKVLEFYPELVVRSSVRNLNQ
>NZ_CP021644.1|WP_005714344.1|1050988_1051933_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MYEHNLELLDEIASSPVADDLATILDMMRWAYSYFNASDLYYGHGHDNAWDEANQLVLTSLALPMDVPETLYASRLTRVEKERIIEMVEQRLGLRKPVAYLTNSAWFSGLEFYVDERVIVPRSPIGELIQQGFTGILRAEPKRILDMCTGSGCIAIACADKFPNAEIDAVDLSVDALNVAEINIERHNMAHRVFPFQSDLFDDLPQDRYDLIVTNPPYVDQEDLDDMPEEFHHEPEMALGSGVDGLDITKRILAQAADFLSDNGVLVCEVGNSMVHLIEQFPSVPFHWLEFKNGGLGVFSLTREQLVANRHLFF
>NZ_CP021644.1|WP_005714346.1|1050371_1050902_-|endonuclease-SmrB
MLENDELALFREAIKGTKKIKQDTFVPKVEPRKKINEIRELKEKADTLFYFSDEYEPLLTEENDKVKYRREDVDPYILKQLRRGDFHPELFLDLHGLTKENAKKELASLILACEREGIYCASIMTGYGTRALKYQIPRWLVQHPKVIALHQAPREWGGNSAILILIEQPEKLDKKR
>NZ_CP021644.1|WP_005714347.1|1049012_1050230_+|tyrosine-transporter
MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGMTLVLLVGLWLLLTYTGLLFMEVYQTAAQQDVGVATLAEQYFGMPGRVLATVCLLVLLYALLAAYITGGGSLVSGLLPEMGEGDTTLKVSILLFTFILGAFVVVGIKGVDGLTRVLFIGKIVAFVFVLLMMFPKAKLENLTAVPLDNLLVISAIPIFFTSYGFHVIMGSINSYLDADIRKIRIAVIIGTVIPLGAYLLWQLATHGVLSQGEFVTLLNQDPTLNGLVKATSQITGSTILGEMVRIFSALALITSFLGVAMGIFEGVGDLLKRVNLPANRAILTPLTFIPPLAFALFYPNGFIAALGYAGLLFAFYGLILPIGLAWKVRQAHPNLPYRVAGGSIGLILAFIMGIVIIVIPFLMQNGILPTVAG
>NZ_CP021644.1|WP_005714349.1|1047650_1048865_+|amino-acid-permease
MKNKTLGSTLIVAGTTIGAGMLAMPLTSAGIGFGFTFLLLVALWLLLCFSALLFVEVYQTVDSDAGLGTLAEKYYGPFGRIVSTTVLIVFLYAILSAYVSGGSSLLAVFLPTIIDAETTTRISGVIFTVVFGIFIILGTTSVDAVNRLLFTTKILAFILVLFLLLPKVSIDNLMAMPIDNALLISASPIFFTAFGFHGSIPSLNKYLEGNVKALRISIVVGTSIPLIAYILWQLATHGVLTQTEFLQILEKDPTLNGLAEAARQITGSSIIGAMVRIFSVLALITSFLGVALGLFEALEDLLKRVNINAGRVSLGALTFIPPMLFAFFYPQGFIAALGYAGQMFAFYAIVLPIAMVWKLRRQNLNLPYQVKGGSISLLLALLIGVFIVMVPFLIESGWLPKVVG
>NZ_CP021644.1|WP_005713981.1|1046374_1046854_+|redoxin-family-protein
MKKIMGLLLMLFSFNAFAEENKNLADIQFKDLDNNIVSLEKYKGKNVYVKMWASWCPICLAGLAEIDDLSADQNKNFEVITIVSPDKKGEKSTEKFVEWYKGLDYKNVVVLLDEQGEVLKRAKVRGYPSNVFLDSELNVKKVVPGHLSTTQITESINSK
>NZ_CP021644.1|WP_005713980.1|1045706_1046357_+|cytochrome-c-biogenesis-protein-CcdA
MFDQNLLISSVFLAGLASFLSPCIFPIVPIYFGILSKGGKKVLNTLLFIMGLSLTFVSLGFSFGFLGDLLLNDITRVIAGIIVIILGIHQLGIIKINFLEQTKLVEIKTNGKSASVEAFVLGLTFSLGWTPCIGPILASVLALSGDEGSALYGGAMMFVYVLGLALPFIIFSFFSDELLKRAKSLNKHLDKFKIIGGTLIILMGLLLITNNLHSFM
>NZ_CP021644.1|WP_035494346.1|1044634_1045705_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKSHKTVLFTLIMSAISNNSLAINHTNNSSKEMSKMTQTQNENIREIYLAGGCFWGIEAYMERIYGVKNATSGYANGKTDKTHYHIIGKTDHAETVHITYDANKISLEKLLKYYFQVIDPTSLNKQGNDRGRQYRTGIYYQNEQDKAIILKEIEALQTKYKDKIQVEVEPLKHYILAEEYHQDYLKKNPNGYCHIDLEQANNIIIDPKDYPKPSDEELKAKLTPLQYSVTQKKNTERSFSNEYWDNKKDGLYVDITTGEPLFSSRDKYDSGCGWPSFTKPIDKNVVTYQKDTSFNMIRTEVLSRSGKAHLGHVFDDGPQDKGGLRYCINSAAIKFIPLEQMEKENYGYLINLIKGK
>NZ_CP021644.1|WP_005713977.1|1044168_1044531_+|hypothetical-protein
MKTLLKVLMTTSLVSIATINTANAEMMDDCKNKMRADCQTMENMKHSEMKKNHMMKSDDMKKDGMMKSDDMKKDGMMKSDDMKKDGMMKSDDMKKDGMMKSDDMKKDHMMKSDKMKEEKM
>NZ_CP021644.1|WP_005714201.1|1058482_1059574_-|murein-transglycosylase-A
MFYKTYSKIILLSTLTLFTACSTKISEQPNTEITKLGAKFHQRKFIPSNVPLVNISDIQINNNIVNQKDFLQQLAHIQNHSTNLMKHHVKTYNKLFTWLSHGGKIKDLKHYGVQIQQMRGQDGYQNVLMTGYYIPVIPARIRPEGEFHHPLYAIPKGNKKYSRAQIYRGALAGKGLELAYTNSMLENFLMEVQGSGFVDIGGGRLHHLAYGDKNGYAYTSIGRLLVEDGEIAKENISIQAIRKWSKENPHRLQSLLERNNSFVYFRRDPTLEVKGSARVPLVPLASVASDKRLIPTGSVLLIEMPILDHNGNWNGRHEFRLMVALDVGGAVKGQHFDLYQGIGHQAGQKAGHMKHYGRAWLLN
>NZ_CP021644.1|WP_005714199.1|1059684_1061664_-|exoribonuclease-II
MFQNNPLLAQLKQQIEASKEYVEGVVKTSDKSYGFLECEKNSYFIPPVEMKKVMHGDKVKAVVKRDGDKEQVEIDSLLEPMLERFIAQVRFNKDGKLQLAVDHPSINNFIPANTQKKVTETLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKADDNFAPWWVTLARHEQPREPVANEKSYELQDQVEREDLTHLYFTTIDSASTKDMDDALYVEPISENGTQTGWRLVVAIADPTAYIPEQSAIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVGYIETDLSGNVVGEARFVSAWVQSKARLVYDEVSDYLEKVENHWTPDCTETAQQIDWLHQFTLARIDWRSKNALLFKEQGDYSFELAEDGAVKAIHIDYRRIANQMIEEAMIIANICAAQFLDKYAHTGVFNTHSGFDSKNLEPARKFLLDTLSNDENRESLSERYSPERLSTLEGYCEMRRDIEQFPENFLEMRLRRYLTFAEFKATSAPHLGLGISHYATWTSPIRKYGDMVNHRLIKQVLANQTAKPVEETVLARLQEARKQNRMVERDIADWLYARYLAPMVEQNVEFDGEIHDVSRGGLRVKVIENGASIFVPFSTLHNNKEEMLFSPEEIALYIKGEKAYQIGQAVKVKLKEVRVETRSVVGDVLI
>NZ_CP021644.1|WP_005714197.1|1061878_1062223_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
METEEYLTFIETKVFEEDRKALMSDDEYQKFQAYLLESHELGDFIQNTGGCQKIRWKLESNNKGKSGGVRVIYYVVTKQGKLLLMMMYAKSKQDNMSDKQKAMLKAVVSQLSEE
>NZ_CP021644.1|WP_005714195.1|1062225_1062522_+|helix-turn-helix-domain-containing-protein
MEKELFERLMESAREMVAIEKGEIEVPPHRIHIHKIPNVKAIRTQHQMKQAEFASLLGVSQNLVQSWEIGRRAPNGAARKLLAIIEQQPELIPVLQGL
>NZ_CP021644.1|WP_005714194.1|1063616_1064390_+|PD-(D/E)XK-nuclease-family-protein
MHLSVNFNQDKDKTLDIAQLATFFKMWKEGVFLEPSEEKKELVIPDREKLQYFFNKYKEARVPMEEEKALGMKVNVWKTANLGRYEVRNSKVLRWFLDMHEDHGQGSFFLKALYDSLGWDKSSFPFPSVYRATEECCPLGDESERVDIEIESDEVLLFIEVKIDALEGKEQLKRYHDVAKIKAGSREWKIIYLTKDGIVKYDQEDKQSLSDKEKIIGLSWTHFAKVLQKQIRQELRKNPNNRSLWLAEQFVEHILTF
>NZ_CP021644.1|WP_005714192.1|1064406_1065054_+|hypothetical-protein
MSRQAAFKLIIENIQMFDEASHLINDDFDSELFNAVDNVIKEFEFDFECKGKFNSAENRFSTFYPSYWLANSSDDTDANNCYAHYYFGFECDETGKNIHYWGITSLFSKVGGMVLGFYSWKKQFPKCGNKDWKEFMIEQNKKYPELGKLGFKFNTKGYDFYLPIKSLDPKLVIENYPDSLEDAMEPIRDALKTLKEAHPIFNEIVEAAKKKFGTN
>NZ_CP021644.1|WP_020996973.1|1065332_1066049_+|hypothetical-protein
MSKKVQFTGIGLQGNEFVKNHENSPLVTSFHYIEQLTEVMAVDTEAFSLLFVENNERDLQLCYQFAKSFQFDCLSVVVLPTRRESLHSNCHKWLLDLEKRIDILIALNKPLPVDCMLLKETDLFDAITVIIDLISENNLINVDVEDIKTVSYGAKEIDFYSFEIERKRETISADDVITHLLSKSHKKIKEINGAVISITSDENLLLDEYHMIMESISSLISEDCTIIASTNEPLPQFV
>NZ_CP021644.1|WP_112065011.1|1066093_1067302_+|IS256-family-transposase
MNEKQLHALEAEFAKNLKTPEDLNQFSRMLKKITVEAALNGELTDHLGYEKHQPRKGKNARNGYTSKTVICDEGEIEIETPRDRDGTFEPQLIKKNQTRITGMDEQIIALYSKGLSNQEIVEMFKELYDADVSSSLISRVTDAVKERVMEWQNRPLDAVYPIVYLDCIVVKVRQDGRIINKSVFVALGVNLEGHKELLGLWIAENEGAKFWANVLTELQNRGLKDIFIACVDGLKGFPEAINAVYPKTKIQLCIVHLVRNSLKFVSWKDYKAVTADLKQVYQAPTEAQARENLTALSQKWQAKYPLVAKGWEDNWANIATFFDYPADIRKAIYTTNAVESLNSVIRRVIKKRNVFPTDDSVFKVIWLAIKDASKKWTMPIQNWKLAMNRFMIDFGDRLDDHR
>NZ_CP021644.1|WP_005714049.1|1069654_1070443_-|SDR-family-oxidoreductase
MGFLAGKRILVTGLASNRSIAYGIAKAMKAQGAELAFTYLNDKLQPRVEEFAKEFGSDIVLPLDVATDESITNCFAELSKKWEKFDGFVHAIAFAPGDQLDGDYVNAATREGYRIAHDISAYSFVAMAQAARPFLNKDAALLTLSYLGAERAIPNYNVMCLAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLAAFEQTAALRRTVTIEDVGNSAAFLCSDLASGVTGEVLHVDAGFSITAMGELGEE
>NZ_CP021644.1|WP_005714051.1|1070685_1071312_+|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE
MDRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKHGMTVVDLGAAPGGWSQYVVTQIGDKGRVIACDILDMNPIVGVDFLQGDFCEESVLNALLERVGEGKVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLREIRSLFNVVKVRKPEASRDRSREVYIVATGYKG

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Crispr_ID: NZ_CP021644_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021644_3

1184486-1184584

Orphan

Consensus_repeat	Method
CGACATTCGGGAAGAAGCAAAACCGCCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021644_3

>merge|NZ_CP021644|3|1184486-1184584|CRISPRCasFinder
CGACATTCGGGAAGAAGCAAAACCGCCATTACCCAATGTCACTAATGAACATTCCCCAATGGCGGAAAGCGACATTCGGGAAGAAGCAAAACCGCCATT

>NZ_CP021644|3|2|1184486-1184584|CRISPRCasFinder
CGACATTCGGGAAGAAGCAAAACCGCCATT	ACCCAATGTCACTAATGAACATTCCCCAATGGCGGAAAG
CGACATTCGGGAAGAAGCAAAACCGCCATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021644.1\|WP_112065016.1\|1178313_1178955_-\|DUF3560-domain-containing-protein	unknown	unknown	gnl\|CDD\|371890
NZ_CP021644.1\|WP_005714692.1\|1187224_1187590_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368957
NZ_CP021644.1\|WP_016527566.1\|1185734_1186163_+\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP021644.1\|WP_005714943.1\|1182887_1183112_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP021644.1\|WP_005714695.1\|1187557_1187752_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005715017.1\|1185001_1185673_+\|replication-protein-P	unknown	unknown	gnl\|CDD\|369163
NZ_CP021644.1\|WP_040978505.1\|1186656_1187235_+\|NinG-recombination-protein	unknown	unknown	gnl\|CDD\|368603
NZ_CP021644.1\|WP_005714705.1\|1189898_1190363_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714998.1\|1177608_1177797_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183272
NZ_CP021644.1\|WP_005714819.1\|1180613_1181078_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_020997039.1\|1179372_1179594_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_035490314.1\|1186159_1186513_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_131320163.1\|1179805_1180249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714422.1\|1188053_1188239_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005715000.1\|1177908_1178241_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714703.1\|1189726_1189906_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714942.1\|1182074_1182767_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP021644.1\|WP_005714821.1\|1181061_1182009_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021644.1\|WP_005714700.1\|1188807_1189497_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NZ_CP021644.1\|WP_010786728.1\|1179608_1179779_+\|DUF1508-domain-containing-protein	unknown	unknown	gnl\|CDD\|377831

Protein	Function_ID	Function_description	E-value
NZ_CP021644.1\|WP_112065016.1\|1178313_1178955_-\|DUF3560-domain-containing-protein	gnl\|CDD\|371890	pfam12083, DUF3560, Domain of unknown function (DUF3560). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.	2.63135e-41
NZ_CP021644.1\|WP_005714692.1\|1187224_1187590_+\|hypothetical-protein	gnl\|CDD\|368957	pfam06530, Phage_antitermQ, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	1.70753e-10
NZ_CP021644.1\|WP_016527566.1\|1185734_1186163_+\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	1.33173e-63
NZ_CP021644.1\|WP_005714943.1\|1182887_1183112_+\|hypothetical-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	1.18824e-07
NZ_CP021644.1\|WP_005715017.1\|1185001_1185673_+\|replication-protein-P	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	3.72278e-76
NZ_CP021644.1\|WP_040978505.1\|1186656_1187235_+\|NinG-recombination-protein	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	8.24568e-79
NZ_CP021644.1\|WP_010786728.1\|1179608_1179779_+\|DUF1508-domain-containing-protein	gnl\|CDD\|377831	pfam07411, DUF1508, Domain of unknown function (DUF1508). This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.	2.64791e-19
NZ_CP021644.1\|WP_005714942.1\|1182074_1182767_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	8.47694e-22
NZ_CP021644.1\|WP_005714700.1\|1188807_1189497_+\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	1.37306e-37
NZ_CP021644.1\|WP_005714998.1\|1177608_1177797_+\|hypothetical-protein	gnl\|CDD\|183272	PRK11675, PRK11675, LexA regulated protein; Provisional.	0.00387543

>NZ_CP021644.1|WP_005714943.1|1182887_1183112_+|hypothetical-protein
MEELKHFLNSLSLKEQRDFAERCGTTLGYLRKSISKKSILGAEICVAIERESKGEVTRKHLVPHWEFRWPELIE
>NZ_CP021644.1|WP_005714942.1|1182074_1182767_-|helix-turn-helix-transcriptional-regulator
MRDIREIRRKKLKDLIDDVSGGNIADFARKIDKEPSYVARMLYPEGKPGAKPIGEKMAHHILHKFVLPLDWFNRDYDDEGELIPFEEPSIVIDVLNVEASAGNGSTGDLVEIVSKLHYVPEQFYLYFRGIDPENIRVINIKGDSMAPTFSSGDMIFIDISIPYFDGDGVYVFTYKNNLYVKRLQMAGDHLIVISDNETYKEWEINEESIEQLYIHGKVKVHQSQKLNFIG
>NZ_CP021644.1|WP_005714821.1|1181061_1182009_-|hypothetical-protein
MNKQVKLRAFEIVNNTVSKPLQIAVLLKQKLDNSQSSNERRMLLSEDDPKKEEDLISHFNTEKDQLVFATMLRIAPGDNVQHIDEKLFQKANFSISDLLNTKLNTSAIYKNHYYFLLSNRFVVTNLPGRTTITRLQTYLNWLLNELIELNPVIELKEEYDLSNIRSFVIQDPNNDNSVNLDATQQDNSGSSMVSRFKDITHLAVEHIKEFFVDAEDFDDIDFSQLVSAKLLIQIKKPTKNSPDQIKKVFSAMLKPVSDLDNISFKTRNGTSVTGSELQRTKQVEVDTTDTGKLNEQTLFQQMELFIKELENAGKN
>NZ_CP021644.1|WP_005714819.1|1180613_1181078_-|hypothetical-protein
MQVKIKWIVVSLTTLVGALVLSSLYTPEEGVYKAVVPTIYTLSGIMFSIGMGIVCTFNPSAIKNPQIFKRVKENIANVRNSFLMYFSLATITFLISQIVHSHTLSAIELTIIFNPETVALLFSLISLIYFIINFLTIQKLIFDIAEKVMKEEQT
>NZ_CP021644.1|WP_131320163.1|1179805_1180249_-|hypothetical-protein
MGLRQTGIAIHSDIYRELEHLTSMRIYLQRTEIGKEMLDKCRYEWQQTEDTAMTKIIIERNPTSNKYCEKAEVRTTGKAGRLARMFAKNRKKQTANTLSRVDIACLERPSKKMIDIANYACNKGKIKPTTVRAKEKIRRSCRELIRI
>NZ_CP021644.1|WP_010786728.1|1179608_1179779_+|DUF1508-domain-containing-protein
MYFQIFQGVNGQWYWRLKSANHETIASSEGYTTKQNCLHCIGLVMDTTQKTPVYEV
>NZ_CP021644.1|WP_020997039.1|1179372_1179594_-|hypothetical-protein
MHEKMKCYAVSYSFGGKKWATEIYANSFEEAQEKVKAMSQATVDGEIHLSVYIPENPLSKIARLMRRLLQKGG
>NZ_CP021644.1|WP_112065016.1|1178313_1178955_-|DUF3560-domain-containing-protein
MNTYAKFCPNVFLAKCQEQHEKNEIITVTSKYGNETEVEIHNLVKQQGGFYFYSFVRCDGLDSQARATAKAQRYQEYADNAAKRSNQYCEAANEGRDFLSLAEPIKIGHHSEKQHRALIERNAKRMDKAVEEMKKAESYADKIAYWESMAEKIDLSMPESLEYFKHKLKEAEDKHSDLKKFPEKREHSYSLTYAKKSVNEFKEKVRLAELLWA
>NZ_CP021644.1|WP_005715000.1|1177908_1178241_+|hypothetical-protein
MWEALIASLFSLLKEHFDHIIMRITTWCLSFILCWLYLPLSFKYGLEARPLPALPSYALVYLFYLTAATAFWQGFFIFLDIMGLIIEKIVKCKAIQPQANRVKVDKQQEK
>NZ_CP021644.1|WP_005714998.1|1177608_1177797_+|hypothetical-protein
MALSRTEINARSEAKRGIVTKSFKIHQSVSEQIDRLAVELGISKGKVLEQAIELFEQSQKGA
>NZ_CP021644.1|WP_005715017.1|1185001_1185673_+|replication-protein-P
MQNVASMNLKSLVGQEPNYQVPAKTTAIPDGAIRTVNQLFIQLRAIFPAWKNSFPDADSYREAKRIWLETLVNEKITTIEQLQNGIARAKKSKNPFWPSVGEFVEWCKAVDYEALGLPDEDRLYQRLQAFMAFGMEEIQQFKFASTAEYYLITDLYVRNRAGEWSDKQLKDEIKKSLVKMSKRLKTGEVLPEPKLALPQEVKAVNSEKVRAFWGGLLKQVRGF
>NZ_CP021644.1|WP_016527566.1|1185734_1186163_+|recombination-protein-NinB
MEHKRKYFLRTEKIKNNALEFVKALPIDEKKPLVVEVKPITRNLEQNAKFHAMCGDIAKQVQFNGEWLPLEAWKVLLISAHAEATKEGSCLVTGLEGELVNIRESTAQMSVKRMASLIEYATSWGVSNGVHFNDRWNFWGVK
>NZ_CP021644.1|WP_035490314.1|1186159_1186513_+|hypothetical-protein
MMEIKSFSFGKLIADLAIVGGFVYSHLYLTDSAVVNVYIWAFWAFSILTLMSAFIKPTKFLFTENRAKQMIISELTISLVLVYFGYPVLATVGFISTLAYAGCRTVKNNKKTGKHNE
>NZ_CP021644.1|WP_040978505.1|1186656_1187235_+|NinG-recombination-protein
MIKPKVKKRKCKCCGGEFKSADSFRKWCSAECGVKLAKIAQEKARQKAIEKRNREERAKIKATRERLKSRSEWLKDAQAVFNEYIRLRDKDEPCISCQRFHQGQYHAGHYRTVKAMPELRFNEDNVHKQCSACNNHLSGNITEYRINLVRKIGVERVEALESYHPPVKWSAEDCKEIIKTYRAKIKGLNNAN
>NZ_CP021644.1|WP_005714692.1|1187224_1187590_+|hypothetical-protein
MQIDVKRVLMLWGGYVRFTDCKGYPTMQSFMRESPEMRTKRRYLARLDDDTLEKVDIQIRYLEQHFPKQFDLLFFRYVCGYEPNQVWRKLSLSKGSYENELRLAERFVEGALVGSQISLLL
>NZ_CP021644.1|WP_005714695.1|1187557_1187752_-|hypothetical-protein
MKLSINEIKARSDEKRGVKAKSYKLSVETIALIEQLARERNIPQNQLIKLAVERLQEQANLTTN
>NZ_CP021644.1|WP_005714422.1|1188053_1188239_-|hypothetical-protein
MAMTRAEINAKSDKKRGVRVQSYKLHEEVITLLAELSEQTGLSKTQIITQGIKLFAEQNKA
>NZ_CP021644.1|WP_005714700.1|1188807_1189497_+|hypothetical-protein
MTNQTQLSTFNFEQSSIRVIAVNNEPWFVAKDVCDTLGIKNPTQALENLDEDERAMFNIGLDQRVNFDNRVSEINIVSESGMYTLILRCRDAVKKGSVPHRFRKWVTAEVLPQIRKTGRYQATERPQPKEQEFTHTLKNSEAVDLAWLWFEAEQMVNFIGKITPALEVLGSHLAPTAHSIRAEYGSHIKHVGKLVYRLSVDADFERNPRPMTELRNSLKQNAIAVRRNF
>NZ_CP021644.1|WP_005714703.1|1189726_1189906_+|hypothetical-protein
MEITLGDKIKINGEEVPGYLLKALYEDLKMKFKSDEIEVSDIIHGQHIASSGIKTSSFT
>NZ_CP021644.1|WP_005714705.1|1189898_1190363_-|hypothetical-protein
MIKARISRQQILNNIPEQYRHYFNIAISDIDQDLYPLFKNFTDAANILCKFAHINKKIDIVFYTELEPTLKTKTASLNIALINKDTIHFYVGQTIFYNLDKAIQYPNEVQITAYLEELVHVFMNVNDEVLVKEIVSSMYEGVTYNKEKDIYKFK

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Crispr_ID: NZ_CP021644_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021644_4

1287627-1287729

Orphan

Consensus_repeat	Method
AAATCAAAAATACGTGAAAAACGTTGATAACGGACACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021644_4

>merge|NZ_CP021644|4|1287627-1287729|CRISPRCasFinder
AAATCAAAAATACGTGAAAAACGTTGATAACGGACACACTGCGTGTGTCCGAAAAATATCAATGAAATCAAAAATACGTGAAAAACATTGATAACGGACACAC

>NZ_CP021644|4|3|1287627-1287729|CRISPRCasFinder
AAATCAAAAATACGTGAAAAACGTTGATAACGGACACAC	TGCGTGTGTCCGAAAAATATCAATG
AAATCAAAAATACGTGAAAAACATTGATAACGGACACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021644.1\|WP_005713670.1\|1290790_1292116_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP021644.1\|WP_005712462.1\|1279972_1283137_-\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP021644.1\|WP_005713668.1\|1292588_1293365_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP021644.1\|WP_005712458.1\|1284451_1285828_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341167
NZ_CP021644.1\|WP_005713663.1\|1295717_1296410_+\|16S-rRNA-pseudouridine(516)-synthase-RsuA	unknown	unknown	gnl\|CDD\|236774
NZ_CP021644.1\|WP_005712464.1\|1278843_1279938_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235064
NZ_CP021644.1\|WP_005712471.1\|1276471_1277875_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP021644.1\|WP_005713666.1\|1293464_1294190_+\|response-regulator	unknown	unknown	gnl\|CDD\|182864
NZ_CP021644.1\|WP_005713671.1\|1290463_1290727_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NZ_CP021644.1\|WP_005712460.1\|1283816_1284455_-\|abortive-infection-family-protein	unknown	unknown	gnl\|CDD\|379577
NZ_CP021644.1\|WP_005713674.1\|1288912_1289995_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NZ_CP021644.1\|WP_005712467.1\|1278318_1278579_-\|DinI-like-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP021644.1\|WP_080513235.1\|1278052_1278325_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130682
NZ_CP021644.1\|WP_005713665.1\|1294258_1295635_+\|envelope-stress-sensor-histidine-kinase-CpxA	unknown	unknown	gnl\|CDD\|236532
NZ_CP021644.1\|WP_005714915.1\|1287902_1288874_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP021644.1\|WP_005713662.1\|1296410_1297607_+\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182964
NZ_CP021644.1\|WP_005713672.1\|1290059_1290467_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350220
NZ_CP021644.1\|WP_035703135.1\|1285820_1287461_-\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|280533
NZ_CP021644.1\|WP_051148003.1\|1273915_1276258_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NZ_CP021644.1\|WP_005712473.1\|1272143_1273643_-\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|182781

Protein	Function_ID	Function_description	E-value
NZ_CP021644.1\|WP_005713670.1\|1290790_1292116_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP021644.1\|WP_005712462.1\|1279972_1283137_-\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP021644.1\|WP_005713668.1\|1292588_1293365_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.90755e-137
NZ_CP021644.1\|WP_005712458.1\|1284451_1285828_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341167	cd17278, RMtype1_S_LdeBORF1052P-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Lactobacillus delbrueckii subsp. bulgaricus S subunit (S2.LdeBORF1052P) TRD2-CR2. The recognition sequence of Lactobacillus delbrueckii subsp. bulgaricus S subunit (S2.LdeBORF1052P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.45121e-56
NZ_CP021644.1\|WP_005713663.1\|1295717_1296410_+\|16S-rRNA-pseudouridine(516)-synthase-RsuA	gnl\|CDD\|236774	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA.	2.94574e-126
NZ_CP021644.1\|WP_005712464.1\|1278843_1279938_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235064	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated.	0
NZ_CP021644.1\|WP_005712471.1\|1276471_1277875_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP021644.1\|WP_005713666.1\|1293464_1294190_+\|response-regulator	gnl\|CDD\|182864	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR.	1.61699e-102
NZ_CP021644.1\|WP_005713671.1\|1290463_1290727_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	9.86246e-10
NZ_CP021644.1\|WP_005712460.1\|1283816_1284455_-\|abortive-infection-family-protein	gnl\|CDD\|379577	pfam14355, Abi_C, Abortive infection C-terminus. This domain is found at the C-terminus of the Lactococcus lactis abortive infection protein Abi-859. This protein confers bacteriophage resistance.	1.11026e-11
NZ_CP021644.1\|WP_005713674.1\|1288912_1289995_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NZ_CP021644.1\|WP_005712467.1\|1278318_1278579_-\|DinI-like-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	0.000151185
NZ_CP021644.1\|WP_080513235.1\|1278052_1278325_+\|hypothetical-protein	gnl\|CDD\|130682	TIGR01621, Uncharacterized_RNA_pseudouridine_synthase_HI_0042, pseudouridine synthase Rlu family protein, TIGR01621. This model represents a clade of sequences within the pseudouridine synthase superfamily (pfam00849). The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences modeled here are most closely related to RluA. Neisseria, among those species hitting this model, does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity. [Protein synthesis, tRNA and rRNA base modification].	1.82755e-15
NZ_CP021644.1\|WP_005713665.1\|1294258_1295635_+\|envelope-stress-sensor-histidine-kinase-CpxA	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	0
NZ_CP021644.1\|WP_005714915.1\|1287902_1288874_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.76938e-29
NZ_CP021644.1\|WP_005713662.1\|1296410_1297607_+\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182964	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP021644.1\|WP_005713672.1\|1290059_1290467_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.47215e-46
NZ_CP021644.1\|WP_035703135.1\|1285820_1287461_-\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	9.37961e-159
NZ_CP021644.1\|WP_051148003.1\|1273915_1276258_+\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	1.83707e-40
NZ_CP021644.1\|WP_005712473.1\|1272143_1273643_-\|exopolyphosphatase	gnl\|CDD\|182781	PRK10854, PRK10854, exopolyphosphatase; Provisional.	0

>NZ_CP021644.1|WP_035703135.1|1285820_1287461_-|type-I-restriction-modification-system-subunit-M
MAENLANQQAFLNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQDIIKQRYTDPTSDFYLDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTFKGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVEESILLGLIDLFSDTNFTRPTLDGKQISLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKGRIYDPAMGSGGFFVQTERFIREHQGNVSEVSIFGQEFNPTTWKLAAMNMAIRGIEFDFGKGNADTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQDPRWQYGIPPEGNANFAWLQHMIYHLSPNGRMALLLANGSMSSNTNNEGEIRKNILKADLVEAMIALPSQLFTNTQIPACIWILNKNKARKGEVLFIDARQLGYMKDRVLRDFTADDIAKVADTYHSWQQSADYQNIPAFCYTASLDEIAQNDFVLTPGRYVGAAEQEDDGVPFAEKMQELTALLQQQFKQSAELEAKIKANLGGLGYE
>NZ_CP021644.1|WP_005712458.1|1284451_1285828_-|restriction-endonuclease-subunit-S
MSKLGDFVRVQGGYAFKSSELSDDKTGVPVIKIGNITGGSFVDLSNYQSVSFQLFEKTKSFATKDNDILIAMTGANVGKTSRVPVNSDAYLINQRVGRFLLKEDCPYTSDFIYYVVSSKQAYQYFSRVADGAAQPNISGKTIEDLEFPNIDSRCANKIGNILKSLDDKIQLNTQINQTLEQIAQTIFKSWFIDFDPVHAKANALASGQTAEQATQAAMAVISGKNTQELHRLQTANPEQYQQLWEITEAFPSGFDEEGVPRGWEQTTLSEVCSMKNGYAFKSSDWTEEGIPVIKIGSVKPMIVEVDGNGFVDEEHSVLHSEFLLTEGDIVVGLTGYVGEVGRIPQGRTAMLNQRVAKFIPNKLNEQQDYYSFVYCLVRDKSFKAFAETNAKGSAQANISTKELLNYSIILASPEIQMKFESLIKPLLDKILVNSGNNEYLSKVRDLLLPNLLSGEIHL
>NZ_CP021644.1|WP_005712460.1|1283816_1284455_-|abortive-infection-family-protein
MMKWLLSSIDKLPSLLVYQRHISEIENNICRNPVLSIELCKSLSEGICKTILTDKGVSIPDNFPNLVSTTLSHLNVDNHPDAEHIKELSKRLGGVLHYIATIRNDCNYASHGQDIEHKPVSSDLALFVTHTTNAILGFILHFYIVTGDYQRGERIRYEDYQEFNDYLDEVYESNMGKIISFSRALFDQDIEAYKEEFWEYQRIEYEGLQDTL
>NZ_CP021644.1|WP_005712462.1|1279972_1283137_-|type-I-restriction-endonuclease-subunit-R
MLINENTIEQACLRFLQELGWDYTHGSTINADGENPWRLRTDEVVFRSVLREAVERLNPQLPSATVDEVVALVCKTDITDLTERNQQAYRYLREGVRVEYRENDEQKVEFARLIDFQQPSLNRFDVVNQLTILGRKGNRRPDVICYINGLPVVVLELKNPLKENADLPQAFNQLQTYKQEIGDLFVYNQALVISDGILAKVGSLTADLERFSPWRVVDEKNKQRISFEHELEGLVRGLLNPASLLDYIQNFIVFEQTSSGRLVKKIAAYHQFYGVNEAVDCTLWAASEQGNGKIGVMWHTQGSGKSLSMLFYAGKLLSQAELRNPTIVVVTDRNDLDGQLYATFSGGQALIRQQPVQADGREALREELAKRETGGVIFTTIQKFGLQEGEQAHPVLNERHNIIVISDEAHRSQYGFSQSMKLNELNRTGTYRVGYAKHLRDALPNASFIGFTGTPISLEDKDTQEVFGKYVSIYDITDAVEDGATVPIIYEARQIPIAQSAEFDNVVQEAQTLIDEDDESSYNFRLREKLMGTEGRLSRLAEDFVKHFEQRTALIDGKAMVVAMSRQICVKLYEKITALRPEWHSDDVNEGAIKIVMTGSASDPADIQKHIYSSQDKKLLERRFKDPDDPLEIVIVRDMWLTGFDAPCCNTMYIDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTSELREATEQYTRSHGKGQMTHNIAEIKAKMLEYIDVVRGQFATPVNDQPFKLFDALKIEDELALFKQVMLGANHILALDHQTVADKTEKTPRRNAFLKAVRLAKKGFSLCGADGDVQQYQKELAFYDAVRAILAKREPNSTASSEERQLQLVALLNKAVDASGAINLFDLLNREQPNINILSEEFLEKIKNSQTKELWLLAVERYLRSQINEKGTGNLAVQKDFSERLKEALNKYHNQNLTIMQVLEELLNMSKEFAERLQRGEKLGLSPAEIAFYDALARNESAVRELGDDALKNLAKAITDKLRKSATIDWQYKEAVRAKMRNLVRVTLRLFKYPPDKCDEAIQFVLEQAEVIADELTTV
>NZ_CP021644.1|WP_005712464.1|1278843_1279938_-|histidinol-phosphate-transaminase
MQFINIANEGVKTLAPYQAGKPIEELERELGISNIVKLASNENPFGFPESAKQAILKQLNDLTRYPDANGFELKATIEKKFGVQPNQITLGNGSNDLLELFAHTFASDKDEIIYSQYAFIVYPLVTKAINAVAREIPAKDWGHDLSAFEQAINDKTKLIYIANPNNPTGNFLSQQEIERFLDRVPVNVIVVLDEAYTEFTDPAERLNSFALVQKYPNLIVSRSLSKAYGLAGLRIGYAVSHPEIADLLNRVRQPFNCNSLALAAAIAVMQDDDFIAKVAENNRNEMQRYEAFFKANQLDYIPSKGNFITVDLKQPAQPIYQALLHEGVIVRPIAGYGMPNHLRVSIGLPEENDKFFMALRKVLI
>NZ_CP021644.1|WP_005712467.1|1278318_1278579_-|DinI-like-family-protein
MQATIDIRLANLQKMDQGKFNRLLDIVAEQVEKAFPNAIVRVRPSVSNSDLSVFGLGKEGKQKVATFLEQLFEEGSAFDELQDEYY
>NZ_CP021644.1|WP_080513235.1|1278052_1278325_+|hypothetical-protein
MRLTLAFPLDFQSLGVEQVWLVHRLDKVTSGLLILALNPTSASYFGELYGGEKADRVYLHAYQLDFYYHSQPISVRVLPSGQFWQKQNDQ
>NZ_CP021644.1|WP_005712471.1|1276471_1277875_+|asparagine--tRNA-ligase
MSKFPTISEILSGKVAVGEEVAVRGWVRTRRDSKAGLSFLAVYDGSCFDPIQAIINNDLSNYQDEVLRLTAGCSVIVTGVIVESPAEGQAVELQAKSVEVVGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYWVATPLITASDTEGAGEMFRVSTLDLENLPRGEDGKVDFSQDFFGRESFLTVSGQLNGETYACALSKVYTFGPTFRAENSNTTRHLAEFWMVEPEFAFATLADNAKLAEDMLKYVFRAVLEERKDDLKFFEKHVDNTVISRLENFINSDFAQIDYTDAIEVLLKSGKDFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDKRMVEMGLNPEDYWWYRDLRRYGTVPHSGFGLGFERLIVYVTGLQNIREVIPFPRAPRNANF
>NZ_CP021644.1|WP_051148003.1|1273915_1276258_+|TonB-dependent-receptor
MNAEQLELDEISVMGKVPEGNSISFLKVSDAIIDGEKFKNRSATLGNALSSELGVHSTPFGGGASAPIIRGQEGVRVKILQNNADVVDMSNISPDHAITADTLLANQVEILRGASTLLYASSSPAGIVNIVDQRIPNKMPKKGYEVTLSSRFDTASKEKVYALGTTIGIGKHLALRLEGLDRQSQNYKVPQIKLGETLNYVPDTYHQSKVGTIGLSFIGEKGYLGASYNQRKDRYGLPGHNHKFDTCIAHIYDMRLQGKHSYTNLYPHLMSDEMVTENPHFHCGTDYDLDPSHSHDHPYGHDHDHTHIGPWVDLHSKRIDIKGEIKQPLPMLDKIQLSYAQTDYYHDEKDAGKSGDTINPNRVDKSKDFGKPVNIFKNQGKNARLEFFHTPIGGLTGMFGVQYQTLQSSANTPNNREVQWPLVDNRNKQISLFALEQYAWDNFAIELGLRTEKQNIHIDYDLAKIQKQQKFNERTYGKQVDPDLSDYDEKAISYTGAFNWFFHPDYQLSFTASHNERLPTPMELYYHGQHLATNSFEYGNKDLKKEISNNFELGLGYHTEKLDYKLSTYYNNFDNYIYNETLYRSNNLFMRRYNQAKATFYGLEGIINYRFTPDYQFSVFGDMVKGKLKQLPDIKGLNDVYGEPILNPDYDPEYDEPEDQYYRPYLGKEMIKQADRVSPRLPPIRLGARFNAQLTENLSGSVEWMKVFTQNKVSKLESSTKGYQLLNASLNYRRQIKGVEYTVSLTGNNLLNQAVYIHNSYHPYVPQMGRNFILGLDLSF
>NZ_CP021644.1|WP_005712473.1|1272143_1273643_-|exopolyphosphatase
MSEMPSREFAAIDLGSNSFHMIVARIVNGSIQILSRIKRRVRLAEGLDEHRHLNQEAIDRGVACLALFAERLKGFSPENVKVVGTYTLRRALNNQDFLAQAQQVFPFPIEIISGQEEARLIYSGVSHTQPEKERKFVVDIGGGSTEMTIGDGFTPLRAESRHMGCVSFAKRFFPAGELTQARFEQAYQTAMEKIDDLAWEYRELGWQHVLGSSGTIKTVSKVLIANGYRDGLITEARLQTLIDRCLAFHSLKEIQLKGLLEERADVLVPGLAILLALFHTFHIQSMRYSDGALREGILYGVESGFQVGDIRQRTAKALAEQFNIDQHQAERIKDTALRLFDQVTAWKNKRQIQELREILQWASLLHEVGISINHNGAHRHSAYIIANLDLPGFDSEQQTLLATLMRYHLKGFKRHDLKIASRFQHPDILTLLRIFRLAVLLNRSRQATNIPMELNLSIQNSSWHLSFDKVFLAQNPLILADLLDEARYLQAVNLTIDFS
>NZ_CP021644.1|WP_005714915.1|1287902_1288874_+|IS110-family-transposase
MNAPIYCGIDVAKRNFVIGFSHQKKTKTETNNAKGIQHTLDYLSQFNVALITLEATGGLEIPVAKALARAGYRVFIANPLKASEFAKSQTRAKTDAKDAVNLAFYGLTCELKGEVEHQLYVPLSEQEEQLEALVVRRRQLVDMRVAELNRLQQSHETQLDNIQQHIEMLDKLIAELDKDIDDQSKHFSDKADLISDIKGVGKNCVAVMMSSLPELGKLSSKRIASLVGVIPHSQESGQWKGKSFCYGGRAIVRNALYMAALSAIRFEPVFKAFYTRLVAKGKAKKVAIMACMRKLLTIMNALVRRNEKWDATRYLSTESVGQN
>NZ_CP021644.1|WP_005713674.1|1288912_1289995_-|3-phosphoserine/phosphohydroxythreonine-transaminase
MTQVYNFSAGPAMMPTAVLEKAQTELLNWQNQHTSVMEVSHRGKLFMEMIAECEQNFRKLYNIPENYKILFLQGGARGQFAAIPMNLIGEKGKALYLTSGHWSATAAKEARNFCEIDEINILEQGDELKVGNLDFSEIAEQYDYVHYCPNETISGVEIFEEPKVGNAVLVADMSSNILARRIDISQFGLIYAGAQKNLGPAGITIVIVREDLIGKARKSTPSIWNYETQANNDSMINTPPTFAWYLCSLVFKHLLNIGGLAEVEKRNQAKAELLYRYLDNSNFYRNTVAKANRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRASIYNAMPIEGVQALIAFMQKFEAENK
>NZ_CP021644.1|WP_005713672.1|1290059_1290467_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MKILLDSHILLWLAWDKKENLSPQAVELLDDPTSEIYFSLASLWEIAIKSSLGKPDFDIDVEALEQGLIQVGCRMLAIELPHILKQAQYPFIHRDPFDRLLMAQAEVENVFFMTADTMILKYQKPYIIDVRSYKN
>NZ_CP021644.1|WP_005713671.1|1290463_1290727_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MLNQSLESVNMHEAKTNFSRIVEDVKRFGKPIIIAKSGKPQVKIVPLDTIQNGSRFGFMKKQNMQIPEDFDRLYQNEIVAMFEGKEE
>NZ_CP021644.1|WP_005713670.1|1290790_1292116_-|Xaa-Pro-aminopeptidase
MDLAYLQKLPQEEFHTRRQRLFEQMQDNSTLIVFTETEKRRNNDCDYLFRPDSYFWYLTGFAEPKSALVLLKKAGLCESLIFLRKKDPLMETWNGRRLGIEVAPQTLNVDQAYDIDDIQTILAEKWADLTACYYAINVQTWGDQIVFATFDAITASRKKAPTTLIDWQPILSEMRLFKSEAEIALLQQACQISAFGHLRAMKQTRPNRYEMEIEGEIQHEFSRFGSRFASYNQIIAGGDNACILHYNENDQVLKDGDLLLIDAGAEFAMYAGDITRTIPINGKFSTAQKEVYEIVLEALKEATKLLVPQSSIKLANDKAVRIMTEGMVRLGILKGNVDELIENKAYRQFYMHGLGHWLGLDVHDVGDYGNERDRPLEIGMVLTVEPGLYIPKDADVPEQYKGIGIRIEDNLLITEYGNKNLTSGVPKEIGEIEAVMGQATN
>NZ_CP021644.1|WP_005713668.1|1292588_1293365_+|nucleoside-triphosphate-pyrophosphohydrolase
MATIQQFLDIVERLRDKETGCPWDIKQTFDTMLPNLLEETYEVAEAIYTKNRTALREELGDLLLQVVFLSQLAKEEGIFSFQDVLNDIHDKLIYRHPHVFGDTAATNSEEALQNWEAQKAKEKEAKQQTSILDDLPFALPALTRADKLQKRCAKVGFDWDNPQDVLAKVEEELTEVQEEIQQQQPEKLAEELGDLLFATVNLCRHHKIDSETALRNANVKFENRFRKIENYLISQGKKPQDCTLSELDFLWNEIKKVE
>NZ_CP021644.1|WP_005713666.1|1293464_1294190_+|response-regulator
MPKILLVDDDVDLTELLSESLSLEGFDIHTVHNGQDALTELEIQNYDLILLDVMMPILNGIETLKQIRQKYSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRSITQKPSIPVETTFVINDDDDRKLLQFGGVELHPGRQQAIYEGKDLDLTGTEFALLQILMRNPGQILLRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLLVTEK
>NZ_CP021644.1|WP_005713665.1|1294258_1295635_+|envelope-stress-sensor-histidine-kinase-CpxA
MLKLRNFRRYLAYQIFASFMVTIAIILALAILLPSLDTRRFKQIDDFQLGFLQHETKYVEQEYNLDEVFRHNLSVASINGFDIILFDHASQQLAGIREENNEAFHAFIYKAKNHLQPLQRRFGTMEFYGPFLASSHTRTYDLYFTKKVNPQRELINTLFDSPWIMLLLFLFVSSPVMIWLSYRIAKPVKELRLTANAVARGNLAINPKLETSGIEELRQVGASFNEMIVALERLTNYQHRLLSDISHELKTPLTRMQLALSLLLRRNGESSEITRIEGEITKLDTMIHDLLVLSRKQANHHLERKVFPIHKIWDDVLNDAKFELEQSGFDLVVSQRILHPERYFVNGNVVLLASAVENVIRNAKKYAQTTVKVMFYIDASDLYILVDDDGEGVPEDQYKEIFRPFYRVQEDRARQTGGTGLGLSIVANAIRQHHGSVRAEKSPLGGLRVKMQLPLWVE
>NZ_CP021644.1|WP_005713663.1|1295717_1296410_+|16S-rRNA-pseudouridine(516)-synthase-RsuA
MRLDKFIAENTGLTRSQASKALRAGQVTVNGVVEKNSATKISEQDEICFDGEPLAWVDEGQYFMLYKPQNCVCSHDDGDYPTVFQFFDYPLTTKLHCAGRLDADTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEDFYATQFAEGILLRGEKTLTKPATLEILDDYNVNLTISEGRYHQVKRMFAALGNKVVALHRWRIGNVVLDETLAEGEFRALTEDEVASF
>NZ_CP021644.1|WP_005713662.1|1296410_1297607_+|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MNKITKPNGFFVVIMGLLSMLPPLAIDMYLPSFLDIAQDLSVSQEKVQTTLAIFTFGFAIGQLFWGPIADSFGRKPIILLGLSGGAVAAFFLTQVLSIENFYLLRLLQGLFGAAPAVVLGALVRDIFDRNQFARLMSTIMIITMIAPLVAPILGGYVAKWLHWHAIFYILMVMGIVCVCLVATLIPETLSTENRMPLSFRQVLQNFATLISHKATLGYVLVGGMSFAGMFCFLTSGSLVYIGLYGVSSEYFGYFFMLNIAVMMVMTFINGRLVTKIGSEKMLRIGMSLQLLAGIWLIISATLQLGLWSMAIGVAFFVGMVSTIGSNASAAILDRYPQMAGTANAVAGTARFGIGSLVGAGLSHIPLTSERPMLYTMAACTVVGFIAYYFLSCRNQQLQ

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Crispr_ID: NZ_CP021644_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021644_5

1657422-1657591

Orphan

Consensus_repeat	Method
CCAGGACAAGCGGGTCCAGCAGGACCACGAGGACC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP021644_5

>merge|NZ_CP021644|5|1657422-1657591|PILER-CR
GCGGGTCCAGCGGGACCAAAGGGTGAACCGGGTCCTAAAGGTGAACAAGGTATTCCAGGACAAGCGGGTCCAGCAGGACCACGAGGACCGCAGGGAACAGCGGGTGCTCAGGGACCTAAGGGGGATAAAGGCGAACCAGGAGAAGCGGGTCCAGCAGGACCACGAGGCCC

>NZ_CP021644|5|2|1657422-1657591|PILER-CR
GCGGGTCCAGCGGGACCAAAGGGTGAACCGGGTCC	TAAAGGTGAACAAGGTATTCCAGGACAAGCGGGTCC
AGCAGGACCACGAGGACCGCAGGGAACAGCGGGTG	CTCAGGGACCTAAGGGGGATAAAGGCGAACCAGGAGAAGCGGGTCC
AGCAGGACCACGAGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021644.1\|WP_005712722.1\|1651557_1651950_-\|fumarate-reductase-subunit-FrdC	unknown	unknown	gnl\|CDD\|235327
NZ_CP021644.1\|WP_005712712.1\|1644200_1644830_+\|repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP021644.1\|WP_005714137.1\|1669088_1669508_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|182337
NZ_CP021644.1\|WP_005714125.1\|1661827_1662079_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271191
NZ_CP021644.1\|WP_005714126.1\|1662430_1663450_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP021644.1\|WP_005712714.1\|1647107_1649135_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP021644.1\|WP_005714134.1\|1664156_1665260_-\|porin-OmpA	unknown	unknown	gnl\|CDD\|236764
NZ_CP021644.1\|WP_005712493.1\|1670890_1671205_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP021644.1\|WP_005714135.1\|1665663_1668756_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP021644.1\|WP_005712495.1\|1671501_1672131_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|236665
NZ_CP021644.1\|WP_005712724.1\|1651962_1652733_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|183490
NZ_CP021644.1\|WP_080651597.1\|1662045_1662339_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271191
NZ_CP021644.1\|WP_005712726.1\|1652739_1654524_-\|fumarate-reductase-(quinol)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236421
NZ_CP021644.1\|WP_005712720.1\|1651199_1651544_-\|fumarate-reductase-subunit-FrdD	unknown	unknown	gnl\|CDD\|180105
NZ_CP021644.1\|WP_005712716.1\|1649198_1650017_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|234977
NZ_CP021644.1\|WP_005712718.1\|1650125_1650881_+\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP021644.1\|WP_005714123.1\|1658811_1661478_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP021644.1\|WP_020996917.1\|1644912_1645221_+\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|234765
NZ_CP021644.1\|WP_020996916.1\|1645220_1647050_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|182933
NZ_CP021644.1\|WP_005714128.1\|1663679_1664075_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692

Protein	Function_ID	Function_description	E-value
NZ_CP021644.1\|WP_005712722.1\|1651557_1651950_-\|fumarate-reductase-subunit-FrdC	gnl\|CDD\|235327	PRK04987, PRK04987, fumarate reductase subunit FrdC.	1.14266e-56
NZ_CP021644.1\|WP_005712712.1\|1644200_1644830_+\|repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	3.93744e-110
NZ_CP021644.1\|WP_005714137.1\|1669088_1669508_+\|hotdog-fold-thioesterase	gnl\|CDD\|182337	PRK10254, PRK10254, proofreading thioesterase EntH.	9.48877e-46
NZ_CP021644.1\|WP_005714125.1\|1661827_1662079_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271191	cd01191, INT_C_like_2, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.2841e-16
NZ_CP021644.1\|WP_005714126.1\|1662430_1663450_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP021644.1\|WP_005712714.1\|1647107_1649135_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP021644.1\|WP_005714134.1\|1664156_1665260_-\|porin-OmpA	gnl\|CDD\|236764	PRK10808, PRK10808, outer membrane protein A; Reviewed.	8.65151e-114
NZ_CP021644.1\|WP_005712493.1\|1670890_1671205_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	4.10747e-44
NZ_CP021644.1\|WP_005714135.1\|1665663_1668756_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.16285e-93
NZ_CP021644.1\|WP_005712495.1\|1671501_1672131_-\|LysE-family-transporter	gnl\|CDD\|236665	PRK10229, PRK10229, threonine efflux system; Provisional.	1.34649e-35
NZ_CP021644.1\|WP_005712724.1\|1651962_1652733_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|183490	PRK12385, PRK12385, succinate dehydrogenase/fumarate reductase iron-sulfur subunit.	0
NZ_CP021644.1\|WP_080651597.1\|1662045_1662339_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271191	cd01191, INT_C_like_2, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	5.41518e-35
NZ_CP021644.1\|WP_005712726.1\|1652739_1654524_-\|fumarate-reductase-(quinol)-flavoprotein-subunit	gnl\|CDD\|236421	PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated.	0
NZ_CP021644.1\|WP_005712720.1\|1651199_1651544_-\|fumarate-reductase-subunit-FrdD	gnl\|CDD\|180105	PRK05470, PRK05470, fumarate reductase subunit FrdD.	6.80212e-51
NZ_CP021644.1\|WP_005712716.1\|1649198_1650017_-\|cell-division-protein-ZipA	gnl\|CDD\|234977	PRK01741, PRK01741, cell division protein ZipA; Provisional.	1.06552e-118
NZ_CP021644.1\|WP_005712718.1\|1650125_1650881_+\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	8.24244e-127
NZ_CP021644.1\|WP_005714123.1\|1658811_1661478_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP021644.1\|WP_020996917.1\|1644912_1645221_+\|iron-donor-protein-CyaY	gnl\|CDD\|234765	PRK00446, cyaY, frataxin-like protein; Provisional.	2.37969e-49
NZ_CP021644.1\|WP_020996916.1\|1645220_1647050_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|182933	PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional.	0
NZ_CP021644.1\|WP_005714128.1\|1663679_1664075_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	1.14061e-71

>NZ_CP021644.1|WP_005712726.1|1652739_1654524_-|fumarate-reductase-(quinol)-flavoprotein-subunit
MQTVNVDVAIVGAGGGGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGAAAVAKEEDSYDKHFHDTVAGGDWLCEQDVVEYFVEHSPVEMTQLERWGCPWSRKADGDVNVRRFGGMKIERTWFAADKTGFHLLHTLFQTSIKYPQIIRFDEHFVVDILVDDGQVRGCVAMNMMEGTFVQINANAVVIATGGGCRAYRFNTNGGIVTGDGLSMAYRHGVPLRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPVGKPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLHERLPFICELAQAYEGVDPAKAPIPVRPVVHYTMGGIEVDQHAETCIKGLFAVGECASSGLHGANRLGSNSLAELVVFGKVAGEMAAKRAVEATARNQAVIDAQAKDVLERVYALARQEGEESWSQIRNEMGDSMEEGCGIYRTQESMEKTVAKIAELKERYKRIKVKDSSSVFNTDLLYKIELGYILDVAQSISSSAVERKESRGAHQRLDYVERDDVNYLKHTLAFYNADGAPTIKYSDVKITTSQPAKRVYGAEAEAQEKAAKKE
>NZ_CP021644.1|WP_005712724.1|1651962_1652733_-|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MTNQSKMTVEVLRYNPEQDNEPYLSKYEVPYDSQTSLLDALGYIKDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGYMRIEPLANFPIERDLVVDLSHFIESLESIKPYIIDNKAPELDGKPHPSAELAKSRTKQTPAQLEKYRTFSMCINCGLCYAACPQFGLNPEFVGPAALTLAHRYNLDNRDNGKAERMKIINGKNGVWSCTFVGYCSEVCPKHVGPASAVNQGKIESAKDYVFAMLKPQK
>NZ_CP021644.1|WP_005712722.1|1651557_1651950_-|fumarate-reductase-subunit-FrdC
MTTTASKRKKYVREVKPTWWKALDFYKFYVLRESTSVPTVWFCLVLFYGLVCLGNGTFATTFVGFLQNPVVVILNIITLGAVLLNSFTFFGMAPQMMNVIVKNERIDVKLVSRVFWGITAFVSLLALILV
>NZ_CP021644.1|WP_005712720.1|1651199_1651544_-|fumarate-reductase-subunit-FrdD
MDKLNPPRSNEPAVWLLFGAGGAISAIFFPVLVLILGFLLPFGLITPDNIIAFAHTWIGKLAILALLIFPMWCGMHRIHLGLHDFKVHVPAGGWIFYGLSALYSVLVIFAVINL
>NZ_CP021644.1|WP_005712718.1|1650125_1650881_+|sulfate-transporter-CysZ
MLSFFSSFDSEIKAGFHYFIYGWRLMLQRQLMPFIIFPVIINAVLMISLIWLFFANVGGMLDSLLPSWLEWLSFILIPLAFLMILVAFYFAFTTLANFIAAPFNALLAEKVEQQLTGKNLMEMSFNEMLKDVPRMLKREWQKMWYSIPRLVALFLLGFIPVLGQTIIPILAFIFGAWLIAIQYCDYPFDNHKIQFQRMRNALAQYRTMNFTFGALVSIFTMLPFINLVVMPVAVCGATAMWVNEYKRALHD
>NZ_CP021644.1|WP_005712716.1|1649198_1650017_-|cell-division-protein-ZipA
METHILFFILAGLLIAVLIGYSIWSARREKSRIFSNTFSTRPPSSPISNEITADIPTTLNPQGVVAQQPFNTETPADFIQSQQEVENSVKNIRISLQTQEISQPLYQETMPESPSEAYQQNQIQEQTVQVEQVETIEQTTEHNIITLYVVAPEGVQFQGNAIVQNLEMLGFHFGEYQIFHRHLDNPASPVLFSVANMMQPGVFDLARMEQFSTVGLVFFMHLPSVGNDLANLKLMIRTVESFAQSVGGFVLDEQHQIFNDESRQNYLLRVAN
>NZ_CP021644.1|WP_005712714.1|1647107_1649135_-|NAD-dependent-DNA-ligase-LigA
MPHPIETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPTQRVGAKPLDGFAQITHEIPMLSLDNAFSDDDLIGFLRRIEDRIAINSNQIEFCCEPKLDGLAVSILYVDGVLTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQQGFEQLNEKALAKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPTTHFDRLQWLKTLGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQEQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPTACPVCNSAVVRVEGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELIHTPADLFKLDHTTLMRLERMGEKSANNALQSIEKAKNTTLARFLFALGIRDVGESTAQNLANHFGTLDAIRQADLDTLKQVQDVGEVVANRLFQFWQEPHNVEVVEDLIAQGVKWQDVVPQEIADNPLKDKTVVLTGTLTQLTRDQAKALLQQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELIGYFTTIVS
>NZ_CP021644.1|WP_020996916.1|1645220_1647050_+|ATP-dependent-DNA-helicase-RecQ
MSVTPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQLLINGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCNSRKKVEELTEKLSSHRFSVMGYHAGMTVQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICLDPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQNIVNHSALQLTEQARPILRGETALALASPRLSFSATTYVQKQQTSKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATLQEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIVCD
>NZ_CP021644.1|WP_020996917.1|1644912_1645221_+|iron-donor-protein-CyaY
MNLAEFHQAIEQVWEHIEEQLEEQGCDVDCETQGAVFTITFDDDSQIVINKQEAMLELWLASKLGGYHFAYRDGDWVSAEGRSFWTHLEEAVARHGETISFS
>NZ_CP021644.1|WP_005712712.1|1644200_1644830_+|repressor-LexA
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDEEGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEVTVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM
>NZ_CP021644.1|WP_005714123.1|1658811_1661478_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLVEISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLKVYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATASGTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGMGRVATGVRGIKLATTEISVDDAEEVDIETVENEEAEEASSVNLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIENLSVEEA
>NZ_CP021644.1|WP_005714125.1|1661827_1662079_+|tyrosine-type-recombinase/integrase
MSFPEYKTLCDYLKEYNLRYYFIVRFLGSTGARISELVKFTIQDLEKGYAECHSKGKFRRINIPQSLINESREFFKIIKKNYS
>NZ_CP021644.1|WP_080651597.1|1662045_1662339_+|tyrosine-type-recombinase/integrase
MFQNHKKELFLNRYGAPISARGIAHNLKIYAEKCDIRKDVVHPHNFRHFFAIQFLKKNNNIALLADLLGHSNVNMTALYLRLSHSEQREAINNSVNW
>NZ_CP021644.1|WP_005714126.1|1662430_1663450_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAIKIGINGFGRIGRIVFRAAQKRDDIEVVGINDLIDVEYMAYMLKYDSTHGRFDGTVEVKDGKLVVNGKEIRVTSERDPANLKWNEIGVDIAVEATGLFLDDTTARKHIEAGAKKVVLTGPSKDSTPMFVNGVNFNAYAGQDIVSNASCTTNCLAPLARVIHETFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTANVSVVDLTVNLEKPASYEEIKKAIKDAAEGKTFNGELKGVLGYTEDAVVSTDFNGAVETSVFDADAGIALTDTFVKLVSWYDNETGYSNKVLDLVAHIYNYKG
>NZ_CP021644.1|WP_005714128.1|1663679_1664075_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MIKDISELTEEQIEICLNAGTEKPFSGKFLKENRVGTYRCVRCHNALFRSDAKFDAGCGWPSFYETISESSLRYVDDYSLGRHRVEIRCGNCDAHMGHVFKDGPQPTGLRFCLNSIALNFKWDQTGEEIDG
>NZ_CP021644.1|WP_005714134.1|1664156_1665260_-|porin-OmpA
MKKSLIALAVSGLAVASVAQAAPQANTFYVGAKAGWATFHNDINQLNSKYKNDARYATSANGYVINRNSVTYGVFGGYQIIDNLAVELGYDYFGRVRGNKQEFRAFKHSAHGTHLSLKPSYEVLNGLDVYGKVGAALVRNDYKRYSQTAGVQTQKAHNLKTSLVLGAGVEYAILPELAFRVEYQWLSNVGNFTKAEAKENRRATYNYSPDSHSVTAGISYRFGQGAAPVAAAPEVVTKNFAFSSDVLFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRIGKDAANLTLSQKRAETVANYIVSKGVNPANVTAVGYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGSKEVSM
>NZ_CP021644.1|WP_005714135.1|1665663_1668756_+|FAD-binding-oxidoreductase
MIPRLANIPQLNPLVQQYLAELKQQHFSGDIASNYADRLSLTTDNSVYQQLPQAILFPKSVADVVILTKLAQKTAFQALTFTPRGGGTGTNGQSLNNNIIVDLSRHLTQILELNVQERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINTDASGQGSLQYGKTSDHILTIKAVLMNGDILETQAVKTDNFFANVDQLNLTANGKKLHSEIFQRCQALRPTVLKELPQLNRFLTGYDLKNVFNDDLSEFNLTRILTGSEGSLAFICEAKLNLLPLPEYRTLINIKYNSFDAALRSAPFMLQAQALSVETVDSKVLNLAKQDIVWHSVSDLLSEDEHNPILGINIVEYASNDKAQNEARIAKLCQALDEKIQNGTSGIIGYQLCNDLASIEKIYAMRKKAVGLLGNTKGWAKPIAFVEDTCVPPEHLADYIVEFRQLLDDHGLDYGMFGHVDAGVLHVRPALDLCDKAQVAKFKTISDQVVGLTAKYGGLIWGEHGKGMRSAYGERFFGETLWKELRYIKQLFDPQNRLNPGKICTPLDSQASLYPIDSQMRADLDRQIPIQVREAFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLFSPKGRATLVREWLRLLAEQNVSPDELIFEKQQTSAKLVDFAKKIRNQWRKSQEYDFSHEVKSAMDTCLACKACASQCPIKIDVPTFRSQFNELYHRRYLRPLKDYVVANLEFVAPIMAKQPKLFNFFSANKLAETVVSKTIGMVDLPALSVPTLQQQLVEIGYQGKTLEELEQLATSGQLDTEICKYVLVVQDPFTSYYDAKVVADFVQLAQKLGFKAIVLPFNPTGKAQHIKGFLHKFANTARTQAELLNRVAKLGIAMVGVDPALTLIYREEYRQILKDDCGEFKVLLAHEWLLAQLKNGTLDHCKKSAETDRLPWHLFAHCTESTSLPNSLKEWQQIFAHFGETLTAENIGCCGMAGTFGHETKHLAMSKGIYAQSWQVKLQGKTLSRCLATGYSCRSQVKRMEHQLLKHPVQALLEVI
>NZ_CP021644.1|WP_005714137.1|1669088_1669508_+|hotdog-fold-thioesterase
MIWKKNTTIEQLNQLCQHSAISHLGIEFTAQQNDSLEATVPVDHRTTQPFGLLHGGISATLAETLGSAAALLCCEENQIPVGTELNISHLKAIKSGKATGRATPLHLGKESQVWQIEIRDDAQQLCAVARLSTKLLSQR
>NZ_CP021644.1|WP_005712493.1|1670890_1671205_-|thioredoxin
MSRVIHTTDASFEQDVLKSDVPVLLDFWAPWCGPCRAIGPVLDDLAINLGNKARIVKMNVDENQQIPAEFGVRSIPFLLIFKNGEVVAQQVGAQNLPAFLEHLS
>NZ_CP021644.1|WP_005712495.1|1671501_1672131_-|LysE-family-transporter
MWTIFFVQLLGLISPGPDFFYVSRKAMADTRRNAILGAIGISIGVAFWALLTLFGLAFLNKHFPSFQFVLMICGGSYLAYSGIQMVQITKNAEIGSATSTSQATSTVKEILKGLMINLANPKIVVFFSSVLAGYVANLSALADLLAVLAILVGSAVVYFWLVALLFSRPAIRHFYAKYNRYLDNFAGAVFILFGGKLVYEGVFSLWIFS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	NZ_CP021644.1	1657674-1657709	0	1.0
NZ_CP021644_2	2.3\|1056523\|38\|NZ_CP021644\|CRT	1056523-1056560	38	NZ_CP021644.1	1056289-1056326	0	1.0
NZ_CP021644_2	2.3\|1056523\|38\|NZ_CP021644\|CRT	1056523-1056560	38	NZ_CP021644.1	1084675-1084712	0	1.0
NZ_CP021644_2	2.3\|1056523\|38\|NZ_CP021644\|CRT	1056523-1056560	38	NZ_CP021644.1	1657377-1657414	0	1.0
NZ_CP021644_2	2.3\|1056523\|38\|NZ_CP021644\|CRT	1056523-1056560	38	NZ_CP021644.1	1657611-1657648	0	1.0
NZ_CP021644_2	2.4\|1056586\|38\|NZ_CP021644\|CRT	1056586-1056623	38	NZ_CP021644.1	1657674-1657711	0	1.0
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	NZ_CP021644.1	1657674-1657709	0	1.0
NZ_CP021644_2	2.2\|1056440\|46\|NZ_CP021644\|PILER-CR	1056440-1056485	46	NZ_CP021644.1	1084575-1084620	1	0.978
NZ_CP021644_2	2.5\|1056649\|38\|NZ_CP021644\|CRT	1056649-1056686	38	NZ_CP021644.1	1433082-1433119	1	0.974
NZ_CP021644_2	2.5\|1056649\|38\|NZ_CP021644\|CRT	1056649-1056686	38	NZ_CP021644.1	1657737-1657774	1	0.974
NZ_CP021644_5	5.2\|1657528\|46\|NZ_CP021644\|PILER-CR	1657528-1657573	46	NZ_CP021644.1	1084575-1084620	1	0.978
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	NZ_CP021644.1	14630-14665	2	0.944
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	NZ_CP021644.1	194028-194063	2	0.944
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	NZ_CP021644.1	1215291-1215326	2	0.944
NZ_CP021644_2	2.3\|1056523\|38\|NZ_CP021644\|CRT	1056523-1056560	38	NZ_CP021644.1	669943-669980	2	0.947
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	NZ_CP021644.1	14630-14665	2	0.944
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	NZ_CP021644.1	194028-194063	2	0.944
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	NZ_CP021644.1	1215291-1215326	2	0.944

1. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to position: 1657674-1657709, mismatch: 0, identity: 1.0

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctaaaggtgaacaaggtatt	Protospacer
************************************

2. spacer 2.3|1056523|38|NZ_CP021644|CRT matches to position: 1056289-1056326, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

3. spacer 2.3|1056523|38|NZ_CP021644|CRT matches to position: 1084675-1084712, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

4. spacer 2.3|1056523|38|NZ_CP021644|CRT matches to position: 1657377-1657414, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

5. spacer 2.3|1056523|38|NZ_CP021644|CRT matches to position: 1657611-1657648, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

6. spacer 2.4|1056586|38|NZ_CP021644|CRT matches to position: 1657674-1657711, mismatch: 0, identity: 1.0

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
aagggtgaaccgggtcctaaaggtgaacaaggtattcc	Protospacer
**************************************

7. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to position: 1657674-1657709, mismatch: 0, identity: 1.0

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctaaaggtgaacaaggtatt	Protospacer
************************************

8. spacer 2.2|1056440|46|NZ_CP021644|PILER-CR matches to position: 1084575-1084620, mismatch: 1, identity: 0.978

gcagggaacagcgggtgctcagggacctaagggggataaaggcgaa	CRISPR spacer
gcagggaacaacgggtgctcagggacctaagggggataaaggcgaa	Protospacer
**********.***********************************

9. spacer 2.5|1056649|38|NZ_CP021644|CRT matches to position: 1433082-1433119, mismatch: 1, identity: 0.974

aagggtgacaaaggtgatacgggtccagcgggaccaca	CRISPR spacer
aagggtgacaaaggtgatacgggtccagtgggaccaca	Protospacer
****************************.*********

10. spacer 2.5|1056649|38|NZ_CP021644|CRT matches to position: 1657737-1657774, mismatch: 1, identity: 0.974

aagggtgacaaaggtgatacgggtccagcgggaccaca	CRISPR spacer
aagggtgacaaaggtgatacgggtccaacgggaccaca	Protospacer
***************************.**********

11. spacer 5.2|1657528|46|NZ_CP021644|PILER-CR matches to position: 1084575-1084620, mismatch: 1, identity: 0.978

gcagggaacagcgggtgctcagggacctaagggggataaaggcgaa	CRISPR spacer
gcagggaacaacgggtgctcagggacctaagggggataaaggcgaa	Protospacer
**********.***********************************

12. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to position: 14630-14665, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctagaggtgagcaaggtatt	Protospacer
*******************.******.*********

13. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to position: 194028-194063, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctagaggtgagcaaggtatt	Protospacer
*******************.******.*********

14. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to position: 1215291-1215326, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccaggtcctagaggtgaacaaggtatt	Protospacer
***********.*******.****************

15. spacer 2.3|1056523|38|NZ_CP021644|CRT matches to position: 669943-669980, mismatch: 2, identity: 0.947

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcgggtccaaaaggtgatacaggtcagaaaggtgaaac	Protospacer
**.*************************.*********

16. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to position: 14630-14665, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctagaggtgagcaaggtatt	Protospacer
*******************.******.*********

17. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to position: 194028-194063, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccgggtcctagaggtgagcaaggtatt	Protospacer
*******************.******.*********

18. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to position: 1215291-1215326, mismatch: 2, identity: 0.944

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgaaccaggtcctagaggtgaacaaggtatt	Protospacer
***********.*******.****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	MT774376	CrAssphage cr55_1, complete genome	95725-95760	7	0.806
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	MT774376	CrAssphage cr55_1, complete genome	95725-95760	7	0.806
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	MT774380	CrAssphage cr1_1, complete genome	22-57	9	0.75
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	MT774380	CrAssphage cr1_1, complete genome	99826-99861	9	0.75
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	GU339467	Mycobacterium phage RedRock, complete genome	4988-5023	9	0.75
NZ_CP021644_2	2.4\|1056586\|38\|NZ_CP021644\|CRT	1056586-1056623	38	MT774376	CrAssphage cr55_1, complete genome	95723-95760	9	0.763
NZ_CP021644_2	2.4\|1056586\|38\|NZ_CP021644\|CRT	1056586-1056623	38	MT774380	CrAssphage cr1_1, complete genome	20-57	9	0.763
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	MT774380	CrAssphage cr1_1, complete genome	22-57	9	0.75
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	MT774380	CrAssphage cr1_1, complete genome	99826-99861	9	0.75
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	GU339467	Mycobacterium phage RedRock, complete genome	4988-5023	9	0.75
NZ_CP021644_2	2.1\|1056369\|36\|NZ_CP021644\|PILER-CR	1056369-1056404	36	MT774380	CrAssphage cr1_1, complete genome	1-30	12	0.667
NZ_CP021644_5	5.1\|1657457\|36\|NZ_CP021644\|PILER-CR	1657457-1657492	36	MT774380	CrAssphage cr1_1, complete genome	1-30	12	0.667

1. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 7, identity: 0.806

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggggaacctggtcctaaaggtgaaccgggagct	Protospacer
***** ***** **************** .** ..*

2. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 7, identity: 0.806

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggggaacctggtcctaaaggtgaaccgggagct	Protospacer
***** ***** **************** .** ..*

3. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
cagggagaacctggtcctaaaggtgaaccgggagaa	Protospacer
 **** ***** **************** .** .

4. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
ccgggagaacctggtcctaaaggtgaaccgggagct	Protospacer
  *** ***** **************** .** ..*

5. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to GU339467 (Mycobacterium phage RedRock, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgatccgggtccgaaaggtgacaccggcagc	Protospacer
******** ******** ********    **.* .

6. spacer 2.4|1056586|38|NZ_CP021644|CRT matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 9, identity: 0.763

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
aagggggaacctggtcctaaaggtgaaccgggagctga	Protospacer
***** ***** **************** .** ..*

7. spacer 2.4|1056586|38|NZ_CP021644|CRT matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.763

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
cagggagaacctggtcctaaaggtgaaccgggagaacc	Protospacer
 **** ***** **************** .** .  **

8. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
cagggagaacctggtcctaaaggtgaaccgggagaa	Protospacer
 **** ***** **************** .** .

9. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
ccgggagaacctggtcctaaaggtgaaccgggagct	Protospacer
  *** ***** **************** .** ..*

10. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to GU339467 (Mycobacterium phage RedRock, complete genome) position: , mismatch: 9, identity: 0.75

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
aagggtgatccgggtccgaaaggtgacaccggcagc	Protospacer
******** ******** ********    **.* .

11. spacer 2.1|1056369|36|NZ_CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 12, identity: 0.667

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
ccgggagaacctggtcctaaaggtgaaccg------	Protospacer
  *** ***** **************** .

12. spacer 5.1|1657457|36|NZ_CP021644|PILER-CR matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 12, identity: 0.667

aagggtgaaccgggtcctaaaggtgaacaaggtatt	CRISPR spacer
ccgggagaacctggtcctaaaggtgaaccg------	Protospacer
  *** ***** **************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

578926 : 587307

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005712132.1\|578926_580246_-	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	1.5e-30	33.7
WP_005712135.1\|580437_582312_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_005712138.1\|582781_583873_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.7e-49	37.0
WP_005712141.1\|583874_584519_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.1e-41	42.1
WP_005712143.1\|584650_585850_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.6e-98	48.7
WP_005712146.1\|585942_586404_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.1e-42	58.1
WP_005712148.1\|586515_587307_-	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	1.4e-10	28.0

DBSCAN-SWA_2

591740 : 666982

Mannheimia_phage(29.73%)

tail,protease,tRNA,portal,terminase,transposase,integrase

attL 591662:591711|attR 628162:628211

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
591662:591711	attL	NA	NA	NA	NA
WP_005712160.1\|591740_592796_-\|integrase	site-specific integrase	A0A077KGX2	Edwardsiella_phage	6.6e-61	37.3
WP_005712164.1\|593095_593899_-	hypothetical protein	Q7Y5X0	Haemophilus_phage	1.5e-33	43.7
WP_005712166.1\|594350_594731_-	hypothetical protein	NA	NA	NA	NA
WP_005712169.1\|595096_595309_+	hypothetical protein	NA	NA	NA	NA
WP_005712171.1\|595327_595591_-	hypothetical protein	NA	NA	NA	NA
WP_005714394.1\|595614_596280_-	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	2.8e-41	80.6
WP_012621814.1\|596626_596815_+	hypothetical protein	Q19US2	Mannheimia_phage	2.6e-13	72.4
WP_005714753.1\|597466_598333_-	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	4.8e-57	54.9
WP_112065000.1\|598975_599839_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.1e-48	47.1
WP_035494815.1\|599881_600265_+	antitermination protein	Q7Y5V5	Haemophilus_phage	8.1e-09	30.3
WP_005714900.1\|600286_600724_-	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	1.4e-20	36.9
WP_005714898.1\|600753_600939_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_035494894.1\|601191_601455_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	1.3e-18	70.6
WP_040978467.1\|601429_601975_+	lysozyme	Q19UR6	Mannheimia_phage	2.5e-43	48.9
WP_040978465.1\|601947_602292_+	DUF2570 domain-containing protein	A0A0M3LSP1	Mannheimia_phage	5.2e-07	59.8
WP_040978499.1\|602320_602470_+	hypothetical protein	A0A0M3LSZ0	Mannheimia_phage	2.4e-17	77.6
WP_005714379.1\|602785_603253_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.3e-40	53.9
WP_005714376.1\|603252_605373_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	5.1e-270	66.5
WP_005714374.1\|605390_605612_+	hypothetical protein	K7PMB5	Enterobacterial_phage	1.3e-11	55.9
WP_005714372.1\|605612_607112_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.3e-155	57.0
WP_005714371.1\|607137_609105_+\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	2.5e-194	57.2
WP_005714908.1\|609336_610323_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	9.7e-22	32.7
WP_005714561.1\|610380_610707_+	DUF2190 family protein	NA	NA	NA	NA
WP_005714563.1\|610699_611005_+\|tail	phage tail protein	NA	NA	NA	NA
WP_005714565.1\|611008_611542_+\|tail	tail protein	M9NZH5	Enterobacteria_phage	5.4e-19	35.3
WP_005714567.1\|611541_611961_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	7.2e-11	33.3
WP_005714568.1\|611963_612629_+	hypothetical protein	NA	NA	NA	NA
WP_005714571.1\|612702_613104_+	hypothetical protein	NA	NA	NA	NA
WP_005714573.1\|613148_613376_+	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_005714576.1\|613445_613712_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_005714578.1\|613715_613985_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_016527735.1\|614130_615339_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-49	48.1
WP_035498906.1\|615442_615658_+	hypothetical protein	NA	NA	NA	NA
WP_005714514.1\|615860_616136_+	hypothetical protein	NA	NA	NA	NA
WP_005714513.1\|616191_619566_+\|tail	phage tail tape measure protein	A0A0E3JQ03	Enterobacteria_phage	1.5e-61	25.4
WP_020997028.1\|619610_619943_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.6e-13	40.0
WP_038513532.1\|619942_620680_+\|tail	phage minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	1.8e-68	54.1
WP_005713888.1\|620759_621506_+	hypothetical protein	NA	NA	NA	NA
WP_005713886.1\|621505_621886_+	hypothetical protein	NA	NA	NA	NA
WP_005713885.1\|621929_622691_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	2.9e-66	49.8
WP_020997070.1\|622720_623233_+\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	9.7e-26	41.0
WP_020997071.1\|623286_626316_+	host specificity protein J	A0A0M3LQ61	Mannheimia_phage	2.1e-253	49.8
WP_020997072.1\|626278_627157_+	DUF1983 domain-containing protein	A0A0M3LQ61	Mannheimia_phage	1.9e-13	61.1
WP_005713882.1\|627185_627977_+	hypothetical protein	NA	NA	NA	NA
WP_005713881.1\|628317_629274_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
628162:628211	attR	NA	NA	NA	NA
WP_005713879.1\|629411_630779_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_005713877.1\|631283_634100_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	6.1e-77	26.2
WP_005713876.1\|634159_634822_-	AAA family ATPase	NA	NA	NA	NA
WP_005713875.1\|634824_635109_-	hypothetical protein	NA	NA	NA	NA
WP_016527654.1\|635110_636058_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_005713871.1\|636245_637280_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FAD3	Synechococcus_phage	5.0e-69	41.0
WP_005714746.1\|637610_639326_-	hypothetical protein	NA	NA	NA	NA
WP_016527658.1\|639390_639765_-	hypothetical protein	NA	NA	NA	NA
WP_020997073.1\|639730_640336_-	hypothetical protein	NA	NA	NA	NA
WP_005712922.1\|640530_641310_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_005712925.1\|641447_642425_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_005712927.1\|642745_643057_-	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA
WP_005712929.1\|643140_643728_+	hypothetical protein	NA	NA	NA	NA
WP_005712931.1\|643964_644699_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_005712936.1\|644699_645257_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_005712938.1\|645256_645673_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_005712940.1\|645691_647014_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA
WP_005712942.1\|647084_648425_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A1X9I6F4	Streptococcus_phage	2.6e-33	25.8
WP_005712944.1\|648672_650268_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005712947.1\|650361_651366_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005712949.1\|651394_652288_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005712951.1\|652298_653282_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-17	30.0
WP_005712954.1\|653296_654277_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.2e-17	27.3
WP_005712956.1\|654328_654907_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.2e-09	27.8
WP_005712958.1\|654980_655436_-	hypothetical protein	NA	NA	NA	NA
WP_005712959.1\|655552_656293_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_005712961.1\|656383_656836_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_005712963.1\|657198_657876_+	TolC family protein	NA	NA	NA	NA
WP_005712965.1\|658039_658885_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	9.5e-18	25.8
WP_005712967.1\|658899_659247_+	ArsC family reductase	NA	NA	NA	NA
WP_005712969.1\|659333_659954_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_005712971.1\|659957_660152_+	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_005712974.1\|660148_661171_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_005712977.1\|661175_661670_-	hypothetical protein	NA	NA	NA	NA
WP_005712980.1\|661752_664338_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	1.1e-186	42.7
WP_005712985.1\|665050_666982_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.3e-127	37.4

DBSCAN-SWA_3

753171 : 788769

Pseudomonas_phage(12.5%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005711685.1\|753171_754134_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_106382558.1\|754223_755322_-	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	6.3e-06	42.4
WP_005711689.1\|755552_756365_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_005711691.1\|756429_757914_+	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	4.4e-87	38.8
WP_005711692.1\|758029_758728_+	6-phosphogluconolactonase	NA	NA	NA	NA
WP_005711694.1\|758766_759786_+	DUF1016 domain-containing protein	NA	NA	NA	NA
WP_005711696.1\|759794_760154_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_005714908.1\|760184_761171_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	9.7e-22	32.7
WP_012621943.1\|761413_761932_+\|transposase	transposase	NA	NA	NA	NA
WP_005714317.1\|762084_763539_+	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	9.5e-42	28.3
WP_005714318.1\|763821_764592_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	9.2e-36	37.7
WP_005714319.1\|764662_765532_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_005714321.1\|765609_766011_-	ribosome-associated heat shock protein Hsp15	NA	NA	NA	NA
WP_005714322.1\|766186_767449_+	transcription termination factor Rho	NA	NA	NA	NA
WP_005714323.1\|767901_768546_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_005715116.1\|768723_769344_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_005714144.1\|769390_770230_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_005714146.1\|770287_770854_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	NA	NA	NA
WP_035491173.1\|770846_771755_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_005714148.1\|771898_772969_+	DNA polymerase IV	NA	NA	NA	NA
WP_005714149.1\|773074_773926_+\|protease	protease HtpX	NA	NA	NA	NA
WP_021115142.1\|773936_775775_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_005714153.1\|775807_776356_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_035491186.1\|776510_777212_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_005714155.1\|777211_778273_+	molybdenum ABC transporter ATP-binding protein ModC	G3M9Y6	Bacillus_virus	3.6e-22	34.6
WP_005714158.1\|778490_779111_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	4.9e-56	53.1
WP_021109733.1\|779493_780114_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_005714300.1\|780198_781347_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_005714298.1\|781343_782162_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_005714296.1\|782562_783183_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005714294.1\|783192_784482_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_021118361.1\|784747_785515_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_040978604.1\|785514_786375_-	spermidine/putrescine ABC transporter permease PotB	NA	NA	NA	NA
WP_005714293.1\|786361_787474_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	1.9e-29	39.3
WP_020997155.1\|787671_788769_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

884922 : 895848

Mollivirus(11.11%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005710642.1\|884922_886437_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.0e-79	39.2
WP_005710639.1\|886567_887152_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	2.2e-29	40.5
WP_005710637.1\|887168_887822_-	uridine kinase	A0A1V0SAA3	Catovirus	1.5e-34	37.0
WP_005710634.1\|888009_888522_-	endopeptidase	A0A0K2SUC1	Clostridium_phage	7.0e-16	39.1
WP_005710633.1\|888574_888871_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.9e-12	38.9
WP_005710632.1\|888887_891275_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.4e-05	29.9
WP_005714915.1\|891408_892380_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	5.4e-09	28.8
WP_005714554.1\|892592_893576_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.9e-33	37.4
WP_005714552.1\|893885_894566_+	TIGR00153 family protein	NA	NA	NA	NA
WP_005714550.1\|894585_895848_+	inorganic phosphate transporter	E5ES24	Ostreococcus_lucimarinus_virus	1.1e-59	35.7

DBSCAN-SWA_5

951942 : 1006004

Mannheimia_phage(28.57%)

plate,bacteriocin,terminase,transposase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005713710.1\|951942_952185_-	hypothetical protein	A0A0M3LPU3	Mannheimia_phage	3.0e-09	41.0
WP_020997039.1\|952527_952749_-	hypothetical protein	NA	NA	NA	NA
WP_020997221.1\|952763_952949_+	YegP family protein	NA	NA	NA	NA
WP_131320163.1\|952974_953418_-	hypothetical protein	NA	NA	NA	NA
WP_005714539.1\|953865_954312_-	hypothetical protein	NA	NA	NA	NA
WP_005714537.1\|954371_954662_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	2.4e-13	46.6
WP_005714536.1\|954689_955529_-	DUF3800 domain-containing protein	A5X9G9	Aeromonas_virus	1.3e-59	44.6
WP_005714534.1\|955709_956558_-	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	2.8e-70	52.4
WP_005714533.1\|956657_957341_-	helix-turn-helix transcriptional regulator	K7PKK1	Enterobacteria_phage	1.4e-19	31.1
WP_005714531.1\|957471_957672_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016527921.1\|958007_958733_+	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	1.7e-28	39.8
WP_020997223.1\|958729_959560_+	hypothetical protein	A0A1X9SFR3	Acinetobacter_phage	7.1e-34	37.4
WP_005715017.1\|959559_960231_+	replication protein P	A0A1P8DTF3	Proteus_phage	2.9e-30	38.3
WP_005715214.1\|960292_960721_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.9e-43	58.6
WP_005715065.1\|960754_961168_-	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	6.8e-38	55.5
WP_005715063.1\|961194_961377_-	addiction module toxin, HicA family	A0A0D4DC32	Acinetobacter_phage	4.5e-18	74.6
WP_035703519.1\|961624_962194_+	NinG recombination protein	A0A0U4KL68	Pseudomonas_phage	8.2e-50	55.1
WP_020997228.1\|962190_962568_+	sigma-70 family RNA polymerase sigma factor	Q7Y5V5	Haemophilus_phage	2.3e-08	28.7
WP_112065003.1\|962624_963833_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-49	48.1
WP_005714782.1\|963899_964118_-	hypothetical protein	NA	NA	NA	NA
WP_005714778.1\|964972_965536_-	hypothetical protein	NA	NA	NA	NA
WP_035494818.1\|965661_965925_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	1.3e-18	70.6
WP_112065004.1\|965899_966445_+	lysozyme	Q19UR6	Mannheimia_phage	4.2e-43	49.7
WP_021109620.1\|966417_966762_+	DUF2570 domain-containing protein	A0A0M3LSP1	Mannheimia_phage	4.9e-05	59.8
WP_080731404.1\|966790_966940_+	lytic transglycosylase	A0A0M3LSZ0	Mannheimia_phage	6.3e-18	81.6
WP_005715031.1\|967326_967842_+\|terminase	terminase small subunit	A0A0M3LPC3	Mannheimia_phage	7.7e-55	70.4
WP_040978479.1\|967825_969043_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	2.0e-194	80.4
WP_005713544.1\|969048_970569_+	DUF1073 domain-containing protein	I7B6L5	Escherichia_phage	2.0e-106	45.7
WP_005713545.1\|970531_971398_+\|capsid	minor capsid protein	Q7Y5U5	Haemophilus_phage	6.3e-09	29.3
WP_005713547.1\|971497_972769_+	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	1.3e-42	44.5
WP_005713548.1\|972780_973293_+	hypothetical protein	NA	NA	NA	NA
WP_005713549.1\|973313_974447_+	DUF2184 domain-containing protein	I6ZXX2	Escherichia_phage	8.1e-73	44.0
WP_005713552.1\|974510_974876_+	hypothetical protein	Q6IWU7	Burkholderia_phage	6.3e-11	37.0
WP_005713553.1\|974878_975307_+	DUF4054 domain-containing protein	A1Z019	Burkholderia_virus	5.8e-24	44.8
WP_005713554.1\|975303_975804_+	hypothetical protein	M4SN98	Psychrobacter_phage	8.9e-08	27.8
WP_035494989.1\|975974_976361_+	hypothetical protein	A9YX01	Burkholderia_phage	4.3e-26	43.8
WP_020997284.1\|976912_977293_+	hypothetical protein	K4I3A0	Acinetobacter_phage	5.2e-16	35.2
WP_005713566.1\|977277_977784_+	hypothetical protein	NA	NA	NA	NA
WP_005713567.1\|977793_979272_+	DUF3383 domain-containing protein	A0A068C8K3	Acinetobacter_phage	4.7e-97	43.0
WP_005713568.1\|979339_979783_+	hypothetical protein	NA	NA	NA	NA
WP_005713569.1\|979916_980321_+	hypothetical protein	NA	NA	NA	NA
WP_005713572.1\|980492_982997_+	hypothetical protein	A0A190XCB3	Acinetobacter_phage	1.6e-73	36.0
WP_005713576.1\|983178_983457_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SCV8	Streptococcus_phage	5.1e-13	46.8
WP_005713578.1\|983416_983662_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_005713581.1\|984582_984891_+	hypothetical protein	NA	NA	NA	NA
WP_005713583.1\|984892_985780_+	hypothetical protein	K4I0K5	Acinetobacter_phage	9.2e-48	37.1
WP_106382554.1\|985790_986447_+\|plate	phage baseplate protein	K4HZB6	Acinetobacter_phage	5.6e-34	43.6
WP_005713587.1\|986450_986801_+	hypothetical protein	A0A2R3UAP1	Myoviridae_environmental_samples	2.2e-13	39.5
WP_005713589.1\|986797_987985_+	hypothetical protein	H9C0X9	Aeromonas_phage	1.2e-63	36.1
WP_005713594.1\|987981_988599_+	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	6.4e-24	37.5
WP_112065005.1\|990836_991403_+	DUF4376 domain-containing protein	F6MIL9	Haemophilus_phage	3.1e-97	90.4
WP_112065006.1\|991395_991857_+	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	2.9e-85	94.1
WP_005714863.1\|992035_992335_-	hypothetical protein	NA	NA	NA	NA
WP_005714861.1\|992331_992841_-	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	2.7e-20	36.5
WP_005714408.1\|993357_994638_-	hypothetical protein	NA	NA	NA	NA
WP_005714406.1\|994758_995166_-	hypothetical protein	NA	NA	NA	NA
WP_005714404.1\|995165_995360_-	hypothetical protein	NA	NA	NA	NA
WP_035703524.1\|995526_996057_-	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_005714398.1\|996277_997075_-	hypothetical protein	NA	NA	NA	NA
WP_012621817.1\|997464_997683_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	5.2e-21	77.8
WP_005712171.1\|997826_998090_-	hypothetical protein	NA	NA	NA	NA
WP_005712172.1\|998058_998703_-	N-6 DNA methylase	NA	NA	NA	NA
WP_005712174.1\|998704_999487_-	hypothetical protein	NA	NA	NA	NA
WP_112065007.1\|999523_1000333_-	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	3.3e-36	66.3
WP_010786201.1\|1000676_1000865_+	hypothetical protein	Q19US2	Mannheimia_phage	7.4e-08	50.0
WP_005714752.1\|1000906_1001521_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	6.3e-88	77.7
WP_005714753.1\|1001517_1002384_-	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	4.8e-57	54.9
WP_016527910.1\|1002393_1003326_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	7.9e-74	53.8
WP_005714736.1\|1003340_1003478_-	hypothetical protein	NA	NA	NA	NA
WP_005714734.1\|1003464_1004004_-	hypothetical protein	A0A0M3LSK4	Mannheimia_phage	1.6e-23	45.3
WP_005714732.1\|1004000_1004321_-	hypothetical protein	NA	NA	NA	NA
WP_005714731.1\|1004403_1005030_-\|bacteriocin	bacteriocin	A0A0P0ZCS0	Stx2-converting_phage	3.3e-15	45.5
WP_005714812.1\|1005290_1006004_-	serine/threonine-protein phosphatase	I6PCV8	Cronobacter_phage	5.5e-51	44.7

DBSCAN-SWA_6

1010647 : 1042119

Mannheimia_phage(74.29%)

tail,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005714960.1\|1010647_1011301_-	helix-turn-helix domain-containing protein	A0A0M3LSL8	Mannheimia_phage	4.8e-70	69.0
WP_005714958.1\|1011436_1011643_+	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	8.2e-08	45.3
WP_020997037.1\|1011663_1011939_+	bacteriophage CII family protein	NA	NA	NA	NA
WP_035703224.1\|1011983_1012670_+	antirepressor	D0UIL6	Aggregatibacter_phage	4.2e-64	57.1
WP_020997035.1\|1012666_1013491_+	bacteriophage replication O family protein	A0A0M3LS90	Mannheimia_phage	2.6e-28	65.0
WP_020997224.1\|1013490_1014162_+	replication P family protein	A0A1P8DTF3	Proteus_phage	1.0e-30	38.9
WP_005714434.1\|1014162_1014723_+	N-6-adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.4e-49	53.5
WP_112065008.1\|1015024_1015474_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.2e-43	60.0
WP_005714429.1\|1015507_1015915_-	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	8.8e-38	54.8
WP_005714427.1\|1015953_1016136_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_005714426.1\|1016226_1016517_+	DUF1364 domain-containing protein	A0A0M3LQ97	Mannheimia_phage	1.0e-43	89.1
WP_005714425.1\|1016513_1016918_+	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	1.1e-21	43.5
WP_005714424.1\|1016914_1017292_+	antitermination protein	Q7Y5V5	Haemophilus_phage	4.4e-07	27.9
WP_005714422.1\|1017300_1017486_-	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	7.3e-08	49.1
WP_005714420.1\|1017868_1018327_+	hypothetical protein	NA	NA	NA	NA
WP_005714419.1\|1018413_1018611_-	hypothetical protein	NA	NA	NA	NA
WP_005714418.1\|1018655_1019483_+	hypothetical protein	Q0H8C7	Salmonella_phage	9.8e-60	46.8
WP_020996994.1\|1019986_1020250_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	1.3e-18	70.6
WP_020996993.1\|1020224_1020770_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	2.1e-42	48.2
WP_040978490.1\|1020742_1021087_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_016527927.1\|1021115_1021265_+	hypothetical protein	A0A0M3LSZ0	Mannheimia_phage	3.4e-16	78.7
WP_020996990.1\|1021433_1021949_+\|terminase	terminase small subunit	A0A0M3LPC3	Mannheimia_phage	4.1e-56	72.8
WP_035703164.1\|1021932_1023168_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	9.1e-195	80.2
WP_106381479.1\|1023198_1024575_+	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	2.7e-163	65.5
WP_020996988.1\|1024531_1026277_+\|capsid	minor capsid protein	A0A0M3LQ07	Mannheimia_phage	1.6e-136	70.3
WP_005714619.1\|1026273_1026480_+	hypothetical protein	NA	NA	NA	NA
WP_160415202.1\|1026602_1027181_+	hypothetical protein	A0A0M3LQ07	Mannheimia_phage	5.6e-54	55.7
WP_005714623.1\|1027180_1027399_+	hypothetical protein	A0A0M3LPI7	Mannheimia_phage	8.9e-29	80.6
WP_005714625.1\|1027398_1027818_+	HD domain-containing protein	D0UIJ3	Aggregatibacter_phage	1.8e-41	66.2
WP_005714627.1\|1027993_1028515_+	ATPase	A0A0M3LR56	Mannheimia_phage	1.5e-34	53.5
WP_016527888.1\|1028639_1029398_+	hypothetical protein	A0A0M3LQV7	Mannheimia_phage	6.8e-76	72.9
WP_020996987.1\|1029409_1030348_+	Ig domain-containing protein	A0A0D4DBM4	Acinetobacter_phage	3.5e-114	64.1
WP_005714837.1\|1030433_1030775_+	hypothetical protein	NA	NA	NA	NA
WP_112065009.1\|1030749_1031211_+	hypothetical protein	A0A0M3LSP7	Mannheimia_phage	2.3e-34	55.9
WP_005714843.1\|1031213_1031564_+	hypothetical protein	A0A0M3LT14	Mannheimia_phage	7.4e-25	51.3
WP_020997023.1\|1031560_1031764_+	HK97 gp10 family phage protein	A0A0M3LPJ5	Mannheimia_phage	5.2e-07	55.8
WP_005713940.1\|1031807_1031999_-	hypothetical protein	NA	NA	NA	NA
WP_005713942.1\|1032142_1032574_-	hypothetical protein	NA	NA	NA	NA
WP_005713944.1\|1032566_1033085_-	hypothetical protein	NA	NA	NA	NA
WP_005713952.1\|1036140_1036488_+	hypothetical protein	NA	NA	NA	NA
WP_005713954.1\|1036497_1036959_-	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	1.0e-42	62.0
WP_005713956.1\|1036999_1037434_-\|tail	phage tail protein	Q19UR3	Mannheimia_phage	4.7e-37	54.2
WP_005713957.1\|1037430_1037649_-	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	3.6e-22	72.6
WP_005713958.1\|1037761_1038181_-	hypothetical protein	NA	NA	NA	NA
WP_005713959.1\|1038177_1038375_-	hypothetical protein	NA	NA	NA	NA
WP_005713960.1\|1038433_1038628_-	hypothetical protein	NA	NA	NA	NA
WP_005713962.1\|1038836_1039304_-	hypothetical protein	NA	NA	NA	NA
WP_005713963.1\|1039288_1039813_-	lysozyme	A0A0M3LQY4	Mannheimia_phage	7.6e-50	56.8
WP_005713964.1\|1039796_1039934_-	hypothetical protein	NA	NA	NA	NA
WP_005713968.1\|1040623_1040827_-	hypothetical protein	NA	NA	NA	NA
WP_005713970.1\|1040839_1041655_-\|capsid	GPO family capsid scaffolding protein	A0A0M3LSA0	Mannheimia_phage	2.8e-51	44.5
WP_005713972.1\|1041822_1042119_+\|terminase	terminase, ATPase subunit	A0A0M3LRV4	Mannheimia_phage	2.4e-21	59.8

DBSCAN-SWA_7

1158989 : 1208105

Mannheimia_phage(68.09%)

tail,bacteriocin,terminase,capsid,integrase

attL 1156893:1156914|attR 1212884:1212905

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1156893:1156914	attL	NA	NA	NA	NA
WP_005712894.1\|1158989_1159292_+	type II toxin-antitoxin system HigB family toxin	F5A3A2	Riemerella_phage	2.3e-11	37.6
WP_005712896.1\|1159301_1159664_+	hypothetical protein	A0A222YXG1	Escherichia_phage	2.4e-34	61.5
WP_020997002.1\|1159705_1159852_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_005712900.1\|1159928_1160327_+	DUF423 domain-containing protein	NA	NA	NA	NA
WP_005712903.1\|1160684_1161509_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_005712905.1\|1161516_1163436_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.6e-36	28.9
WP_005712907.1\|1163561_1163891_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_005712908.1\|1164193_1165192_+\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	2.3e-103	57.4
WP_005712911.1\|1165188_1165479_-	hypothetical protein	A0A0M3LP12	Mannheimia_phage	6.8e-08	34.8
WP_005712913.1\|1165510_1165804_-	hypothetical protein	NA	NA	NA	NA
WP_005712915.1\|1166010_1166637_-\|bacteriocin	bacteriocin	A0A0P0ZCS0	Stx2-converting_phage	3.4e-12	46.3
WP_005714408.1\|1166908_1168189_-	hypothetical protein	NA	NA	NA	NA
WP_005714406.1\|1168309_1168717_-	hypothetical protein	NA	NA	NA	NA
WP_005714404.1\|1168716_1168911_-	hypothetical protein	NA	NA	NA	NA
WP_035703524.1\|1169077_1169608_-	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_005714398.1\|1169828_1170626_-	hypothetical protein	NA	NA	NA	NA
WP_012621817.1\|1171015_1171234_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	5.2e-21	77.8
WP_035498484.1\|1171377_1171641_-	hypothetical protein	NA	NA	NA	NA
WP_112065015.1\|1171664_1172384_-	polymer-forming cytoskeletal protein	A0A0M3LPL3	Mannheimia_phage	9.5e-35	71.8
WP_010786201.1\|1172727_1172916_+	hypothetical protein	Q19US2	Mannheimia_phage	7.4e-08	50.0
WP_005714752.1\|1172957_1173572_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	6.3e-88	77.7
WP_005714753.1\|1173568_1174435_-	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	4.8e-57	54.9
WP_016527910.1\|1174444_1175377_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	7.9e-74	53.8
WP_005714736.1\|1175391_1175529_-	hypothetical protein	NA	NA	NA	NA
WP_005714734.1\|1175515_1176055_-	hypothetical protein	A0A0M3LSK4	Mannheimia_phage	1.6e-23	45.3
WP_005714732.1\|1176051_1176372_-	hypothetical protein	NA	NA	NA	NA
WP_005714731.1\|1176454_1177081_-\|bacteriocin	bacteriocin	A0A0P0ZCS0	Stx2-converting_phage	3.3e-15	45.5
WP_005714998.1\|1177608_1177797_+	hypothetical protein	A0A0M3LS93	Mannheimia_phage	1.8e-06	49.1
WP_005715000.1\|1177908_1178241_+	hypothetical protein	NA	NA	NA	NA
WP_112065016.1\|1178313_1178955_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_020997039.1\|1179372_1179594_-	hypothetical protein	NA	NA	NA	NA
WP_010786728.1\|1179608_1179779_+	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_131320163.1\|1179805_1180249_-	hypothetical protein	NA	NA	NA	NA
WP_005714819.1\|1180613_1181078_-	hypothetical protein	NA	NA	NA	NA
WP_005714821.1\|1181061_1182009_-	hypothetical protein	NA	NA	NA	NA
WP_005714942.1\|1182074_1182767_-	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	2.7e-79	61.5
WP_005714943.1\|1182887_1183112_+	hypothetical protein	A0A0M3LQ90	Mannheimia_phage	3.4e-23	73.6
WP_020997223.1\|1184171_1185002_+	hypothetical protein	A0A1X9SFR3	Acinetobacter_phage	7.1e-34	37.4
WP_005715017.1\|1185001_1185673_+	replication protein P	A0A1P8DTF3	Proteus_phage	2.9e-30	38.3
WP_016527566.1\|1185734_1186163_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	8.7e-44	59.3
WP_035490314.1\|1186159_1186513_+	hypothetical protein	NA	NA	NA	NA
WP_040978505.1\|1186656_1187235_+	NinG recombination protein	A0A0U4KL68	Pseudomonas_phage	7.1e-49	54.0
WP_005714692.1\|1187224_1187590_+	hypothetical protein	A0A0M3LR87	Mannheimia_phage	5.6e-44	73.6
WP_005714695.1\|1187557_1187752_-	hypothetical protein	A0A0M3LS93	Mannheimia_phage	1.8e-12	66.7
WP_005714422.1\|1188053_1188239_-	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	7.3e-08	49.1
WP_005714700.1\|1188807_1189497_+	hypothetical protein	D0UIK6	Aggregatibacter_phage	4.5e-42	40.3
WP_005714703.1\|1189726_1189906_+	hypothetical protein	NA	NA	NA	NA
WP_005714705.1\|1189898_1190363_-	hypothetical protein	NA	NA	NA	NA
WP_035494818.1\|1190478_1190742_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	1.3e-18	70.6
WP_026916880.1\|1190716_1191262_+	lysozyme	Q19UR6	Mannheimia_phage	7.2e-43	49.7
WP_020997293.1\|1191234_1191579_+	DUF2570 domain-containing protein	A0A0M3LSP1	Mannheimia_phage	8.3e-05	58.9
WP_020997292.1\|1191541_1191745_+	hypothetical protein	A0A0M3LNX0	Mannheimia_phage	3.4e-22	71.9
WP_020997291.1\|1191907_1192360_+\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	8.6e-34	57.9
WP_112065017.1\|1192343_1193579_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	9.1e-195	80.2
WP_106381479.1\|1193609_1194986_+	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	2.7e-163	65.5
WP_112065018.1\|1194942_1196727_+\|capsid	minor capsid protein	A0A0M3LQ07	Mannheimia_phage	8.1e-136	69.1
WP_112065019.1\|1196941_1197595_+	hypothetical protein	A0A0M3LQV7	Mannheimia_phage	2.5e-58	60.8
WP_020996987.1\|1197606_1198545_+	Ig domain-containing protein	A0A0D4DBM4	Acinetobacter_phage	3.5e-114	64.1
WP_005714837.1\|1198630_1198972_+	hypothetical protein	NA	NA	NA	NA
WP_005714843.1\|1199410_1199761_+	hypothetical protein	A0A0M3LT14	Mannheimia_phage	7.4e-25	51.3
WP_020997067.1\|1199757_1200171_+	HK97 gp10 family phage protein	A0A0M3LPJ5	Mannheimia_phage	2.7e-42	61.0
WP_005714381.1\|1200170_1200572_+	hypothetical protein	A0A0M3LQB6	Mannheimia_phage	4.5e-34	51.5
WP_005714382.1\|1200574_1201579_+	hypothetical protein	A0A0M3LQ19	Mannheimia_phage	9.5e-134	72.2
WP_005714383.1\|1201673_1202078_+	hypothetical protein	A0A0M3LPJ3	Mannheimia_phage	1.3e-41	64.2
WP_005714384.1\|1202086_1202422_+	hypothetical protein	A0A0M3LQT0	Mannheimia_phage	1.0e-31	65.4
WP_005714385.1\|1202423_1202750_+\|tail	phage tail protein	A0A0M3LQW6	Mannheimia_phage	1.4e-38	64.5
WP_005714386.1\|1202803_1203064_+	hypothetical protein	NA	NA	NA	NA
WP_020997068.1\|1203138_1206378_+	tape measure protein	A0A0M3LS69	Mannheimia_phage	8.9e-165	37.7
WP_112065020.1\|1206387_1207125_+\|tail	phage minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	3.9e-68	54.1
WP_005714478.1\|1207121_1207403_-	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	2.3e-08	36.6
WP_005714476.1\|1207414_1207693_-	peptidase	A0A0M3LQB1	Mannheimia_phage	4.0e-18	50.0
WP_005714475.1\|1207763_1208105_+	NLP/P60 protein	K7PLW1	Enterobacteria_phage	1.9e-25	54.9
1212884:1212905	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1239423 : 1254450

Bacillus_virus(11.11%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005712606.1\|1239423_1241667_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	7.4e-86	35.5
WP_026916468.1\|1241700_1243029_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.3e-42	39.1
WP_005712610.1\|1243142_1244405_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	9.6e-99	52.3
WP_005712612.1\|1244758_1245769_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_005712614.1\|1245915_1246194_+	peptidase	A0A0M3LQB1	Mannheimia_phage	5.3e-18	50.0
WP_005712616.1\|1246204_1246477_+	HigA family addiction module antidote protein	A0A2P1MXE5	Escherichia_phage	2.2e-08	42.5
WP_005712618.1\|1246540_1247761_+	ATP-dependent RNA helicase RhlB	E3T5E1	Cafeteria_roenbergensis_virus	2.0e-40	31.1
WP_005714908.1\|1248165_1249152_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	9.7e-22	32.7
WP_021114868.1\|1249358_1250573_-	ATP-binding protein	NA	NA	NA	NA
WP_005714441.1\|1250779_1251319_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.2e-42	55.2
WP_005714443.1\|1251621_1254450_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.9e-304	55.7

DBSCAN-SWA_9

1813707 : 1883539

Bacillus_phage(12.5%)

protease,tRNA,head,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005710430.1\|1813707_1814922_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_005710428.1\|1814924_1815812_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_005710426.1\|1816094_1817393_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	9.3e-73	36.4
WP_005710425.1\|1817556_1818774_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_005710423.1\|1818850_1819225_+	Soluble cytochrome b562	NA	NA	NA	NA
WP_005710422.1\|1819533_1819848_-	hypothetical protein	NA	NA	NA	NA
WP_005710420.1\|1819871_1820426_-	hypothetical protein	NA	NA	NA	NA
WP_131262432.1\|1820409_1821009_-	hypothetical protein	NA	NA	NA	NA
WP_020997243.1\|1821071_1821653_-	ftsK/SpoIIIE family protein	NA	NA	NA	NA
WP_005710415.1\|1821657_1822299_-	hypothetical protein	NA	NA	NA	NA
WP_005710413.1\|1822649_1822853_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_005710411.1\|1822857_1825005_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.0e-96	34.4
WP_005710409.1\|1825487_1826927_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_005710407.1\|1827632_1827971_+	hypothetical protein	NA	NA	NA	NA
WP_005710405.1\|1827974_1828283_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005710403.1\|1828483_1829644_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_005710402.1\|1829743_1830325_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_005710401.1\|1830385_1831321_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.0e-41	37.4
WP_005710400.1\|1831320_1831809_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_005710399.1\|1832334_1833633_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_005710398.1\|1833717_1834251_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	2.6e-21	32.3
WP_005710397.1\|1834339_1834978_-	nitroreductase family protein	NA	NA	NA	NA
WP_005710396.1\|1834990_1835791_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-13	29.9
WP_005710395.1\|1835963_1837043_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_005710394.1\|1837148_1838324_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_005710393.1\|1838562_1839951_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_005710392.1\|1840115_1840310_-	heme exporter protein CcmD	NA	NA	NA	NA
WP_005710391.1\|1840318_1841059_-	heme ABC transporter permease	NA	NA	NA	NA
WP_005710389.1\|1841105_1841768_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_005710387.1\|1841777_1842404_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	NA	NA	NA
WP_005710385.1\|1842404_1843115_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_005710383.1\|1843207_1843891_-	nicotinamide riboside transporter PnuC	U5J9C5	Bacillus_phage	1.0e-38	37.8
WP_005710381.1\|1844030_1845812_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	8.8e-66	32.2
WP_005710378.1\|1846029_1847895_+	signal peptide peptidase SppA	A0A2H4UUF9	Bodo_saltans_virus	3.5e-12	23.1
WP_005710376.1\|1848030_1849032_+	DUF4115 domain-containing protein	NA	NA	NA	NA
WP_005710374.1\|1849033_1850143_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_005710372.1\|1850150_1851113_+	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	1.1e-75	45.0
WP_005710371.1\|1851109_1852177_+	hypothetical protein	NA	NA	NA	NA
WP_005710369.1\|1852186_1853176_+	2-hydroxyacid dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.4e-65	40.4
WP_005710367.1\|1853270_1854098_-	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA
WP_005710365.1\|1854941_1855925_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_026916774.1\|1856637_1857534_-	transcriptional regulator GcvA	Q6JIH3	Burkholderia_virus	7.2e-24	30.2
WP_005710363.1\|1857974_1858994_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_005710362.1\|1859062_1859407_+	RidA family protein	NA	NA	NA	NA
WP_005714908.1\|1865630_1866617_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	9.7e-22	32.7
WP_005711508.1\|1866743_1871210_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_005711506.1\|1871426_1872854_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005711500.1\|1875526_1876276_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-32	39.2
WP_005711498.1\|1876278_1876995_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_005711496.1\|1876984_1877767_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005711490.1\|1880205_1880640_+	hypothetical protein	NA	NA	NA	NA
WP_096334851.1\|1881396_1881966_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.5e-54	59.5
WP_005711482.1\|1881966_1883184_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	3.4e-141	60.9
WP_005711477.1\|1883167_1883539_+\|head	phage head closure protein	A0A2I7SC03	Paenibacillus_phage	2.4e-05	28.2

DBSCAN-SWA_10

2116683 : 2220242

117

Haemophilus_phage(77.59%)

tail,tRNA,protease,plate,terminase,transposase,integrase,capsid

attL 2163918:2163977|attR 2225299:2225875

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005711727.1\|2116683_2119548_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.5e-147	37.7
WP_005711729.1\|2119561_2119954_-	hypothetical protein	NA	NA	NA	NA
WP_005711731.1\|2120237_2120831_-	hypothetical protein	NA	NA	NA	NA
WP_005711736.1\|2121442_2121763_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005711739.1\|2122870_2123227_+	hypothetical protein	NA	NA	NA	NA
WP_005711741.1\|2123326_2124151_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_005711743.1\|2124147_2125344_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_005711745.1\|2125363_2126833_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	1.6e-33	38.9
WP_005711747.1\|2126845_2127847_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.8e-53	38.4
WP_005711749.1\|2127848_2128448_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-35	42.9
WP_005711751.1\|2128459_2130001_-	anthranilate synthase component 1	NA	NA	NA	NA
WP_005711753.1\|2130312_2131830_-	LTA synthase family protein	NA	NA	NA	NA
WP_005711758.1\|2132552_2133572_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_005711759.1\|2133741_2134362_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_005711765.1\|2135574_2135964_-	hypothetical protein	NA	NA	NA	NA
WP_005711766.1\|2136064_2136646_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.9e-62	62.9
WP_005711769.1\|2136652_2137903_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.5e-120	54.2
WP_005711772.1\|2137976_2139110_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_005711775.1\|2139193_2139862_-	peptidase	NA	NA	NA	NA
WP_005711777.1\|2139858_2141055_-	type II secretion system F family protein	NA	NA	NA	NA
WP_005711779.1\|2141047_2142433_-	type II/IV secretion system protein	NA	NA	NA	NA
WP_005711781.1\|2142480_2142945_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_005711784.1\|2143132_2144509_+	DNA repair protein RadA	NA	NA	NA	NA
WP_005711785.1\|2144561_2145188_-	guanylate kinase	A0A218KC48	Bacillus_phage	6.1e-14	33.5
WP_005714915.1\|2145256_2146228_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	5.4e-09	28.8
WP_005714020.1\|2146628_2147108_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_005714021.1\|2147287_2148742_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA
WP_005714023.1\|2148785_2149460_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	2.0e-58	57.7
WP_005714024.1\|2149687_2150545_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	3.2e-53	37.6
WP_005714026.1\|2150722_2151307_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_005714028.1\|2152043_2152895_-	thymidylate synthase	H9EB68	Vibrio_phage	1.1e-122	73.5
WP_005714030.1\|2152984_2153509_+	hypothetical protein	NA	NA	NA	NA
WP_005714031.1\|2153669_2154428_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005714033.1\|2154572_2155340_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_005714034.1\|2155458_2157042_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021110055.1\|2157187_2158132_+	ABC transporter permease	NA	NA	NA	NA
WP_005714038.1\|2158128_2158911_+	ABC transporter permease	NA	NA	NA	NA
WP_005714039.1\|2159136_2160546_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_005714041.1\|2160571_2161258_-	M15 family metallopeptidase	NA	NA	NA	NA
WP_112065029.1\|2161393_2161996_+	hypothetical protein	NA	NA	NA	NA
WP_162627885.1\|2161961_2163497_+	hypothetical protein	NA	NA	NA	NA
2163918:2163977	attL	NA	NA	NA	NA
WP_005714765.1\|2164552_2164999_-	hypothetical protein	NA	NA	NA	NA
WP_005714767.1\|2165000_2166035_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_005714769.1\|2166201_2166534_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_112065031.1\|2166569_2166758_+	hypothetical protein	NA	NA	NA	NA
WP_005714453.1\|2166821_2168591_+	site-specific DNA-methyltransferase	S5VTV9	Campylobacter_phage	5.0e-29	28.5
WP_005714455.1\|2168601_2171220_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_021110020.1\|2171402_2172536_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_005714592.1\|2172898_2173486_-	azoreductase	NA	NA	NA	NA
WP_005714590.1\|2173686_2174178_-	hypothetical protein	NA	NA	NA	NA
WP_005714588.1\|2174164_2174344_-	hypothetical protein	NA	NA	NA	NA
WP_005714586.1\|2174583_2174844_+	hypothetical protein	F6MIM3	Haemophilus_phage	1.6e-40	97.7
WP_005714585.1\|2174884_2175718_-	hypothetical protein	F6MIM2	Haemophilus_phage	6.2e-163	100.0
WP_112065032.1\|2175740_2176220_-	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	1.7e-85	94.2
WP_112065033.1\|2176212_2176779_-	DUF4376 domain-containing protein	F6MIL9	Haemophilus_phage	3.5e-101	95.2
WP_112065034.1\|2176788_2178435_-\|tail	phage tail protein	F6MIL8	Haemophilus_phage	6.0e-303	92.3
WP_005711890.1\|2178447_2179026_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	6.1e-109	99.0
WP_005711892.1\|2179022_2180084_-\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	5.2e-191	97.2
WP_021115447.1\|2180095_2180446_-	mu bacteriophage protein gp46	F6MIL5	Haemophilus_phage	1.2e-59	99.1
WP_005711896.1\|2180550_2181201_-\|plate	phage baseplate assembly protein V	F6MIL4	Haemophilus_phage	2.5e-95	86.1
WP_005711897.1\|2181197_2182322_-	hypothetical protein	F6MIL3	Haemophilus_phage	4.2e-199	97.3
WP_005711899.1\|2182326_2183682_-	hypothetical protein	F6MIL2	Haemophilus_phage	1.3e-247	94.5
WP_005711900.1\|2183682_2186046_-\|tail	phage tail length tape measure protein	F6MIL1	Haemophilus_phage	0.0e+00	97.8
WP_020997281.1\|2186091_2186286_-	hypothetical protein	F6MIL0	Haemophilus_phage	6.7e-20	100.0
WP_005711904.1\|2186315_2186672_-	hypothetical protein	F6MIK9	Haemophilus_phage	1.9e-60	100.0
WP_005711906.1\|2186671_2187046_-\|tail	phage tail protein	F6MIK8	Haemophilus_phage	7.3e-63	99.2
WP_106381483.1\|2187055_2188471_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	3.9e-250	97.4
WP_005711909.1\|2188480_2188660_-	DUF2635 domain-containing protein	B7SDP7	Haemophilus_phage	1.4e-24	93.2
WP_005711911.1\|2188649_2189297_-	DUF1834 family protein	B7SDP5	Haemophilus_phage	4.9e-107	94.3
WP_005711913.1\|2189293_2189770_-	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	8.3e-80	96.2
WP_005711915.1\|2189772_2190126_-	hypothetical protein	B7SDP3	Haemophilus_phage	2.9e-53	93.2
WP_005711917.1\|2190181_2191105_-\|tail	tail sheath protein	B7SDP1	Haemophilus_phage	2.5e-173	98.7
WP_035703642.1\|2191104_2192181_-	hypothetical protein	B7SDN9	Haemophilus_phage	7.2e-196	98.3
WP_005711921.1\|2192420_2192885_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	7.0e-39	58.4
WP_005711923.1\|2192995_2194312_-\|capsid	minor capsid protein	B7SDN5	Haemophilus_phage	5.4e-121	54.2
WP_005711925.1\|2194301_2195948_-	DUF935 domain-containing protein	B7SDN1	Haemophilus_phage	1.3e-292	90.2
WP_005711927.1\|2196034_2197651_-\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	0.0e+00	98.9
WP_005711932.1\|2197753_2198263_-	DUF1804 family protein	F6MIK6	Haemophilus_phage	3.6e-89	100.0
WP_005711934.1\|2198263_2198518_-	hypothetical protein	F6MIK5	Haemophilus_phage	3.2e-22	100.0
WP_005711935.1\|2198514_2198775_-	hypothetical protein	F6MIK4	Haemophilus_phage	2.4e-12	92.7
WP_005711937.1\|2198767_2198926_-	hypothetical protein	F6MIK3	Haemophilus_phage	8.7e-18	86.5
WP_005711939.1\|2198937_2199291_-	DUF2681 domain-containing protein	F6MIK1	Haemophilus_phage	1.3e-50	98.3
WP_005711941.1\|2199287_2199518_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	1.1e-34	100.0
WP_005711942.1\|2199573_2200116_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	2.9e-105	99.4
WP_005711943.1\|2200194_2200620_-	hypothetical protein	F6MIJ8	Haemophilus_phage	1.1e-75	100.0
WP_035520840.1\|2200789_2201329_-	hypothetical protein	F6MIJ7	Haemophilus_phage	2.0e-98	100.0
WP_005711947.1\|2201420_2201843_-	regulatory protein GemA	F6MIJ6	Haemophilus_phage	1.3e-71	96.4
WP_005711948.1\|2201823_2202387_-	hypothetical protein	F6MIJ5	Haemophilus_phage	1.4e-97	96.3
WP_005711951.1\|2202554_2202932_-	hypothetical protein	F6MIJ4	Haemophilus_phage	8.7e-64	96.8
WP_005711953.1\|2202933_2203494_-	DUF5420 family protein	A0A0M3LP85	Mannheimia_phage	1.2e-24	38.0
WP_005711955.1\|2203486_2203798_-	hypothetical protein	F6MIJ3	Haemophilus_phage	1.6e-47	92.2
WP_005711957.1\|2204092_2204614_-	host-nuclease inhibitor protein Gam	F6MIJ0	Haemophilus_phage	4.4e-90	98.8
WP_005711958.1\|2204625_2204919_-	hypothetical protein	F6MII9	Haemophilus_phage	2.1e-49	97.9
WP_005711959.1\|2204920_2205112_-	hypothetical protein	F6MII8	Haemophilus_phage	3.9e-28	100.0
WP_005711960.1\|2205119_2206001_-	AAA family ATPase	F6MII7	Haemophilus_phage	2.3e-160	99.7
WP_005711961.1\|2206084_2206507_-	hypothetical protein	F6MII6	Haemophilus_phage	7.7e-69	98.6
WP_005711962.1\|2206516_2208487_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	F6MII5	Haemophilus_phage	0.0e+00	95.4
WP_005711963.1\|2208497_2208764_-	HTH domain-containing protein	NA	NA	NA	NA
WP_005711965.1\|2208884_2209679_+	transcriptional regulator	NA	NA	NA	NA
WP_005711970.1\|2210425_2210812_-	50S ribosomal protein L17	NA	NA	NA	NA
WP_005711973.1\|2210847_2211837_-	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA
WP_005711975.1\|2211868_2212489_-	30S ribosomal protein S4	NA	NA	NA	NA
WP_005711978.1\|2212517_2212907_-	30S ribosomal protein S11	NA	NA	NA	NA
WP_005599322.1\|2212923_2213280_-	30S ribosomal protein S13	NA	NA	NA	NA
WP_005705974.1\|2213418_2213532_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_005711980.1\|2213556_2214879_-	preprotein translocase subunit SecY	NA	NA	NA	NA
WP_005711981.1\|2214882_2215317_-	50S ribosomal protein L15	NA	NA	NA	NA
WP_005711983.1\|2215321_2215501_-	50S ribosomal protein L30	NA	NA	NA	NA
WP_005711985.1\|2215507_2216008_-	30S ribosomal protein S5	NA	NA	NA	NA
WP_005711987.1\|2216022_2216376_-	50S ribosomal protein L18	NA	NA	NA	NA
WP_005711990.1\|2216390_2216924_-	50S ribosomal protein L6	NA	NA	NA	NA
WP_005711992.1\|2216940_2217333_-	30S ribosomal protein S8	NA	NA	NA	NA
WP_005708075.1\|2217369_2217675_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_005711994.1\|2217686_2218226_-	50S ribosomal protein L5	NA	NA	NA	NA
WP_005711996.1\|2218243_2218555_-	50S ribosomal protein L24	NA	NA	NA	NA
WP_005711998.1\|2218567_2218939_-	50S ribosomal protein L14	NA	NA	NA	NA
WP_035498491.1\|2219144_2220242_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
2225299:2225875	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2224849 : 2286386

Catovirus(13.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112065035.1\|2224849_2226058_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.0e-49	48.7
WP_005713540.1\|2226807_2228595_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	2.8e-43	24.0
WP_005713539.1\|2228700_2229138_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_131266093.1\|2229203_2229389_+	hypothetical protein	NA	NA	NA	NA
WP_005713533.1\|2229979_2231134_+	galactokinase	NA	NA	NA	NA
WP_005713532.1\|2231204_2232194_+	galactose-1-epimerase	NA	NA	NA	NA
WP_005713530.1\|2232194_2232926_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_005713527.1\|2233087_2234011_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_005713525.1\|2234157_2234388_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	1.2e-10	47.1
WP_005713523.1\|2234741_2236457_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_005713521.1\|2236865_2240351_+	S8 family serine peptidase	NA	NA	NA	NA
WP_035703091.1\|2240820_2241633_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	7.9e-46	39.6
WP_005713509.1\|2241644_2241968_-\|transposase	IS3 family transposase	Q716C1	Shigella_phage	9.2e-14	43.4
WP_005713507.1\|2243293_2244154_-	pyridoxal kinase PdxY	NA	NA	NA	NA
WP_015939880.1\|2244588_2244741_-	hypothetical protein	NA	NA	NA	NA
WP_005713504.1\|2244776_2245358_+	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_005713502.1\|2245357_2245957_+	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_005714915.1\|2248086_2249058_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	5.4e-09	28.8
WP_005712807.1\|2249147_2249780_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_005712809.1\|2249810_2250878_+	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_005712810.1\|2250874_2251507_+	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_005712812.1\|2251528_2252218_+	electron transport complex subunit E	NA	NA	NA	NA
WP_005712814.1\|2252227_2253178_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_005712816.1\|2253198_2253948_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005712818.1\|2254287_2255571_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005712820.1\|2255616_2256390_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	9.0e-15	28.0
WP_005712822.1\|2256631_2257618_+	amidohydrolase family protein	A0A076FFX9	Aureococcus_anophage	3.5e-32	30.1
WP_005712823.1\|2257651_2258902_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_005712825.1\|2258901_2259588_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	2.8e-36	39.0
WP_005712827.1\|2259944_2260607_+	carbonate dehydratase	NA	NA	NA	NA
WP_005712828.1\|2260660_2261410_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_080513251.1\|2261820_2261961_+	glutathionylspermidine synthase family protein	I3WVW4	Acinetobacter_phage	2.9e-09	61.0
WP_005712834.1\|2262147_2263443_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.0e-68	37.0
WP_005712836.1\|2263637_2264864_+	uracil-xanthine permease	NA	NA	NA	NA
WP_005712837.1\|2264938_2265379_-	NfeD family protein	NA	NA	NA	NA
WP_005712838.1\|2265388_2266303_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_005712839.1\|2266426_2267563_+	alanine racemase	NA	NA	NA	NA
WP_005712841.1\|2267652_2268843_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_005712844.1\|2269049_2272988_-	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	8.5e-45	25.4
WP_005712846.1\|2273002_2273455_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_005712848.1\|2273518_2273821_-	hypothetical protein	NA	NA	NA	NA
WP_005712850.1\|2273917_2274517_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_035490878.1\|2274696_2276469_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	5.1e-13	30.7
WP_051502698.1\|2276683_2277079_-\|transposase	transposase	NA	NA	NA	NA
WP_021109462.1\|2277069_2277252_-\|transposase	transposase	F6MIM4	Haemophilus_phage	6.5e-25	95.0
WP_005714509.1\|2277608_2281196_-	exodeoxyribonuclease V subunit beta	A7KV33	Bacillus_phage	1.3e-15	22.9
WP_020457506.1\|2282234_2283125_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005713602.1\|2283259_2283703_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_005713609.1\|2284825_2285476_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_015939863.1\|2285452_2285647_-	hypothetical protein	NA	NA	NA	NA
WP_106380366.1\|2285753_2286386_+\|transposase	IS1595 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021644

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection