CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP030861	Pseudomonas aeruginosa strain HS9 chromosome, complete genome	3 crisprs	PD-DExK,cas3,DEDDh,RT,csa3,DinG,WYL	0	2	8	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP030861_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030861_1

2194949-2195062

Orphan

Consensus_repeat	Method
TCATACCTTGCCCTCCAGTTCTTTGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030861_1

>merge|NZ_CP030861|1|2194949-2195062|CRISPRCasFinder
TCATACCTTGCCCTCCAGTTCTTTGGCCACGCTTCTGGATGGAGAGCCTGTTGAACGGGATACGGAGCGGGATACGCTGTGCTGGCTCATACCTTGCCCTCCAGTTCTTTGGCC

>NZ_CP030861|1|1|2194949-2195062|CRISPRCasFinder
TCATACCTTGCCCTCCAGTTCTTTGGCC	ACGCTTCTGGATGGAGAGCCTGTTGAACGGGATACGGAGCGGGATACGCTGTGCTGGC
TCATACCTTGCCCTCCAGTTCTTTGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030861.1\|WP_003118762.1\|2189157_2189769_+\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP030861.1\|WP_003084303.1\|2195942_2197097_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP030861.1\|WP_003112941.1\|2190355_2191408_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP030861.1\|WP_003084339.1\|2184587_2185280_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP030861.1\|WP_003084301.1\|2197151_2198249_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP030861.1\|WP_003084290.1\|2201322_2202681_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP030861.1\|WP_003084327.1\|2186044_2186599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_003112945.1\|2185284_2185779_-\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP030861.1\|WP_023114764.1\|2205384_2206446_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP030861.1\|WP_023114765.1\|2206506_2207172_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP030861.1\|WP_003112942.1\|2189873_2190377_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP030861.1\|WP_003111119.1\|2207334_2208213_+\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP030861.1\|WP_003112946.1\|2183745_2184516_+\|cystine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270430
NZ_CP030861.1\|WP_003118764.1\|2186620_2187319_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP030861.1\|WP_003084299.1\|2198667_2199771_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP030861.1\|WP_003112937.1\|2203752_2205129_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP030861.1\|WP_003084297.1\|2199886_2201257_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP030861.1\|WP_003112938.1\|2202721_2203474_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP030861.1\|WP_003118763.1\|2188139_2189159_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP030861.1\|WP_003084320.1\|2187367_2188120_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP030861.1\|WP_003118762.1\|2189157_2189769_+\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP030861.1\|WP_003084303.1\|2195942_2197097_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP030861.1\|WP_003112941.1\|2190355_2191408_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP030861.1\|WP_003084339.1\|2184587_2185280_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP030861.1\|WP_003084301.1\|2197151_2198249_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP030861.1\|WP_003084290.1\|2201322_2202681_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP030861.1\|WP_003112938.1\|2202721_2203474_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_CP030861.1\|WP_003112945.1\|2185284_2185779_-\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP030861.1\|WP_023114765.1\|2206506_2207172_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.47331e-08
NZ_CP030861.1\|WP_003111119.1\|2207334_2208213_+\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP030861.1\|WP_003112946.1\|2183745_2184516_+\|cystine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270430	cd13712, PBP2_FliY, Substrate binding domain of an Escherichia coli ABC transporter; the type 2 periplasmic binding protein fold. This group contains cystine binding domain FliY and its related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.13159e-122
NZ_CP030861.1\|WP_003118764.1\|2186620_2187319_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP030861.1\|WP_003084299.1\|2198667_2199771_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP030861.1\|WP_003112937.1\|2203752_2205129_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP030861.1\|WP_003084297.1\|2199886_2201257_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP030861.1\|WP_023114764.1\|2205384_2206446_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.45331e-164
NZ_CP030861.1\|WP_003118763.1\|2188139_2189159_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56

>NZ_CP030861.1|WP_003112941.1|2190355_2191408_-|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP030861.1|WP_003112942.1|2189873_2190377_+|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP030861.1|WP_003118762.1|2189157_2189769_+|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP030861.1|WP_003118763.1|2188139_2189159_-|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP030861.1|WP_003084320.1|2187367_2188120_+|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP030861.1|WP_003118764.1|2186620_2187319_-|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP030861.1|WP_003084327.1|2186044_2186599_+|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP030861.1|WP_003112945.1|2185284_2185779_-|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP030861.1|WP_003084339.1|2184587_2185280_+|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR
>NZ_CP030861.1|WP_003112946.1|2183745_2184516_+|cystine-ABC-transporter-substrate-binding-protein
MRFLPRLLMLVSLAAPLAHAELLDDVHQRGALRIALEGTYPPFNFKQGGKLTGFETELGELLAAELAVKPEFVTTEWSGILAGLQSGKYDIALNQVSVNEQRRKVFDFSEPYTISSAQLIVRADETRQFKSLEDLKGLKLGVGQGTNYADLAKSVAGVNVRTYPGAPEYLQDLASKRIDAALNDRLLIPFAIREAKLPVKPGAAVGPVANMAIPYRKNNPKFGEALNAALEKIKADGRFAKLSEKWFGLDVSQPPK
>NZ_CP030861.1|WP_003084303.1|2195942_2197097_-|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP030861.1|WP_003084301.1|2197151_2198249_-|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP030861.1|WP_003084299.1|2198667_2199771_-|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP030861.1|WP_003084297.1|2199886_2201257_-|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP030861.1|WP_003084290.1|2201322_2202681_-|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP030861.1|WP_003112938.1|2202721_2203474_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP030861.1|WP_003112937.1|2203752_2205129_+|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP030861.1|WP_023114764.1|2205384_2206446_+|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAIPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLARTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP030861.1|WP_023114765.1|2206506_2207172_+|TetR/AcrR-family-transcriptional-regulator
MQPTSSTRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVEHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLTGFISDLNR
>NZ_CP030861.1|WP_003111119.1|2207334_2208213_+|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES

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Crispr_ID: NZ_CP030861_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030861_2

2492537-2492680

Orphan

Consensus_repeat	Method
GACACCAGGCCGCCGCCGCGGTTGTCCAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP030861_2

>merge|NZ_CP030861|2|2492537-2492680|PILER-CR
GCCGCCGTCGCGGTTGTCGAAGGCGCCTCCCGTGGCGCTCAGGCCGGCGTCGGCCACCAGCACGCCGCCACGGTTGTCCAGGCTGGCGCCGTGGACGTTCAACTCGCTGCGGCTCGACAGCAGGCCGCCGGCGCGGTTGTCCAG

>NZ_CP030861|2|1|2492537-2492680|PILER-CR
GCCGCCGTCGCGGTTGTCGAAGGCGCCTC	CCGTGGCGCTCAGGCCGGCGTCGGCCACCAGCAC
GCCGCCACGGTTGTCCAGGCTGGCGCCGT	GGACGTTCAACTCGCTGCGGCTCGACAGCAGGCC
GCCGGCGCGGTTGTCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030861.1\|WP_010792427.1\|2501852_2502752_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188320
NZ_CP030861.1\|WP_003083536.1\|2474724_2475120_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_123809523.1\|2482127_2482334_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_023114804.1\|2497301_2498189_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176171
NZ_CP030861.1\|WP_003111192.1\|2500489_2501113_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP030861.1\|WP_003097340.1\|2498292_2499501_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP030861.1\|WP_088136366.1\|2476011_2476257_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_003114635.1\|2501464_2501842_-\|DOPA-4,5-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|378079
NZ_CP030861.1\|WP_063896703.1\|2475694_2476015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_016263998.1\|2494589_2496278_-\|two-partner-secretion-system-transporter-TpsB2	unknown	unknown	gnl\|CDD\|225387
NZ_CP030861.1\|WP_023114805.1\|2501120_2501486_+\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|225108
NZ_CP030861.1\|WP_034059389.1\|2477155_2477476_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_077488357.1\|2476724_2477111_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373986
NZ_CP030861.1\|WP_023874766.1\|2482558_2483071_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_003115801.1\|2499497_2500304_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP030861.1\|WP_010792422.1\|2476443_2476725_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379730
NZ_CP030861.1\|WP_003097345.1\|2496985_2497201_-\|dodecin-family-protein	unknown	unknown	gnl\|CDD\|225896
NZ_CP030861.1\|WP_003097347.1\|2496574_2496802_-\|DUF1161-domain-containing-protein	unknown	unknown	gnl\|CDD\|369019
NZ_CP030861.1\|WP_124033869.1\|2478439_2478685_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_023114799.1\|2477515_2478217_-\|transposase	unknown	unknown	gnl\|CDD\|224854

Protein	Function_ID	Function_description	E-value
NZ_CP030861.1\|WP_010792427.1\|2501852_2502752_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|188320	TIGR03418, chol_sulf_TF, putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.	5.43822e-163
NZ_CP030861.1\|WP_023114804.1\|2497301_2498189_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176171	cd08482, PBP2_TrpI, The C-terminal substrate binding domain of LysR-type transcriptional regulator TrpI, which is involved in control of tryptophan synthesis, contains type 2 periplasmic binding fold. TrpI and indoleglycerol phosphate (InGP), are required to activate transcription of the trpBA, the genes for tryptophan synthase. The trpBA is induced by the InGp substrate, rather than by tryptophan, but the exact mechanism of the activation event is not known. This substrate-binding domain of TrpI shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.23912e-98
NZ_CP030861.1\|WP_003111192.1\|2500489_2501113_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.04424e-66
NZ_CP030861.1\|WP_003097340.1\|2498292_2499501_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP030861.1\|WP_023114805.1\|2501120_2501486_+\|Hpt-domain-containing-protein	gnl\|CDD\|225108	COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms].	7.28386e-16
NZ_CP030861.1\|WP_016263998.1\|2494589_2496278_-\|two-partner-secretion-system-transporter-TpsB2	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.00906e-163
NZ_CP030861.1\|WP_077488357.1\|2476724_2477111_-\|hypothetical-protein	gnl\|CDD\|373986	pfam15644, Gln_amidase, Papain fold toxin 1, glutamine deamidase. A papain fold toxin domain found in bacterial polymorphic toxin systems. In these systems they might function either as a releasing peptidase or toxin. In Shigella flexneri, UniProtKB:Q8VSD5, this protein is expressed from a plasmid, and delivered into the host via the type III secretion system where it deamidates the glutamine residue at position 100 in ubiquitin-activating enzyme E2, UBC13, to a glutamic acid residue. Invasion of host cells by pathogens normally invokes an acute inflammatory response through activating the TRAF6-mediated signalling pathway. UBC13 helps to activate TRAF6. Thus deamidation of UBC13 results in the dampening of the inflammatory response. The key glutaminase deamidase activity is mediated by a cys-his-glu triad, present in all members of the family.	5.11284e-19
NZ_CP030861.1\|WP_003115801.1\|2499497_2500304_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	4.36771e-144
NZ_CP030861.1\|WP_010792422.1\|2476443_2476725_-\|hypothetical-protein	gnl\|CDD\|379730	pfam15567, Imm35, Immunity protein 35. A predicted immunity protein with an alpha+beta fold and a conserved tryptophan residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a protease domain such as Tox-PL1 and Ntox40. In some instances, it is also fused to a papain-like toxin, ADP-ribosyl glycohydrolase and a S8-like peptidase. Based on these associations the domain is likely to be a protease inhibitor.	4.1215e-19
NZ_CP030861.1\|WP_003114635.1\|2501464_2501842_-\|DOPA-4,5-dioxygenase-family-protein	gnl\|CDD\|378079	pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family. This family of proteins are related to a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.	3.80529e-51
NZ_CP030861.1\|WP_003097347.1\|2496574_2496802_-\|DUF1161-domain-containing-protein	gnl\|CDD\|369019	pfam06649, DUF1161, Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.	2.11491e-24
NZ_CP030861.1\|WP_003097345.1\|2496985_2497201_-\|dodecin-family-protein	gnl\|CDD\|225896	COG3360, COG3360, Uncharacterized conserved protein [Function unknown].	6.39458e-35
NZ_CP030861.1\|WP_023114799.1\|2477515_2478217_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.87395e-18

>NZ_CP030861.1|WP_023874766.1|2482558_2483071_-|hypothetical-protein
MSYLPIRVWTDFQSAVRLLSAEASPKEVLDLILNWIKRNRKFFLSGSFAVYGFEEFLGLSGEEMPVNFSNFSSSELENFKKFTFKYQAKDVDYIAQFLRDVIETLITVEVDKKCPNCNSEGMHVFIGKYNNLVAYQCNVCGHSQYSDGSKVEVGGLEFITERKLRDLKLI
>NZ_CP030861.1|WP_123809523.1|2482127_2482334_-|hypothetical-protein
MEAMIDDSIFEKIDNLIGRLSVSRSTVDENELCRVARVLPGDRELDVIERLKNKGDVFIFAALKIKGR
>NZ_CP030861.1|WP_124033869.1|2478439_2478685_-|hypothetical-protein
MKLNLVFEKVGDINSDYPYLCVYREGEREPFMEISVNQERKIEFVFYSRADNLSLSSEEFYEIYGRAEAFLPQALENEDSL
>NZ_CP030861.1|WP_023114799.1|2477515_2478217_-|transposase
MPRQRRVVLLNYPLYVVQREHNRQVVFAEDEDYQRYLSDLRDLKDAFGIKVYAFCLMTNHVHLLLAPGDSLSGLAQLMKTLAARTTRYRNRLEGRSGTLWESRYKSSVVQSDAYLLACCRYIELNPVRARMVDDVAAYPWSSYGLRADWLKEPNWLDMDPCFIELGQTAEERYRRYVTFMKEAIPAEELKLIREAVQRGQLTGNQRFVDEIERVAGVRIERRGQGRPRLELGK
>NZ_CP030861.1|WP_034059389.1|2477155_2477476_-|hypothetical-protein
MYYLMIWDRYLASIGRDGCLDKVEIPLDVANFFFRLDVEQYPILSSLSFDDYDMFSGAQIDSLVGELCSVASINPLISETVESMVDIMLKARALGKNILFDPFKVD
>NZ_CP030861.1|WP_077488357.1|2476724_2477111_-|hypothetical-protein
MKNVNPGYPEAGRTHNCVNCSIATDATLAGNPASALPINHTKGVPLSVLEKQFDSKFGPVTAPENIAQQMANSGNGARGIVFGSYGPGQPGHVFNVVNQNGVVRFLDGQTGKPANLGDFKSLQLLRTN
>NZ_CP030861.1|WP_010792422.1|2476443_2476725_-|hypothetical-protein
MITYACALKKAKEHLMDSEVPLQITYEGEFSEGWYFCYQSKEFMETGNLSAQLAGNAPFLIDRQSGELHILGTAKPLESYLDDYIKNKSVKLG
>NZ_CP030861.1|WP_088136366.1|2476011_2476257_-|hypothetical-protein
MSDFDIALAGPELLQRAQPLGIGLRSGGTRTGPLSGRDLQALGLKDLARKLSAQAGREVNFMIYDSAATAASRAPSLVLPK
>NZ_CP030861.1|WP_063896703.1|2475694_2476015_-|hypothetical-protein
MIAYDLYGTKNLSLLLAREHIEKIFGVPLDERNSSYQGGDYYMLGSNDSENFILKANLDPLDDEPVELNFPDYPILLYINATTRSSAIEGVIKKGACFKLLRHEMF
>NZ_CP030861.1|WP_003083536.1|2474724_2475120_-|hypothetical-protein
MPVLALRLTALAALAISVSGCVMEAYGSRARSDAQSWIGLPIQDVIKRFGEPERVTGDAARQKYVWKEYENYSHDYDYTYYEQGHGNTPNSSVLNQKTGTANQSGYYTCIYEFFADASGRVVDATARGECR
>NZ_CP030861.1|WP_016263998.1|2494589_2496278_-|two-partner-secretion-system-transporter-TpsB2
MALHRLAFIFLCLPLMASAAPFTSPGDRDLIRDRQQRLLDEQRKRLEELQQLPGKGAPAAADASGDDERCFEIRRIELEGAGHLGESARRQLLAPYQGRCLGVGQLNALLKAVTDHYLDRGYVTTRAYLPQQDLASGTLRIIVVEGRLEGLDSSALASPRELAMSFPGRTGELLDLRELEQLVDQLSRLPSRQAQLELVPGSEVGGSRVRLKGERDKPWRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQLNLRANRDAVTDRWRHSDSQSLFYSLPWGWWTFTYGYSQSDYRTRNEASGFPFKLDGDSRSHQFRAERVLHRDGVSKTAMSLGLSHQRTNNYVEDTRLEDQSTRITETQLGFNHGRRIGSGFVNLDLGWQQGIGALGAQGRGHPQAGDPNARYDKYSLTLSYLQPFQLWGERFSFDSLATGQRSEDVLFSPQRISLGGNSSVRGFKDQTLTGDSGGYWRNQLRWRRAVEWAPLRPWLQEYGVAFAYDVGVIRHDRYNDGASGRMSGNAIELDARGRYFAASVGFARSLERPSAIERREHPIYFRVDAFF
>NZ_CP030861.1|WP_003097347.1|2496574_2496802_-|DUF1161-domain-containing-protein
MFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKANGVPAYTLEIVDKGSVTDKKVVGTCDGGTKEIVYQRG
>NZ_CP030861.1|WP_003097345.1|2496985_2497201_-|dodecin-family-protein
MSNHHTYKKIELVGSSKTSIEDAINNALAEAAKSIQHLEWFEVVDTRGHIENGAVGHYQVTLKVGFRIANS
>NZ_CP030861.1|WP_023114804.1|2497301_2498189_-|LysR-family-transcriptional-regulator
MSRDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLLEDDLGVALFGKDGRGVKLTDSGVRLRDACGDAFERLRGVCAELRRQTAEAPFVLGVPGSLLARWFIPRLDQLNRALPDLRLQLSTSEGEFDPRRPGLDAMLWFAEPPWPADMQVFELAPERMGPVVSPRLAQETGLAQAPAARLLQELLLHTASRPQAWPAWAASQGLAAEALHYGQGFEHLYYLLEAAVAGLGVAIAPEPLVRDDLAAGRLAAPWGFIETDARLALWVPARLHDPRAGRLAQWLREQLAG
>NZ_CP030861.1|WP_003097340.1|2498292_2499501_+|tryptophan-synthase-subunit-beta
MTSYRNGPDAKGLFGRFGGQYVAETLMPLILDLAREYEKAKDDPAFQEELAYFQRDYVGRPSPLYFAERLTEHCGGAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIDRQQANVFRMKLLGAEVIPVTAGTGTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQLAEKEGRLPDSLVACIGGGSNAMGLFHPFLDDAGVQIVGVEAAGHGIDTGKHAASLNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDTGRVEYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHHMQQESKA
>NZ_CP030861.1|WP_003115801.1|2499497_2500304_+|tryptophan-synthase-subunit-alpha
MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARLADGVVVGSALIDRIAKARDNAQAVKDVLALCGELAEGVRNAR
>NZ_CP030861.1|WP_003111192.1|2500489_2501113_+|response-regulator-transcription-factor
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI
>NZ_CP030861.1|WP_023114805.1|2501120_2501486_+|Hpt-domain-containing-protein
MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRAQEREQTQELNALAHRLAGMASLIHAHAVERACHQLEIACGESSVRKLADAVDDLVTALGELQCELHDWMTMTAPQGTAKS
>NZ_CP030861.1|WP_003114635.1|2501464_2501842_-|DOPA-4,5-dioxygenase-family-protein
MNEYSTPRIQGFHAHVYFDAQSIERARALCEEAARRFPLKMGRVHERPVGPHPDWSCQLAFAPEVFGELVPWLAIHRQDLVVFIHPVTGNDLLDHRDRAIWMGAIRPLDLSILDEGPQRYDFAVP
>NZ_CP030861.1|WP_010792427.1|2501852_2502752_-|LysR-family-transcriptional-regulator
MPPSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLTDAGQLLLRHVAAGLETIDAGIAALGARQRHEVLQVATDYAFAAYWLMPRLPRFHQAHPHLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHGEAHRLFREEVFPVCSPRLVEGLQLPLAKAHLARLPMLHLKPAQHARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQGVAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQAGGA

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP030861_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030861_3

3054326-3054423

Orphan

Consensus_repeat	Method
AAGGTGAAAGGATATGGGGCGTAGGTGAATGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030861_3

>merge|NZ_CP030861|3|3054326-3054423|CRISPRCasFinder
AAGGTGAAAGCTTATGGGGCGGAAGGTGAACGTCTATGGGGCGCTAAGGTGAAAGGATATGGGGCGTAGGTGAATGTTTATGGGGCAATGGTGAAAGA

>NZ_CP030861|3|2|3054326-3054423|CRISPRCasFinder
AAGGTGAAAGCTTATGGGGCGGAAGGTGAACG	TCTATGGGGCGCTAAGGTGAAAGGATATGGGGCG
TAGGTGAATGTTTATGGGGCAATGGTGAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030861.1\|WP_124074571.1\|3053875_3054097_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_023114934.1\|3060946_3061609_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_023114939.1\|3048214_3048904_-\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NZ_CP030861.1\|WP_124033778.1\|3057524_3057860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_003096163.1\|3044979_3045672_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226634
NZ_CP030861.1\|WP_031637489.1\|3053367_3053820_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_162794317.1\|3054722_3054944_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_023114937.1\|3055268_3057524_+\|DotA/TraY-family-protein	unknown	unknown	gnl\|CDD\|275142
NZ_CP030861.1\|WP_086009326.1\|3051680_3052819_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP030861.1\|WP_023114936.1\|3058127_3059174_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_154070651.1\|3062495_3064574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379062
NZ_CP030861.1\|WP_023114935.1\|3059725_3060928_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
NZ_CP030861.1\|WP_003096148.1\|3049062_3049800_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|379263
NZ_CP030861.1\|WP_023114931.1\|3064885_3066001_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP030861.1\|WP_003096156.1\|3046425_3047178_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270420
NZ_CP030861.1\|WP_124033779.1\|3054957_3055272_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030861.1\|WP_003096153.1\|3047192_3047966_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226961
NZ_CP030861.1\|WP_023114938.1\|3050307_3051654_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP030861.1\|WP_016562461.1\|3045668_3046364_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226670
NZ_CP030861.1\|WP_023114933.1\|3061751_3062144_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP030861.1\|WP_023114939.1\|3048214_3048904_-\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	1.05058e-69
NZ_CP030861.1\|WP_003096163.1\|3044979_3045672_-\|ABC-transporter-permease	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	1.02248e-101
NZ_CP030861.1\|WP_023114931.1\|3064885_3066001_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.2035e-50
NZ_CP030861.1\|WP_023114937.1\|3055268_3057524_+\|DotA/TraY-family-protein	gnl\|CDD\|275142	TIGR04346, DotA_TraY, conjugal transfer/type IV secretion protein DotA/TraY. Members of this protein family include transfer protein TraY of IncI1 plasmid R64 and DotA (defect in organelle trafficking A) of Legionella pneumophila.	2.35643e-123
NZ_CP030861.1\|WP_086009326.1\|3051680_3052819_-\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.02339e-34
NZ_CP030861.1\|WP_154070651.1\|3062495_3064574_-\|hypothetical-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.000128691
NZ_CP030861.1\|WP_023114935.1\|3059725_3060928_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	2.28977e-19
NZ_CP030861.1\|WP_003096148.1\|3049062_3049800_+\|SDR-family-oxidoreductase	gnl\|CDD\|379263	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.	1.42847e-57
NZ_CP030861.1\|WP_003096156.1\|3046425_3047178_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270420	cd13702, PBP2_mlr5654_like, Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold. This group includes uncharacterized periplasmic substrate-binding protein similar to HisJ and LAO proteins which serve as initial receptors in the ABC transport of histidine-, arginine, and lysine-arginine-ornithine amino acids. This group belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.07871e-130
NZ_CP030861.1\|WP_003096153.1\|3047192_3047966_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226961	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism].	1.34687e-173
NZ_CP030861.1\|WP_023114938.1\|3050307_3051654_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	5.37218e-11
NZ_CP030861.1\|WP_016562461.1\|3045668_3046364_-\|ABC-transporter-permease	gnl\|CDD\|226670	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism].	9.0077e-103

>NZ_CP030861.1|WP_124074571.1|3053875_3054097_-|hypothetical-protein
MAKKTIPDIVLDDALVAANPRLENPKAESELQALRKLLGPACEQVVKAYTAVADQKSAERAFKHFVQNLISAA
>NZ_CP030861.1|WP_031637489.1|3053367_3053820_+|hypothetical-protein
MGSWFKIYFSVAVKAFYEVAFVLLPVAVWMVVIFSVGGTREEIKSLVAWPFAGLALFGASLRDGISAFHQDTPFDKRQREIIIAGSLIGVVLCTVLMTLGVLKARGDLSYLFPAFREMVFILLLSGITLLLVVKAILAQRKDFGIYKGQL
>NZ_CP030861.1|WP_086009326.1|3051680_3052819_-|IS3-family-transposase
MKKRFTEEQILDFLKQAEAGVPVKELCRRHGFSDASFYTWRAKFGGMTVADAKRLKDLELENSRLKKLLAEAHLDIESLKVVAPGKRVSPTARREAVQEMQARTGISERRACQLIGLSRSVLRYQPRASVQNTELQAQLVELAQERRRFGYRRLHILLRRAGVQVNHKRIYRLYRAAGLMVKRRRRRHGVAVERERLSLPSAPNQVWSMDFVFDALSTGRRIKCLTVVDDFTKESVGILVEHGISGFRVTRALDEMARFRGYPKAIRTDQGPEFTGKALDQWAYQRDIKLKLIQPGKPTQNAFIESFNGKFRDECLNEHWFCSLAEARIRIAAWRRDYNEHRPHSAIGNLTPAEFAASWRTRQQQLKQEKLISTPGPTN
>NZ_CP030861.1|WP_023114938.1|3050307_3051654_+|pentapeptide-repeat-containing-protein
MLLIPSRGIQLPLVSVTVPVVGFYLLSPLIVLIGHLVTLRRIPMTFPKLLNTEPHARHEQLNVSTDYLMVICLLFAGPATLLLITCRFAAYQSPVVFLIQAAALVYACYATLVRFHEVLPEKVRTAQTPVKWACYLAGTVVGSWLLLCADVILIPAQYSATVWLKTHTALLDNEDEGTIAWIPHIHIDRADRLWSGVATTDADLAEHSGKVDAKELFMTRGVALDLRSRNLRFLDISQQVIPRVWAHDADLSGANLSFTRLYGSVFVGTKLNGASFDLAALDGSTFMHTTISNTTFRHARLKGSYWDNVVVNDSDFLQADLSLASLYGVKFNRVVMAGTDLTATSLFETEAADLAIGYVEPYKILTAVESDELMKETSPVLEVAPEAALAEIAKQICRPNIDSGWTYAWSNFLQIKSMVGASEPGVMSALQGLFKLERCKDLPDRGFE
>NZ_CP030861.1|WP_003096148.1|3049062_3049800_+|SDR-family-oxidoreductase
MAERKTLLLTGASRGIGHATVKYFNAAGWRVFTASRQSWASECPWADGEENHIHLDLEDIPGVEASLELIREKLGDGRLHALVDNAGISPKGEGGERLGVLETDYATWLRVFNVNLFSTALLARGLFAELKAAQGTVINVTSIAGSKVHPFAGVAYATSKAALSALTREMAHDFGPHGVRVNAIAPGEIDTSILSPGTEEIVERSIPLHRLGRPEEIASLIYFLCTSGASYVNGAEIHVNGGQHV
>NZ_CP030861.1|WP_023114939.1|3048214_3048904_-|DUF502-domain-containing-protein
MLKKSFNSLLTTWLAGLLVMLPLVLTLALLAWVVSLLNRFVGPSSLIGRGFAAIGQPLAGDSPLAYLLGTALLLVAIYLLGLGVQLGLKRPLANLFDLTLRRTPLIGNLYNLADRFVGLLDKKQDADIAAMSPVWCFFGGDGAAVLALMPNPEAVELDGRAHYAILVPTAPIPVGGGLLYVPVEWVKPAQIGMDTFTSIYVSMGITPPPPLAAAEVLAEPRAEQPPAAP
>NZ_CP030861.1|WP_003096153.1|3047192_3047966_-|ABC-transporter-ATP-binding-protein
MAEATPALEIRNLHKRYGDLEVLKGISLTARDGDVISILGSSGSGKSTFLRCINLLENPHQGQILVSGEELRLKKSKNGDLVAADSQQINRLRSELGFVFQNFNLWPHMSILDNVIEAPRRVLGKSKAEAIEIAEGLLAKVGIADKRHSYPAQLSGGQQQRAAIARTLAMQPKVILFDEPTSALDPEMVQEVLNVIRALAEEGRTMLLVTHEMSFARQVSSEVVFLHQGLVEEQGTPQQVFENPQSARCKQFMSSHR
>NZ_CP030861.1|WP_003096156.1|3046425_3047178_-|ABC-transporter-substrate-binding-protein
MKNYKKILLAAAATLAFALDASAADKLRIGTEGAYPPFNGIDASGQAVGFDLDIGKALCAKMKTECEVVTSDWDGIIPALNAKKFDFIVASMSITDERKQAVDFTDPYYTNKLQFVAPKSVDFKTDKDSLKGKVIGAQRATIAGTWLEDNMADVVTIKLYDTQENAYLDLSSGRLDGVLADKFVQYDWLKSDAGKEFEFKGEPVFDNDKIGIAVRKGDPLREKLNAALKEIVADGTYKKINDKYFPFSIY
>NZ_CP030861.1|WP_016562461.1|3045668_3046364_-|ABC-transporter-permease
MILDLHGFGEQLLAGTWMTLKLSLAAVCVGLLLGLLGAIAKTSKYAALRFLGGTYTTIVRGVPETLWVLMIYFGTVSGLNALGDLFGKPDLALSPFAAGTLALGLCFGAYATEVFRGALLSIPRGHREAGQALGLSPGRIFWRIVLPQIWRVALPGLGNLYLILLKDTALVSLITLDEIMRKAQVASNATKEPFTFYMTAAAIYLSLTVIIMVALHFLERRAGRGFVRNEL
>NZ_CP030861.1|WP_003096163.1|3044979_3045672_-|ABC-transporter-permease
MSEWELILKWMPKMLQGAALTLELLAIAVVAGLALALPLGIARASRHWYVRAVPYAYIFFFRGTPLLLQLFIVYYGLAQFEEVRKSAFWPYLRDPYWCALLTMTLHTAAYIAEILRGAIHSVPVGEVEAARALGMSRRQALWHIILPRAVRIGLPAYSNEVILMLKASAVVYTVTLFDIMGMARTIIARTYESMLFFCLAGALYLVITIVLTRIFRLIERWLRVDATQGR
>NZ_CP030861.1|WP_162794317.1|3054722_3054944_+|hypothetical-protein
MSAMPQQIQQKAKFEQDFLNRFGPLISQKQLAELLGMSVRGSARFSGVKLIWPKVFVNAGLKLVGECYIALLK
>NZ_CP030861.1|WP_124033779.1|3054957_3055272_+|hypothetical-protein
MPTVSFSIFLSSPGFTRFTHRVFYLLLLLTNLGLPLGQHRIWGGLPSWWVFPTIAVLTLYAVQQYLSGGSQFYALAGIPYALLYVHDAFSAPLVLPPAQRRAAR
>NZ_CP030861.1|WP_023114937.1|3055268_3057524_+|DotA/TraY-family-protein
MRKSLLLCLFLAAFLGGAAHADSSGGLNQFTPPPGDTSVDFLEEVFGSIVGTIHSGGNVEGGETEDVLGSMMSVFGGAVMFLGMIFIAYTTIKGTVDSAQDGEVLGRKMSDIWIPLRTAAGGALLLPLGHGYSLIQIMVLWLAIQGVGVGDAIWSQAVDQIGKDGMLSRPLIPDSRPLAANILKFEVCTAAMNKQFEASGRSTRIQAVASARKVVNTGEIDVDITDAIPVYGGINMVQKYNKASYTVTDYKWKANDNSYINPDVCGALTWKQSWEASEGNSNTKVIKEPILAAHAKAIQQMIQDIRPTAQQIVAGQKPAPGVIDAAANTYENSLRSAAKTAVMQTSDRAAADFLKAAKDGGWLFAGTWYNHIVKMNDVMQSTLNGLPAAEPIAIVDKETKETLQTYADVMLTTDEYAKHRVDSVRNTYYAETNVREPRDGEGAWEYVKKMMSAPFMGAINQMTQSIAGSNLNHMSQMKSFGDVIVTTGEVMLAAMASATGVANSWAAQATVKVGFDVGAVFQFLSTLITTLLILLFALGVTLSTYVPMIPFITWTTAIVNWFVLVLESVIAAPLFAVAHIHPDGDNAVGRAGQGYMMILSLVMRPALMLFGLLGGMLLTQPIVGYINAAFMSVVSGIQADSMTGIVSFIAYVAIYVVMMTTVVHIVFSLIHWVPDNILRWIGNGSTGGIADAERTGDSGQDVFVAGVRETKHGAAGGLGGGAKHSKGPDNSTPGRSMPDNNTLLGGPPPGG
>NZ_CP030861.1|WP_124033778.1|3057524_3057860_-|hypothetical-protein
MSSSGYQVGLSAGYAHSRATQASYESAIDQWRLHSEELKLQVNALNERIEIMQGHFEANNYVLLLLLEELRKTSPNSPLLAKENRDSLRQEAFDKYLEDRGYEWPSSRPRR
>NZ_CP030861.1|WP_023114936.1|3058127_3059174_+|hypothetical-protein
MKTQEEIFELVRTARQRMKELPSKRLTKSTDDGYVREYNRMVGDEGANPEKLWSAICATQSKSTYRRRVAATMHCCRAQLQEALRCQDAAQRVGDMSALRYQVAAIEEVIGILNIVERHKGQCPLENTVRRKSKRSDLKYLPGNWRDQLHKQLEGSKYELAFLAEAVSGCRPGELEKGVKVICSKESGLLTVRIDNGIKVTDEKGQPWREITYRVDQNPLVRALFENCRNAASGAEKIETVVDIEKTTNWRAALSSAGQKLWPRLKFRICPYHLRNAVASDWKRAGLSEEEISAALGHCVNKTSSNYGQFQIGQGAGGLSPVEVRAARPVLNTRTLSPQVNRVSLSPK
>NZ_CP030861.1|WP_023114935.1|3059725_3060928_-|ImmA/IrrE-family-metallo-endopeptidase
MRTGILGFQSERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLLEKPIKSGFLRPSFFRSQVTTPKISWDVADARLDWLEEISYKLQESLEFPPINIPAYNGNNVREISDEDIESLADECRKTWRLGDGPIQNVIQVLENFGAVTARCTLGFLKMDGVSRWSEVDNRPYVLIAGDKASPIRNRFDAAHELGHLVLHRGVGFDQARVDYHLLENQAHRFASAFLMPSESFPLEVKWPTLDGFLALKKRWKVSIAAMIKRCHDLNVVDDEAVVRLWKGRSARGWVKKEPLDEEFSFEQPKLISRSVKMIIENDILTKNQLKEILGVPSEKLEELCALEKGYFQSNDEQKIIDIRIRANSPRETHARSTSGVVLGFPKK
>NZ_CP030861.1|WP_023114934.1|3060946_3061609_-|hypothetical-protein
MNTQDEILSYLRKRIPRNHFEEIKNVVPVAFKKAHDAGSDLVHIPKDRKRAQDRYAYIQDGLAGLQKTWSSQVVPTNPKGEFYTLMNAENIRLTAAIKPWKKKLRPAKYRLNNSKLNRFLMSPQLELLGAGDITVDIENILNAIVIPLSPPWHLDQSKPLDIILAVPYFNSCSDYHVWCSLDKFIEGYEKEIAGDLDLAWPVIRKQMRRDEGLDESTGEE
>NZ_CP030861.1|WP_023114933.1|3061751_3062144_-|hypothetical-protein
MMEPVTSISSALITLVSAPLTQAAPETLIEVALFVWYDPNPLPSLKRTLEILEGIQQRRARFILDVIRRYPCIELERQQALCELADLKVSFQGGPLTDLLRAWGLDEADIPNTKAILPYQTRHYAAERRK
>NZ_CP030861.1|WP_154070651.1|3062495_3064574_-|hypothetical-protein
MGQIKSDVLSGVLARRPADRALLTPFLNGFDVTWGASHRSFGTDVTVYFLLPESFISQGFGIDQEIALFVTDFPTLEPRVLQAVDQTLREAPAKGRVEQSIFFLSSPADNGRQWMADYTAANPDSRLAVVFNSKSLVGAAGNAWYVRNQIGEQLFTRNLFDNQLPIDSDLFFFGRDQLVAGFLDAIKRSQNRGLFGLRKTGKTSVLYKIQRIVSRDGIGNVYYYDAKLPSIRSLKWHELLAKISRDIAQANGLSIPEGVDDPRRVSDALMHILRLTPSDKIAVLIFDEIEFISPVAKDDVHWHKEFIPFWQTLWAIQSQVRRLSNIVVGVNPKVVEMDTVDEVQNPMFGIIQPTYLKGFALDELKNMLKFFGKRMGIVFDADAQTYLLQRYGGHPLLVRMACSEVHKSLERAVVQRPATISASDLVKGEVQRDEELLFYCRHVVSELQRFYADEYKMLEMLASGQIADVRELSDEPEYTRHLREYGLLKFDTHNRPSFEIPVVGEYVGRELARREKRQLVRKIVSEGDRIDWVKRRTQTVSREIRTLAREIDKAGLPKLFGDGDFPEAERFSAILPATDVDTFVVFINICNRCFVESIERYGNKAGIKGYFWSSIKTTYPDLWHALQRIKVYRNNDLHLELNVTVEAELKRYLDIDLEGRTVSQVREPWFALQQAVLDELMLCIQYELARHS
>NZ_CP030861.1|WP_023114931.1|3064885_3066001_-|site-specific-integrase
MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNIDQSRQGSRPSA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP030861_3	3.1\|3054358\|34\|NZ_CP030861\|CRISPRCasFinder	3054358-3054391	34	NZ_CP032256	Pseudomonas aeruginosa strain AR_0111 plasmid unnamed, complete sequence	106417-106450	8	0.765
NZ_CP030861_3	3.1\|3054358\|34\|NZ_CP030861\|CRISPRCasFinder	3054358-3054391	34	NZ_CP034355	Pseudomonas aeruginosa strain IMP-13 plasmid pPYO_TB, complete sequence	10801-10834	8	0.765
NZ_CP030861_2	2.1\|2492566\|34\|NZ_CP030861\|PILER-CR	2492566-2492599	34	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	52141-52174	9	0.735
NZ_CP030861_2	2.1\|2492566\|34\|NZ_CP030861\|PILER-CR	2492566-2492599	34	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	145494-145527	9	0.735
NZ_CP030861_2	2.1\|2492566\|34\|NZ_CP030861\|PILER-CR	2492566-2492599	34	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1621724-1621757	10	0.706
NZ_CP030861_2	2.1\|2492566\|34\|NZ_CP030861\|PILER-CR	2492566-2492599	34	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1396885-1396918	10	0.706
NZ_CP030861_2	2.1\|2492566\|34\|NZ_CP030861\|PILER-CR	2492566-2492599	34	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1050121-1050154	10	0.706
NZ_CP030861_2	2.1\|2492566\|34\|NZ_CP030861\|PILER-CR	2492566-2492599	34	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1645606-1645639	10	0.706
NZ_CP030861_2	2.1\|2492566\|34\|NZ_CP030861\|PILER-CR	2492566-2492599	34	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1117586-1117619	10	0.706

1. spacer 3.1|3054358|34|NZ_CP030861|CRISPRCasFinder matches to NZ_CP032256 (Pseudomonas aeruginosa strain AR_0111 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

tctatggggcgctaaggtgaaaggatatggggcg	CRISPR spacer
ggcgtctgccgctaaggtgaaaggctatggggcg	Protospacer
  ..*  * *************** *********

2. spacer 3.1|3054358|34|NZ_CP030861|CRISPRCasFinder matches to NZ_CP034355 (Pseudomonas aeruginosa strain IMP-13 plasmid pPYO_TB, complete sequence) position: , mismatch: 8, identity: 0.765

tctatggggcgctaaggtgaaaggatatggggcg	CRISPR spacer
ggcgtctgccgctaaggtgaaaggctatggggcg	Protospacer
  ..*  * *************** *********

3. spacer 2.1|2492566|34|NZ_CP030861|PILER-CR matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

gaaggcgcctcccgtggcgctcaggccggcgtcg	CRISPR spacer
tcatgcggctcccgtgacgctcaggccggtcatg	Protospacer
  * *** ********.************.  .*

4. spacer 2.1|2492566|34|NZ_CP030861|PILER-CR matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 9, identity: 0.735

gaaggcgcctcccgtggcgctcaggccggcgtcg	CRISPR spacer
gtcgaccaggcccgtggccctcagcccggcgtcg	Protospacer
*  *.*    ******** ***** *********

5. spacer 2.1|2492566|34|NZ_CP030861|PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gaaggcgcctcccgtggcgctcaggccggcgtcg	CRISPR spacer
gcccaggcctccggtggcgcgcaggccggcctgt	Protospacer
*   . ****** ******* ********* *

6. spacer 2.1|2492566|34|NZ_CP030861|PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gaaggcgcctcccgtggcgctcaggccggcgtcg	CRISPR spacer
gcccaggcctccggtggcgcgcaggccggcctgt	Protospacer
*   . ****** ******* ********* *

7. spacer 2.1|2492566|34|NZ_CP030861|PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gaaggcgcctcccgtggcgctcaggccggcgtcg	CRISPR spacer
gcccaggcctccggtggcgcgcaggccggcctgt	Protospacer
*   . ****** ******* ********* *

8. spacer 2.1|2492566|34|NZ_CP030861|PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gaaggcgcctcccgtggcgctcaggccggcgtcg	CRISPR spacer
gcccaggcctccggtggcgcgcaggccggcctgt	Protospacer
*   . ****** ******* ********* *

9. spacer 2.1|2492566|34|NZ_CP030861|PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 10, identity: 0.706

gaaggcgcctcccgtggcgctcaggccggcgtcg	CRISPR spacer
gcccaggcctccggtggcgcgcaggccggcctgt	Protospacer
*   . ****** ******* ********* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

959232 : 1008767

Pseudomonas_phage(84.48%)

terminase,holin,lysis,portal,protease,integrase

attL 962212:962234|attR 1002718:1002740

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003092260.1\|959232_960273_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5
WP_003092262.1\|960406_960913_-	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092265.1\|961060_962068_+	TolB family protein	NA	NA	NA	NA
962212:962234	attL	NA	NA	NA	NA
WP_014602611.1\|962435_962708_-	hypothetical protein	A0A0U4JEI3	Pseudomonas_phage	2.6e-46	98.9
WP_023114581.1\|962795_963110_-	hypothetical protein	A0A0U4K5I1	Pseudomonas_phage	5.0e-49	88.5
WP_174235619.1\|963689_963977_-	hypothetical protein	A0A1W6JTD4	Pseudomonas_phage	4.7e-46	100.0
WP_023114582.1\|963970_964531_-	hypothetical protein	A0A1B0YZW5	Pseudomonas_phage	5.5e-99	98.4
WP_003159082.1\|964535_964727_-	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	3.5e-29	98.4
WP_023114583.1\|964719_965307_-	hypothetical protein	A0A0U4B0K9	Pseudomonas_phage	3.3e-102	94.9
WP_023114584.1\|965336_966995_-	hypothetical protein	A0A0U4IJ51	Pseudomonas_phage	0.0e+00	98.5
WP_021205047.1\|966991_967396_-	hypothetical protein	A0A0U4B0P9	Pseudomonas_phage	1.2e-66	99.3
WP_021205046.1\|967406_967952_-	hypothetical protein	A0A1B0YZV4	Pseudomonas_phage	1.2e-90	92.3
WP_023114585.1\|967951_968362_-	hypothetical protein	A0A1W6JT78	Pseudomonas_phage	1.2e-53	93.2
WP_023114586.1\|968364_970074_-	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	8.5e-300	88.9
WP_023114587.1\|970073_970595_-	hypothetical protein	A0A1W6JT98	Pseudomonas_phage	4.4e-98	99.4
WP_023114588.1\|970634_973118_-	tape measure protein	A0A1B0YZV6	Pseudomonas_phage	0.0e+00	98.5
WP_019396608.1\|973220_973523_-	hypothetical protein	A0A1W6JT80	Pseudomonas_phage	4.1e-48	100.0
WP_023114589.1\|973584_974226_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	A0A1W6JT76	Pseudomonas_phage	6.8e-109	93.9
WP_015980909.1\|974307_975060_-	hypothetical protein	A0A1B0YZT8	Pseudomonas_phage	2.4e-137	99.6
WP_023114590.1\|975061_975256_-	hypothetical protein	A0A1W6JT79	Pseudomonas_phage	5.7e-27	96.9
WP_023114591.1\|975259_975730_-	hypothetical protein	A0A1W6JT75	Pseudomonas_phage	9.1e-87	98.7
WP_023114592.1\|975726_976056_-	hypothetical protein	A0A1W6JT71	Pseudomonas_phage	1.5e-56	97.2
WP_023110592.1\|976052_976370_-	DUF2190 family protein	A0A1B0YZT7	Pseudomonas_phage	1.6e-50	100.0
WP_113774872.1\|976436_978530_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	0.0e+00	97.8
WP_019486499.1\|978489_980136_-\|portal	phage portal protein	A0A1W6JTB6	Pseudomonas_phage	0.0e+00	99.8
WP_003159069.1\|980135_980351_-	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	6.5e-32	100.0
WP_023114594.1\|980341_982321_-\|terminase	phage terminase large subunit family protein	A0A1W6JT68	Pseudomonas_phage	0.0e+00	99.1
WP_023114595.1\|982292_982838_-\|terminase	terminase small subunit	A0A1W6JT69	Pseudomonas_phage	3.1e-94	100.0
WP_023114596.1\|982957_983701_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	1.1e-134	99.2
WP_031637422.1\|983697_984168_-\|lysis	lysis protein	A0A1B0Z001	Pseudomonas_phage	3.1e-71	91.0
WP_023875728.1\|984164_984407_-	hypothetical protein	A0A0H5AWC3	Pseudomonas_phage	3.2e-19	51.9
WP_023114599.1\|984403_985021_-	glycoside hydrolase family 19 protein	A0A1W6JTC9	Pseudomonas_phage	1.9e-108	94.1
WP_003129668.1\|985017_985350_-\|holin	phage holin, lambda family	A0A1B0YZZ1	Pseudomonas_phage	5.1e-44	100.0
WP_014602588.1\|985619_985994_-	hypothetical protein	NA	NA	NA	NA
WP_023114600.1\|985995_986292_-	hypothetical protein	A0A1B0YZZ2	Pseudomonas_phage	1.2e-41	83.7
WP_021205616.1\|986288_986870_-	recombination protein NinG	A0A0U4KL68	Pseudomonas_phage	6.6e-103	95.3
WP_023114601.1\|986866_987073_-	hypothetical protein	A0A1B0YZY8	Pseudomonas_phage	6.9e-31	92.6
WP_023114602.1\|987069_987753_-	hypothetical protein	A0A1B0YZY6	Pseudomonas_phage	3.0e-123	97.8
WP_031637423.1\|987749_988505_-	helix-turn-helix domain-containing protein	A0A1B0YZZ0	Pseudomonas_phage	8.0e-77	80.2
WP_023114604.1\|988569_989274_-	phage antirepressor KilAC domain-containing protein	A0A1B0YZY9	Pseudomonas_phage	1.6e-124	97.9
WP_031637426.1\|989427_989640_-	hypothetical protein	NA	NA	NA	NA
WP_023114605.1\|989735_990455_+	helix-turn-helix transcriptional regulator	A0A1W6JTC8	Pseudomonas_phage	4.9e-39	55.7
WP_023114606.1\|990550_991645_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	3.2e-66	42.7
WP_023114607.1\|992187_992478_+	hypothetical protein	A0A125RNS4	Pseudomonas_phage	7.9e-41	92.0
WP_023114608.1\|992495_992789_+	hypothetical protein	NA	NA	NA	NA
WP_023114609.1\|993037_993736_+	hypothetical protein	A0A088FRV0	Escherichia_phage	1.0e-54	48.4
WP_124082060.1\|993701_994643_+	hypothetical protein	A0A1B0YZX8	Pseudomonas_phage	6.5e-60	46.9
WP_023114611.1\|994983_995367_+	helix-turn-helix transcriptional regulator	A0A0U4IIG4	Pseudomonas_phage	1.1e-61	95.3
WP_023114612.1\|995377_995626_+	hypothetical protein	A0A0U3TGX2	Pseudomonas_phage	8.3e-31	84.1
WP_023114613.1\|996060_996375_+	hypothetical protein	A0A0U4KL54	Pseudomonas_phage	9.5e-40	83.7
WP_023114614.1\|996374_996677_+	hypothetical protein	A0A0U4ISH7	Pseudomonas_phage	3.5e-39	94.0
WP_023114615.1\|997133_997670_+	DUF4406 domain-containing protein	A0A1B0YZW9	Pseudomonas_phage	5.0e-97	96.6
WP_023114616.1\|997699_998380_+	hypothetical protein	H2BDG4	Pseudomonas_virus	1.4e-80	66.7
WP_012613684.1\|998462_998711_+	hypothetical protein	H2BD39	Pseudomonas_phage	1.2e-37	92.7
WP_023114241.1\|999968_1000208_+	hypothetical protein	NA	NA	NA	NA
WP_023114239.1\|1000655_1000859_+	hypothetical protein	A0A125RNQ4	Pseudomonas_phage	1.0e-31	97.0
WP_023114619.1\|1000930_1001221_+	hypothetical protein	A0A0A1IWS9	Pseudomonas_phage	1.0e-48	99.0
WP_071538228.1\|1001434_1001644_+	DUF4224 domain-containing protein	A0A1B0VMB6	Pseudomonas_phage	2.9e-13	57.8
WP_023114620.1\|1001653_1002628_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J8E5	uncultured_Caudovirales_phage	1.9e-102	57.3
WP_079279453.1\|1002687_1005267_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
1002718:1002740	attR	NA	NA	NA	NA
WP_003092272.1\|1005333_1005657_+	ferredoxin family protein	NA	NA	NA	NA
WP_003113871.1\|1006083_1007088_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003115226.1\|1007192_1008086_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003098558.1\|1008131_1008767_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3

DBSCAN-SWA_2

1617660 : 1660717

Pseudomonas_phage(89.66%)

terminase,holin,lysis,portal,protease,tRNA,integrase

attL 1626163:1626179|attR 1665004:1665020

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003105684.1\|1617660_1618899_-\|tRNA	tyrosine--tRNA ligase	A0A2C9CX69	Yersinia_phage	7.8e-53	33.3
WP_023464645.1\|1619094_1619328_-	hypothetical protein	A0A0A0YQ17	Pseudomonas_phage	9.8e-34	96.0
WP_003451622.1\|1619324_1619627_-	hypothetical protein	A0A0S2SY61	Pseudomonas_phage	1.0e-46	94.0
WP_031637109.1\|1620182_1620464_-	hypothetical protein	A0A1W6JTD4	Pseudomonas_phage	1.5e-44	96.8
WP_031637108.1\|1620464_1621025_-	hypothetical protein	A0A0A0YWE7	Pseudomonas_phage	3.2e-99	98.9
WP_019486485.1\|1621027_1621219_-	hypothetical protein	A0A1W6JT89	Pseudomonas_phage	2.0e-29	100.0
WP_031637107.1\|1621211_1621799_-	hypothetical protein	A0A1W6JT86	Pseudomonas_phage	3.4e-99	93.3
WP_033943129.1\|1621828_1623487_-	hypothetical protein	A0A0A0YRR5	Pseudomonas_phage	0.0e+00	95.4
WP_033965873.1\|1623483_1623888_-	hypothetical protein	A0A0U4B0P9	Pseudomonas_phage	4.5e-66	98.5
WP_031637103.1\|1623898_1624444_-	hypothetical protein	A0A1B0YZV4	Pseudomonas_phage	7.8e-98	97.2
WP_031637101.1\|1624443_1624854_-	hypothetical protein	A0A1W6JT78	Pseudomonas_phage	1.0e-54	92.6
WP_031637099.1\|1624856_1626554_-	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	0.0e+00	97.5
1626163:1626179	attL	NA	NA	NA	NA
WP_016852557.1\|1626553_1627075_-	hypothetical protein	A0A1W6JT98	Pseudomonas_phage	3.7e-97	98.3
WP_023465052.1\|1627114_1629598_-	tape measure protein	A0A1B0YZV6	Pseudomonas_phage	0.0e+00	98.2
WP_010791966.1\|1629700_1630003_-	hypothetical protein	A0A1B0YZV7	Pseudomonas_phage	7.0e-48	99.0
WP_071535696.1\|1630067_1630595_-	DUF4124 domain-containing protein	A0A1B0Z2K9	Pseudomonas_phage	4.3e-93	98.9
WP_050397059.1\|1630666_1631188_-	GspH/FimT family pseudopilin	A0A1B0YZT9	Pseudomonas_phage	1.8e-91	99.4
WP_010791967.1\|1631269_1632022_-	hypothetical protein	A0A1W6JT83	Pseudomonas_phage	9.6e-139	100.0
WP_010791968.1\|1632023_1632218_-	hypothetical protein	A0A1W6JT79	Pseudomonas_phage	3.0e-28	100.0
WP_015980907.1\|1632221_1632692_-	hypothetical protein	A0A1W6JT75	Pseudomonas_phage	3.1e-87	99.4
WP_010791970.1\|1632688_1633018_-	hypothetical protein	A0A1W6JT71	Pseudomonas_phage	3.1e-57	100.0
WP_003129701.1\|1633014_1633332_-	DUF2190 family protein	A0A1W6JT93	Pseudomonas_phage	4.6e-50	100.0
WP_087851092.1\|1633398_1635492_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	0.0e+00	99.0
WP_019486499.1\|1635451_1637098_-\|portal	phage portal protein	A0A1W6JTB6	Pseudomonas_phage	0.0e+00	99.8
WP_003159069.1\|1637097_1637313_-	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	6.5e-32	100.0
WP_023086966.1\|1637303_1639268_-\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	0.0e+00	98.3
WP_003159067.1\|1639239_1639785_-\|terminase	terminase small subunit	A0A1B0Z033	Pseudomonas_phage	2.1e-95	98.9
WP_023086965.1\|1639936_1640680_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	3.1e-129	95.5
WP_031637094.1\|1640676_1641147_-\|lysis	lysis protein	A0A1B0Z001	Pseudomonas_phage	4.5e-70	91.0
WP_031637093.1\|1641143_1641764_-	glycoside hydrolase family 19 protein	A0A1W6JTC9	Pseudomonas_phage	2.3e-106	91.7
WP_004353177.1\|1641760_1642093_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.9e-54	96.4
WP_021205299.1\|1642177_1642876_-	Rha family transcriptional regulator	S5MQL6	Escherichia_phage	4.1e-27	61.2
WP_004353175.1\|1643243_1643633_-	hypothetical protein	A0A1W6JTD2	Pseudomonas_phage	2.2e-70	99.2
WP_010791980.1\|1643629_1643908_-	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	1.1e-44	98.9
WP_031640234.1\|1643904_1644594_-	metallophosphoesterase	A0A0A0YWI7	Pseudomonas_phage	1.8e-131	98.3
WP_170870586.1\|1644590_1644962_-	hypothetical protein	A0A0A0YQ44	Pseudomonas_phage	1.0e-48	97.1
WP_042176548.1\|1644958_1646389_-	replicative DNA helicase	A0A0A0YUG7	Pseudomonas_phage	1.8e-258	96.2
WP_003123987.1\|1646385_1647174_-	ATP-binding protein	A0A0A0YRV1	Pseudomonas_phage	1.2e-144	98.5
WP_023094541.1\|1648164_1648350_-	hypothetical protein	NA	NA	NA	NA
WP_010791987.1\|1648346_1648577_-	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	1.0e-38	97.4
WP_031637087.1\|1648573_1649344_-	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	4.9e-45	45.2
WP_023099085.1\|1649340_1649832_-	hypothetical protein	A0A0A0YUG0	Pseudomonas_phage	7.0e-90	100.0
WP_003123991.1\|1649828_1650062_-	hypothetical protein	A0A0A0YRU7	Pseudomonas_phage	3.7e-33	97.4
WP_019396625.1\|1650054_1650333_-	hypothetical protein	A0A0A0YR77	Pseudomonas_phage	4.6e-38	94.6
WP_019396626.1\|1650329_1650638_-	hypothetical protein	A0A0A0YWH5	Pseudomonas_phage	5.1e-46	94.1
WP_019396627.1\|1650634_1650913_-	hypothetical protein	A0A1W6JTC3	Pseudomonas_phage	4.9e-40	97.8
WP_031637084.1\|1650909_1651260_-	hypothetical protein	NA	NA	NA	NA
WP_023123496.1\|1651412_1651913_-	KilA-N domain-containing protein	Q9XJS9	Pseudomonas_phage	1.6e-41	53.6
WP_049950181.1\|1651909_1652248_-	hypothetical protein	A0A1W6JTD1	Pseudomonas_phage	6.5e-10	50.0
WP_003085702.1\|1652336_1653122_+	helix-turn-helix transcriptional regulator	A0A2K8HKD5	Pseudomonas_phage	6.4e-77	81.4
WP_019396631.1\|1653234_1653528_+	hypothetical protein	NA	NA	NA	NA
WP_012613694.1\|1653524_1653884_+	hypothetical protein	NA	NA	NA	NA
WP_107236447.1\|1653935_1654013_-	hypothetical protein	NA	NA	NA	NA
WP_019396633.1\|1654203_1654590_+	helix-turn-helix transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	1.4e-53	94.9
WP_021205288.1\|1654592_1654826_+	hypothetical protein	A0A0A0YQ28	Pseudomonas_phage	6.6e-38	100.0
WP_021205287.1\|1655345_1655612_+	hypothetical protein	NA	NA	NA	NA
WP_049250083.1\|1655641_1656376_+	Rha family transcriptional regulator	A0A1W6DWH5	Salmonella_phage	2.4e-17	45.6
WP_031637080.1\|1656455_1656686_+	Arc family DNA-binding protein	A0A1W6JTB4	Pseudomonas_phage	1.4e-27	85.1
WP_173655839.1\|1656688_1657567_+	hypothetical protein	A0A0A0YUE9	Pseudomonas_phage	9.9e-119	95.5
WP_049950182.1\|1657563_1658091_+	hypothetical protein	A0A0A0YRT2	Pseudomonas_phage	3.8e-49	96.0
WP_023093224.1\|1658203_1658395_+	hypothetical protein	A0A1W6JTB8	Pseudomonas_phage	5.4e-30	100.0
WP_023123491.1\|1658391_1659081_+	hypothetical protein	A0A0A0YUE3	Pseudomonas_phage	8.8e-123	96.9
WP_031637070.1\|1659085_1659442_+	hypothetical protein	NA	NA	NA	NA
WP_003158850.1\|1659425_1659668_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.1e-16	60.3
WP_003129398.1\|1659667_1660717_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.3e-101	53.7
1665004:1665020	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1825688 : 1861930

Pseudomonas_phage(58.33%)

tRNA,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003113167.1\|1825688_1826888_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_003129241.1\|1827172_1828516_+	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	3.0e-18	44.1
WP_003085271.1\|1828518_1829610_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_003085254.1\|1829663_1830014_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_003120826.1\|1830091_1830514_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085249.1\|1830514_1831234_-	hypothetical protein	NA	NA	NA	NA
WP_003113169.1\|1831233_1832268_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003085245.1\|1832558_1832981_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_003117983.1\|1832997_1833966_+	nitronate monooxygenase	NA	NA	NA	NA
WP_023114710.1\|1834087_1835170_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_023114711.1\|1835230_1836031_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003121853.1\|1836070_1837552_-	AAA family ATPase	U5XJW0	Phormidium_phage	3.9e-67	33.8
WP_003085225.1\|1837630_1837969_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003085224.1\|1838068_1838716_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003085223.1\|1838770_1839565_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_023114712.1\|1839884_1840307_-	OsmC family protein	NA	NA	NA	NA
WP_003085214.1\|1840578_1841223_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003085205.1\|1841284_1842121_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
WP_003085203.1\|1842117_1843167_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003117978.1\|1843168_1843774_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.1e-75	66.3
WP_003118930.1\|1844192_1844423_-	hypothetical protein	C8ZKF3	Pseudomonas_phage	1.4e-24	71.6
WP_023114713.1\|1844419_1844722_-	hypothetical protein	A0A0H5B141	Pseudomonas_phage	6.3e-33	70.0
WP_004352271.1\|1844721_1845774_-	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	2.7e-62	52.5
WP_004352270.1\|1845869_1846100_-	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	1.1e-18	64.0
WP_003113180.1\|1846080_1846416_-	hypothetical protein	NA	NA	NA	NA
WP_003115342.1\|1846415_1847507_-	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.3e-46	36.9
WP_004352269.1\|1847530_1848319_-	hypothetical protein	NA	NA	NA	NA
WP_004352268.1\|1848554_1852169_-\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	55.3
WP_016252934.1\|1852227_1852830_-\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	4.9e-53	57.3
WP_003129219.1\|1852884_1853655_-	C40 family peptidase	A0A2D1GNP8	Pseudomonas_phage	5.5e-81	55.6
WP_003118922.1\|1853657_1854353_-\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	1.5e-69	50.2
WP_003113186.1\|1854360_1854702_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
WP_023114714.1\|1854694_1856533_-\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	2.6e-28	35.8
WP_003113188.1\|1856579_1856834_-	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_004352265.1\|1856863_1857211_-\|tail	phage tail assembly chaperone family protein, TAC	NA	NA	NA	NA
WP_003113190.1\|1857222_1857717_-	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_003118919.1\|1858032_1858290_-	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003142810.1\|1858286_1858649_-	hypothetical protein	NA	NA	NA	NA
WP_003118917.1\|1858645_1859275_-	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	7.1e-87	78.0
WP_003117965.1\|1859290_1859638_-\|holin	holin	B5TK61	Pseudomonas_phage	3.9e-26	51.8
WP_003113201.1\|1860094_1860454_-	hypothetical protein	NA	NA	NA	NA
WP_003085132.1\|1860501_1860702_-	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003113202.1\|1861159_1861930_+	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1

DBSCAN-SWA_4

2996921 : 3066001

Pseudomonas_virus(79.07%)

terminase,plate,holin,head,tail,transposase,portal,capsid,integrase

attL 3049857:3049902|attR 3066097:3066142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023114964.1\|2996921_2997902_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_023114963.1\|2998832_3000152_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.2e-64	34.2
WP_023114962.1\|3000687_3001194_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_023114961.1\|3001197_3001368_-	hypothetical protein	NA	NA	NA	NA
WP_023114960.1\|3001660_3002809_-	hypothetical protein	V9IQN0	Stenotrophomonas_phage	1.8e-72	40.5
WP_023114959.1\|3002805_3003018_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_023114958.1\|3003014_3003203_-	hypothetical protein	Q38017	Pseudomonas_virus	7.0e-06	76.5
WP_023114957.1\|3003213_3004899_-	hypothetical protein	L7TH64	Pseudomonas_virus	4.8e-287	90.8
WP_003098417.1\|3005202_3005409_-	TraR/DksA family transcriptional regulator	Q9ZXI6	Pseudomonas_virus	7.3e-33	100.0
WP_113774874.1\|3005420_3005750_-	hypothetical protein	Q9ZXI7	Pseudomonas_virus	1.4e-54	96.3
WP_023121183.1\|3005817_3008538_-	toprim domain-containing protein	Q9ZXI8	Pseudomonas_virus	0.0e+00	96.6
WP_003098410.1\|3008534_3008768_-	hypothetical protein	Q9ZXI9	Pseudomonas_virus	7.8e-39	100.0
WP_023096288.1\|3008838_3009189_-	hypothetical protein	NA	NA	NA	NA
WP_003098408.1\|3009185_3009479_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.1e-50	99.0
WP_031293865.1\|3009475_3009946_-	hypothetical protein	Q9ZXJ2	Pseudomonas_virus	2.5e-76	93.6
WP_031643139.1\|3009975_3010188_-	hypothetical protein	A0A2H4JE67	uncultured_Caudovirales_phage	1.9e-07	46.8
WP_031643138.1\|3010272_3010629_+	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	2.0e-06	42.1
WP_023096284.1\|3010946_3011297_+	hypothetical protein	Q9ZXJ5	Pseudomonas_virus	2.9e-53	89.6
WP_031633861.1\|3011350_3011884_-	hypothetical protein	NA	NA	NA	NA
WP_071534455.1\|3012006_3012546_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_086009326.1\|3012821_3013960_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.7e-47	38.7
WP_069985552.1\|3014025_3015294_-	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	3.1e-230	96.4
WP_003098399.1\|3015290_3015731_-\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	1.8e-76	99.3
WP_023114949.1\|3015736_3018484_-\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	0.0e+00	94.1
WP_003098394.1\|3018473_3018593_-\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	1.8e-15	100.0
WP_023083449.1\|3018601_3018931_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	5.3e-49	96.3
WP_023114948.1\|3018985_3019501_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	2.1e-89	94.2
WP_023114947.1\|3019557_3020733_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	2.3e-219	98.5
WP_023114946.1\|3020823_3021288_-	hypothetical protein	Q9ZXK5	Pseudomonas_virus	2.3e-42	60.7
WP_023091255.1\|3023643_3024180_-\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.1e-99	99.4
WP_023114945.1\|3024179_3025094_-\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	7.0e-160	96.7
WP_023089207.1\|3025090_3025435_-	GPW/gp25 family protein	Q9ZXK9	Pseudomonas_virus	4.6e-56	97.4
WP_023089206.1\|3025431_3026004_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	9.7e-91	96.8
WP_023089205.1\|3026181_3026610_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023089204.1\|3026619_3027078_-	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	9.8e-70	91.3
WP_016852031.1\|3027070_3027607_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	7.9e-95	98.9
WP_016852030.1\|3027684_3028146_-	peptidase	Q9ZXL5	Pseudomonas_virus	5.3e-63	87.6
WP_016852029.1\|3028142_3028385_-	hypothetical protein	NA	NA	NA	NA
WP_023114944.1\|3028381_3029188_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	9.0e-143	96.9
WP_003098380.1\|3029184_3029457_-\|holin	phage holin family protein	Q9ZXL7	Pseudomonas_virus	2.6e-38	97.8
WP_003098379.1\|3029458_3029812_-	hypothetical protein	Q9ZXL8	Pseudomonas_virus	6.0e-59	100.0
WP_023116818.1\|3030047_3030509_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	6.8e-79	97.4
WP_023083461.1\|3030612_3031314_-\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	6.2e-124	98.7
WP_016852024.1\|3031319_3032336_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	6.6e-191	99.1
WP_023121181.1\|3032371_3033193_-\|capsid	GPO family capsid scaffolding protein	Q9ZXM4	Pseudomonas_virus	2.2e-128	98.9
WP_031643136.1\|3033348_3035109_+\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	0.0e+00	99.8
WP_023114940.1\|3035108_3036164_+\|portal	phage portal protein	Q9ZXM6	Pseudomonas_virus	6.0e-195	96.5
WP_124033784.1\|3036160_3036580_-	hypothetical protein	L7TJK7	Pseudomonas_virus	2.2e-23	38.8
WP_071534457.1\|3037010_3037538_-	SocA family protein	NA	NA	NA	NA
WP_003096173.1\|3038600_3040130_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_003105511.1\|3040140_3041325_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_003112617.1\|3041339_3042818_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_003110596.1\|3042821_3043292_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_010793675.1\|3043690_3044911_-	methyltransferase	NA	NA	NA	NA
WP_003096163.1\|3044979_3045672_-	ABC transporter permease	NA	NA	NA	NA
WP_016562461.1\|3045668_3046364_-	ABC transporter permease	NA	NA	NA	NA
WP_003096156.1\|3046425_3047178_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003096153.1\|3047192_3047966_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.3e-20	31.1
WP_023114939.1\|3048214_3048904_-	DUF502 domain-containing protein	NA	NA	NA	NA
WP_003096148.1\|3049062_3049800_+	SDR family oxidoreductase	NA	NA	NA	NA
3049857:3049902	attL	NA	NA	NA	NA
WP_023114938.1\|3050307_3051654_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_086009326.1\|3051680_3052819_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.7e-47	38.7
WP_031637489.1\|3053367_3053820_+	hypothetical protein	NA	NA	NA	NA
WP_124074571.1\|3053875_3054097_-	hypothetical protein	NA	NA	NA	NA
WP_162794317.1\|3054722_3054944_+	hypothetical protein	NA	NA	NA	NA
WP_124033779.1\|3054957_3055272_+	hypothetical protein	NA	NA	NA	NA
WP_023114937.1\|3055268_3057524_+	DotA/TraY family protein	NA	NA	NA	NA
WP_124033778.1\|3057524_3057860_-	hypothetical protein	NA	NA	NA	NA
WP_023114936.1\|3058127_3059174_+	hypothetical protein	NA	NA	NA	NA
WP_023114935.1\|3059725_3060928_-	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	1.5e-40	30.1
WP_023114934.1\|3060946_3061609_-	hypothetical protein	NA	NA	NA	NA
WP_023114933.1\|3061751_3062144_-	hypothetical protein	NA	NA	NA	NA
WP_154070651.1\|3062495_3064574_-	hypothetical protein	NA	NA	NA	NA
WP_023114931.1\|3064885_3066001_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	4.0e-48	38.4
3066097:3066142	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4235066 : 4273347

Pseudomonas_virus(83.78%)

terminase,plate,holin,head,tail,portal,capsid,integrase

attL 4237159:4237204|attR 4274156:4274201

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018076254.1\|4235066_4236920_-\|integrase	tyrosine-type recombinase/integrase	A0A0U1UNT3	Pseudomonas_phage	1.1e-103	51.0
4237159:4237204	attL	NA	NA	NA	NA
WP_023115037.1\|4237357_4238560_+\|integrase	integrase family protein	A0A248SL35	Klebsiella_phage	2.2e-36	30.9
WP_003098423.1\|4238566_4238770_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_016852059.1\|4238962_4239331_-	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	2.7e-30	50.4
WP_016852058.1\|4239327_4239504_-	hypothetical protein	Q38017	Pseudomonas_virus	5.5e-05	70.6
WP_023115038.1\|4239514_4240747_-	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	7.2e-176	72.1
WP_023115039.1\|4240743_4242654_-	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	6.6e-285	94.3
WP_003098417.1\|4242957_4243164_-	TraR/DksA family transcriptional regulator	Q9ZXI6	Pseudomonas_virus	7.3e-33	100.0
WP_023114956.1\|4243175_4243529_-	hypothetical protein	Q9ZXI7	Pseudomonas_virus	2.4e-60	97.4
WP_023115041.1\|4246289_4246523_-	hypothetical protein	Q9ZXI9	Pseudomonas_virus	2.9e-38	98.7
WP_003098409.1\|4246594_4246945_-	hypothetical protein	NA	NA	NA	NA
WP_003098408.1\|4246941_4247235_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.1e-50	99.0
WP_023089222.1\|4247237_4247429_-	hypothetical protein	NA	NA	NA	NA
WP_023114954.1\|4247427_4247646_+	hypothetical protein	NA	NA	NA	NA
WP_031637512.1\|4247653_4248127_-	hypothetical protein	Q9ZXJ2	Pseudomonas_virus	3.3e-52	69.5
WP_020750421.1\|4248156_4248387_-	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA
WP_049262809.1\|4248431_4248884_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_124119585.1\|4249091_4249589_+	hypothetical protein	NA	NA	NA	NA
WP_023114952.1\|4249585_4250782_+	DGQHR domain-containing protein	NA	NA	NA	NA
WP_023114951.1\|4250778_4251582_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	1.5e-44	37.3
WP_023115044.1\|4251642_4252926_-	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	1.4e-235	97.4
WP_003098399.1\|4252922_4253363_-\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	1.8e-76	99.3
WP_023115045.1\|4253368_4256128_-\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	0.0e+00	92.3
WP_003098394.1\|4256117_4256237_-\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	1.8e-15	100.0
WP_016852041.1\|4256245_4256575_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	1.5e-48	95.4
WP_057427955.1\|4256629_4257145_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	7.4e-90	94.2
WP_023115047.1\|4257201_4258377_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	2.3e-219	98.5
WP_023115048.1\|4258467_4258929_-	hypothetical protein	Q9ZXK5	Pseudomonas_virus	8.5e-37	53.9
WP_023115049.1\|4258980_4261371_-\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	0.0e+00	89.2
WP_023115050.1\|4261907_4262822_-\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	4.4e-154	94.1
WP_016852034.1\|4262818_4263163_-	GPW/gp25 family protein	Q9ZXK9	Pseudomonas_virus	7.9e-56	97.4
WP_016852033.1\|4263159_4263732_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	3.6e-93	98.9
WP_016852032.1\|4263801_4264260_-	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	7.0e-68	89.5
WP_016852031.1\|4264252_4264789_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	7.9e-95	98.9
WP_016852030.1\|4264866_4265328_-	peptidase	Q9ZXL5	Pseudomonas_virus	5.3e-63	87.6
WP_016852029.1\|4265324_4265567_-	hypothetical protein	NA	NA	NA	NA
WP_023115051.1\|4265563_4266370_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	1.0e-141	96.2
WP_003098380.1\|4266366_4266639_-\|holin	phage holin family protein	Q9ZXL7	Pseudomonas_virus	2.6e-38	97.8
WP_003098379.1\|4266640_4266994_-	hypothetical protein	Q9ZXL8	Pseudomonas_virus	6.0e-59	100.0
WP_003098378.1\|4267018_4267231_-\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	4.9e-32	94.1
WP_023083460.1\|4267230_4267692_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	3.1e-79	98.0
WP_023114941.1\|4267795_4268497_-\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	1.1e-123	98.7
WP_023091259.1\|4268502_4269519_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	1.7e-191	99.4
WP_023089196.1\|4269554_4270376_-\|capsid	GPO family capsid scaffolding protein	Q9ZXM4	Pseudomonas_virus	3.4e-129	99.6
WP_031275675.1\|4270531_4272295_+\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	0.0e+00	100.0
WP_023114045.1\|4272291_4273347_+\|portal	phage portal protein	Q9ZXM6	Pseudomonas_virus	1.7e-197	97.1
4274156:4274201	attR	NA	NA	NA	NA

DBSCAN-SWA_6

5722280 : 5773701

Pseudomonas_phage(86.76%)

integrase

attL 5722828:5722843|attR 5757679:5757694

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003111315.1\|5722280_5723870_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	5.9e-61	28.3
5722828:5722843	attL	NA	NA	NA	NA
WP_029528952.1\|5723900_5725118_-\|integrase	site-specific integrase	A0A125RNP5	Pseudomonas_phage	3.0e-230	99.0
WP_069985575.1\|5725397_5725811_-	DUF2591 family protein	J7I4M3	Pseudomonas_phage	1.6e-15	39.0
WP_069985574.1\|5725807_5726044_-	hypothetical protein	Q9MC84	Pseudomonas_phage	5.1e-30	81.6
WP_079860043.1\|5726040_5726298_-	hypothetical protein	B5WZV2	Pseudomonas_phage	1.8e-28	90.0
WP_042853643.1\|5726375_5726675_-	hypothetical protein	A0A125RNP8	Pseudomonas_phage	1.3e-30	52.6
WP_123822976.1\|5727108_5727312_-	hypothetical protein	D4FUM8	Pseudomonas_phage	6.5e-34	100.0
WP_023110787.1\|5727581_5727728_-	hypothetical protein	A0A0U4JX59	Pseudomonas_phage	1.2e-18	100.0
WP_014603741.1\|5727904_5728108_-	hypothetical protein	A0A125RNQ4	Pseudomonas_phage	8.0e-32	97.0
WP_174235618.1\|5728104_5728395_-	hypothetical protein	W6MVL9	Pseudomonas_phage	1.4e-29	65.4
WP_033994106.1\|5728391_5728598_-	hypothetical protein	D4FUN0	Pseudomonas_phage	4.0e-23	80.6
WP_016852532.1\|5728590_5728872_-	DUF4031 domain-containing protein	A0A125RNQ7	Pseudomonas_phage	3.6e-46	100.0
WP_015994304.1\|5730276_5730447_-	hypothetical protein	A0A125RNQ9	Pseudomonas_phage	2.2e-22	100.0
WP_003088363.1\|5730640_5730799_-	hypothetical protein	Q9MC73	Pseudomonas_phage	1.3e-24	100.0
WP_023114245.1\|5730809_5731145_-	LytTR family transcriptional regulator	H2BDF6	Pseudomonas_virus	1.9e-46	83.8
WP_023114246.1\|5731141_5731762_-	YqaJ viral recombinase family protein	A0A0S2SY31	Pseudomonas_phage	3.7e-104	91.2
WP_023114247.1\|5731745_5732492_-	phage recombination protein Bet	A0A0S2SY88	Pseudomonas_phage	1.7e-127	89.9
WP_023114248.1\|5732499_5733564_-	hypothetical protein	A0A0S2SYC7	Pseudomonas_phage	4.6e-70	97.7
WP_023098766.1\|5733627_5733765_-	hypothetical protein	A0A0S2SY24	Pseudomonas_phage	1.9e-16	97.7
WP_023098765.1\|5733761_5734793_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	3.5e-107	57.2
WP_033997386.1\|5734899_5735193_-	hypothetical protein	NA	NA	NA	NA
WP_154070654.1\|5735189_5735759_-	hypothetical protein	Q9MC57	Pseudomonas_phage	6.4e-18	47.3
WP_069985570.1\|5735755_5736121_-	hypothetical protein	B5WZX0	Pseudomonas_phage	3.2e-63	95.9
WP_023098762.1\|5736117_5736342_-	hypothetical protein	A0A0U4JX53	Pseudomonas_phage	3.7e-38	100.0
WP_023110775.1\|5736555_5736744_-	hypothetical protein	NA	NA	NA	NA
WP_023110774.1\|5736777_5737272_-	HNH endonuclease	S5YLC4	Mycobacterium_phage	4.0e-24	39.0
WP_079860042.1\|5737281_5737794_-	DUF1566 domain-containing protein	A0A0A0YR68	Pseudomonas_phage	2.7e-28	45.2
WP_023114255.1\|5737990_5738479_-	DUF1566 domain-containing protein	H2BDH2	Pseudomonas_virus	2.1e-70	82.1
WP_023110772.1\|5738701_5738941_-	hypothetical protein	NA	NA	NA	NA
WP_023114257.1\|5739324_5740503_-	glycosyltransferase	NA	NA	NA	NA
WP_023114258.1\|5740946_5741657_-	LexA family transcriptional regulator	Q6J1N3	Burkholderia_virus	5.7e-32	38.8
WP_023113651.1\|5741757_5741937_+	Cro/Cl family transcriptional regulator	A0A0S2SYB8	Pseudomonas_phage	6.6e-14	66.1
WP_023114259.1\|5741950_5742139_+	hypothetical protein	B5WZX7	Pseudomonas_phage	3.6e-10	58.1
WP_023114260.1\|5742516_5743311_+	replication protein	W6MYB0	Pseudomonas_phage	5.3e-47	65.8
WP_049879082.1\|5743307_5744708_+	AAA family ATPase	A0A125RNK2	Pseudomonas_phage	1.4e-255	99.4
WP_029528925.1\|5744820_5745141_+	hypothetical protein	A0A1P8DTU9	Salmonella_phage	1.3e-36	65.0
WP_023114264.1\|5745133_5745337_+	TraR/DksA C4-type zinc finger protein	A0A0S2SYW7	Pseudomonas_phage	1.6e-27	89.4
WP_023114265.1\|5745336_5745588_+	hypothetical protein	NA	NA	NA	NA
WP_033993424.1\|5745580_5745856_+	hypothetical protein	NA	NA	NA	NA
WP_023114266.1\|5745848_5746079_+	hypothetical protein	NA	NA	NA	NA
WP_003124795.1\|5746071_5746659_+	DUF1367 family protein	Q9MC49	Pseudomonas_phage	1.2e-109	99.5
WP_023114267.1\|5746655_5746916_+	hypothetical protein	A0A0S2SYB2	Pseudomonas_phage	1.3e-07	44.8
WP_023114268.1\|5746912_5747230_+	hypothetical protein	B5WZY6	Pseudomonas_phage	3.9e-57	98.1
WP_033993423.1\|5747223_5747865_+	recombination protein NinG	A0A0S2SY91	Pseudomonas_phage	1.9e-111	95.7
WP_033945916.1\|5747864_5748182_+	hypothetical protein	Q9MC45	Pseudomonas_phage	8.1e-47	94.3
WP_069985568.1\|5748252_5748939_+	hypothetical protein	A0A0S2SYA9	Pseudomonas_phage	4.8e-129	97.4
WP_023434898.1\|5750130_5750463_+	peptidase M48	A0A125RNL3	Pseudomonas_phage	2.6e-56	100.0
WP_023098997.1\|5750465_5750738_+	hypothetical protein	A0A125RNL4	Pseudomonas_phage	8.8e-42	100.0
WP_031285280.1\|5750734_5751358_+	hypothetical protein	A0A125RNL5	Pseudomonas_phage	1.2e-121	99.0
WP_023114271.1\|5751389_5751869_+	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	5.3e-66	91.5
WP_023114272.1\|5751858_5753322_+	hypothetical protein	G0ZND4	Cronobacter_phage	5.3e-242	84.0
WP_014603761.1\|5753321_5753519_+	hypothetical protein	H2BD77	Pseudomonas_phage	2.3e-28	100.0
WP_113774878.1\|5753521_5754892_+	DUF1073 domain-containing protein	H2BD78	Pseudomonas_phage	3.0e-263	98.0
WP_023114274.1\|5754854_5755778_+	hypothetical protein	H2BD79	Pseudomonas_phage	1.9e-168	98.4
WP_033993386.1\|5755781_5757059_+	hypothetical protein	H2BD80	Pseudomonas_phage	1.1e-211	96.9
WP_023082510.1\|5757062_5757512_+	hypothetical protein	A0A125RNM2	Pseudomonas_phage	2.8e-77	98.7
WP_033993389.1\|5757527_5758619_+	hypothetical protein	J7I0Q9	Pseudomonas_phage	1.6e-187	89.8
5757679:5757694	attR	NA	NA	NA	NA
WP_033993390.1\|5758629_5759088_+	DivIVA domain-containing protein	A0A125RNM4	Pseudomonas_phage	7.6e-46	68.4
WP_033993391.1\|5759172_5759574_+	hypothetical protein	J7HX89	Pseudomonas_phage	1.5e-69	97.0
WP_033982952.1\|5759570_5759891_+	hypothetical protein	J7I4I8	Pseudomonas_phage	3.3e-56	96.2
WP_033993392.1\|5759892_5760297_+	hypothetical protein	H2BD87	Pseudomonas_phage	3.6e-68	99.3
WP_003127992.1\|5760293_5760668_+	hypothetical protein	J7I407	Pseudomonas_phage	5.7e-68	100.0
WP_023114281.1\|5760682_5761678_+	Ig-like domain-containing protein	J7HX84	Pseudomonas_phage	3.2e-166	98.2
WP_174235625.1\|5761754_5762291_+	hypothetical protein	A0A125RNN1	Pseudomonas_phage	1.5e-98	100.0
WP_033993393.1\|5762290_5764792_+	tape measure protein	A0A127KNB7	Pseudomonas_phage	0.0e+00	98.8
WP_023114283.1\|5764788_5765256_+	hypothetical protein	H2BD92	Pseudomonas_phage	9.3e-92	98.7
WP_033993394.1\|5765239_5765731_+	DUF1833 family protein	J7I404	Pseudomonas_phage	2.8e-86	95.1
WP_023114285.1\|5765735_5766143_+	hypothetical protein	J7HX80	Pseudomonas_phage	2.2e-73	98.5
WP_033993395.1\|5766114_5768838_+	hypothetical protein	H2BD95	Pseudomonas_phage	0.0e+00	83.4
WP_174235626.1\|5768898_5771364_+	hypothetical protein	Q9MC94	Pseudomonas_phage	4.1e-69	59.6
WP_023110735.1\|5771457_5772189_-	hypothetical protein	Q9MC91	Pseudomonas_phage	8.2e-111	96.0
WP_023102118.1\|5772219_5772702_+	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	2.1e-86	99.4
WP_069985567.1\|5772698_5773067_+	hypothetical protein	H2BDA0	Pseudomonas_phage	6.1e-46	84.4
WP_069985580.1\|5773135_5773399_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	3.1e-36	93.0
WP_003102455.1\|5773434_5773701_+	hypothetical protein	L7TP56	Pseudomonas_virus	1.8e-44	98.9

DBSCAN-SWA_7

6256391 : 6295744

Enterobacteria_phage(33.33%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003122697.1\|6256391_6257723_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_003104701.1\|6257782_6258259_-	hypothetical protein	NA	NA	NA	NA
WP_003089493.1\|6258467_6259013_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003089495.1\|6260592_6261090_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_023114403.1\|6261102_6261528_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_023114404.1\|6261511_6263305_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003104928.1\|6263268_6264285_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_019681913.1\|6264286_6266836_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.2e-76	29.4
WP_003116944.1\|6266926_6267802_+	hypothetical protein	NA	NA	NA	NA
WP_023114405.1\|6267871_6268657_+	hypothetical protein	NA	NA	NA	NA
WP_023114406.1\|6268663_6270667_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	6.9e-43	29.8
WP_003114514.1\|6270677_6271214_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_003089513.1\|6271236_6271632_-	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_003110901.1\|6271908_6272550_+	response regulator transcription factor	NA	NA	NA	NA
WP_003115787.1\|6272750_6273956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003160318.1\|6274372_6276688_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_003089521.1\|6276684_6277155_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003104944.1\|6277419_6277656_-	hypothetical protein	NA	NA	NA	NA
WP_003089526.1\|6277950_6278193_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_023114407.1\|6278269_6279421_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003124571.1\|6279516_6280437_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023114408.1\|6280982_6283271_-	acylase	NA	NA	NA	NA
WP_003114509.1\|6283393_6284725_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_003103620.1\|6284857_6285337_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012614142.1\|6285500_6286496_+	FecR family protein	NA	NA	NA	NA
WP_003089547.1\|6286596_6287772_+	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_003131508.1\|6287771_6289763_+	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	6.9e-35	39.3
WP_003120134.1\|6289768_6291193_+	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_003139293.1\|6291241_6292876_-	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_016253415.1\|6293091_6294438_+\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_016253414.1\|6294460_6295744_+\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA

DBSCAN-SWA_8

6596674 : 6603567

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003090386.1\|6596674_6597343_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_003090387.1\|6597452_6597848_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090389.1\|6597844_6598204_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090391.1\|6598203_6598509_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090393.1\|6598505_6598841_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
WP_003108776.1\|6598837_6599821_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_023114465.1\|6599908_6600883_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003113366.1\|6600887_6602285_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003160440.1\|6602286_6603567_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.8e-98	45.4

Anti-CRISPR protein detection

Acr_ID: NZ_CP030861.1|WP_003158159.1|4574495_4574819_-|hypothetical-protein

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Acr_ID: NZ_CP030861.1|WP_021205795.1|4574837_4575230_-|hypothetical-protein

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Acr_ID: NZ_CP030861.1|WP_003158163.1|4576971_4577346_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP030861.1|WP_003158159.1|4574495_4574819_-|hypothetical-protein

4574495_4574819_-

107 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|15	0.6213592233009708	0.9719626168224299	0.99

NZ_CP030861.1|WP_021205795.1|4574837_4575230_-|hypothetical-protein

4574837_4575230_-

130 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|3	0.4251968503937008	0.9307692307692308	0.8785714285714286

NZ_CP030861.1|WP_003158163.1|4576971_4577346_-|hypothetical-protein

4576971_4577346_-

124 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|27	1.0	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP030861

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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