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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP030778 Escherichia albertii strain 05-3106 chromosome, complete genome 5 crisprs DEDDh,DinG,cas3,csa3 0 3 9 0
NZ_CP030779 Escherichia albertii strain 05-3106 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP030780 Escherichia albertii strain 05-3106 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP030778
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP030778_1 449221-449344 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP030778_2 1176544-1176691 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP030778_3 1386788-1386918 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP030778_4 3992552-3992694 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP030778_5 4341995-4342083 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_016160 Escherichia phage HK75, complete genome 28589-28631 0 1.0
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_019705 Enterobacteria phage mEpX2, complete genome 29043-29085 0 1.0
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 KY979108 Escherichia phage ECP1, complete genome 424-466 0 1.0
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_019719 Enterobacteria phage HK633, complete genome 31737-31779 0 1.0
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 JF974339 Enterobacteria phage IME10, complete genome 9720-9762 0 1.0
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_005344 Enterobacteria phage Sf6, complete genome 28407-28449 1 0.977
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_019715 Enterobacterial phage mEp234, complete genome 30405-30447 1 0.977
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_019711 Enterobacteria phage HK629, complete genome 37166-37208 1 0.977
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_019769 Enterobacteria phage HK542, complete genome 29172-29214 1 0.977
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_019768 Enterobacteria phage HK106, complete genome 32701-32743 1 0.977
NZ_CP030778_1 1.1|449264|38|NZ_CP030778|CRISPRCasFinder 449264-449301 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 3 0.921
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 MW013502 Salmonella virus L cI-40 13-am43, complete genome 31669-31711 5 0.884
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 NC_004348 Enterobacteria phage ST64T, complete genome 14871-14913 5 0.884
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 MW013503 Salmonella virus L cII-101, complete genome 31670-31712 5 0.884
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 AY052766 Salmonella typhimurium bacteriophage ST64T, complete genome 14871-14913 5 0.884
NZ_CP030778_5 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder 4342018-4342060 43 MF188997 Salmonella phage vB_SalP_PM43, complete genome 14766-14808 5 0.884
NZ_CP030778_2 2.1|1176572|32|NZ_CP030778|CRISPRCasFinder 1176572-1176603 32 MH533020 Acinetobacter phage ABPH49, complete genome 116253-116284 10 0.688

1. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 0, identity: 1.0

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
*******************************************

2. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 0, identity: 1.0

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
*******************************************

3. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 0, identity: 1.0

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
*******************************************

4. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 0, identity: 1.0

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
*******************************************

5. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 0, identity: 1.0

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
*******************************************

6. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_005344 (Enterobacteria phage Sf6, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
tttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
 ******************************************

7. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_019715 (Enterobacterial phage mEp234, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggatctcagcgga	Protospacer
******************************** **********

8. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcgtctctcagcgga	Protospacer
******************************* ***********

9. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_019769 (Enterobacteria phage HK542, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggtgcggctctcagcgga	Protospacer
***************************.***************

10. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_019768 (Enterobacteria phage HK106, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggatctcagcgga	Protospacer
******************************** **********

11. spacer 1.1|449264|38|NZ_CP030778|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaatatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******. ****************************

12. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 5, identity: 0.884

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gatgtccaacgcaaacaccagtaatgacgcggctcacagcaaa	Protospacer
* ************************.******** ****..*

13. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 5, identity: 0.884

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gatgtccaacgcaaacaccagtaatgacgcggctcacagcaaa	Protospacer
* ************************.******** ****..*

14. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 5, identity: 0.884

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gatgtccaacgcaaacaccagtaatgacgcggctcacagcaaa	Protospacer
* ************************.******** ****..*

15. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 5, identity: 0.884

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gatgtccaacgcaaacaccagtaatgacgcggctcacagcaaa	Protospacer
* ************************.******** ****..*

16. spacer 5.1|4342018|43|NZ_CP030778|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 5, identity: 0.884

gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	CRISPR spacer
gatgtccaacgcaaacaccagtaatgacgcggctcacagcaaa	Protospacer
* ************************.******** ****..*

17. spacer 2.1|1176572|32|NZ_CP030778|CRISPRCasFinder matches to MH533020 (Acinetobacter phage ABPH49, complete genome) position: , mismatch: 10, identity: 0.688

atcaccgcttgttccagcgttgcgaactcatc	CRISPR spacer
gcatctgcttgttccagcgtgtcgaactccca	Protospacer
..  *.**************  ******* . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 6503 : 13944 7 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_2 269258 : 331135 71 Enterobacteria_phage(47.37%) tRNA,tail,terminase,holin NA
DBSCAN-SWA_3 836226 : 937311 115 Escherichia_phage(39.29%) tRNA,tail,integrase,terminase,capsid,holin,lysis,portal,protease,head,transposase attL 873129:873143|attR 937423:937437
DBSCAN-SWA_4 1162025 : 1249060 92 Salmonella_phage(58.33%) tRNA,tail,plate,integrase,capsid,lysis,portal,protease,head attL 1215003:1215027|attR 1249135:1249159
DBSCAN-SWA_5 1784021 : 1840694 63 Enterobacteria_phage(33.9%) tail,integrase,terminase,capsid,lysis,portal,head,transposase attL 1786374:1786388|attR 1836824:1836838
DBSCAN-SWA_6 1911168 : 1970512 49 Escherichia_phage(22.22%) tRNA,plate,transposase,protease NA
DBSCAN-SWA_7 4052642 : 4061499 12 Enterobacteria_phage(87.5%) integrase NA
DBSCAN-SWA_8 4331696 : 4367325 54 Enterobacteria_phage(47.17%) terminase,lysis,portal,head,transposase NA
DBSCAN-SWA_9 4609014 : 4680929 84 Stx2-converting_phage(32.84%) tRNA,tail,terminase,capsid,holin,lysis,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP030779
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 40307 : 47515 8 Escherichia_phage(28.57%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP030780
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 44760 : 52930 17 Escherichia_phage(16.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage