CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP030349	Enterobacter hormaechei strain AR_038 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0
NZ_CP030347	Enterobacter hormaechei strain AR_038 chromosome, complete genome	3 crisprs	csa3,DEDDh,cas3,WYL,DinG	2	13
NZ_CP030346	Enterobacter hormaechei strain AR_038 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP030350	Enterobacter hormaechei strain AR_038 plasmid unnamed5, complete sequence	0 crisprs	NA	0	1
NZ_CP030348	Enterobacter hormaechei strain AR_038 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
NZ_CP030345	Enterobacter hormaechei strain AR_038 plasmid unnamed1	0 crisprs	RT	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

54093 : 61115

Escherichia_phage(33.33%)

integrase

attL 49607:49620|attR 70390:70403

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
49607:49620	attL	NA	NA	NA	NA
WP_022650030.1\|54093_54786_-	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	5.7e-29	36.7
WP_022650031.1\|55182_55650_-	hypothetical protein	NA	NA	NA	NA
WP_080332517.1\|55627_55885_-	DUF1472 domain-containing protein	NA	NA	NA	NA
WP_022650032.1\|56015_56444_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.3e-28	51.6
WP_022650033.1\|56443_57715_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.9e-156	63.7
WP_022650034.1\|57718_58108_-	hypothetical protein	NA	NA	NA	NA
WP_022650035.1\|58112_59084_-	hypothetical protein	A0A222YXF2	Escherichia_phage	2.2e-66	42.9
WP_022650036.1\|59320_59959_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	5.8e-44	44.9
WP_022650037.1\|59958_60237_+	hypothetical protein	NA	NA	NA	NA
WP_022650038.1\|60335_61115_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.5e-51	89.3
70390:70403	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP030347

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP030347_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030347_1

3048220-3048381

Orphan

Consensus_repeat	Method
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030347_1

>merge|NZ_CP030347|1|3048220-3048381|CRISPRCasFinder
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGAGAAACGATAAAAAGCCGGGTGGCGGCTACGCCTTACCCGGCCTACATGTTCTACATATTCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAGCCGGA

>NZ_CP030347|1|1|3048220-3048381|CRISPRCasFinder
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGA	GAAACGATAAAAAGCCGGGTGGCGGCTACGCCTTACCCGGCCTACATGTTCTACATAT
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAGCCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030347.1\|WP_032619709.1\|3041387_3042827_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|182233
NZ_CP030347.1\|WP_003857305.1\|3058073_3058532_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP030347.1\|WP_032619713.1\|3059540_3060761_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NZ_CP030347.1\|WP_032619707.1\|3039660_3040728_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP030347.1\|WP_015570569.1\|3038903_3039647_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP030347.1\|WP_017693463.1\|3053174_3053861_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP030347.1\|WP_023303699.1\|3043025_3043820_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|224351
NZ_CP030347.1\|WP_017384500.1\|3053868_3054408_-\|DUF2058-domain-containing-protein	unknown	unknown	gnl\|CDD\|225664
NZ_CP030347.1\|WP_023303692.1\|3058528_3059062_-\|DUF3833-domain-containing-protein	unknown	unknown	gnl\|CDD\|378992
NZ_CP030347.1\|WP_023303693.1\|3056603_3057536_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP030347.1\|WP_003857302.1\|3055571_3056600_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|181659
NZ_CP030347.1\|WP_023303698.1\|3044034_3045687_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP030347.1\|WP_032619706.1\|3036834_3038172_-\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP030347.1\|WP_023303697.1\|3046788_3048168_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP030347.1\|WP_003857304.1\|3057634_3058069_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP030347.1\|WP_017384015.1\|3016345_3018511_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NZ_CP030347.1\|WP_015570570.1\|3040769_3041300_-\|cytochrome-b561	unknown	unknown	gnl\|CDD\|236921
NZ_CP030347.1\|WP_023296571.1\|3054576_3055551_+\|DUF1852-domain-containing-protein	unknown	unknown	gnl\|CDD\|370181
NZ_CP030347.1\|WP_017693458.1\|3045709_3046792_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP030347.1\|WP_015570577.1\|3052478_3053084_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234675

Protein	Function_ID	Function_description	E-value
NZ_CP030347.1\|WP_032619709.1\|3041387_3042827_-\|aldehyde-dehydrogenase	gnl\|CDD\|182233	PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.	0
NZ_CP030347.1\|WP_003857305.1\|3058073_3058532_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	5.29058e-30
NZ_CP030347.1\|WP_032619713.1\|3059540_3060761_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	3.2042e-110
NZ_CP030347.1\|WP_032619707.1\|3039660_3040728_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	9.00543e-148
NZ_CP030347.1\|WP_015570569.1\|3038903_3039647_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.67687e-73
NZ_CP030347.1\|WP_017693463.1\|3053174_3053861_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	5.32781e-69
NZ_CP030347.1\|WP_023303699.1\|3043025_3043820_-\|YdcF-family-protein	gnl\|CDD\|224351	COG1434, COG1434, Uncharacterized conserved protein [Function unknown].	5.30194e-19
NZ_CP030347.1\|WP_017384500.1\|3053868_3054408_-\|DUF2058-domain-containing-protein	gnl\|CDD\|225664	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown].	1.03752e-76
NZ_CP030347.1\|WP_023303692.1\|3058528_3059062_-\|DUF3833-domain-containing-protein	gnl\|CDD\|378992	pfam12915, DUF3833, Protein of unknown function (DUF3833). This is a family of uncharacterized proteins found in Proteobacteria.	3.41715e-91
NZ_CP030347.1\|WP_023303693.1\|3056603_3057536_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.17838e-73
NZ_CP030347.1\|WP_003857302.1\|3055571_3056600_+\|methionine-synthase	gnl\|CDD\|181659	PRK09121, PRK09121, methionine synthase.	0
NZ_CP030347.1\|WP_023303698.1\|3044034_3045687_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.85977e-23
NZ_CP030347.1\|WP_032619706.1\|3036834_3038172_-\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	4.16719e-87
NZ_CP030347.1\|WP_023303697.1\|3046788_3048168_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	6.43453e-93
NZ_CP030347.1\|WP_003857304.1\|3057634_3058069_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	2.22711e-23
NZ_CP030347.1\|WP_017384015.1\|3016345_3018511_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP030347.1\|WP_015570570.1\|3040769_3041300_-\|cytochrome-b561	gnl\|CDD\|236921	PRK11513, PRK11513, cytochrome b561; Provisional.	3.34238e-118
NZ_CP030347.1\|WP_023296571.1\|3054576_3055551_+\|DUF1852-domain-containing-protein	gnl\|CDD\|370181	pfam08908, DUF1852, Domain of unknown function (DUF1852). This family of proteins are functionally uncharacterized.	0
NZ_CP030347.1\|WP_017693458.1\|3045709_3046792_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.21598e-94
NZ_CP030347.1\|WP_015570577.1\|3052478_3053084_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	1.54157e-130

>NZ_CP030347.1|WP_023303697.1|3046788_3048168_+|efflux-transporter-outer-membrane-subunit
MTLRPIAGLLIMAFLAGCQSVDVEPAKSSLHIPAQWRATSGPASPTEQLWWRNFHDSNLNRYVDQALKNNSDVLIARERINEYQARVYAADGSLFPSLDAGVTGTRARSQSAATGLPVYGTLYKGSLTASYDVDIWGVNRSTSRAAEASLEAQKAAAAAADLTVASSVASGYVTLLSLDEQLRVTRSTLKSREEAFNLAKRQFETGYSSRLELMQSDSELRATRAQVPLLQHQIAQQENALSLLLGSNPGDVARGESFDALTPLKLPSQLPSTLLNRRPDIVQAERQLIAADATLAASRASLLPSINLTATGSVQDRTLSGLLDNPLQLWSVGGSILAPLLNRQALNAQVDISQSQRNQALYSYEKTVRNAFAEVNDSLDAITRYQEQLTELLAQQTVAQETLRIAQNRYRNGYSSYLDELDAQRTLFSVQTSVVQVKNNLLLAQIDLYKALGGGWSSA
>NZ_CP030347.1|WP_017693458.1|3045709_3046792_+|HlyD-family-secretion-protein
MSQQDAAKEQANTRKNVRVVSIFTAAAIGIVGVLVILYAWQLPPFTRHAQFTDNAYVRGQTTFISPQVNGYITEVHVQDFAQVKKGELLLQIDDRIYRQRVHQAEAQLAMKIAALNNNLQQRKSAEAVIAKNEAALKNARAQSLKTQADLKRVKELTADGSLSIRERDSALASAAQGSADIDQAKATLEMSRQDLQTVIVNRGSLEADVENAKAALELAQIDLQNTRIVAPRDGQLGQIAVRLGAYVTAGTHLTTLVPPQHWVIANIKETQLANLRVGQPVKFTVDALNDKAYQGRVESISPATGVEFSAITPDNATGNFVKIAQRIPVRIEVLGEPEAYRLLRPGMSVQVTIDTREAKQ
>NZ_CP030347.1|WP_023303698.1|3044034_3045687_+|MFS-transporter
MRLPQRDPYAPREWQPHEKPALLGSPSTPEHPTSKRIAYGVVGLLVCLTGALGNAVVTANLQNLQGTFGAWSTEIAWLPAVYVMTNVSINLLLVKFRQQYGLRAFTEGFLVLYVLVTFFHLFVNDLSSALMVRAAHGMVAAALSSLGIYYQIQAWPAKHRLKALTIGITGSSLAIPLARLFSTELLQLDEWRGLYFFELGLALISLACVMALKLPPGDRRKVFEKKDFITFFLLAPGMALLCAVLSLGRLDWWFEAPWIGWALALSLVLIVSAIVFEHNRNNPLLNTRWLSSGSIVRLGLIMLLIRIVLAEQNTGVIGWLQYVGLQNEQMTHLAWAIFAGIVCGIVTSCLTIKPTKLAWPIITSLALMIVASLLDSQSNNLTRPDQLIFSQFLLGFGSAFFLAPAMLAAIGGVIADPRNLVSFSVMFGMSQNLGGLLGSAILGTFQTWREKYHSSLLADQLTTLNPLVNERIQLYTQMYKSLIGDSSLLGTQAITQLQTVTALEANILAYNDTYLLTASIATATLVWILWRLLRLRITARMALKNATGNK
>NZ_CP030347.1|WP_023303699.1|3043025_3043820_-|YdcF-family-protein
MTMALFPCLPGTTLDAVNTVGAWLAQDDYQDNQPVDLVILAGNAVIPAIDAACKIAAEQGIPLIISGGIGHSTTFLYAAIAKHPRYNRIPTTGRAEAAILADIAREFWNIPAEHLHVEDQSTNCGENARFSRALMKQSGLNAARVLVVQDPTMQRRTMATFARVCRDEAASPAWVSHPGLTPVLQNSDDGLVFSGPVEGLWPVERYLSLVLGEFPRLRDDINGYGPAGRDFIAHVDIPADVDAAWQILRNDVILTDALVSRSLL
>NZ_CP030347.1|WP_032619709.1|3041387_3042827_-|aldehyde-dehydrogenase
MTVPVQHPMYIDGQFVAWQGDAWIDVINPATEEVISRIPDGSAEDTRKAIDAADRAQAGWEALPAIERASWLRKISAGIRERVSEISALIVAEGGKIQQLAEVEVNFTADYIDYMAEWARRYEGEIIQSDRPGENILVFKRALGVTTGILPWNFPFFLIARKLAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVGAGEKIMAAAAKNITKVGLELGGKAPAIVMDDADLELAVKSIVDSRVINTGQVCNCAERVYVQKGIYDRFVNRLGEAMKAVQFGNPAERTDIAMGPLINAAALERVEQKVARAVQEGAKVVLGGKAAEGKGYFYPPTLLLDVRQDMAIMHEETFGPVLPVVAFDTLEEALNMANDSDYGLTSSVYTQDLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLNEYLQTQVVYLQS
>NZ_CP030347.1|WP_015570570.1|3040769_3041300_-|cytochrome-b561
MRTKYTGLQISIHWLVFLLVIMAYCAMEFRGWFPRTDRPLINMIHVSCGISILVLMVARLLIRLKFPAPPIQPKPKAMITGLSHLGHLVIYLLFIALPLIGMVMMYNRGNDWFAFGLTMPHAAEGNFDLVDTLKEWHVTLANLGYFVIGLHAFAALMHHYFWKDNTLLRMMPKKRQ
>NZ_CP030347.1|WP_032619707.1|3039660_3040728_+|oxidoreductase
MNKVKTMNIALIGYGFVGKTFHAPLIQSVEGLKLAVVSSRDEEKVKRDLPDVLVVATPEEAIQHPDIDLVVIASPNATHAPLATLALNAGKHVVVDKPFTLDMQEARDLIALAQEKQRLLSVFHNRRWDSDFLGIKQVIEQGRIGKVKHFESHIDRFRPEVRVRWREQNVPGSGLWFDLGPHMIDQTLQLFGLPQSVQGNIATLRDGAEINDWAHVVLNYPEHKVVLHCSMLVAGGVARFTVHGDKASVVKAHIDQQEAQLLAGVVPGSESWGEDSDAMVLFNAQGEASAIPAPKGDQRQYYINVRDALNGKIDNPVHPVEALAVMAVLEAAVKSSETGSTLELDLTAQERAQLQ
>NZ_CP030347.1|WP_015570569.1|3038903_3039647_+|DeoR/GlpR-transcriptional-regulator
MHKTARQKYVLDIITEQGQASITELAERLQVSADTIRRDLTDLEKQGLAQKNHGGAIALNLSTMTRVSRNSLLPEIKQRLGKQVAQCVPAGSTLFLDAGSTLLAVASFLQGPLTIITPSLDIAQQVSDREDIDLILLGGKWDQKQRLFAGSATLSLLSRYRADIAILGACAIHAELGLSASQEADAEVKRAMLAASQAHWVVADHLKLNQCEPYLVSGLSEIHQLFLDRPWAELGDHSALQVTVGAH
>NZ_CP030347.1|WP_032619706.1|3036834_3038172_-|TolC-family-outer-membrane-protein
MKMKCNNRLLRLSVSLTLISLVVTAANANNGQTGISPVAAMTMKESILFALDRDPSVSQQAAQLGIGQAQIDEARSGWMPQIALNGSTGHSQTTDSSGSLRNSAAWGLSLTQLVYDFGKTNNSISQSSAQRDSYRYQLMSTMSAVAEKTALSYVEVKRYSDLLQAAKENVQALKNVEQLAKLRADAGVSSTSDELQTRTRIAGMQATVEQYNASLNSARARLAVLTGIQAERYSPVPGGLAVEPDSLNRIDYSLIPTVMAAQNMERSAQYGVETARSQHWPTLSLKGGRTRYESDNRAYWDDQIQLNIDAPLYQGGAVSARVRQAEGARAMASSQVDQARFDVLQKASVAQADWTGARGRMEAGKRQLENALRARDVYKNEYTLSKRSINDLLSVEQDVWSATSAKIMAEYDGWSAAINYASAVDNLLPLIGIEKNAAAKLPDLS
>NZ_CP030347.1|WP_017384015.1|3016345_3018511_-|type-I-secretion-system-permease/ATPase
MKTHPQYEPWLQGMLIIAKYYRLDFSAEHVRVTINHESQSPRQLVLEEMARQLGLGMRWVAAGAVALDPWRLPLLAEFTGGQIAVINRMDNEGNVSVQFSGDGGLETTLTRDELGSRLKGLMVLRPLESTPDARVDDYIKPYEKNWFWQLALKDWRRYSDIMLVALVANVLALSGMVFSMQVYDRVVPSQSEATLWVLFGGVMIAIVFEFIMRMLRVHISDVVGKRADLRISERVFAHALRIKNGARSKSTGSFIAQIRELESVRELITSTTIAAISDLPFFLLFVFILWMIGGPLVLVVLLAVPLLLIPGLLVQRPLGKLSSEGMRESAIRNATLVEAVQGLEDIKLMRAEQRFQNQWNNTNDVAASVGMKQRWLTGLLLTWTQEVQSIVYAVVLLVGCYLVISGDMTTGALVGTSILASRTIAPLSQISGVLSRWQSAKVARKGLDDLMQRPIDDPQHGKKVHKAHLRGDYRLDDVGFYYDEEEKLTVLNISKLRIRAGERVAVLGRNGSGKSTLLHLLAGMQEPQQGSILLDDIALNHLDPADVRRDMQLLSQQARLFFGSVRDNILMGNPLATDEEIHQALVNSGALEFVRKQKMGLNTIINEGGTGLSGGQRQALLLARALITSPNILLLDEPTAWLDEVSEKQFIQHLHQWLGKRRTLVVATHRLPILDLVDRIIVLENGKVVMDGPRDAILRQHGMAPQQAPQRTVKLKTEGVA
>NZ_CP030347.1|WP_015570577.1|3052478_3053084_+|FMN-dependent-NADH-azoreductase
MSKVLVLKSSILAGYSQSGQLSDYFVEQWREQHSADEITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELQAHDVIVINAPMYNFNIPTQLKNYFDLVARAGVTFRYTENGPEGLVKGKRAVVLTSRGGIHKDTPTDLVAPYLTLFLGFIGITDVNFVFAEGIAYGPEVATKAQTDAKAAIDSLVAA
>NZ_CP030347.1|WP_017693463.1|3053174_3053861_+|RluA-family-pseudouridine-synthase
MSVIIDTFIAPPCHDNIEILWQDEHLLLINKPSGLLSLSGKNPQNLDSVHHRLVQTFPGCTLVHRLDFGTSGLMVIARNKAINAALCHQFSQRAVNKVYTALLCGHVEQDEGTVDAPIAKDPALFPLMTICARTGKPARSRYRVVERIYQDTTMPLTRVELTPETGRTHQLRIHCQQLGHPILGCDLYGGLEWPGAEETPRLMLHASALNFIHPLSGETMNARHAAPF
>NZ_CP030347.1|WP_017384500.1|3053868_3054408_-|DUF2058-domain-containing-protein
MTKLTLQEQMLKAGLVSSKKMAKVQRTAKKSRVQAREAREAVEENKKAQLERDKQLSEQQKQAVLAKEFRAQVKQLIEMNRITVAKGNITFNFTDGNLIKKIEVDKQTQTQLINGRLAIARLVINANGDCDYAIIPAVVADKIAQRDADSIVLNSALSQEEQDEDDPYADFKIPDDLMW
>NZ_CP030347.1|WP_023296571.1|3054576_3055551_+|DUF1852-domain-containing-protein
MSQAFTFTLKRSCFDENYNPSENTRTTTNFANLARGEKRQENLRNTLVMINNRFNALASWDNPKADRYAVELEIISVDMNIGGDFTFPAIEILQTTIVDKKTHERIEGIVGNNFSSYVRDYDFSVLLLEHNKDRARFSLPENFGELHGNIFKSFVHSAEYQANFKKAPVICLSVSSKDTYRRTGNHHPVLGYEYQPDGESLTEQYFAKMGLKVRYFMPENSVAPFAFFFTGDLLRDYTNLELIGTISTMETFQKIYRPEIYNANSAAGQCYQPDLNQQDHSLTKIVYDREERSRLAIEQGKYTEERFIKPYKTLLEQWSQHFTL
>NZ_CP030347.1|WP_003857302.1|3055571_3056600_+|methionine-synthase
MKTLLPTSTAGSLPKPTWLAQPETLWSPWKLQDEELLAGKQDALRLSLDEQIRAGIDIVSDGEQTRQHFVTTFIEHLSGVDFENRQTVRIRNRYDASVPTVVDAVARQKPVFVDDAKYLRQLTDKPIKWALPGPMTMIDTLYDAHYKSREKLAWEFAKILNQEARELEAAGVDIIQFDEPAFNVFFDEVNDWGIAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQTSKIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVATQTIETPEEVADTLRKALQFVDADKLYPSTNCGMAPLSRQVANGKLKALSAGADIIRRELAR
>NZ_CP030347.1|WP_023303693.1|3056603_3057536_-|LysR-family-transcriptional-regulator
MMDAGHISIRALLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAIMPTESGHLFVRYARAMAGNMEDARRELDERAREPSGTLRINGPVFFGQRHIAPGLPGLLARYPRLSIELTLTDDFIDPHRDAADVIFRIGALTDSSFHARVFGQQFYHLAASPDYLQKHGAPEGPDDLSRHHCLVYRGSSGPNRWLIRQPGEAWVHYPIVPLMTSNNAETLLIAALGGMGVVLFPDWMVSERLKSGELVALLPEMECSINTEPLTIAAIYPNARHPPLNVRAVIDYYIERFGTPLYWQT
>NZ_CP030347.1|WP_003857304.1|3057634_3058069_+|DMT-family-transporter
MHIILILLVIAGGMGLSVEAGLLGPLGAEVGDLWAAFSIFSVGTGLTFLLMLFFSPRNSPSFFAQPSWHLLGGVLGPVYVIILTIATPAIGIAMTMIGILAGQVFKSLIIDHYGLLGTPHRRIDTKRIIALGFIIAALILVAQG
>NZ_CP030347.1|WP_003857305.1|3058073_3058532_+|DMT-family-transporter
MTVIMIILAVIGGATLSIQAAINGQLGSSVGVFKSAFLTFSVGALVTALLIFFFEPKQAVSLMDVPKWQLLGALCGVPYIVIMVLAVQRIGTAVATVAVILGQLAMSMLIDNFGWLNNEAIPFSVSRFGAVVCLSIALFFIYSSSKPQPEED
>NZ_CP030347.1|WP_023303692.1|3058528_3059062_-|DUF3833-domain-containing-protein
MKRFLLMALALTMLVAGCSTEVTEYRQQQPRLDIFTYFQGKTEAWGMVQDRSGKQIRRFHVEIAGDVIGDTLTLNEHFVYDDGEKQQRVWHIRRVGQNRYEGTAGDIEGGATGQAAGNALNWRYSMNVKADGKTWLLHFDDWMYLQDSTRLFNKTEMKKFGVTVATVTLFFTRKEGG
>NZ_CP030347.1|WP_032619713.1|3059540_3060761_-|class-I-SAM-dependent-methyltransferase
MTNPVFALEPDIPRNVRVARWLLFRLLNGLHGGSLTLREGAQTFQFGDASAALHAEVQVLAPGVYWRILTGGSLAAAQAWMDGDWETPHLTPLLELIARNSQILGKLEKGFRLLGKPVERLRHWMRRNSRAQARENIAAHYDLGNAFYAHFLDEHLLYSSALFSGDEQDLTAAQQAKMARLCDQLALTANDHLLEIGTGWGAMAEYAARHYGCRVTITTLSQEQYHWATARIARAGLQDRVEVLLCDYRDLSGVYDKLVSVEMIEAVGQRYLPTFFRTCQARLRPGGRMAIQAITIQDQRYRDYSKSVDFIQRYIFPGGFLPSITAMNELMTRHTDFVVRNLFDMGPDYARTLAHWRQRFVHAWQEIEKLGFDDRFRRMWLYYLGYCEAGFNARTISVVQLTAERV

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP030347_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030347_2

3402388-3402490

Orphan

Consensus_repeat	Method
GTCAGAATCTGACGGGTGAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030347_2

>merge|NZ_CP030347|2|3402388-3402490|CRISPRCasFinder
GCCAGATTCTGACGGGTGAAAACGTCATTTTTGTCAGAATCTGACGGGTGAAAACCGTTTGAACATCCAGAATCTGAAGGTTCAGATTTTGAAGGGTCAGAAT

>NZ_CP030347|2|2|3402388-3402490|CRISPRCasFinder
GCCAGATTCTGACGGGTGAAAAC	GTCATTTTTGTCAGAATCTGACGGGTGAAAACCGTTTGAACATCCAGAATCTGAAGG
TTCAGATTTTGAAGGGTCAGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030347.1\|WP_032635114.1\|3397302_3397764_-\|lysis-protein	unknown	unknown	gnl\|CDD\|281263
NZ_CP030347.1\|WP_001752682.1\|3398232_3398457_-\|lysis-S-family-protein	unknown	unknown	gnl\|CDD\|368216
NZ_CP030347.1\|WP_032619870.1\|3394205_3394556_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_CP030347.1\|WP_157843456.1\|3396587_3396989_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379158
NZ_CP030347.1\|WP_032619873.1\|3394555_3395146_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_032635111.1\|3399663_3401043_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273206
NZ_CP030347.1\|WP_032635104.1\|3405087_3405747_+\|AP2-domain-containing-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_032635105.1\|3404598_3405018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_032635103.1\|3406426_3406648_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_032635102.1\|3406644_3407052_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_032634767.1\|3397760_3398255_-\|lysozyme	unknown	unknown	gnl\|CDD\|381619
NZ_CP030347.1\|WP_032635107.1\|3403505_3404195_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|119397
NZ_CP030347.1\|WP_032635112.1\|3398853_3399636_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|367572
NZ_CP030347.1\|WP_032635115.1\|3395127_3396588_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NZ_CP030347.1\|WP_032635106.1\|3404385_3404598_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_032635108.1\|3402844_3403141_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_000795057.1\|3406067_3406430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_016240231.1\|3405883_3406087_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_032635110.1\|3401039_3401921_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181180
NZ_CP030347.1\|WP_001064664.1\|3403166_3403394_-\|transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP030347.1\|WP_032635114.1\|3397302_3397764_-\|lysis-protein	gnl\|CDD\|281263	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	7.14196e-47
NZ_CP030347.1\|WP_032634767.1\|3397760_3398255_-\|lysozyme	gnl\|CDD\|381619	cd16900, endolysin_R21-like, endolysin R21-like proteins. Unlike T4 E phage lysozyme, the endolysin R21 from Enterobacteria phage P21 has an N-terminal SAR (signal-arrest-release) domain that anchors the endolysin to the membrane in an inactive form, which act to prevent premature lysis of the infected bacterium. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	1.35036e-74
NZ_CP030347.1\|WP_001752682.1\|3398232_3398457_-\|lysis-S-family-protein	gnl\|CDD\|368216	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S. Phage_holin_2_1 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Members of this family fall into the holin superfamily II, and Phage 21 S holin is the prototype for this superfamily. It has two transmembrane segments with both the N- and C-termini on the cytoplasmic side of the inner membrane in E. coli. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the build up of a holin oligomer which causes the lysis.	6.91938e-26
NZ_CP030347.1\|WP_032619870.1\|3394205_3394556_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	2.27351e-12
NZ_CP030347.1\|WP_032635107.1\|3403505_3404195_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	9.3521e-18
NZ_CP030347.1\|WP_032635112.1\|3398853_3399636_-\|molecular-chaperone	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	7.79973e-28
NZ_CP030347.1\|WP_032635115.1\|3395127_3396588_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	1.17738e-11
NZ_CP030347.1\|WP_157843456.1\|3396587_3396989_-\|hypothetical-protein	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	7.73598e-08
NZ_CP030347.1\|WP_032635111.1\|3399663_3401043_-\|AAA-family-ATPase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	4.9015e-105
NZ_CP030347.1\|WP_032635110.1\|3401039_3401921_-\|ATP-binding-protein	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	2.29193e-35

>NZ_CP030347.1|WP_032635110.1|3401039_3401921_-|ATP-binding-protein
MLSIKQREEREALVAKREGLREELAFAVEHKKPWQWGSWESGDVHAADCEKHGNYQRISLTGKAYRGVENVKYSQCPECVKAELAGIESSLRTLRVADLIDNAGIARRFEACEFDNYQAINQDAAKNLAACQRYATSWPERLKAGTGLVMTGNCGTGKNHLAVSMAKSIIRDHLAKVEITDVMRLTRAVKSTWRHNAEMTEEDVIERFASLDLLIIDEVGVQFGSPTEMTILQEIINARYESILPTILISNLTFDQLKDTIGERIVDRVTDGGRNRLAFGWESFRAIAAGAKA
>NZ_CP030347.1|WP_032635111.1|3399663_3401043_-|AAA-family-ATPase
MTPVWKNEDLEGAVIGAIFLRGADPEVLDILSRVPASAFSVPQYREIYTGICRQSRGAGVIDPVLLCESMPQHSAIILESSRIAWAKSALVSYVSTLERNAAVRDAEAVIERALADLRSAHNGDAALSAFRAAQNSIAAITLEEKTVQPVHIDDILPAVVDRVDARNRGLEEARSLMTGIEELDAKTGGIEPTDLVFIAARPSMGKTELALDIIDKVSEQGRGVLFFSMEMPNIQIGERMVSAAGGMSVSRLKKAADFDDEDWARLTNGVERLTGRSIWMVDSTDLTVDQIQQIATRLQLAHPEIALVVVDYLALIKIESTARYDLAVGEVSKGLKRLAKSNKTPVLALSQLSRGVESRPNKRPMNSDLKNSGEIEADADLIMMLYRDEVYNPESPAKGIAEINVTKQRNGELGTIYRRFYNGHFLPIDQELAKQRSAPQQKAQTRRYSKERHSSNADY
>NZ_CP030347.1|WP_032635112.1|3398853_3399636_-|molecular-chaperone
MKLETSLKHFSPQGMHISDEVKGTSPERLTGTDVMAAIGTTSSRARFGLAAFFGKAGISKTDEQLAVQALARYAMDVAPKNVRKAAGGQFGWCMQMLAQFAFADYSRSAATSVTCHSCSGTGFISGNEDVVKHPGIFDDDGAEVVAPKIKNELVKRVCETCGGKKVILARCRCGGKGEVLDRKATKERGAPVFKTCERCSGNGFSAISSATVHRAILKRLPDLHQSSWSRNWKPFYEMLVDSLRQGERQAAVEFEKATTY
>NZ_CP030347.1|WP_001752682.1|3398232_3398457_-|lysis-S-family-protein
MYRMEKITTGAAYGASAGSILNGMLNAYSPEQWNAIGVLVGIIIAVLTYLTNLYFKIREDNRRSRSRDEPDTQE
>NZ_CP030347.1|WP_032634767.1|3397760_3398255_-|lysozyme
MNPTLRNKLVGAIVGGSGAITIAAVMLGNADGLEGRRYYAYQDVVGVWTVCDGHTGSDIRRGHRYTDKECDTLLKADLRKVANAIDPLIKVRIPEPTRAALYSFTYNVGSGAFASSTLLKKLNAGDVPGACKELQRWTYAGGKQWKGLITRREIEREVCEWGQK
>NZ_CP030347.1|WP_032635114.1|3397302_3397764_-|lysis-protein
MSRLTAIICAVVICLLVSMSWAINHYRNNAITYKDQRDKATEKLSMANATITDMQTRQRDVAALDAKYTGELADAKETIERLHSDVIAGRKRLQLNANCPANGATGTGSLGDATSPRLTDSAERDYFTLRERIVTVTKQVGYLQDYIKDQCLK
>NZ_CP030347.1|WP_157843456.1|3396587_3396989_-|hypothetical-protein
MVDDSTGCWNWLAYINPDGYGMFKHKGVMTLAHKASYELLVKNVPDGFELDHACHNRKCVNPKHLRVVTHTVNIWNRIKPVSSTGVMGVSIRESGKYRARLTRNGDIIFQKEFETLSEATAAVEKARYEFEGK
>NZ_CP030347.1|WP_032635115.1|3395127_3396588_-|glycosyltransferase-family-2-protein
MDVIVDGVPYVRADSVSHNKIGIAITTHNRPQVLANSLEQHRKHLPPGAVVFVIDDGSNPPAKVPEWCNLIRHDKSRGIVASKNSSLECLMDSGCEHLFLWDDDAYAIADNWHLPYIESPEPHLAYQFLDLAGCNKLNDLSVLYRDDQHVAYTGQRGVMLYYHRSAIEKVGGFDPVYGRGMYEHSDLALRIHNAGLTTWAYADVLGSDKLIHSLDEHEAVERSVPRPDRRALVERNVKIHNERRDTGFTGYVEYRRQRDVVITTLLTSQPDPQRGTKMTAAPDMLTRWATSLRNCGRIALVDELQTAPADVELYRVPDVKMNVYFRRWLHIWQHLRDHPEYRFVWCTDGTDVEMLRAPWEEMEPGKVYVGSEPKTYADTWAKQNHPERIYQEFIEAHRGDVMLNAGLLGGTRADVMAFAHGIIRLYYRIESYRFWKKEQAGAAVGDMLAFGIVAQSFADRLVTGPLVHTVFKTDGIGKEAAWWKHK
>NZ_CP030347.1|WP_032619873.1|3394555_3395146_-|hypothetical-protein
MVETQVKYIVVGHHSRCASAALLAGELGAHLLIDEGNHGANWNHRRAIEWAAEQPCRVVVLEDDALPVRGFRDKITGWLARFPGDMLSFYLGTGRPPQYQMQIAERLINADKVRSDFIMLQRLIHGVCYSIPPQSISRVLSQWDCSKPADYAVGDAYGGVVVYPCWSLVDHADGEPVERHPDSAPRTERRRAWRLA
>NZ_CP030347.1|WP_032619870.1|3394205_3394556_-|HNH-endonuclease
MPALIPRACRKRGCPGTTTDRSGYCPKHLNEGWQQHQRGQSRHQRGYGSKWDRLRPIVLDRDKHLCQECLRNGRYTPAETVDHITAKANGGTDDLSNLESLCKPCHRAKTAVERLK
>NZ_CP030347.1|WP_032635108.1|3402844_3403141_-|hypothetical-protein
MNHSDFVRKYSFDNPLQRLVMLRILMGGSMDGEGERVIDHQVLYEFCCCSKQAMFKEIKALERAGFLKVRKIGALDTGLAVRLEPARGYTITPVQEFV
>NZ_CP030347.1|WP_001064664.1|3403166_3403394_-|transcriptional-regulator
MNNQLLAWRKCSTKEQWADLAKKSGTSPGYLNLIAYGHRNASPRLALAIESASKSFVNKPVITKEQLVFKSGSEV
>NZ_CP030347.1|WP_032635107.1|3403505_3404195_+|helix-turn-helix-domain-containing-protein
MDIKSIRKSNLEQLIVEFLKRDRHTTKAAFAELCGISPAQLSQLLGGNSHRNIGDKMARKIEQALDRPFGWLDSPHNAPDSIKSELEYVGSVRPGAVPVVGEAILGIDGMIDMLEIHAGWLQIYSADRDAYGLKVKGDSMWPRIQSGEYVVIEPNTQVHTGDEVFVRTKDGHNMIKIMSKTRDGDYQFSSVNSDHRPITLSPDSIEKMHFVSAIVKHTRYVDNDEMPAL
>NZ_CP030347.1|WP_032635106.1|3404385_3404598_+|hypothetical-protein
MNVEQMLSENGTVHKIAMDIDRVINALEYAESDPDVAYKPAALIKICINQLRDNLSVINHELGYDWLENK
>NZ_CP030347.1|WP_032635105.1|3404598_3405018_+|hypothetical-protein
MKTPLDMLHDIVAQISEGNTLLEMIYKNTEEMNEETDCGLACLIRSFDKTRETAYAYIEELANNAKTVTPPIGNRDDIADDIFYATVSAAKLRELAHVYNESYFSGKDSDDADCLMASLIFDNTIKVHELLKSIEIKLN
>NZ_CP030347.1|WP_032635104.1|3405087_3405747_+|AP2-domain-containing-protein
MNQSEIDSLLESKVSRRRHLKSLEYGVGHYDVEFPSTIIIDGIMCHHSAHRRWSGMLSRCYKPHTEQLEHSYAGCTVAEEWLRFSNFLAFWKENYRDGYVLDKDLLHPGNKIYGPEYCVFVPPALNLFTGDRARLRGKYPQGVIWHKQSGKFRARINVNGKISHLGLFNTTQEAHLAWHTAKMQQAKDWKPTCDEIHPLLHAGLMKKIAGMQQRFTQPR
>NZ_CP030347.1|WP_016240231.1|3405883_3406087_+|hypothetical-protein
MLSKDSSLETAKNTADNLYQLMELINSNIIDMDIEQIISLSGLCLDLSAQVSMWMDSEFERREKQRN
>NZ_CP030347.1|WP_000795057.1|3406067_3406430_+|hypothetical-protein
MKNNVIETYRRRILKAALLRHQRKTGTTCIVITLPKGGITTMELTEILFDGLLCRFEKMARSEHGPVAGDKAIRDLYRNAVDVNGHGEYLTESGKLLVDELVAELVEHAKKTAAITQEHS
>NZ_CP030347.1|WP_032635103.1|3406426_3406648_+|hypothetical-protein
MTLTAIRIPEWVHERAVRVLRQHRAGRIHPRRMHKTGYLSLSVNLRWRLLSRDGGQSWEVMSHERYSKVKDRK
>NZ_CP030347.1|WP_032635102.1|3406644_3407052_+|hypothetical-protein
MNDKRISTTSIDSAFAKELQPVYVVSRHGYSRRFLSRSAAISNLAHYMVTKTFHRAGLNTNEPDEPVFSNGVLVNRMGQHTQQYLFAHNRCMRRIRRILERKREARKWLGKWDAMHDRFVREQAELQACKPEGLR

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Crispr_ID: NZ_CP030347_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030347_3

4250348-4250436

Orphan

I-F

Consensus_repeat	Method
ATTTCTAAGCTGCCTGCCCGGCAGTGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030347_3

>merge|NZ_CP030347|3|4250348-4250436|CRISPRCasFinder
ATTTCTAAGCTGCCTGCCCGGCAGTGAACAAAACACGCTGGCGCGTGTCGGTGTCGCCGTATTTCTAAGCTGCCTGCCCGGCAGTGAAC

>NZ_CP030347|3|3|4250348-4250436|CRISPRCasFinder
ATTTCTAAGCTGCCTGCCCGGCAGTGAAC	AAAACACGCTGGCGCGTGTCGGTGTCGCCGT
ATTTCTAAGCTGCCTGCCCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030347.1\|WP_006809408.1\|4238885_4239107_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP030347.1\|WP_023303384.1\|4248870_4249839_+\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP030347.1\|WP_032619987.1\|4241114_4242230_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP030347.1\|WP_017384857.1\|4262413_4262899_-\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP030347.1\|WP_023296208.1\|4252472_4253474_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP030347.1\|WP_015570984.1\|4239177_4241118_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP030347.1\|WP_017693708.1\|4243342_4245001_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP030347.1\|WP_017384854.1\|4258119_4258560_-\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP030347.1\|WP_015570988.1\|4246163_4247063_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP030347.1\|WP_023303381.1\|4258662_4261365_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|119365
NZ_CP030347.1\|WP_023303382.1\|4253484_4254921_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP030347.1\|WP_023303380.1\|4261619_4262417_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP030347.1\|WP_017693711.1\|4250715_4252434_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP030347.1\|WP_032103415.1\|4262895_4264029_-\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP030347.1\|WP_154294646.1\|4250187_4250325_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030347.1\|WP_017384852.1\|4255013_4256027_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP030347.1\|WP_032619990.1\|4247207_4248860_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP030347.1\|WP_026080729.1\|4245291_4245987_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP030347.1\|WP_017693713.1\|4256173_4257985_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
NZ_CP030347.1\|WP_017693707.1\|4242389_4243346_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343

Protein	Function_ID	Function_description	E-value
NZ_CP030347.1\|WP_006809408.1\|4238885_4239107_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP030347.1\|WP_023303384.1\|4248870_4249839_+\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP030347.1\|WP_032619987.1\|4241114_4242230_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP030347.1\|WP_017384857.1\|4262413_4262899_-\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	2.13746e-29
NZ_CP030347.1\|WP_023296208.1\|4252472_4253474_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP030347.1\|WP_015570984.1\|4239177_4241118_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP030347.1\|WP_017693708.1\|4243342_4245001_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP030347.1\|WP_017384854.1\|4258119_4258560_-\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	5.32861e-87
NZ_CP030347.1\|WP_015570988.1\|4246163_4247063_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.69399e-117
NZ_CP030347.1\|WP_023303381.1\|4258662_4261365_-\|PKD-domain-containing-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	1.3015e-124
NZ_CP030347.1\|WP_023303382.1\|4253484_4254921_+\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.06263e-140
NZ_CP030347.1\|WP_023303380.1\|4261619_4262417_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.87481e-40
NZ_CP030347.1\|WP_017693711.1\|4250715_4252434_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP030347.1\|WP_032103415.1\|4262895_4264029_-\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	6.87481e-40
NZ_CP030347.1\|WP_017384852.1\|4255013_4256027_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.05058e-52
NZ_CP030347.1\|WP_032619990.1\|4247207_4248860_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP030347.1\|WP_026080729.1\|4245291_4245987_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
NZ_CP030347.1\|WP_017693713.1\|4256173_4257985_-\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	2.7565e-72
NZ_CP030347.1\|WP_017693707.1\|4242389_4243346_+\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.82706e-128

>NZ_CP030347.1|WP_154294646.1|4250187_4250325_+|hypothetical-protein
MQASAFAFGTSVGPVSVSATGLFAGWHYVYPAYIVPTACTAVNRG
>NZ_CP030347.1|WP_023303384.1|4248870_4249839_+|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSRELLQSVPDIANRTVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP030347.1|WP_032619990.1|4247207_4248860_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLRGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPNLLAILNEKFGLRSVTNVEDDMKQLLSA
>NZ_CP030347.1|WP_015570988.1|4246163_4247063_+|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP030347.1|WP_026080729.1|4245291_4245987_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP030347.1|WP_017693708.1|4243342_4245001_-|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP030347.1|WP_017693707.1|4242389_4243346_+|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>NZ_CP030347.1|WP_032619987.1|4241114_4242230_-|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWNVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGESREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP030347.1|WP_015570984.1|4239177_4241118_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP030347.1|WP_006809408.1|4238885_4239107_+|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>NZ_CP030347.1|WP_017693711.1|4250715_4252434_+|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP030347.1|WP_023296208.1|4252472_4253474_+|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKAITQYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVEHWQAFLQR
>NZ_CP030347.1|WP_023303382.1|4253484_4254921_+|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLQKLHLPGVTCHNVDLSWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALLQTPVKQVIFLSSLQAPEHEQSDHLRARQLTAETLRSARIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRHRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDLALRALIPQELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPWLKVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEEKRENN
>NZ_CP030347.1|WP_017384852.1|4255013_4256027_+|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>NZ_CP030347.1|WP_017693713.1|4256173_4257985_-|PKD-domain-containing-protein
MNKRTLLSVLIAGACVAPLMAQAANLKETSSEPYTIKASDLAKKEKELTDFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDEGSSETPDETPVTPTPTPSDDETPAPTPTPDETPVVVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDPDGNTLTYTWRSQDGQTVTGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNAPTYYEPGAGLAWAEAWTAL
>NZ_CP030347.1|WP_017384854.1|4258119_4258560_-|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWNKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>NZ_CP030347.1|WP_023303381.1|4258662_4261365_-|PKD-domain-containing-protein
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFALVEVDQAAQDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAAGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTSLKENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTIEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSGWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIEDVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHQAALRAPAWRPDTDYTTENGVNALLSQGVQPGKIVVGAGMYGRGWTGVHGYTGNNPFTGTATGMVKGTWEPGVVDYRQIVNEYKGKPGWEYGYDADAEAPYVFNKTTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGDATPVDPEVTNHAPIASSADQNVSGPVTVTLDGSASSDPDGDAITYKWTQVSGPSVTITNSTKAKATFNVAAATSDQTMVFRLTVTDAKGLSNAIDIQVVNKAPKANQAPVLNPMEAITLESGETYALHAQAADPDGDALTYAWSVPADMHATGSDSANVNITAPEVSSTSTYTLSVVVSDGKTSVQSNVQVTVNPKAAPAPVPDDEDTNPADDVTPPADDVTPPSDKGSCDAPVDANASKYAAWESSKIYNGGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>NZ_CP030347.1|WP_023303380.1|4261619_4262417_-|prepilin-peptidase
MNTFSLMRDAFPVGFPIMSAILGGIVGSFLGVVAERVPGMVMDEEGSGNLLFPASNCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELISALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGAWCGWQVLPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFAGIVVFMSQQFAFTF
>NZ_CP030347.1|WP_017384857.1|4262413_4262899_-|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSTREKIILKICAVAIVGAVVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRQEGQTLSFVLNRVNVYELRSWLREINQTSGVRLQKINLTPVDHLSDVKAQVQLTWSKNA
>NZ_CP030347.1|WP_032103415.1|4262895_4264029_-|general-secretion-pathway-protein-GspL
MKQVLFVRPDSREGGKIMWCESGSERVEVVDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLHKKGADVDAVAIDADRLRAALTRCQEAGLNVIQALPDAWLLPVTTGGSTLVAQDDSYWLRLSPHVAGEMEATLLPLLMQKAGVGEVWCYGDAPAKVHVDVQHAWQHPLALIQPQWQTCRVNLLHGEFSLKAGNGRAAKSMKAAMVAAGVLSVALLLGPRIAMAWMLVQQENRVQEEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLDELENARQSVPAMEIELLEYDAQQNTLTLSVSAQNQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	JF974302	Vibrio phage VBpm10, * SEQUENCING IN PROGRESS *, 8 unordered pieces	21037-21067	6	0.806
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592513	Vibrio phage 1.142.O._10N.261.49.E11, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592412	Vibrio phage 1.028.O._10N.286.45.B6, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592527	Vibrio phage 1.159.O._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592588	Vibrio phage 1.217.O._10N.261.45.A1, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592589	Vibrio phage 1.219.O._10N.261.45.E2, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592524	Vibrio phage 1.156.O._10N.261.45.A6, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592669	Vibrio phage 2.159.A._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592670	Vibrio phage 2.159.B._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	MG592507	Vibrio phage 1.136.O._10N.261.45.E11, partial genome	26631-26661	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1534665-1534695	7	0.774
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	62534-62564	8	0.742
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	NZ_CP035511	Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence	283146-283176	8	0.742
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	22328-22358	9	0.71
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	475099-475129	9	0.71
NZ_CP030347_3	3.1\|4250377\|31\|NZ_CP030347\|CRISPRCasFinder	4250377-4250407	31	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	714186-714216	10	0.677
NZ_CP030347_1	1.1\|3048272\|58\|NZ_CP030347\|CRISPRCasFinder	3048272-3048329	58	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	15954-16011	12	0.793

1. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 6, identity: 0.806

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
acaatgctctggcgcgtttcagtgtcgccgt	Protospacer
* **..* ********* **.**********

2. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

3. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

4. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

5. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

6. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

7. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

8. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

9. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

10. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 7, identity: 0.774

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgt	Protospacer
*  *..* ********* **.**********

11. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

aaaacacg----ctggcgcgtgtcggtgtcgccgt	CRISPR spacer
----cccggcacctggcgcgtgacggtctcgccgt	Protospacer
    * **    ********** **** *******

12. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 8, identity: 0.742

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
tgagatcgcgggcgagtgtcggtgtcgccgc	Protospacer
 .*.  *** **** ***************.

13. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 8, identity: 0.742

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
tagaactgctggcgcgtgtcggcatcgccga	Protospacer
 *.*  .***************..******

14. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.71

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
atcctgggctgccgcgtgtcgatgtcgccgg	Protospacer
*   .. **** *********.********

15. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.71

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
atcctgggctgccgggtgtcggtgtcgccgg	Protospacer
*   .. **** ** ***************

16. spacer 3.1|4250377|31|NZ_CP030347|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.677

aaaacacgctggcgcgtgtcggtgtcgccgt	CRISPR spacer
ctgcggcgctggcgcgggtcggagtcgcccc	Protospacer
  .  .********** ***** ****** .

17. spacer 1.1|3048272|58|NZ_CP030347|CRISPRCasFinder matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 12, identity: 0.793

gaaacgataaaaagccgggtggcggctacgccttacccggcctacatgttctacatat	CRISPR spacer
tcgcaaataaaaagccgggtggcggctacgccttacccggcctacatcgtctgcttga	Protospacer
  .  .*****************************************  ***.* *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

210670 : 218175

Enterobacteria_phage(85.71%)

integrase

attL 202242:202256|attR 218827:218841

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
202242:202256	attL	NA	NA	NA	NA
WP_032620857.1\|210670_211120_-	hypothetical protein	Q7M298	Enterobacteria_phage	9.7e-46	70.8
WP_032620855.1\|211112_211412_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	1.2e-31	70.1
WP_032620854.1\|211404_211959_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.5e-35	72.1
WP_026094409.1\|211955_212222_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.4e-22	62.5
WP_032620852.1\|212784_213528_+	hypothetical protein	NA	NA	NA	NA
WP_023323621.1\|213530_213749_+	phage transcriptional activator	Q7M294	Enterobacteria_phage	1.0e-16	68.2
WP_017692853.1\|213777_214341_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	6.0e-61	65.9
WP_032620851.1\|214679_215819_+	ATP-binding protein	NA	NA	NA	NA
WP_080288371.1\|215815_216877_+	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_032620849.1\|216912_218175_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.2e-74	40.4
218827:218841	attR	NA	NA	NA	NA

DBSCAN-SWA_2

332198 : 379980

Vibrio_phage(25.0%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003855994.1\|332198_333203_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_003855992.1\|333205_334465_-\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_003855991.1\|334521_335802_-	GTPase HflX	NA	NA	NA	NA
WP_003855990.1\|335876_336188_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_023302956.1\|336273_337224_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_022650252.1\|337216_339061_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.2e-59	30.4
WP_015572465.1\|339070_340408_-	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	3.3e-17	30.1
WP_003855970.1\|340424_340886_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_032620824.1\|340878_342402_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_015572463.1\|342400_343540_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_021264257.1\|344728_345475_+	hypothetical protein	NA	NA	NA	NA
WP_021264256.1\|345594_345807_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_021264255.1\|345849_346725_+	ParA family protein	NA	NA	NA	NA
WP_021264254.1\|346708_346957_+	hypothetical protein	NA	NA	NA	NA
WP_023912118.1\|346949_348584_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_021205172.1\|348599_349160_+	DUF2857 domain-containing protein	NA	NA	NA	NA
WP_022580260.1\|349163_350408_+	hypothetical protein	NA	NA	NA	NA
WP_021264252.1\|350724_351507_+	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
WP_021264251.1\|351503_352031_+	DUF3158 family protein	NA	NA	NA	NA
WP_021264250.1\|352104_352557_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_021264249.1\|352830_354843_+	DNA topoisomerase III	A0A076FM50	Aureococcus_anophage	7.0e-11	23.1
WP_021264047.1\|356707_357271_+	hypothetical protein	NA	NA	NA	NA
WP_077946514.1\|358714_359143_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_001257840.1\|359864_361040_-	tetracycline efflux MFS transporter Tet(G)	NA	NA	NA	NA
WP_000163574.1\|361143_361770_+	tetracycline resistance transcriptional repressor TetR(G)	NA	NA	NA	NA
WP_001747812.1\|361766_361949_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214125.1\|361976_363191_-	chloramphenicol/florfenicol efflux MFS transporter FloR2	S4TR35	Salmonella_phage	9.8e-16	23.7
WP_111978112.1\|363711_365241_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_050597109.1\|365431_367015_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	6.9e-163	62.8
WP_032634098.1\|367265_368339_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	NA	NA	NA	NA
WP_050597110.1\|368335_369226_+	metallophosphoesterase	NA	NA	NA	NA
WP_032634099.1\|369251_370007_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB4	NA	NA	NA	NA
WP_072031533.1\|370086_370614_-	hypothetical protein	NA	NA	NA	NA
WP_111978114.1\|370841_372374_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_032634100.1\|373132_374347_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	7.0e-22	30.0
WP_111978116.1\|374799_376338_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_023911614.1\|376961_377756_+	aminoglycoside 3-N-acetyltransferase	O64018	Bacillus_phage	7.8e-30	29.9
WP_111978118.1\|378450_379980_-\|transposase	IS91 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

560476 : 606419

Enterobacteria_phage(21.43%)

portal,integrase,terminase,holin,protease,plate,tRNA,tail

attL 556007:556022|attR 585177:585192

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
556007:556022	attL	NA	NA	NA	NA
WP_003860298.1\|560476_561889_-	replicative DNA helicase	O80281	Escherichia_phage	8.2e-200	78.3
WP_003860300.1\|561949_562933_+	quinone oxidoreductase	NA	NA	NA	NA
WP_017382623.1\|563117_563360_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_050597113.1\|563496_564534_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_032634111.1\|564621_565716_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	3.1e-178	83.7
WP_032634139.1\|565909_566680_-	hypothetical protein	Q6J1W3	Lactobacillus_phage	7.3e-09	30.3
WP_032634112.1\|566944_567190_+	DinI-like family protein	Q687E4	Enterobacteria_phage	2.9e-20	63.8
WP_133259045.1\|567173_567440_+	hypothetical protein	NA	NA	NA	NA
WP_012906750.1\|567640_567820_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.3e-17	72.9
WP_032634114.1\|567841_568252_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	1.9e-35	50.4
WP_032634115.1\|568333_568900_+	serine acetyltransferase	NA	NA	NA	NA
WP_032634116.1\|568903_569326_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	1.0e-25	48.6
WP_082194851.1\|569327_571559_-\|tail	phage tail protein	A0A0F7LDR4	Escherichia_phage	7.2e-57	38.4
WP_032634117.1\|571561_572113_-\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	3.3e-27	44.1
WP_032634118.1\|572105_573020_-\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	7.0e-59	45.3
WP_023299874.1\|573003_573357_-	hypothetical protein	E5FFH4	Burkholderia_phage	5.0e-21	50.0
WP_032634119.1\|573393_574512_-	late control protein D	R9TNM7	Vibrio_phage	4.1e-37	33.4
WP_032634120.1\|574514_574730_-\|tail	tail protein	R9TR63	Vibrio_phage	7.5e-12	51.4
WP_032634121.1\|574704_575175_-\|tail	phage tail protein	D4HTW5	Vibrio_phage	2.4e-15	34.1
WP_032635091.1\|577376_577664_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_023299868.1\|577715_578222_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_032635090.1\|578218_579688_-\|tail	tail protein	R9TMQ0	Vibrio_phage	3.7e-78	46.8
WP_032635089.1\|579726_580350_-\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	9.4e-07	30.8
WP_032635088.1\|580342_580897_-	hypothetical protein	NA	NA	NA	NA
WP_059512105.1\|580905_581568_-	hypothetical protein	R9TR34	Vibrio_phage	7.9e-20	34.3
WP_048208474.1\|581569_581926_-	hypothetical protein	NA	NA	NA	NA
WP_032658106.1\|581925_582261_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	9.9e-11	42.7
WP_111978120.1\|582329_584387_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	4.6e-199	53.2
WP_032634300.1\|584379_585900_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.6e-153	55.4
585177:585192	attR	NA	NA	NA	NA
WP_023299859.1\|585908_586124_-	hypothetical protein	NA	NA	NA	NA
WP_032634299.1\|586120_588241_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	8.3e-305	74.8
WP_032619489.1\|588244_588748_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	5.2e-48	62.3
WP_032634295.1\|589618_590155_-	hypothetical protein	K7PHH7	Enterobacteria_phage	1.9e-80	91.8
WP_032634294.1\|590151_590688_-	lysozyme	K7PM52	Enterobacteria_phage	1.5e-82	80.6
WP_032634292.1\|590687_590903_-\|holin	holin	H9C183	Pectobacterium_phage	5.0e-24	73.9
WP_032634291.1\|590973_592026_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.6e-174	80.0
WP_016240136.1\|592176_592368_-	hypothetical protein	Q8SBE3	Shigella_phage	5.1e-20	79.0
WP_032634289.1\|592553_593261_-	antitermination protein	NA	NA	NA	NA
WP_032634287.1\|593282_594350_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.3e-106	53.4
WP_032634284.1\|594346_596074_-	DNA methyltransferase	H9C171	Pectobacterium_phage	1.5e-224	59.8
WP_032634317.1\|596066_596957_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.4e-138	79.9
WP_032634282.1\|596959_597823_-	GntR family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	2.1e-52	79.4
WP_032634280.1\|597819_597999_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_032634315.1\|598000_598645_-	antirepressor	A0A2I7RHG4	Vibrio_phage	5.7e-47	51.2
WP_032634277.1\|598874_599432_-	hypothetical protein	A0A1C9II13	Salmonella_phage	4.0e-65	67.0
WP_032634276.1\|599475_599676_-	transcriptional regulator	U5P445	Shigella_phage	3.5e-24	84.6
WP_032634275.1\|599764_600439_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	1.1e-114	85.2
WP_032634274.1\|600607_600802_+	hypothetical protein	NA	NA	NA	NA
WP_032634272.1\|600779_601034_-	hypothetical protein	NA	NA	NA	NA
WP_154598144.1\|601032_601188_+	hypothetical protein	NA	NA	NA	NA
WP_032634314.1\|601544_601916_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.7e-59	94.3
WP_032634271.1\|601973_602801_+	YfdQ family protein	Q8HAA2	Salmonella_phage	1.7e-141	91.6
WP_032634270.1\|602936_603476_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	3.5e-74	74.3
WP_032634269.1\|603463_603661_+	hypothetical protein	NA	NA	NA	NA
WP_109923596.1\|603657_603954_+	hypothetical protein	NA	NA	NA	NA
WP_032634267.1\|604184_604493_+	hypothetical protein	M9NZE4	Enterobacteria_phage	3.0e-14	88.0
WP_032634265.1\|604494_605064_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.1e-77	72.5
WP_032634264.1\|605102_605375_+	pyocin activator protein PrtN	K7PGU0	Enterobacteria_phage	3.4e-38	87.6
WP_032634262.1\|605409_605871_-	hypothetical protein	NA	NA	NA	NA
WP_032634261.1\|605876_606419_-	SocA family protein	A0A139ZPG5	Marinitoga_camini_virus	6.3e-07	27.8

DBSCAN-SWA_4

830539 : 839113

Enterobacteria_phage(100.0%)

integrase

attL 815803:815816|attR 832489:832502

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
815803:815816	attL	NA	NA	NA	NA
WP_032634248.1\|830539_831715_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.7e-204	89.4
WP_032634246.1\|831720_833097_+	hypothetical protein	NA	NA	NA	NA
832489:832502	attR	NA	NA	NA	NA
WP_032634244.1\|833309_833873_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.9e-61	65.9
WP_032634242.1\|833901_834120_-	hypothetical protein	Q7M294	Enterobacteria_phage	5.1e-16	66.7
WP_032634239.1\|834122_834866_-	hypothetical protein	NA	NA	NA	NA
WP_032634237.1\|835403_835670_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.4e-31	73.9
WP_032634234.1\|835666_836224_+	ash family protein	Q7M2A7	Enterobacteria_phage	2.2e-31	67.0
WP_032634233.1\|836220_836448_+	hypothetical protein	NA	NA	NA	NA
WP_032634232.1\|836444_836765_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_032634231.1\|836779_839113_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	85.1

DBSCAN-SWA_5

1247875 : 1275186

uncultured_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020833813.1\|1247875_1248718_+\|transposase	transposase	NA	NA	NA	NA
WP_000351431.1\|1248704_1250828_+\|transposase	transposase	NA	NA	NA	NA
WP_001049182.1\|1250827_1252276_+	ATP-binding protein	NA	NA	NA	NA
WP_024143025.1\|1252317_1253874_+\|transposase	transposase	NA	NA	NA	NA
WP_000262426.1\|1253885_1254812_+	hypothetical protein	NA	NA	NA	NA
WP_001097217.1\|1255174_1255474_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004118028.1\|1256036_1257863_+	AAA family ATPase	NA	NA	NA	NA
WP_000694954.1\|1258029_1258380_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.1e-19	53.3
WP_013087110.1\|1258461_1259430_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	6.1e-186	99.4
WP_000790483.1\|1259589_1260021_-	silver-binding protein SilE	NA	NA	NA	NA
WP_000555738.1\|1260270_1261746_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.9e-26	29.3
WP_000697969.1\|1261738_1262419_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	36.0
WP_000475511.1\|1262608_1263994_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246155.1\|1264021_1264375_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_000157620.1\|1264488_1265781_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_032620969.1\|1265791_1268938_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	NA	NA	NA
WP_000758228.1\|1269024_1269465_+	hypothetical protein	NA	NA	NA	NA
WP_032620970.1\|1269591_1272039_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	34.9
WP_000843494.1\|1272079_1272277_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_000287501.1\|1272310_1273048_-	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	1.0e-12	41.0
WP_001067855.1\|1273316_1274021_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_032620177.1\|1274205_1275186_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	4.0e-185	99.1

DBSCAN-SWA_6

1678897 : 1721738

Salmonella_phage(76.74%)

head,portal,integrase,lysis,terminase,capsid,plate,tRNA,tail

attL 1673422:1673441|attR 1728756:1728775

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1673422:1673441	attL	NA	NA	NA	NA
WP_032618958.1\|1678897_1680457_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	9.6e-08	28.7
WP_017382401.1\|1680453_1680948_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_017692642.1\|1681093_1681858_+	siderophore-interacting protein	NA	NA	NA	NA
WP_017692643.1\|1681858_1683028_-	DNA repair ATPase	NA	NA	NA	NA
WP_032610576.1\|1683405_1684419_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	4.8e-117	60.2
WP_087920841.1\|1684428_1685334_-	NAD-dependent DNA ligase	NA	NA	NA	NA
WP_032610574.1\|1685339_1685954_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.2e-38	41.4
WP_015386350.1\|1686055_1686292_+	hypothetical protein	NA	NA	NA	NA
WP_015386351.1\|1686326_1686836_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.0e-83	93.5
WP_015386352.1\|1686843_1687044_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	8.7e-31	90.9
WP_032610572.1\|1687007_1687349_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.5e-51	85.8
WP_001744223.1\|1687416_1687650_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	5.4e-24	80.5
WP_032634595.1\|1687649_1687877_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.9e-35	93.3
WP_032634592.1\|1687873_1688731_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	4.1e-117	74.0
WP_032634589.1\|1688727_1691121_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	91.1
WP_032610566.1\|1691282_1691471_+	hypothetical protein	A0A1S6L006	Salmonella_phage	5.7e-24	91.9
WP_001217561.1\|1691483_1691717_+	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_154818865.1\|1691894_1692101_+	hypothetical protein	NA	NA	NA	NA
WP_032634586.1\|1692188_1693238_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	4.2e-156	79.5
WP_017382378.1\|1693237_1695001_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	3.2e-312	87.7
WP_032634584.1\|1695150_1695978_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.7e-73	64.6
WP_014884904.1\|1695993_1697142_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.2e-132	68.8
WP_006777754.1\|1697145_1697799_+\|terminase	Small terminase subunit	E5G6M7	Salmonella_phage	5.2e-56	56.1
WP_014884903.1\|1697897_1698365_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.3e-48	58.7
WP_000868184.1\|1698364_1698568_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_014884902.1\|1698571_1698787_+	hypothetical protein	E5G6N0	Salmonella_phage	2.0e-20	66.2
WP_014884901.1\|1698767_1699283_+	lysozyme	E5G6N1	Salmonella_phage	1.8e-72	76.5
WP_014884900.1\|1699279_1699708_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	4.0e-57	85.0
WP_014884898.1\|1699803_1700235_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	3.5e-69	89.5
WP_014884897.1\|1700227_1700674_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.4e-60	81.1
WP_032634579.1\|1700742_1701321_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.4e-105	96.4
WP_014884895.1\|1701317_1701677_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.3e-53	89.8
WP_014884894.1\|1701663_1702572_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	6.1e-148	92.4
WP_014884893.1\|1702564_1703170_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	8.1e-112	94.0
WP_032634577.1\|1703166_1704573_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	3.5e-142	74.0
WP_124304495.1\|1704650_1704938_+	hypothetical protein	NA	NA	NA	NA
WP_032634171.1\|1705374_1705848_-\|tail	phage tail protein	F1BUP0	Erwinia_phage	3.3e-52	59.6
WP_133259046.1\|1705943_1706384_-	hypothetical protein	NA	NA	NA	NA
WP_032634575.1\|1706407_1706995_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	6.2e-85	85.2
WP_015386375.1\|1707053_1707806_+	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	1.1e-62	51.1
WP_032634572.1\|1707886_1709059_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.5e-210	92.8
WP_007848874.1\|1709068_1709584_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	7.6e-87	93.0
WP_014884889.1\|1709638_1709941_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.1e-40	90.0
WP_007848878.1\|1709955_1710075_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	3.3e-14	92.3
WP_032634569.1\|1710067_1713601_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	68.4
WP_017384021.1\|1713600_1714086_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.1e-63	95.3
WP_032634567.1\|1714082_1715183_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.1e-183	92.3
WP_042863286.1\|1715252_1715471_+	DNA-binding transcriptional regulator	Q53ZE7	Salmonella_virus	3.2e-26	73.6
WP_017384024.1\|1715807_1716314_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_015571912.1\|1716414_1718259_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_032634565.1\|1718411_1720157_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-76	39.0
WP_001144069.1\|1720272_1720488_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_015571911.1\|1720724_1721738_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.9
1728756:1728775	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2327307 : 2371855

Salmonella_phage(37.25%)

holin,tail,terminase,integrase

attL 2319498:2319513|attR 2354338:2354353

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2319498:2319513	attL	NA	NA	NA	NA
WP_003860601.1\|2327307_2328774_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.0e-88	39.1
WP_006811514.1\|2328841_2330419_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_032634917.1\|2330611_2331865_+\|integrase	site-specific integrase	G9L697	Escherichia_phage	3.6e-191	80.4
WP_032634918.1\|2331861_2332413_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	2.6e-53	57.3
WP_032634919.1\|2332409_2333096_-	hypothetical protein	R9VWB9	Serratia_phage	9.8e-82	63.7
WP_032634920.1\|2333092_2333251_-	DUF1317 family protein	T1SAR0	Salmonella_phage	2.8e-16	76.9
WP_032634921.1\|2333243_2333540_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.1e-33	70.1
WP_032634922.1\|2333649_2333898_-	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	1.2e-32	79.3
WP_032634923.1\|2333949_2334969_-	recombination protein RecT	Q858E1	Salmonella_phage	4.6e-184	97.6
WP_032634924.1\|2334978_2335878_-	endonuclease	Q858E0	Salmonella_phage	1.6e-161	94.6
WP_032634926.1\|2335874_2336174_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_162843058.1\|2336170_2336320_-	hypothetical protein	T1SA20	Salmonella_phage	3.3e-11	63.8
WP_032634927.1\|2336471_2337062_-	transcriptional regulator	G9L6A6	Escherichia_phage	1.8e-79	75.5
WP_032634928.1\|2337216_2337447_+	hypothetical protein	A0A193GYK6	Enterobacter_phage	1.5e-31	84.0
WP_032634929.1\|2337595_2337805_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	2.3e-26	81.2
WP_032634930.1\|2337804_2338572_+	primosomal protein	A0A193GZ86	Enterobacter_phage	1.1e-142	93.7
WP_032634931.1\|2338568_2339354_+	replication protein	A0A193GYX1	Enterobacter_phage	1.3e-133	87.4
WP_032634933.1\|2339471_2339825_+	hypothetical protein	T1SA23	Salmonella_phage	3.3e-41	74.1
WP_032634935.1\|2340490_2341168_+	hypothetical protein	G9L6B1	Escherichia_phage	1.3e-06	33.6
WP_032634936.1\|2341277_2341664_+	ead/Ea22-like family protein	K7P6V8	Enterobacteria_phage	2.1e-33	93.8
WP_163375019.1\|2341666_2341843_+	hypothetical protein	NA	NA	NA	NA
WP_050597125.1\|2341853_2342438_+	hypothetical protein	G8C7V0	Escherichia_phage	3.0e-39	62.0
WP_032634937.1\|2342437_2342743_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	1.7e-33	69.3
WP_032634938.1\|2342732_2342999_+	hypothetical protein	K7PKM4	Enterobacterial_phage	2.4e-20	82.5
WP_032634939.1\|2342986_2343166_+	hypothetical protein	NA	NA	NA	NA
WP_032634940.1\|2343158_2343497_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.9e-46	80.4
WP_032634941.1\|2343574_2343904_+	hypothetical protein	K7PGV5	Enterobacterial_phage	2.5e-30	64.3
WP_032634942.1\|2343963_2344548_+\|terminase	terminase small subunit	A0A193GYG6	Enterobacter_phage	1.5e-86	88.4
WP_032634943.1\|2344544_2346020_+	hypothetical protein	Q858H3	Salmonella_phage	1.3e-272	90.8
WP_050597126.1\|2346063_2346321_-	hypothetical protein	A0A248SKZ7	Klebsiella_phage	6.0e-08	43.4
WP_032634944.1\|2347140_2347347_+	hypothetical protein	T1SA67	Salmonella_phage	1.6e-08	95.6
WP_032634945.1\|2347361_2349032_+\|tail	tail protein	T1S9Z7	Salmonella_phage	2.8e-303	94.8
WP_032634946.1\|2349028_2349325_+	hypothetical protein	T1SBI9	Salmonella_phage	9.2e-45	90.8
WP_032634947.1\|2349327_2350032_+	peptidase	G9L6C4	Escherichia_phage	5.6e-72	82.9
WP_032634948.1\|2350049_2351036_+	phage protein	G9L6C5	Escherichia_phage	4.8e-162	85.7
WP_032634949.1\|2351087_2351528_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.8e-65	90.4
WP_032634950.1\|2351532_2351898_+	hypothetical protein	G9L6C7	Escherichia_phage	2.2e-35	68.6
WP_032634951.1\|2351949_2352273_+	hypothetical protein	A0A193GYH8	Enterobacter_phage	3.3e-48	86.9
WP_032634952.1\|2352272_2352878_+	hypothetical protein	A0A193GYT2	Enterobacter_phage	2.4e-100	86.1
WP_032634953.1\|2352877_2355343_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	92.6
2354338:2354353	attR	NA	NA	NA	NA
WP_032634954.1\|2355342_2355807_+	hypothetical protein	T1SA73	Salmonella_phage	2.6e-78	88.3
WP_032634955.1\|2355806_2356346_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	4.4e-61	73.3
WP_032634956.1\|2356358_2358887_+	bacteriophage protein	Q858G0	Salmonella_phage	0.0e+00	94.4
WP_032634957.1\|2358886_2360776_+	hypothetical protein	Q858F9	Salmonella_phage	0.0e+00	91.0
WP_032634958.1\|2360775_2363532_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	97.2
WP_032634960.1\|2363755_2364016_-	hypothetical protein	T1SA06	Salmonella_phage	9.9e-35	80.2
WP_072031552.1\|2366694_2368110_-	hypothetical protein	A0A0N7CG72	Salmonella_phage	1.1e-13	28.7
WP_032634963.1\|2368113_2369028_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	2.4e-160	92.4
WP_032634964.1\|2369024_2369387_-	GtrA family protein	U5P0S6	Shigella_phage	4.4e-49	83.3
WP_032634965.1\|2369540_2369945_+	membrane protein	T1SA79	Salmonella_phage	1.3e-54	83.6
WP_032634966.1\|2369931_2370219_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	3.4e-28	63.7
WP_032634967.1\|2370208_2370838_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	5.8e-97	82.8
WP_032634968.1\|2370834_2371365_+	DUF2514 family protein	A0A193GYI0	Enterobacter_phage	5.9e-58	78.5
WP_032634969.1\|2371348_2371855_+	HNH endonuclease	A0A291AXF2	Shigella_phage	1.8e-35	48.4

DBSCAN-SWA_8

2459964 : 2560153

104

Enterobacterial_phage(23.21%)

head,portal,integrase,terminase,holin,capsid,protease,tRNA,tail

attL 2451385:2451400|attR 2502064:2502079

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2451385:2451400	attL	NA	NA	NA	NA
WP_015572231.1\|2459964_2461380_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_023295106.1\|2461431_2461797_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_015572232.1\|2461819_2462182_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_032634977.1\|2462804_2464994_+	EAL domain-containing protein	NA	NA	NA	NA
WP_006811440.1\|2465040_2466228_-	nucleoside permease NupC	NA	NA	NA	NA
WP_017383466.1\|2466573_2467812_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA
WP_015572233.1\|2467845_2468193_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_023304172.1\|2468319_2469318_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_023304171.1\|2469504_2471163_+	indolepyruvate decarboxylase	NA	NA	NA	NA
WP_032619299.1\|2471163_2472399_-	ion channel protein	NA	NA	NA	NA
WP_003861352.1\|2472604_2473570_+	glucokinase	NA	NA	NA	NA
WP_015572237.1\|2473605_2474337_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.7e-15	25.5
WP_032619300.1\|2474350_2476048_-	sensor histidine kinase	NA	NA	NA	NA
WP_023304168.1\|2476434_2477670_+	alanine transaminase	NA	NA	NA	NA
WP_099458937.1\|2477728_2477800_-	membrane protein YpdK	NA	NA	NA	NA
WP_160840461.1\|2478159_2479131_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	5.1e-76	54.7
WP_023304167.1\|2479348_2480728_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.1e-15	37.0
WP_032634979.1\|2481008_2482178_+\|integrase	integrase family protein	A0A2R2Z2Y0	Escherichia_phage	2.1e-201	85.3
WP_165298120.1\|2482161_2482347_-	DNA-binding protein	A0A2R2Z2X2	Escherichia_phage	8.9e-14	59.6
WP_032634981.1\|2483481_2484042_-	hypothetical protein	A0A0F6N6A6	Escherichia_phage	1.2e-05	44.4
WP_032634982.1\|2484038_2484866_-	hypothetical protein	K7PKM7	Enterobacterial_phage	6.0e-126	87.8
WP_050597128.1\|2484865_2485225_-	hypothetical protein	K7PJS4	Enterobacterial_phage	1.7e-45	82.4
WP_133259047.1\|2486274_2486598_+	hypothetical protein	NA	NA	NA	NA
WP_023315868.1\|2486805_2487432_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	1.6e-46	48.8
WP_023315869.1\|2487531_2487747_+	hypothetical protein	NA	NA	NA	NA
WP_032634986.1\|2487769_2488324_+	hypothetical protein	S5FXP0	Shigella_phage	6.4e-47	54.1
WP_032634987.1\|2488487_2488673_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.4e-13	69.2
WP_032634988.1\|2488656_2489610_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	2.3e-177	97.5
WP_032634989.1\|2489606_2490101_+	hypothetical protein	NA	NA	NA	NA
WP_032634990.1\|2490100_2490760_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	6.7e-96	78.9
WP_023293907.1\|2490756_2490984_+	hypothetical protein	NA	NA	NA	NA
WP_032634993.1\|2490980_2491301_+	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	1.2e-37	70.8
WP_032634995.1\|2491297_2491705_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	1.9e-56	84.3
WP_023330784.1\|2491775_2492570_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	1.1e-92	61.4
WP_032634997.1\|2492577_2493567_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	4.7e-186	93.9
WP_032634999.1\|2493579_2494158_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.6e-46	53.3
WP_022648767.1\|2494741_2495137_+	phage membrane protein	K7PHB9	Enterobacterial_phage	9.1e-64	99.2
WP_032635000.1\|2495123_2495405_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	5.3e-42	92.5
WP_032635002.1\|2495404_2496031_+	glycoside hydrolase family 19 protein	K7PJS7	Enterobacterial_phage	1.4e-111	95.2
WP_032635003.1\|2496038_2496314_+	hypothetical protein	K7PGW4	Enterobacterial_phage	2.9e-08	90.1
WP_032635005.1\|2496520_2496796_+	hypothetical protein	NA	NA	NA	NA
WP_032635006.1\|2497058_2498516_+	glycosyl transferase	K7PKP3	Enterobacterial_phage	3.5e-270	90.1
WP_157843589.1\|2498575_2499157_+	HNH endonuclease	A0A1W6DXY0	Salmonella_phage	1.1e-14	37.8
WP_032635007.1\|2499150_2499729_+	hypothetical protein	S4TR53	Salmonella_phage	1.6e-77	72.2
WP_044703918.1\|2499728_2500079_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	3.5e-51	81.0
WP_032619868.1\|2500236_2500710_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	2.9e-85	98.1
WP_032619866.1\|2500709_2502467_+\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	96.6
2502064:2502079	attR	NA	NA	NA	NA
WP_032619865.1\|2502466_2503771_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.6e-234	93.5
WP_032619863.1\|2503784_2504633_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	9.2e-138	91.8
WP_023296252.1\|2504642_2505854_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	9.5e-197	87.9
WP_032619860.1\|2505896_2506223_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	3.4e-48	82.4
WP_022648888.1\|2506231_2506570_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.0e-40	73.2
WP_032634447.1\|2506566_2507016_+	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	1.1e-73	98.0
WP_022648886.1\|2507012_2507360_+	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	3.8e-58	99.1
WP_032634444.1\|2507419_2507863_+	hypothetical protein	K7PHL2	Enterobacterial_phage	7.8e-72	93.8
WP_001549114.1\|2507871_2508255_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
WP_111978130.1\|2508977_2512469_+\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	0.0e+00	86.8
WP_006809151.1\|2512471_2512810_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	4.3e-38	59.8
WP_006809150.1\|2512806_2513565_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	1.0e-95	64.0
WP_023296258.1\|2513567_2514278_+	C40 family peptidase	F1C573	Cronobacter_phage	1.3e-97	70.2
WP_006809148.1\|2514277_2514865_+\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	3.6e-48	47.9
WP_111978132.1\|2514917_2518478_+\|tail	phage tail protein	Q9MCU0	Escherichia_phage	0.0e+00	70.6
WP_032634448.1\|2518522_2518837_+	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.8e-34	67.6
WP_032634342.1\|2518837_2519509_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	5.8e-87	73.1
WP_032634343.1\|2519616_2519850_+	hypothetical protein	E4WL42	Enterobacteria_phage	3.9e-30	78.9
WP_032634345.1\|2519908_2521207_+	hypothetical protein	G8C7K5	Escherichia_phage	9.4e-150	66.0
WP_032634348.1\|2521248_2521515_-	DinI family protein	K7PKR6	Enterobacteria_phage	1.4e-39	93.2
WP_015570278.1\|2521879_2522446_-	hydrolase	NA	NA	NA	NA
WP_017384352.1\|2522708_2524481_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_023296808.1\|2524482_2524926_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_003859747.1\|2524953_2525694_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003859749.1\|2525728_2526250_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
WP_003859751.1\|2526330_2526945_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_003859753.1\|2526953_2527964_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.4e-07	29.9
WP_032619520.1\|2528016_2528802_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_023296807.1\|2528798_2529554_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-15	29.8
WP_032103662.1\|2529631_2530576_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_023303894.1\|2530591_2531911_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	9.0e-15	40.9
WP_015570283.1\|2532028_2533000_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_003859767.1\|2533043_2534486_-	pyruvate kinase	NA	NA	NA	NA
WP_003859769.1\|2534600_2535470_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_003859771.1\|2535826_2537302_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	6.0e-76	36.2
WP_017384346.1\|2537535_2539347_+	phosphogluconate dehydratase	NA	NA	NA	NA
WP_003859774.1\|2539386_2540028_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_023303893.1\|2540102_2541281_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_015570286.1\|2541452_2542103_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_032619522.1\|2542178_2544254_+	oligopeptidase B	NA	NA	NA	NA
WP_015570288.1\|2544235_2544898_-	exodeoxyribonuclease X	NA	NA	NA	NA
WP_003859783.1\|2544922_2545573_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_003859784.1\|2545684_2545915_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	7.0e-16	61.8
WP_017384342.1\|2546052_2546424_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_017693249.1\|2546425_2547295_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_003859787.1\|2547311_2547650_+	YebY family protein	NA	NA	NA	NA
WP_017693250.1\|2547775_2547973_-	hypothetical protein	NA	NA	NA	NA
WP_023303891.1\|2548018_2548999_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_017693252.1\|2549166_2549811_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	1.5e-55	49.8
WP_003859885.1\|2549845_2550085_-	YebV family protein	NA	NA	NA	NA
WP_032619523.1\|2550191_2551655_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_017693254.1\|2551711_2554345_-	PqiB family protein	NA	NA	NA	NA
WP_020480541.1\|2554313_2555597_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_006811006.1\|2555729_2556227_+	GAF domain-containing protein	NA	NA	NA	NA
WP_003859895.1\|2556323_2557010_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_015570296.1\|2557029_2559078_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	7.8e-82	32.6
WP_015570297.1\|2559271_2560153_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_9

3368689 : 3375161

Enterobacterial_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023299884.1\|3368689_3369973_+	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.1e-09	28.3
WP_032634435.1\|3370235_3370556_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.2e-26	55.7
WP_032634437.1\|3370555_3370795_-	hypothetical protein	K7P7N3	Enterobacteria_phage	2.2e-28	74.7
WP_032634440.1\|3370870_3371452_-	recombinase family protein	A0A1S6L009	Salmonella_phage	6.8e-76	78.1
WP_050597119.1\|3371738_3373631_+	acyltransferase	A0A193GZ69	Enterobacter_phage	8.1e-118	39.0
WP_032634442.1\|3373913_3375161_-	hypothetical protein	K7PH95	Enterobacterial_phage	1.1e-107	52.1

DBSCAN-SWA_10

3379588 : 3435197

Enterobacteria_phage(47.73%)

coat,head,portal,integrase,lysis,terminase,capsid,protease,tRNA,tail

attL 3398557:3398572|attR 3417392:3417407

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032619853.1\|3379588_3380176_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	3.6e-48	47.4
WP_022648880.1\|3380175_3380886_-	C40 family peptidase	F1C573	Cronobacter_phage	1.5e-96	69.8
WP_032619855.1\|3380888_3381647_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	3.9e-95	63.2
WP_022648882.1\|3381643_3381982_-\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	7.3e-38	59.8
WP_032620356.1\|3381984_3385287_-\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	84.9
WP_032619857.1\|3385344_3385686_-	hypothetical protein	NA	NA	NA	NA
WP_032619858.1\|3385741_3386020_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.8e-42	95.7
WP_001549114.1\|3386028_3386412_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
WP_006809155.1\|3386420_3386864_-	hypothetical protein	K7PHL2	Enterobacterial_phage	4.6e-72	93.8
WP_022648886.1\|3386923_3387271_-	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	3.8e-58	99.1
WP_022648887.1\|3387267_3387717_-	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	2.9e-74	98.7
WP_022648888.1\|3387713_3388052_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.0e-40	73.2
WP_032619860.1\|3388060_3388387_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	3.4e-48	82.4
WP_023296252.1\|3388430_3389642_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	9.5e-197	87.9
WP_032619863.1\|3389651_3390500_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	9.2e-138	91.8
WP_032619865.1\|3390513_3391818_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.6e-234	93.5
WP_032619866.1\|3391817_3393575_-\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	96.6
WP_032619868.1\|3393574_3394048_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	2.9e-85	98.1
WP_032619870.1\|3394205_3394556_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.2e-51	81.9
WP_032619873.1\|3394555_3395146_-	hypothetical protein	K7PGW6	Enterobacterial_phage	9.3e-89	77.6
WP_032635115.1\|3395127_3396588_-	glycosyltransferase family 2 protein	A0A220NRM5	Escherichia_phage	8.3e-272	89.9
WP_157843456.1\|3396587_3396989_-	hypothetical protein	A0A220NRM6	Escherichia_phage	2.3e-70	94.0
WP_032635114.1\|3397302_3397764_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	4.8e-56	76.5
WP_032634767.1\|3397760_3398255_-	lysozyme	M9P0E5	Enterobacteria_phage	7.1e-90	97.6
WP_001752682.1\|3398232_3398457_-\|lysis	lysis S family protein	M9NZI9	Enterobacteria_phage	6.8e-32	91.9
3398557:3398572	attL	NA	NA	NA	NA
WP_032635112.1\|3398853_3399636_-	molecular chaperone	F1C595	Cronobacter_phage	2.4e-108	76.4
WP_032635111.1\|3399663_3401043_-	AAA family ATPase	Q8W640	Enterobacteria_phage	9.0e-175	68.1
WP_032635110.1\|3401039_3401921_-	ATP-binding protein	Q8W641	Enterobacteria_phage	3.7e-81	63.3
WP_032635109.1\|3401936_3402848_-	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	1.6e-92	63.3
WP_032635108.1\|3402844_3403141_-	hypothetical protein	NA	NA	NA	NA
WP_001064664.1\|3403166_3403394_-	transcriptional regulator	NA	NA	NA	NA
WP_032635107.1\|3403505_3404195_+	helix-turn-helix domain-containing protein	K7PK07	Enterobacteria_phage	4.6e-71	64.8
WP_032635106.1\|3404385_3404598_+	hypothetical protein	NA	NA	NA	NA
WP_032635105.1\|3404598_3405018_+	hypothetical protein	NA	NA	NA	NA
WP_032635104.1\|3405087_3405747_+	AP2 domain-containing protein	L0AQZ0	Klebsiella_phage	2.4e-45	44.0
WP_016240231.1\|3405883_3406087_+	hypothetical protein	NA	NA	NA	NA
WP_000795057.1\|3406067_3406430_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	9.6e-36	65.5
WP_032635103.1\|3406426_3406648_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	3.2e-18	63.9
WP_032635102.1\|3406644_3407052_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	1.2e-23	47.1
WP_032635101.1\|3407051_3407246_+	hypothetical protein	NA	NA	NA	NA
WP_032635100.1\|3407242_3408070_+\|protease	serine protease	Q8W654	Enterobacteria_phage	3.2e-111	84.7
WP_032635099.1\|3408115_3408859_+	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	4.6e-133	94.7
WP_032635098.1\|3408861_3409287_+	hypothetical protein	NA	NA	NA	NA
WP_029591919.1\|3409279_3409525_+	excisionase family protein	Q8W657	Enterobacteria_phage	1.9e-35	86.8
WP_032635097.1\|3409580_3410894_+\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	6.0e-221	85.6
WP_049133548.1\|3410872_3411646_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	2.3e-58	81.1
WP_003859737.1\|3411697_3412093_+	membrane protein	NA	NA	NA	NA
WP_003859735.1\|3412133_3412877_+	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A1S6L2V9	Erwinia_phage	6.1e-29	30.2
WP_023303898.1\|3412873_3413845_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_023303899.1\|3414019_3414763_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_032619519.1\|3414841_3415402_-	VOC family protein	NA	NA	NA	NA
WP_023294934.1\|3415640_3417374_+\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	2.0e-86	36.8
WP_026080697.1\|3417408_3418548_-	glycoside hydrolase family 105 protein	NA	NA	NA	NA
3417392:3417407	attR	NA	NA	NA	NA
WP_017693238.1\|3418552_3420136_-	MFS transporter	NA	NA	NA	NA
WP_023303901.1\|3420396_3420789_-	flagellar protein FlhE	NA	NA	NA	NA
WP_023303902.1\|3420788_3422867_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_006811100.1\|3422859_3424008_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_003859718.1\|3424158_3424803_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_000763862.1\|3424813_3425203_-	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	1.3e-06	31.3
WP_014884341.1\|3425220_3426270_-	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	2.3e-05	32.0
WP_017384409.1\|3426266_3427133_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_017693235.1\|3427152_3428754_-	methyl-accepting chemotaxis protein IV	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-07	77.3
WP_023303904.1\|3428798_3430466_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	5.8e-11	34.7
WP_017384412.1\|3430551_3431514_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_023303905.1\|3431510_3433895_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_032619515.1\|3433870_3434632_-	molecular chaperone	NA	NA	NA	NA
WP_015570265.1\|3434648_3435197_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_11

3469619 : 3573760

139

Cronobacter_phage(19.0%)

head,portal,integrase,lysis,terminase,holin,protease,plate,tail

attL 3538977:3538993|attR 3579235:3579251

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012906750.1\|3469619_3469799_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.3e-17	72.9
WP_032619507.1\|3469820_3470225_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	3.1e-35	49.2
WP_032635096.1\|3470265_3471336_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_032619505.1\|3471412_3471991_-\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	5.2e-52	54.9
WP_050597130.1\|3471990_3474168_-	hypothetical protein	A0A0M3ULF6	Salmonella_phage	1.5e-54	38.7
WP_032619504.1\|3474170_3474722_-\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	4.3e-27	41.0
WP_032635095.1\|3474714_3475629_-\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	2.8e-60	46.0
WP_032619502.1\|3475612_3475966_-\|plate	baseplate assembly protein	E5FFH4	Burkholderia_phage	8.5e-21	50.0
WP_032635094.1\|3476002_3477121_-	late control protein D	R9TNM7	Vibrio_phage	4.6e-36	32.6
WP_032620301.1\|3477123_3477339_-\|tail	tail protein	R9TR63	Vibrio_phage	1.8e-13	52.9
WP_032635093.1\|3477313_3477784_-\|tail	phage tail protein	D4HTW5	Vibrio_phage	2.9e-16	33.8
WP_032619498.1\|3480027_3480315_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_058671048.1\|3480366_3480873_-\|tail	phage tail protein	NA	NA	NA	NA
WP_058671049.1\|3480869_3482339_-\|tail	phage tail protein	R9TMQ0	Vibrio_phage	1.1e-77	47.1
WP_032619493.1\|3482377_3483001_-\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	7.2e-07	30.8
WP_023303465.1\|3482993_3483548_-	hypothetical protein	NA	NA	NA	NA
WP_058671051.1\|3483556_3484219_-	hypothetical protein	R9TR34	Vibrio_phage	3.2e-21	36.7
WP_023303463.1\|3484220_3484577_-	hypothetical protein	NA	NA	NA	NA
WP_032634302.1\|3484576_3484912_-	DUF2190 family protein	NA	NA	NA	NA
WP_032634880.1\|3484984_3487045_-\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	3.7e-201	57.5
WP_032634670.1\|3487034_3488555_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	4.8e-153	55.2
WP_032634673.1\|3488563_3488779_-	hypothetical protein	NA	NA	NA	NA
WP_032634676.1\|3488775_3490896_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	6.4e-305	74.8
WP_023299857.1\|3490899_3491403_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	3.1e-48	62.9
WP_032619488.1\|3491678_3491939_+	hypothetical protein	NA	NA	NA	NA
WP_032619487.1\|3492127_3492355_-	hypothetical protein	A0A1L6Z528	Klebsiella_phage	2.1e-17	71.7
WP_020690713.1\|3492427_3492631_-	hypothetical protein	A0A1W6JPG4	Morganella_phage	1.6e-11	52.9
WP_032619486.1\|3492779_3493037_-	hypothetical protein	Q8W634	Enterobacteria_phage	1.6e-16	53.3
WP_032634681.1\|3493162_3493441_-	hypothetical protein	G8C7W1	Escherichia_phage	1.0e-08	43.2
WP_032634683.1\|3493448_3494078_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.7e-101	87.1
WP_032634686.1\|3494077_3494356_-\|holin	phage holin family protein	G8C7V9	Escherichia_phage	1.5e-36	85.9
WP_017384387.1\|3494345_3494735_-	membrane protein	G8C7V8	Escherichia_phage	1.1e-58	92.2
WP_032634689.1\|3495732_3497031_+	hypothetical protein	NA	NA	NA	NA
WP_032634692.1\|3497223_3497568_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.8e-53	83.2
WP_032634695.1\|3497582_3498572_-	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	8.1e-178	88.4
WP_032634698.1\|3498568_3498958_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	8.9e-64	88.4
WP_032634701.1\|3498954_3499278_-	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	4.2e-43	76.9
WP_032634704.1\|3499274_3499934_-	DNA methyltransferase	I6PDF5	Cronobacter_phage	1.5e-98	79.3
WP_032634707.1\|3499933_3500428_-	hypothetical protein	NA	NA	NA	NA
WP_023315872.1\|3500424_3501351_-	hypothetical protein	K7PLZ7	Enterobacterial_phage	9.9e-69	55.2
WP_072031544.1\|3501313_3501520_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.5e-14	69.2
WP_032634711.1\|3501760_3502231_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.4e-74	92.9
WP_032634882.1\|3502256_3502454_-	hypothetical protein	K7PHB1	Enterobacterial_phage	1.4e-28	96.9
WP_032634713.1\|3502553_3503210_+	LexA family transcriptional regulator	K7PLZ5	Enterobacterial_phage	7.9e-121	98.6
WP_154590105.1\|3503587_3503743_+	hypothetical protein	NA	NA	NA	NA
WP_032634680.1\|3504015_3504429_+	hypothetical protein	K7PJS4	Enterobacterial_phage	1.4e-54	85.4
WP_032634715.1\|3504428_3505463_+	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	1.7e-178	94.2
WP_032634717.1\|3505449_3505689_+	hypothetical protein	K7PHA5	Enterobacterial_phage	4.9e-12	80.4
WP_032634718.1\|3505803_3506637_+	hypothetical protein	NA	NA	NA	NA
WP_072031545.1\|3506677_3506905_+	DUF4224 domain-containing protein	K7PHA0	Enterobacterial_phage	1.2e-36	96.0
WP_032634720.1\|3506904_3507915_+\|integrase	tyrosine-type recombinase/integrase	K7PLZ2	Enterobacterial_phage	3.7e-178	90.5
WP_032634721.1\|3508053_3508497_-	hypothetical protein	NA	NA	NA	NA
WP_003859652.1\|3509237_3509786_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_017384477.1\|3509842_3511675_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_017384478.1\|3511671_3512328_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_003859644.1\|3512792_3513017_+	DUF2594 family protein	NA	NA	NA	NA
WP_017384479.1\|3513081_3513804_-	transcriptional regulator SdiA	NA	NA	NA	NA
WP_003859634.1\|3514027_3514780_-	L-cystine ABC transporter ATP-binding protein YecC	G3M9Y6	Bacillus_virus	2.2e-26	35.4
WP_003859632.1\|3514776_3515445_-	cystine ABC transporter permease	NA	NA	NA	NA
WP_017384480.1\|3515466_3516453_-	D-cysteine desulfhydrase	NA	NA	NA	NA
WP_003859627.1\|3516556_3517357_-	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015570235.1\|3517443_3517995_-	flagella biosynthesis regulatory protein FliZ	NA	NA	NA	NA
WP_003859623.1\|3518049_3518769_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_023303919.1\|3518932_3520471_-	flagellin	NA	NA	NA	NA
WP_023303920.1\|3520740_3522153_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_032619462.1\|3522183_3522594_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_006811148.1\|3522593_3522965_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_032619461.1\|3523063_3524551_+	alpha-amylase	NA	NA	NA	NA
WP_003859613.1\|3524653_3525067_-	lipoprotein	NA	NA	NA	NA
WP_032634723.1\|3525415_3526684_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.9e-228	91.0
WP_032634725.1\|3526683_3526989_-	hypothetical protein	I6PCW5	Cronobacter_phage	3.5e-15	41.7
WP_072031546.1\|3527417_3528407_+	acyltransferase	Q6QI96	Burkholderia_phage	2.1e-08	26.3
WP_032634728.1\|3528439_3530614_-	hypothetical protein	B1GS50	Salmonella_phage	9.2e-57	63.6
WP_032634730.1\|3530672_3533150_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	93.2
WP_032619452.1\|3533136_3533502_-	C40 family peptidase	F1C5F2	Cronobacter_phage	2.1e-62	89.9
WP_032634732.1\|3533515_3533986_-	hypothetical protein	F1C5F1	Cronobacter_phage	8.0e-75	87.8
WP_032634734.1\|3533985_3534483_-	hypothetical protein	F1C5F0	Cronobacter_phage	3.9e-88	89.7
WP_032634736.1\|3534482_3538004_-	tape measure protein	R9TMK1	Aeromonas_phage	1.0e-230	55.9
WP_032634738.1\|3538062_3538746_-	hypothetical protein	F1C5E8	Cronobacter_phage	3.0e-78	60.6
WP_032634739.1\|3538805_3539549_-	DNA breaking-rejoining protein	F1C5E5	Cronobacter_phage	5.0e-71	81.6
3538977:3538993	attL	NA	NA	NA	NA
WP_050596971.1\|3539614_3540166_-	hypothetical protein	G0ZNE5	Cronobacter_phage	4.4e-48	53.6
WP_032634741.1\|3540265_3540649_-	hypothetical protein	F1C5E4	Cronobacter_phage	1.0e-40	64.6
WP_032634743.1\|3540645_3541014_-	hypothetical protein	F1C5E3	Cronobacter_phage	7.2e-39	64.8
WP_023330659.1\|3541016_3541373_-	hypothetical protein	G0ZNE2	Cronobacter_phage	7.2e-28	57.3
WP_006820518.1\|3541372_3541546_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	7.8e-12	49.1
WP_032634744.1\|3541545_3541926_-	hypothetical protein	F1C5E2	Cronobacter_phage	2.0e-28	53.7
WP_032634746.1\|3541928_3542294_-	hypothetical protein	NA	NA	NA	NA
WP_032634748.1\|3542303_3543401_-	hypothetical protein	F1C5E1	Cronobacter_phage	1.0e-160	77.5
WP_006808955.1\|3543411_3543846_-	hypothetical protein	F1C5E0	Cronobacter_phage	6.9e-49	71.5
WP_032634750.1\|3543849_3545253_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	5.6e-124	51.0
WP_165824840.1\|3545319_3545904_-	HNH endonuclease	M4Q138	Vibrio_phage	1.1e-33	43.0
WP_082194859.1\|3546110_3547094_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.0e-103	64.4
WP_032634753.1\|3547047_3548508_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	4.7e-198	74.4
WP_032634755.1\|3548519_3549995_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.0e-229	77.0
WP_032634757.1\|3550004_3550454_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.5e-54	82.9
WP_032634759.1\|3550486_3551125_-	hypothetical protein	I6S676	Salmonella_phage	1.3e-115	92.9
WP_032634761.1\|3551128_3551332_-	hypothetical protein	NA	NA	NA	NA
WP_032634763.1\|3551508_3552054_-	KilA-N domain-containing protein	A0A1V0E5P7	Salmonella_phage	3.0e-57	66.1
WP_032634765.1\|3552405_3552867_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	2.4e-55	75.2
WP_032634767.1\|3552863_3553358_-	lysozyme	M9P0E5	Enterobacteria_phage	7.1e-90	97.6
WP_001752682.1\|3553335_3553560_-\|lysis	lysis S family protein	M9NZI9	Enterobacteria_phage	6.8e-32	91.9
WP_032634769.1\|3553851_3554352_-	antiterminator	G8C7V7	Escherichia_phage	9.3e-90	96.3
WP_032634771.1\|3554464_3555109_-	bacteriophage Lambda NinG protein	S4TSR3	Salmonella_phage	9.6e-79	71.0
WP_032634772.1\|3555101_3555272_-	NinE family protein	K7P7K0	Enterobacteria_phage	5.9e-20	89.3
WP_032634774.1\|3555271_3555727_-	hypothetical protein	I6PD71	Cronobacter_phage	7.0e-60	66.2
WP_032634776.1\|3555938_3556193_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	4.2e-06	42.1
WP_032634778.1\|3556192_3556393_-	hypothetical protein	NA	NA	NA	NA
WP_050597123.1\|3556385_3557312_-	DUF551 domain-containing protein	K7P7E4	Enterobacteria_phage	7.2e-19	31.4
WP_023296419.1\|3557308_3557719_-	ead/Ea22-like family protein	K7P6V8	Enterobacteria_phage	4.7e-31	88.6
WP_032634780.1\|3557715_3557973_-	DUF4752 family protein	T1S9K2	Salmonella_phage	3.3e-38	91.8
WP_032634782.1\|3558391_3558688_-	hypothetical protein	M1FPD5	Enterobacteria_phage	8.7e-19	53.6
WP_032634783.1\|3558687_3560121_-	AAA family ATPase	Q716D2	Shigella_phage	9.8e-233	87.5
WP_032634785.1\|3560110_3561010_-	hypothetical protein	Q37929	Escherichia_phage	3.5e-79	53.8
WP_015571544.1\|3561002_3561149_-	hypothetical protein	NA	NA	NA	NA
WP_001514165.1\|3561238_3561805_-	hypothetical protein	NA	NA	NA	NA
WP_000608751.1\|3561835_3562057_-	helix-turn-helix domain-containing protein	M9NZA8	Enterobacteria_phage	3.5e-33	100.0
WP_032634894.1\|3562174_3562885_+	helix-turn-helix transcriptional regulator	M9NZE3	Enterobacteria_phage	6.5e-129	95.8
WP_032634788.1\|3562959_3563340_+	hypothetical protein	NA	NA	NA	NA
WP_032634790.1\|3563381_3563591_-	hypothetical protein	G8C7T7	Escherichia_phage	2.5e-20	81.2
WP_133259049.1\|3564185_3564824_+	hypothetical protein	NA	NA	NA	NA
WP_032634793.1\|3564973_3565222_+	hypothetical protein	NA	NA	NA	NA
WP_032634795.1\|3565218_3565377_+	hypothetical protein	G8C7T3	Escherichia_phage	1.2e-19	88.5
WP_001752704.1\|3565373_3565580_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	3.6e-32	100.0
WP_032634797.1\|3565656_3566694_+	hypothetical protein	A0A077KCC0	Edwardsiella_phage	2.0e-38	75.4
WP_032634799.1\|3566701_3566986_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.4e-45	89.4
WP_032634801.1\|3567004_3567850_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	5.3e-69	56.9
WP_032634803.1\|3567846_3568527_+	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	1.2e-127	95.1
WP_032634805.1\|3568523_3568952_+	hypothetical protein	M9NYX4	Enterobacteria_phage	2.2e-71	94.4
WP_032634807.1\|3568948_3569101_+	DUF1317 family protein	T1SAR0	Salmonella_phage	9.6e-06	46.2
WP_032634809.1\|3569097_3569757_+	DNA methyltransferase	G8C7S6	Escherichia_phage	5.0e-123	93.2
WP_023300422.1\|3569753_3569972_+	hypothetical protein	NA	NA	NA	NA
WP_032619395.1\|3569968_3570580_+	hypothetical protein	NA	NA	NA	NA
WP_032619394.1\|3570576_3570768_+	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	1.3e-12	61.0
WP_032634811.1\|3570859_3571075_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	5.0e-16	62.9
WP_050597124.1\|3571074_3571530_+	hypothetical protein	A0A2D2W6E9	Pectobacterium_phage	2.9e-37	52.9
WP_032634813.1\|3571492_3571732_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.9e-12	50.0
WP_032634815.1\|3571741_3572068_+	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	5.0e-44	81.9
WP_032634816.1\|3572173_3572419_+	excisionase family protein	S4TND0	Salmonella_phage	3.6e-26	61.2
WP_032634818.1\|3572464_3573760_+\|integrase	site-specific integrase	Q20GI2	Phage_258-320	3.9e-180	68.9
3579235:3579251	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3657195 : 3668008

Bodo_saltans_virus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017693103.1\|3657195_3657807_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	1.6e-14	29.3
WP_032619360.1\|3657846_3658827_-	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_032634833.1\|3659021_3660026_+	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	4.3e-33	29.0
WP_032619358.1\|3660075_3661242_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	7.0e-112	54.0
WP_017693099.1\|3661480_3662362_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.0e-104	62.7
WP_032619357.1\|3662362_3663448_-	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	8.2e-99	52.6
WP_032619355.1\|3663537_3664944_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.5
WP_032634835.1\|3665109_3666480_-	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	2.0e-33	27.7
WP_032619353.1\|3666589_3668008_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	8.9e-61	32.1

DBSCAN-SWA_13

3927985 : 3991134

Enterobacterial_phage(28.3%)

head,portal,integrase,terminase,holin,capsid,protease,tRNA,tail

attL 3922333:3922347|attR 3990512:3990526

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3922333:3922347	attL	NA	NA	NA	NA
WP_023295093.1\|3927985_3928798_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_023304157.1\|3928797_3929811_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_017692991.1\|3929877_3931014_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	2.3e-19	27.3
WP_023304159.1\|3931125_3932130_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_032619305.1\|3932215_3933394_-	MFS transporter	NA	NA	NA	NA
WP_017383449.1\|3933461_3934679_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_023304161.1\|3934837_3936835_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_017383451.1\|3936893_3937172_-	YfcL family protein	NA	NA	NA	NA
WP_023304162.1\|3937185_3937731_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_003861386.1\|3937730_3938540_-	TSUP family transporter	NA	NA	NA	NA
WP_015572248.1\|3938539_3939364_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_023304163.1\|3939366_3940452_-	chorismate synthase	A0A291AU41	Pandoravirus	8.5e-88	46.9
WP_023304164.1\|3940512_3941445_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_015572246.1\|3941590_3942142_+	endonuclease SmrB	NA	NA	NA	NA
WP_003861375.1\|3942188_3942674_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_032634868.1\|3942883_3945031_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_023304166.1\|3945030_3946341_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_017692981.1\|3946569_3946854_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_017383456.1\|3947226_3948510_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_003861365.1\|3948552_3949305_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_015572241.1\|3949619_3950549_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	4.1e-139	83.6
WP_032634870.1\|3950810_3951077_+	DinI family protein	K7PKR6	Enterobacteria_phage	6.8e-39	93.2
WP_032634872.1\|3951118_3952417_-	hypothetical protein	G8C7K5	Escherichia_phage	2.7e-149	66.0
WP_032634343.1\|3952475_3952709_-	hypothetical protein	E4WL42	Enterobacteria_phage	3.9e-30	78.9
WP_032634342.1\|3952816_3953488_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	5.8e-87	73.1
WP_032634448.1\|3953488_3953803_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.8e-34	67.6
WP_111978132.1\|3953847_3957408_-\|tail	phage tail protein	Q9MCU0	Escherichia_phage	0.0e+00	70.6
WP_006809148.1\|3957460_3958048_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	3.6e-48	47.9
WP_023296258.1\|3958047_3958758_-	C40 family peptidase	F1C573	Cronobacter_phage	1.3e-97	70.2
WP_006809150.1\|3958760_3959519_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	1.0e-95	64.0
WP_006809151.1\|3959515_3959854_-\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	4.3e-38	59.8
WP_111978130.1\|3959856_3963348_-\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	0.0e+00	86.8
WP_032634878.1\|3963394_3963730_-	membrane protein	S4TR42	Salmonella_phage	3.0e-52	94.6
WP_006809154.1\|3963785_3964064_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.2e-43	97.8
WP_001549114.1\|3964072_3964456_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
WP_032634444.1\|3964464_3964908_-	hypothetical protein	K7PHL2	Enterobacterial_phage	7.8e-72	93.8
WP_022648886.1\|3964967_3965315_-	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	3.8e-58	99.1
WP_032634447.1\|3965311_3965761_-	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	1.1e-73	98.0
WP_022648888.1\|3965757_3966096_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.0e-40	73.2
WP_032619860.1\|3966104_3966431_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	3.4e-48	82.4
WP_023296252.1\|3966473_3967685_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	9.5e-197	87.9
WP_032619863.1\|3967694_3968543_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	9.2e-138	91.8
WP_032619865.1\|3968556_3969861_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.6e-234	93.5
WP_032619866.1\|3969860_3971618_-\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	96.6
WP_032619868.1\|3971617_3972091_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	2.9e-85	98.1
WP_032619870.1\|3972248_3972599_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.2e-51	81.9
WP_032619873.1\|3972598_3973189_-	hypothetical protein	K7PGW6	Enterobacterial_phage	9.3e-89	77.6
WP_032619877.1\|3973170_3974628_-	glycosyl transferase	K7PKP3	Enterobacterial_phage	2.0e-278	93.2
WP_032619880.1\|3974714_3974975_+	hypothetical protein	A0A089FW14	Salmonella_phage	2.5e-09	40.2
WP_047715785.1\|3975223_3975418_-	hypothetical protein	K7PM01	Enterobacterial_phage	1.3e-18	95.5
WP_032619884.1\|3975368_3975644_-	hypothetical protein	K7PGW4	Enterobacterial_phage	9.3e-07	96.0
WP_032619887.1\|3975640_3976183_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	2.3e-78	73.2
WP_000220248.1\|3976179_3976461_-\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	3.0e-05	35.9
WP_032264642.1\|3976457_3976862_-	exported phage-related protein	NA	NA	NA	NA
WP_032619892.1\|3977089_3977893_+	hypothetical protein	NA	NA	NA	NA
WP_032619895.1\|3977929_3978292_-	DUF1133 family protein	K7PGW2	Enterobacterial_phage	3.4e-57	90.8
WP_032619897.1\|3978306_3979296_-	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	4.2e-182	92.1
WP_050595702.1\|3979292_3980018_-	antirepressor	G0ZND1	Cronobacter_phage	1.1e-54	52.7
WP_032619898.1\|3980033_3980423_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	2.9e-62	88.9
WP_032619899.1\|3980419_3980743_-	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	4.1e-46	90.4
WP_032619900.1\|3980739_3981399_-	DNA methyltransferase	I6PDF5	Cronobacter_phage	2.3e-96	77.9
WP_032619901.1\|3981398_3981893_-	hypothetical protein	NA	NA	NA	NA
WP_032634002.1\|3981889_3982768_-	GntR family transcriptional regulator	U5P0A0	Shigella_phage	1.7e-38	81.4
WP_032619902.1\|3982757_3982937_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.3e-13	69.2
WP_023315870.1\|3983100_3983655_-	hypothetical protein	S5FXP0	Shigella_phage	1.6e-45	53.6
WP_071842884.1\|3983683_3983935_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	7.9e-13	49.3
WP_032619903.1\|3983969_3984722_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.5e-80	70.1
WP_032619905.1\|3984769_3985204_+	hypothetical protein	NA	NA	NA	NA
WP_032620359.1\|3985303_3985513_+	hypothetical protein	C6ZR45	Salmonella_phage	6.6e-13	60.9
WP_032103842.1\|3985540_3985750_-	hypothetical protein	G8C7T7	Escherichia_phage	3.0e-18	75.0
WP_032620361.1\|3986469_3986883_+	hypothetical protein	K7PJS4	Enterobacterial_phage	5.2e-54	83.2
WP_032619906.1\|3986882_3987710_+	hypothetical protein	K7PKM7	Enterobacterial_phage	1.5e-121	85.6
WP_032620364.1\|3988307_3988652_+	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	2.7e-40	74.3
WP_032619908.1\|3988731_3989001_+	hypothetical protein	K7PKM4	Enterobacterial_phage	1.5e-30	74.2
WP_022650818.1\|3989033_3989297_+	hypothetical protein	NA	NA	NA	NA
WP_032619909.1\|3989271_3990414_+\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	1.4e-93	49.0
WP_015570783.1\|3990633_3991134_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
3990512:3990526	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP030345

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6742 : 52221

Escherichia_phage(26.32%)

protease,integrase,transposase

attL 4462:4475|attR 49826:49839

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4462:4475	attL	NA	NA	NA	NA
WP_025760373.1\|6742_7453_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	2.2e-15	42.5
WP_032635065.1\|7611_7866_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	1.5e-11	48.8
WP_000143805.1\|7855_8146_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.0e-24	61.1
WP_001067858.1\|8318_9023_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_004896925.1\|9907_10450_+	hypothetical protein	NA	NA	NA	NA
WP_000155092.1\|10808_11693_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000052512.1\|11748_13224_-	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_002001451.1\|13622_14807_-\|transposase	IS4-like element ISEc29 family transposase	A0A0F7LAS3	uncultured_marine_virus	4.5e-50	35.4
WP_002026779.1\|14855_15041_+	hypothetical protein	NA	NA	NA	NA
WP_077252464.1\|15260_15542_+	hypothetical protein	NA	NA	NA	NA
WP_000359986.1\|15522_16296_-	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
WP_000050481.1\|17694_19236_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|19640_20480_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|20473_20821_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_004201164.1\|21038_21851_+	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
WP_004201167.1\|21854_22220_+	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
WP_004201168.1\|22224_22863_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_000050481.1\|23778_25320_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|25724_26564_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|26557_26905_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206356.1\|27068_27860_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_071523897.1\|27865_28111_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|28267_28765_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845039.1\|28909_29923_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|30038_30743_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000557454.1\|30975_31836_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_000587837.1\|31848_32391_+	AAA family ATPase	NA	NA	NA	NA
WP_000951934.1\|32872_33064_-	hypothetical protein	NA	NA	NA	NA
WP_000248278.1\|33087_33315_+	hypothetical protein	NA	NA	NA	NA
WP_000080861.1\|33365_34502_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_014342212.1\|34468_34618_-	hypothetical protein	NA	NA	NA	NA
WP_000971921.1\|34616_35987_+\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
WP_014342213.1\|36128_36254_-	hypothetical protein	NA	NA	NA	NA
WP_000027057.1\|36807_37668_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_160458683.1\|38805_38931_-	hypothetical protein	NA	NA	NA	NA
WP_160458682.1\|38923_40411_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.1e-32	35.5
WP_000776034.1\|40816_41248_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_004118291.1\|41247_42519_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.9e-151	63.3
WP_000064120.1\|42600_43575_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
WP_000368714.1\|43574_44780_-	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_111978107.1\|45194_45464_+	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|45819_46686_-	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_032409716.1\|47220_47325_+	hypothetical protein	NA	NA	NA	NA
WP_000764642.1\|47453_47711_+	hypothetical protein	NA	NA	NA	NA
WP_049245386.1\|47768_48545_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
WP_023280892.1\|48547_49231_-	hypothetical protein	NA	NA	NA	NA
WP_016946795.1\|49388_49694_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_004197642.1\|49695_49914_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
49826:49839	attR	NA	NA	NA	NA
WP_009654315.1\|50482_51064_+	hypothetical protein	NA	NA	NA	NA
WP_032635019.1\|51219_52221_+\|protease	CAAX amino protease	NA	NA	NA	NA

DBSCAN-SWA_2

62091 : 106761

Escherichia_phage(27.78%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032635071.1\|62091_63087_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.0e-19	28.3
WP_032635023.1\|63220_65359_+	AAA family ATPase	NA	NA	NA	NA
WP_032635024.1\|65355_67140_+	ATP-dependent helicase	A7KV33	Bacillus_phage	9.6e-20	26.8
WP_074173284.1\|67280_67577_-	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	2.9e-06	41.6
WP_001067855.1\|67629_68334_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001393253.1\|70655_70988_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_000239590.1\|71034_71910_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_072031555.1\|72165_72384_-	hypothetical protein	A0A1B0VDR3	Salmonella_phage	1.4e-18	100.0
WP_001067855.1\|72374_73079_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001334766.1\|73710_74541_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_063840321.1\|74671_75226_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001067855.1\|75369_76074_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012783960.1\|76064_77654_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.4e-293	100.0
WP_032635028.1\|78248_78500_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_020323529.1\|78733_78811_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_087758039.1\|78791_79667_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_154816811.1\|80525_80672_-	hypothetical protein	NA	NA	NA	NA
WP_032072916.1\|80810_81659_+	hypothetical protein	NA	NA	NA	NA
WP_032072917.1\|81718_82003_+	hypothetical protein	NA	NA	NA	NA
WP_032072918.1\|82091_82385_+	hypothetical protein	NA	NA	NA	NA
WP_032635033.1\|82507_82990_+	hypothetical protein	NA	NA	NA	NA
WP_045265539.1\|83016_83598_+	DUF2913 family protein	NA	NA	NA	NA
WP_032635034.1\|84041_84599_-	hypothetical protein	NA	NA	NA	NA
WP_032635035.1\|84726_85599_-	DUF3644 domain-containing protein	NA	NA	NA	NA
WP_032635036.1\|85595_86246_-	recombinase family protein	A0A0A8WJD4	Clostridium_phage	3.1e-08	29.9
WP_074177407.1\|86653_88057_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	6.2e-107	51.6
WP_154816812.1\|88091_89306_-	restriction endonuclease	E5E3X4	Burkholderia_phage	4.7e-34	41.9
WP_032635040.1\|89655_90213_-	hypothetical protein	NA	NA	NA	NA
WP_032635041.1\|90215_90803_-	amidophosphoribosyltransferase	NA	NA	NA	NA
WP_032635042.1\|91036_92314_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_032635075.1\|92377_94375_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_032635043.1\|94664_95261_-	recombinase family protein	A0A219YA40	Aeromonas_phage	1.8e-23	37.2
WP_032635044.1\|96066_96666_+	DUF2913 family protein	NA	NA	NA	NA
WP_001067858.1\|96927_97632_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001067855.1\|99404_100109_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001217881.1\|101849_102407_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_063840280.1\|102640_103195_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_001206315.1\|103264_104053_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000722315.1\|104112_104937_+	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
WP_004099053.1\|105792_106761_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	5.1e-185	98.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP030350

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP030347

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP030345

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection