CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP030172	Klebsiella pneumoniae subsp. pneumoniae strain 12208 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,RT,DinG,WYL	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP030172_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030172_1

3847509-3847604

Orphan

Consensus_repeat	Method
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030172_1

>merge|NZ_CP030172|1|3847509-3847604|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAACCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGTTGGCACTTTGTTGGCATTCTGTTGGCACAA

>NZ_CP030172|1|1|3847509-3847604|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGT
TGGCACTTTGTTGGCATTCTGTTGGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030172.1\|WP_032428632.1\|3843788_3844076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030172.1\|WP_074160390.1\|3845678_3847094_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP030172.1\|WP_059065858.1\|3842885_3843341_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP030172.1\|WP_004194002.1\|3847990_3848137_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030172.1\|WP_032420807.1\|3850657_3851485_+\|DUF3037-domain-containing-protein	unknown	unknown	gnl\|CDD\|378608
NZ_CP030172.1\|WP_063417005.1\|3849911_3850661_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030172.1\|WP_004178811.1\|3848583_3848817_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP030172.1\|WP_004219883.1\|3852053_3852179_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030172.1\|WP_063417010.1\|3844248_3844836_-\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401
NZ_CP030172.1\|WP_063417008.1\|3845385_3845679_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238042
NZ_CP030172.1\|WP_019725100.1\|3851540_3851744_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030172.1\|WP_008807814.1\|3852171_3852378_+\|phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP030172.1\|WP_024622727.1\|3848921_3849611_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP030172.1\|WP_063417009.1\|3844942_3845389_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030172.1\|WP_074160387.1\|3842715_3842886_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP030172.1\|WP_063417011.1\|3842087_3842723_-\|NinG-family-protein	unknown	unknown	gnl\|CDD\|368603
NZ_CP030172.1\|WP_063417004.1\|3852457_3853426_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP030172.1\|WP_043906731.1\|3843531_3843789_-\|DNA-polymerase-III-subunit-theta	unknown	unknown	gnl\|CDD\|368909
NZ_CP030172.1\|WP_004141720.1\|3848223_3848544_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP030172.1\|WP_023283343.1\|3841950_3842091_-\|YlcG-family-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP030172.1\|WP_074160387.1\|3842715_3842886_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.06253e-20
NZ_CP030172.1\|WP_074160390.1\|3845678_3847094_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	1.25009e-157
NZ_CP030172.1\|WP_059065858.1\|3842885_3843341_-\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	8.1849e-79
NZ_CP030172.1\|WP_043906731.1\|3843531_3843789_-\|DNA-polymerase-III-subunit-theta	gnl\|CDD\|368909	pfam06440, DNA_pol3_theta, DNA polymerase III, theta subunit. DNA polymerase III (EC 2.7.7.7) is comprised of three tightly associated subunits, alpha, epsilon and theta. This family contains the theta subunit. The structure of the theta subunit shows that the N-terminal two thirds is comprised of three helices while the C-terminal third is disordered. The function of the theta subunit is poorly understood, but the interaction of the theta subunit with the epsilon subunit is thought to enhance the 3' to 5' exonucleolytic proofreading activity of epsilon.	1.72296e-32
NZ_CP030172.1\|WP_063417008.1\|3845385_3845679_-\|hypothetical-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000416508
NZ_CP030172.1\|WP_032420807.1\|3850657_3851485_+\|DUF3037-domain-containing-protein	gnl\|CDD\|378608	pfam11236, DUF3037, Protein of unknown function (DUF3037). This bacterial family of proteins has no known function.	3.42633e-33
NZ_CP030172.1\|WP_024622727.1\|3848921_3849611_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	5.57279e-29
NZ_CP030172.1\|WP_008807814.1\|3852171_3852378_+\|phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	1.49968e-15
NZ_CP030172.1\|WP_063417010.1\|3844248_3844836_-\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	4.26268e-05
NZ_CP030172.1\|WP_063417011.1\|3842087_3842723_-\|NinG-family-protein	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	1.49228e-59
NZ_CP030172.1\|WP_063417004.1\|3852457_3853426_+\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	2.06382e-08
NZ_CP030172.1\|WP_004178811.1\|3848583_3848817_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	1.28068e-24
NZ_CP030172.1\|WP_004141720.1\|3848223_3848544_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	0.00392054

>NZ_CP030172.1|WP_074160390.1|3845678_3847094_-|AAA-family-ATPase
MTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYSRQHQVIFAEMRQMYRDHKPVDLLTLFDALDSKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNGDLKKATGVMGALIDTNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKTLAKELDCVVVLLTQLNRELEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEEKPTKRGGF
>NZ_CP030172.1|WP_063417008.1|3845385_3845679_-|hypothetical-protein
MTGKDAILNYLKTHKTCSSSDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEISGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP030172.1|WP_063417009.1|3844942_3845389_-|hypothetical-protein
MTITLQAVNELIASLASAGELSIKETKVMALAKAYQQLAAENVVMIRLLTDISENHVEYYSEGEDGMFAGVPLDYVSEINMYVSRDVNAENPFTATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGVALAADDFAKQLREGEDK
>NZ_CP030172.1|WP_063417010.1|3844248_3844836_-|ead/Ea22-like-family-protein
MTDITELAQSLKAAAEHYQSVQGIARYSKTADAKERFLELANPANILALVEALENANRYIERLREWNAGLAQESCERQQLISELEPIRAAAEKLVRCKGRYHSEQNYRALAALFGVKTPDLPPLEHENVHYADAAEMEIAALRQRIAELESRTVKLPDLRQIVSGDRYVWSDGVYNYSQDVKVALAAAGIKVEAE
>NZ_CP030172.1|WP_032428632.1|3843788_3844076_-|hypothetical-protein
MKKKKLSSKQQYQLDVELVKIKPTNRTEAKAHLAAQLRISKFKSKGRRGFNSAAKSAKESLDIANAIRFGEGVVESVDTARIPDSNKRWRGRTAD
>NZ_CP030172.1|WP_043906731.1|3843531_3843789_-|DNA-polymerase-III-subunit-theta
MSKYNIAAKSQEERDKVNVDLAASGVAYKERLNMPVVAEVVAREQPEHLREYFMERVRYYREQSIQLPRASDPRYLEMASQNEKK
>NZ_CP030172.1|WP_059065858.1|3842885_3843341_-|hypothetical-protein
MNIPQCGIKLHSGNFNAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP030172.1|WP_074160387.1|3842715_3842886_-|hypothetical-protein
MSSLLAKVMDRGIFRVPARRKRKIEVKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP030172.1|WP_063417011.1|3842087_3842723_-|NinG-family-protein
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKALAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP030172.1|WP_023283343.1|3841950_3842091_-|YlcG-family-protein
MNHDVIERIRDRWQKLRLCRHRGTVLVDYRILRNFVRIYQTLGETA
>NZ_CP030172.1|WP_004194002.1|3847990_3848137_-|hypothetical-protein
MPKSNRFYQAQTHKNVTRDRFVRSVNPVVAEKMRAILEELKRKEEGRE
>NZ_CP030172.1|WP_004141720.1|3848223_3848544_-|hypothetical-protein
MENAIARKLEPPILNPIEIEGILLNRLLSIGQKVFAEMRGVSESTISRRKSEGYYAEMAKEISALGLQVVPPEAVVVSRHYLQSVETLADIGLRAERCRPGPLGWD
>NZ_CP030172.1|WP_004178811.1|3848583_3848817_-|helix-turn-helix-domain-containing-protein
MNPTIKTAINIVGSQKKLGEACDVSQQAVYKWLHNKAKVSPEHVNSIVNATNGEVQAHQIRPDLPKLFPSPKGVPAA
>NZ_CP030172.1|WP_024622727.1|3848921_3849611_+|helix-turn-helix-transcriptional-regulator
MKTTLAERLREARKAASMTQKTLGDAVGVSQAAIQKIETGRAAQTTKLLDIAKALRVRPEWLSSGTGAMRADGEDDKKPSHINHDVFRVDILDLAVSAGPGIVNQEFVEILHSVEYAPAEARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDISVKSFDGDGIYAFLYDDTAHVKRLQKMKDKLLVISDNKSYAAWDPIEKDEMNRVFVFGKVIGSMPQTYRKHG
>NZ_CP030172.1|WP_063417005.1|3849911_3850661_+|hypothetical-protein
MELQKNNDGTIPHVIEIIRRINEGSTQPFLCKCDDGKLYVLKSKPSMPPKNLVAEFVAGCLASDIGLPIPDFKVVFVPEELIEYAPELKREISTGHAFASQYIDGAVALTFIQSRNEAIIPIEQQKLIYVFDKWVLNADRTLTDKGGNVNIIYDVGNDKYYLIDHNLSFDQNAEPDDFLVHVYGPGNRKWQYDLIDRVEYRQKVVDSLCKVPEIFGDVPDDWVVDDDFLPFVNGTLEKGDRDEFWSAIA
>NZ_CP030172.1|WP_032420807.1|3850657_3851485_+|DUF3037-domain-containing-protein
MTTPCLYSIVRYAPYAETEEFANIGVVMCAPKENFFDFQITKRNDSRVRSFFHDDCIFPVAKDTIQRELQFAKAQASQIVGHQQLAQFFRYFTSKKESIFQFSSTRVVLSADPKEELEHIYNRYVNHSDYTKERREDVLAREIKRSIDRIDGLKNAFKPESIDGFYAKFTMPLVAKKQNIIQCAIKPLAFTQSEPGKMMEHSDTWVMRITRAAEENLLATEDILFTLEVPDSPSSGQRKVIDTIKRTMDAKKINHTSADNHNETINFAKKILAHP
>NZ_CP030172.1|WP_019725100.1|3851540_3851744_-|hypothetical-protein
MSNEDEFFAEMHPQIAQVIGIAVMQLLVEKREPSREALIEMIQVLWQGDQVDLAVELALDVLMLREE
>NZ_CP030172.1|WP_004219883.1|3852053_3852179_+|hypothetical-protein
MLGWQMSKQGIRSLIYCLLICGVIWTALIIKILHVTGVFNG
>NZ_CP030172.1|WP_008807814.1|3852171_3852378_+|phage-encoded-cell-division-inhibitor-protein
MVSHHYGTQTVNRGAVLPGMLVKHRESTWTASANKRGRLYLHRGIERTYTTDLLVEVYLNGLGQGLSR
>NZ_CP030172.1|WP_063417004.1|3852457_3853426_+|hypothetical-protein
MSEIMDLTVIEIKPEQAPTLYRAGGLDAYLEQIRQAVNEVPDLTTKKGRDRVASLAAQVSRSKTAIEKPGREYLKRLKEAVRPAEAEIKRFVDACDELRDATRKPLTEWEAEQERIKAEEAMNALHAEALAMNEEFDRQLAARIESDHEMALLMNDAFDREQADKAAEAERQRIAHEEEIKRLAAAAAAREVEQRAQREREEAAHREAVLKAQAEQAERDRIAAEQKAEADKQAAIEAERRKAQEEADRIRREAEQREQARLAEEKRKAEEESRRAADVEHRRGINTAAVQALIDHGIPYEWAKACIIAVALGKVPATTIKY

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Crispr_ID: NZ_CP030172_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030172_2

4333390-4333484

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030172_2

>merge|NZ_CP030172|2|4333390-4333484|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP030172|2|2|4333390-4333484|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030172.1\|WP_021441192.1\|4322529_4324032_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP030172.1\|WP_002888321.1\|4342929_4343778_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP030172.1\|WP_002888320.1\|4344030_4344510_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP030172.1\|WP_032428530.1\|4327576_4330483_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP030172.1\|WP_023279864.1\|4320809_4322519_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP030172.1\|WP_021441189.1\|4331217_4331757_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP030172.1\|WP_002888329.1\|4339445_4340732_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP030172.1\|WP_032103829.1\|4337042_4339391_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP030172.1\|WP_002888353.1\|4324169_4324865_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP030172.1\|WP_002888323.1\|4342547_4342925_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP030172.1\|WP_002888345.1\|4331936_4333301_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP030172.1\|WP_002888327.1\|4340737_4341727_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP030172.1\|WP_004192048.1\|4333625_4335251_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP030172.1\|WP_004219851.1\|4320457_4320628_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030172.1\|WP_002888332.1\|4335971_4336799_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP030172.1\|WP_004145972.1\|4319626_4320472_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP030172.1\|WP_021441191.1\|4325031_4327389_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP030172.1\|WP_101307703.1\|4330495_4331155_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP030172.1\|WP_002888324.1\|4341723_4342545_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP030172.1\|WP_002888337.1\|4335240_4335939_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931

Protein	Function_ID	Function_description	E-value
NZ_CP030172.1\|WP_021441192.1\|4322529_4324032_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP030172.1\|WP_002888321.1\|4342929_4343778_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP030172.1\|WP_002888320.1\|4344030_4344510_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP030172.1\|WP_032428530.1\|4327576_4330483_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP030172.1\|WP_023279864.1\|4320809_4322519_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP030172.1\|WP_021441189.1\|4331217_4331757_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	6.20047e-83
NZ_CP030172.1\|WP_002888329.1\|4339445_4340732_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP030172.1\|WP_032103829.1\|4337042_4339391_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP030172.1\|WP_002888353.1\|4324169_4324865_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP030172.1\|WP_002888323.1\|4342547_4342925_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP030172.1\|WP_002888345.1\|4331936_4333301_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP030172.1\|WP_002888327.1\|4340737_4341727_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP030172.1\|WP_004192048.1\|4333625_4335251_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	7.63459e-173
NZ_CP030172.1\|WP_002888332.1\|4335971_4336799_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP030172.1\|WP_004145972.1\|4319626_4320472_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP030172.1\|WP_021441191.1\|4325031_4327389_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP030172.1\|WP_101307703.1\|4330495_4331155_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.28264e-160
NZ_CP030172.1\|WP_002888324.1\|4341723_4342545_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP030172.1\|WP_002888337.1\|4335240_4335939_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66

>NZ_CP030172.1|WP_002888345.1|4331936_4333301_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP030172.1|WP_021441189.1|4331217_4331757_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQAGLISRQAQGEAMRRCLLCDEPAHACARSRRHDTGLVVARVEQMIDAWFARD
>NZ_CP030172.1|WP_101307703.1|4330495_4331155_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTIIHPAYGNAMTFRAPIDF
>NZ_CP030172.1|WP_032428530.1|4327576_4330483_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESKRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP030172.1|WP_021441191.1|4325031_4327389_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWSQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRTQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP030172.1|WP_002888353.1|4324169_4324865_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP030172.1|WP_021441192.1|4322529_4324032_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISNGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP030172.1|WP_023279864.1|4320809_4322519_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP030172.1|WP_004219851.1|4320457_4320628_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP030172.1|WP_004145972.1|4319626_4320472_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP030172.1|WP_004192048.1|4333625_4335251_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP030172.1|WP_002888337.1|4335240_4335939_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP030172.1|WP_002888332.1|4335971_4336799_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP030172.1|WP_032103829.1|4337042_4339391_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSNTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP030172.1|WP_002888329.1|4339445_4340732_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP030172.1|WP_002888327.1|4340737_4341727_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP030172.1|WP_002888324.1|4341723_4342545_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP030172.1|WP_002888323.1|4342547_4342925_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP030172.1|WP_002888321.1|4342929_4343778_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP030172.1|WP_002888320.1|4344030_4344510_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP030172_1	1.1\|3847539\|36\|NZ_CP030172\|CRISPRCasFinder	3847539-3847574	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP030172_1	1.1\|3847539\|36\|NZ_CP030172\|CRISPRCasFinder	3847539-3847574	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP030172_1	1.1\|3847539\|36\|NZ_CP030172\|CRISPRCasFinder	3847539-3847574	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 1.1|3847539|36|NZ_CP030172|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|3847539|36|NZ_CP030172|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|3847539|36|NZ_CP030172|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1617577 : 1624482

Planktothrix_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|1617577_1618441_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|1618451_1619225_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|1619465_1620362_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1620604_1621966_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1622284_1623007_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|1623003_1624482_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_2

2634026 : 2643441

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160333886.1\|2634026_2635661_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8
WP_004176258.1\|2635715_2636981_+	MFS transporter	NA	NA	NA	NA
WP_021440085.1\|2637011_2638100_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	5.2e-210	99.7
WP_004176262.1\|2638186_2638447_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_021440083.1\|2638738_2639605_+	class A beta-lactamase SHV-187	A0A077SL40	Escherichia_phage	1.7e-155	99.6
WP_002210513.1\|2639625_2640387_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|2640648_2641551_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_063417090.1\|2641562_2642828_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.0e-233	99.5
WP_002210516.1\|2642820_2643441_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_3

3321530 : 3330993

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004224003.1\|3321530_3323252_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|3323278_3323998_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3324351_3324570_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3324689_3326969_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3326999_3327317_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3327642_3327864_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_032429904.1\|3327940_3329881_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.9e-38	41.4
WP_002896440.1\|3329877_3330993_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_4

3811916 : 3860353

Cronobacter_phage(23.4%)

coat,lysis,tRNA,integrase,head

attL 3810044:3810060|attR 3867568:3867584

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3810044:3810060	attL	NA	NA	NA	NA
WP_130951467.1\|3811916_3812744_-	hypothetical protein	A0A0S1S106	Klebsiella_phage	4.5e-73	51.6
WP_063417025.1\|3815582_3818060_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.8e-197	45.2
WP_048265765.1\|3818046_3818442_-	hypothetical protein	F1C5F2	Cronobacter_phage	2.1e-36	55.6
WP_049185966.1\|3818438_3818909_-	hypothetical protein	R9TPR6	Aeromonas_phage	9.6e-28	40.4
WP_063417024.1\|3818908_3819385_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	2.3e-37	49.0
WP_029602700.1\|3819430_3819673_-	hypothetical protein	NA	NA	NA	NA
WP_063417023.1\|3819672_3823113_-	tape measure protein	Q5G8W8	Enterobacteria_phage	2.2e-153	46.8
WP_029884072.1\|3823207_3823711_-	hypothetical protein	NA	NA	NA	NA
WP_074160392.1\|3823813_3824041_-	hypothetical protein	NA	NA	NA	NA
WP_086556004.1\|3824135_3824453_+	hypothetical protein	NA	NA	NA	NA
WP_023328739.1\|3824504_3824825_-	hypothetical protein	NA	NA	NA	NA
WP_087662079.1\|3825430_3825781_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	7.1e-12	43.8
WP_061353713.1\|3825824_3826277_-	hypothetical protein	NA	NA	NA	NA
WP_016528886.1\|3826273_3826846_-	SocA family protein	NA	NA	NA	NA
WP_063417021.1\|3827156_3827840_-	hypothetical protein	G0ZNE7	Cronobacter_phage	9.8e-74	58.8
WP_048294321.1\|3827892_3828645_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	1.7e-42	41.8
WP_004151264.1\|3828713_3829106_-	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151265.1\|3829102_3829528_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_023301678.1\|3829530_3829893_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	3.3e-20	49.2
WP_032752624.1\|3829892_3830066_-	hypothetical protein	I6R0P9	Salmonella_phage	5.4e-13	54.4
WP_063417020.1\|3830065_3830446_-	hypothetical protein	F1C5E2	Cronobacter_phage	2.4e-29	55.3
WP_029884066.1\|3830448_3830688_-	hypothetical protein	NA	NA	NA	NA
WP_040027496.1\|3830720_3831776_-\|coat	phage coat protein	A0A291AXD4	Shigella_phage	2.2e-101	53.2
WP_016529582.1\|3831772_3832234_-	hypothetical protein	B1GS72	Salmonella_phage	5.0e-29	50.3
WP_063417019.1\|3832233_3833589_-	hypothetical protein	F1C5D9	Cronobacter_phage	9.5e-129	52.6
WP_063417018.1\|3833940_3834948_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	5.6e-118	71.4
WP_063417017.1\|3834874_3836344_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.4e-149	56.3
WP_063417016.1\|3836356_3837829_-	hypothetical protein	A0A1W6JNY3	Morganella_phage	6.9e-250	82.9
WP_063417015.1\|3837828_3838431_-	hypothetical protein	G8C7P2	Escherichia_phage	9.3e-76	80.3
WP_004178838.1\|3838801_3839131_+	hypothetical protein	NA	NA	NA	NA
WP_063417014.1\|3839236_3839701_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.8e-55	74.5
WP_063417013.1\|3839697_3840201_-	lysozyme	M1FJA0	Enterobacteria_phage	6.1e-73	79.6
WP_063417012.1\|3840203_3840518_-	hypothetical protein	H6WRZ3	Salmonella_phage	2.4e-43	85.1
WP_063417047.1\|3841261_3841951_-	antiterminator	I6PDF8	Cronobacter_phage	1.2e-55	53.6
WP_023283343.1\|3841950_3842091_-	YlcG family protein	NA	NA	NA	NA
WP_063417011.1\|3842087_3842723_-	NinG family protein	M9NYX8	Enterobacteria_phage	1.7e-80	77.5
WP_074160387.1\|3842715_3842886_-	hypothetical protein	G8C7V4	Escherichia_phage	5.7e-15	73.2
WP_059065858.1\|3842885_3843341_-	hypothetical protein	K7P7B8	Enterobacteria_phage	1.0e-55	69.5
WP_043906731.1\|3843531_3843789_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.4e-26	76.6
WP_032428632.1\|3843788_3844076_-	hypothetical protein	NA	NA	NA	NA
WP_063417010.1\|3844248_3844836_-	ead/Ea22-like family protein	A0A075B8K3	Enterobacteria_phage	2.0e-30	48.0
WP_063417009.1\|3844942_3845389_-	hypothetical protein	R9TME7	Aeromonas_phage	2.9e-10	36.5
WP_063417008.1\|3845385_3845679_-	hypothetical protein	M1FPD5	Enterobacteria_phage	1.2e-25	64.5
WP_074160390.1\|3845678_3847094_-	AAA family ATPase	Q9MCT4	Escherichia_phage	2.4e-183	67.1
WP_074160391.1\|3847098_3847950_-	DNA replication protein	F1C5C3	Cronobacter_phage	3.4e-84	55.6
WP_004194002.1\|3847990_3848137_-	hypothetical protein	NA	NA	NA	NA
WP_004141720.1\|3848223_3848544_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	3.8e-36	68.9
WP_004178811.1\|3848583_3848817_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
WP_024622727.1\|3848921_3849611_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.0e-86	70.6
WP_063417005.1\|3849911_3850661_+	hypothetical protein	NA	NA	NA	NA
WP_032420807.1\|3850657_3851485_+	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_019725100.1\|3851540_3851744_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.2e-19	73.1
WP_004219883.1\|3852053_3852179_+	hypothetical protein	NA	NA	NA	NA
WP_008807814.1\|3852171_3852378_+	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_063417004.1\|3852457_3853426_+	hypothetical protein	M9P0E1	Enterobacteria_phage	1.8e-65	91.0
WP_063417003.1\|3853433_3853631_+	hypothetical protein	NA	NA	NA	NA
WP_157829419.1\|3853627_3853786_+	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	1.3e-05	60.5
WP_009483856.1\|3853782_3854436_+	single-stranded DNA-binding protein	A0A1W6JP21	Morganella_phage	4.0e-64	62.3
WP_063417002.1\|3854419_3854710_+	hypothetical protein	NA	NA	NA	NA
WP_063417001.1\|3854706_3855012_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_063417000.1\|3855008_3855662_+	DNA methyltransferase	G8C7S6	Escherichia_phage	3.9e-112	87.5
WP_063416999.1\|3855658_3855877_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.6e-06	51.0
WP_071844011.1\|3856034_3856370_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_039108810.1\|3856246_3857410_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	6.6e-203	86.8
WP_004143017.1\|3857841_3858708_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004143016.1\|3858709_3858922_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|3858967_3860353_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
3867568:3867584	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP030172

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection