CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP030274	Rhodobacter sphaeroides 2.4.1 plasmid pB, complete sequence	0 crisprs	NA	0	0
NZ_CP030272	Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence	0 crisprs	csa3	0	3
NZ_CP030275	Rhodobacter sphaeroides 2.4.1 plasmid pC, complete sequence	0 crisprs	NA	0	0
NZ_CP030271	Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence	1 crisprs	csa3,DEDDh,cas3	0	7
NZ_CP030273	Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence	2 crisprs	NA	2	1
NZ_CP030276	Rhodobacter sphaeroides 2.4.1 plasmid pDE, complete sequence	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

371624 : 428770

Vibrio_phage(17.65%)

transposase,protease,integrase,tail

attL 371771:371789|attR 398503:398521

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011339201.1\|371624_373001_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
371771:371789	attL	NA	NA	NA	NA
WP_011339202.1\|373517_374810_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011339203.1\|374806_375508_-	hypothetical protein	NA	NA	NA	NA
WP_017140353.1\|375504_375720_-	hypothetical protein	NA	NA	NA	NA
WP_017140354.1\|375716_375926_-	DUF4031 domain-containing protein	A0A0A8IK97	Aurantimonas_phage	7.7e-14	59.1
WP_017140355.1\|376082_376352_-	hypothetical protein	A0A1X9HWB1	Ruegeria_phage	6.9e-07	36.7
WP_017140356.1\|376348_376576_-	hypothetical protein	NA	NA	NA	NA
WP_017140357.1\|376670_377108_+	hypothetical protein	Q8W6P3	Burkholderia_virus	1.6e-13	36.6
WP_011339204.1\|377104_377611_+	hypothetical protein	M4SPS7	Rhodobacter_phage	3.3e-10	39.2
WP_002723970.1\|377932_378577_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011339205.1\|378601_381721_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011339206.1\|381737_382901_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011339207.1\|382997_384833_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_011339208.1\|385068_386871_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002723978.1\|387395_388223_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011339210.1\|388405_389911_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_011339211.1\|389924_390398_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_011339212.1\|390541_391201_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_011339213.1\|391348_392260_-	porin	NA	NA	NA	NA
WP_002723983.1\|392500_392674_-	YdcH family protein	NA	NA	NA	NA
WP_030002931.1\|393204_393888_+	DUF2306 domain-containing protein	NA	NA	NA	NA
WP_011339215.1\|394395_396174_+	SLC13 family permease	NA	NA	NA	NA
WP_011339216.1\|396307_396772_-	cupin domain-containing protein	NA	NA	NA	NA
WP_011339217.1\|396830_397547_-	LrgB family protein	NA	NA	NA	NA
WP_011339218.1\|397539_397893_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_017140360.1\|398001_398658_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
398503:398521	attR	NA	NA	NA	NA
WP_011339220.1\|398658_399495_-	ABC transporter permease	NA	NA	NA	NA
WP_009561538.1\|399496_400360_-	ABC transporter permease	NA	NA	NA	NA
WP_011339221.1\|400592_401858_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_011339222.1\|401883_402861_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-21	32.2
WP_011339223.1\|403072_403786_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011339224.1\|403933_404371_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_011339225.1\|404367_405267_-	EamA family transporter RarD	NA	NA	NA	NA
WP_009561543.1\|405761_406259_+	bacterioferritin	NA	NA	NA	NA
WP_011339226.1\|406938_408045_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011339227.1\|408051_409524_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	3.7e-09	32.1
WP_023004202.1\|409921_411085_+	AI-2E family transporter	NA	NA	NA	NA
WP_011339229.1\|411094_413821_-	methionine synthase	NA	NA	NA	NA
WP_160384144.1\|413817_414843_-	homocysteine S-methyltransferase family protein	A0A140XBC7	Dickeya_phage	1.2e-14	54.0
WP_011339231.1\|415172_416051_+	hypothetical protein	NA	NA	NA	NA
WP_017140362.1\|416047_417091_+	lipocalin	NA	NA	NA	NA
WP_002724021.1\|417443_417677_+	hypothetical protein	NA	NA	NA	NA
WP_011339233.1\|418096_418291_+	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	8.8e-12	58.2
WP_011339235.1\|418571_419069_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	6.8e-24	37.7
WP_011339236.1\|419083_419380_+\|tail	phage tail assembly protein	E5E3Q0	Burkholderia_phage	8.4e-14	51.2
WP_017140364.1\|419406_419535_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_011339237.1\|419544_421872_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	7.0e-55	37.9
WP_017140365.1\|421864_422275_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	8.6e-33	50.4
WP_011339239.1\|422271_422484_+\|tail	tail protein X	R9TR63	Vibrio_phage	9.9e-09	47.8
WP_011339240.1\|422480_423455_+\|tail	phage tail protein	D4HTW7	Vibrio_phage	1.0e-44	38.6
WP_017140366.1\|423598_424426_+	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	3.9e-93	62.3
WP_017140367.1\|424763_425822_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	3.3e-60	38.8
WP_160384142.1\|425989_426985_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_017140369.1\|427417_427921_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_114071698.1\|427948_428770_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	8.9e-21	32.2

DBSCAN-SWA_2

739306 : 746477

Rhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011339479.1\|739306_740653_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	6.7e-58	47.0
WP_011339480.1\|740661_740973_+	hypothetical protein	NA	NA	NA	NA
WP_011339481.1\|740969_741389_+	hypothetical protein	NA	NA	NA	NA
WP_017140410.1\|742422_742740_+	hypothetical protein	NA	NA	NA	NA
WP_011339484.1\|742743_743070_+	hypothetical protein	NA	NA	NA	NA
WP_011339485.1\|743203_743521_+	hypothetical protein	I3UM16	Rhodobacter_phage	2.8e-23	57.9
WP_011339486.1\|743573_743795_-	hypothetical protein	NA	NA	NA	NA
WP_017140411.1\|743787_744060_-	BrnT family toxin	K4NX81	Burkholderia_phage	2.4e-15	48.2
WP_114071701.1\|744287_745094_+	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	5.6e-84	58.6
WP_011339489.1\|745148_745958_+	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	7.1e-63	49.1
WP_011339490.1\|745970_746477_+	hypothetical protein	F8TVB7	EBPR_siphovirus	3.9e-11	48.2

DBSCAN-SWA_3

885676 : 923677

Rhodobacter_phage(25.93%)

head,integrase,capsid,portal,terminase

attL 873233:873278|attR 923740:923785

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
873233:873278	attL	NA	NA	NA	NA
WP_011339591.1\|885676_887008_-	DNA cytosine methyltransferase	A0A191SB20	Nostoc_phage	6.4e-53	36.2
WP_011339592.1\|887059_887488_-	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	8.7e-36	50.4
WP_011339593.1\|887740_888223_-	hypothetical protein	F8TVB7	EBPR_siphovirus	1.2e-12	51.8
WP_011339594.1\|888235_889045_-	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	9.2e-63	49.4
WP_011339595.1\|889099_889906_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	3.4e-81	57.0
WP_011339596.1\|890274_890637_-	hypothetical protein	NA	NA	NA	NA
WP_011339597.1\|890888_891206_-	hypothetical protein	I3UM16	Rhodobacter_phage	3.7e-23	57.9
WP_011339598.1\|891424_891751_-	hypothetical protein	NA	NA	NA	NA
WP_011339599.1\|891754_892072_-	hypothetical protein	NA	NA	NA	NA
WP_011339600.1\|892078_893563_-	hypothetical protein	A0A1S5R1J5	Pseudomonas_phage	1.7e-14	30.8
WP_011339601.1\|893578_894469_-	hypothetical protein	A0A2H4J8C7	uncultured_Caudovirales_phage	8.1e-28	31.0
WP_061350892.1\|894468_899643_-	hypothetical protein	F1C5E9	Cronobacter_phage	2.4e-07	28.5
WP_017140287.1\|899745_900243_+	YbjQ family protein	M4STD1	Rhodobacter_phage	4.2e-26	42.6
WP_017140288.1\|900205_900568_-	hypothetical protein	NA	NA	NA	NA
WP_017140289.1\|900630_901071_-	hypothetical protein	NA	NA	NA	NA
WP_011339606.1\|901174_901645_-	hypothetical protein	M4QQ74	Salicola_phage	1.2e-17	38.9
WP_011339607.1\|901756_902179_-	hypothetical protein	NA	NA	NA	NA
WP_011339608.1\|902175_902502_-	hypothetical protein	NA	NA	NA	NA
WP_011339609.1\|902512_903535_-\|capsid	major capsid protein	K4I3Z3	Acidithiobacillus_phage	1.1e-105	56.3
WP_011339610.1\|903616_904006_-\|head	head decoration protein	K4ICP8	Acidithiobacillus_phage	3.6e-20	45.7
WP_011339611.1\|904141_905488_-	S49 family peptidase	A0A068CE01	Rhizobium_phage	8.7e-58	48.2
WP_011339612.1\|905484_906975_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	1.9e-178	67.4
WP_002723266.1\|906974_907184_-	hypothetical protein	NA	NA	NA	NA
WP_011339613.1\|907180_909343_-\|terminase	phage terminase large subunit family protein	A0A291AUS9	Sinorhizobium_phage	1.9e-102	35.4
WP_017140290.1\|909342_909999_-\|terminase	terminase small subunit	NA	NA	NA	NA
WP_011339615.1\|910127_910844_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	4.0e-17	30.5
WP_017140292.1\|910956_911793_-	hypothetical protein	I3ULZ3	Rhodobacter_phage	9.4e-18	47.1
WP_011339617.1\|911789_912374_-	hypothetical protein	NA	NA	NA	NA
WP_002723274.1\|912593_913247_-	hypothetical protein	NA	NA	NA	NA
WP_011339618.1\|913243_913531_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_011339619.1\|913527_913995_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011339620.1\|913991_914513_-	DUF1937 family protein	I3UM60	Rhodobacter_phage	2.7e-23	42.3
WP_011339621.1\|914649_914910_-	hypothetical protein	NA	NA	NA	NA
WP_002723285.1\|914906_915167_-	hypothetical protein	A0A1X9HW32	Ruegeria_phage	1.8e-07	50.7
WP_017140293.1\|915247_915484_-	hypothetical protein	NA	NA	NA	NA
WP_017140294.1\|915482_916238_+	helix-turn-helix domain-containing protein	H6WBQ3	Rhodobacter_phage	1.7e-13	40.0
WP_011339624.1\|916594_916792_+	hypothetical protein	NA	NA	NA	NA
WP_011339625.1\|916788_917121_+	hypothetical protein	NA	NA	NA	NA
WP_017140295.1\|917353_917713_+	hypothetical protein	I3UM32	Rhodobacter_phage	4.0e-18	44.0
WP_011339628.1\|917731_918718_+	YfdQ family protein	H6WBP5	Rhodobacter_phage	7.5e-75	46.9
WP_017140296.1\|918814_918967_+	hypothetical protein	NA	NA	NA	NA
WP_017140297.1\|918953_919163_+	hypothetical protein	NA	NA	NA	NA
WP_023004254.1\|919165_919369_+	hypothetical protein	NA	NA	NA	NA
WP_011339629.1\|919361_920471_+	phage Gp37/Gp68 family protein	A0A0A8ILD3	Aurantimonas_phage	1.4e-85	50.1
WP_011339630.1\|920701_920956_+	hypothetical protein	NA	NA	NA	NA
WP_030002922.1\|921074_921413_+	DUF4326 domain-containing protein	A0A142K9N0	Gordonia_phage	4.9e-18	35.9
WP_011339632.1\|921718_922435_+	hypothetical protein	A0A0U2BXK1	Paracoccus_phage	3.5e-82	64.3
WP_114071702.1\|922678_923677_+\|integrase	site-specific integrase	A0A068CCA6	Rhizobium_phage	2.5e-09	24.4
923740:923785	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP030271

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP030271_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030271_1

2605583-2605685

Orphan

Consensus_repeat	Method
CGCGCGCCGATCGGAGCGCGGAGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030271_1

>merge|NZ_CP030271|1|2605583-2605685|CRISPRCasFinder
CGCGCGCCGATCGGAGCGCGGAGCTTTCACCACGCCGCACAGTCGGACGGGGCAGCCCGGGGACACGGCGGCCACCCGCGCGCTGATCGGAGCGCGGAGCTTT

>NZ_CP030271|1|1|2605583-2605685|CRISPRCasFinder
CGCGCGCCGATCGGAGCGCGGAGCTTT	CACCACGCCGCACAGTCGGACGGGGCAGCCCGGGGACACGGCGGCCACC
CGCGCGCTGATCGGAGCGCGGAGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030271.1\|WP_002721055.1\|2612700_2613306_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP030271.1\|WP_002721054.1\|2611625_2612468_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030271.1\|WP_017139961.1\|2615571_2616111_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377411
NZ_CP030271.1\|WP_011338540.1\|2599313_2599937_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP030271.1\|WP_011338545.1\|2605806_2607057_+\|BtaA-family-protein	unknown	unknown	gnl\|CDD\|378757
NZ_CP030271.1\|WP_011338546.1\|2607053_2607686_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP030271.1\|WP_002721056.1\|2613309_2613834_-\|DUF308-domain-containing-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP030271.1\|WP_002721037.1\|2598494_2599283_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP030271.1\|WP_002721035.1\|2597459_2598146_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP030271.1\|WP_011338548.1\|2610615_2611545_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP030271.1\|WP_011338544.1\|2604787_2605432_-\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|378238
NZ_CP030271.1\|WP_011338550.1\|2613897_2615325_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP030271.1\|WP_002721045.1\|2602563_2603394_+\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|131868
NZ_CP030271.1\|WP_011338543.1\|2603871_2604783_+\|ornithine-cyclodeaminase	unknown	unknown	gnl\|CDD\|180421
NZ_CP030271.1\|WP_017139959.1\|2609409_2610519_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP030271.1\|WP_002721044.1\|2601618_2602548_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP030271.1\|WP_011338541.1\|2600282_2601260_+\|membrane-protein	unknown	unknown	gnl\|CDD\|224548
NZ_CP030271.1\|WP_011338539.1\|2596218_2597307_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NZ_CP030271.1\|WP_011338542.1\|2603386_2603875_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|367134
NZ_CP030271.1\|WP_002721051.1\|2608091_2609045_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769

Protein	Function_ID	Function_description	E-value
NZ_CP030271.1\|WP_002721055.1\|2612700_2613306_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	6.37864e-137
NZ_CP030271.1\|WP_017139961.1\|2615571_2616111_+\|heme-binding-protein	gnl\|CDD\|377411	pfam04832, SOUL, SOUL heme-binding protein. This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologs.	1.92741e-52
NZ_CP030271.1\|WP_011338540.1\|2599313_2599937_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	3.06401e-40
NZ_CP030271.1\|WP_011338545.1\|2605806_2607057_+\|BtaA-family-protein	gnl\|CDD\|378757	pfam11899, DUF3419, Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.	8.65185e-145
NZ_CP030271.1\|WP_011338546.1\|2607053_2607686_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	3.4864e-21
NZ_CP030271.1\|WP_002721056.1\|2613309_2613834_-\|DUF308-domain-containing-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	1.12913e-12
NZ_CP030271.1\|WP_002721037.1\|2598494_2599283_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	7.73964e-104
NZ_CP030271.1\|WP_002721035.1\|2597459_2598146_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.26658e-70
NZ_CP030271.1\|WP_011338548.1\|2610615_2611545_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	8.44086e-09
NZ_CP030271.1\|WP_011338544.1\|2604787_2605432_-\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	1.62038e-18
NZ_CP030271.1\|WP_011338550.1\|2613897_2615325_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP030271.1\|WP_002721045.1\|2602563_2603394_+\|S-formylglutathione-hydrolase	gnl\|CDD\|131868	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. [Cellular processes, Detoxification].	7.60765e-144
NZ_CP030271.1\|WP_011338543.1\|2603871_2604783_+\|ornithine-cyclodeaminase	gnl\|CDD\|180421	PRK06141, PRK06141, ornithine cyclodeaminase family protein.	1.79506e-84
NZ_CP030271.1\|WP_017139959.1\|2609409_2610519_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP030271.1\|WP_002721044.1\|2601618_2602548_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.74447e-36
NZ_CP030271.1\|WP_011338541.1\|2600282_2601260_+\|membrane-protein	gnl\|CDD\|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	1.81823e-36
NZ_CP030271.1\|WP_011338539.1\|2596218_2597307_-\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	3.84811e-98
NZ_CP030271.1\|WP_011338542.1\|2603386_2603875_+\|YaiI/YqxD-family-protein	gnl\|CDD\|367134	pfam02639, DUF188, Uncharacterized BCR, YaiI/YqxD family COG1671.	1.39912e-56
NZ_CP030271.1\|WP_002721051.1\|2608091_2609045_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	7.08622e-18

>NZ_CP030271.1|WP_011338544.1|2604787_2605432_-|cytochrome-c-oxidase-assembly-protein
MSGTQSETGRQLAPGLLSLGVGLAALAGLWGGPLPDLARVSFVWHMMLHLGVILGAAPLIALGLARLAPLRTAWPVLFAGAASLLELAVVWGWHAPRLHEAAALDPTLFRIQQATFLGAGVLVWLPGLAPGRAAAGAGLLAMLFSLMHMTMLGVLLTLSPRLLYAPEICGTAFGLAPLDTQRLGGAMMAVAGLGPYLVGAAVFTMRLTREGPED
>NZ_CP030271.1|WP_011338543.1|2603871_2604783_+|ornithine-cyclodeaminase
MSIEIIGPEAEAHLSWDGLTTALTQGHKLPRAEVADIFLYRGKDTVLSRAAWIDGLGQLVKTATIFPGNGAAGKPTVNGAVTLYSDRDGTLEALVDFHLVTKWKTAGDSLLAAKRLARRDSREILLVGAGNVARSMIEAYGSHFPDARFTVWNRSADKARAMEGPQVRATEDLEAAVRAADIICTATMSQEPVVKGEWLKPGTHLDLIGAYRPDMREVDDEALRRATVFVDSRKTTIGHIGEIQDPLDRGILTEADIRADYYDLASGLYARRSDEEITLAKNGGGAHLDLMTASYIAAMWRQR
>NZ_CP030271.1|WP_011338542.1|2603386_2603875_+|YaiI/YqxD-family-protein
MTDLYIDADACPVKAEAERVAVRHGVRMFLVSNGGIRPPAHPLVESIFVPEGPDVADMWIADRARTGDVVVTSDIPLAAKVVAAGALVVKPNGETLTQANIGNALATRDLMADLRSADPFRQGGGRPFSKADRSRFLDALERAMRKAQEAGRSASGGNEAGS
>NZ_CP030271.1|WP_002721045.1|2602563_2603394_+|S-formylglutathione-hydrolase
MKTLSESRCFGGTQGVYSHTSQVTGCDMTFGLFLPPEAENEAVPLVWYLSGLTCTHENAMVKAGAQKWAAQEGLALVFPDTSPRGEGVPDDENYALGQGAGFYVNATEAPWSTNFRMWDYITEDLPRVLFSAFPLDESRQSIMGHSMGGHGALTIAMSFPGRFRSVSAFAPITHPTASDWGRKQLTAYLGTDESKWAPHDSVLLMRKRGFDGPILIDQGASDQFLDALKPEALAEAMMARRQQGIIRMQPGYDHSYFFVSTFMEDHIQFHAEALYD
>NZ_CP030271.1|WP_002721044.1|2601618_2602548_+|AEC-family-transporter
MLPVLLETLPFFALIGTGYMAGRMGMFTPEATAWLTKFVFYFALSAMLFRFAANLSLAEIWSLPFVAAYLAGSGAVYLLATLVARMRGVGTEVAAMEAQCAVIGNTGFLGVPMLVLLLGAGAAGPVLMMLSIDLIFFSSLITLIITGKREGHMSLRVVKVLALGLLRNPMIVSMVAGLGWSATGAAVPEPVNEFLALLGGAATPGALFAIGASLAGKSAERLEIAAWLSFCKLVLHPLSVAVAALAIFPVERQAAGVMIAAAALPVAGNVYILAQHYGVAPQRVSASILISTAVSILTITGVIAWVTTF
>NZ_CP030271.1|WP_011338541.1|2600282_2601260_+|membrane-protein
MFSSFSSRRRFRDLSDAEILALAISSEEDDARIYRSYADRLRAPYPGTAALFEAMAEEEDSHRRRLIGTFRDRFGETIPLIRREHVEGYPSRKPVWLLETLPLERVRREAWEMENAARSFYETAARHVTDASTRKLLGDLAAAEAAHEHRAERLAEEHLTDEATAAEDETARRQFILTWVQPGLAGLMDGSVSTLAPIFATAFATQDPATTFQVALAASVGAGISMGFTEAAHDDGVLSGRGAPWKRGLASGVMTTAGGLGHALPYLIPDFAWATGIAIAVVFFELWAIAWIQNRYMETPFLRAALQVVLGGGLVLAAGILIGFG
>NZ_CP030271.1|WP_011338540.1|2599313_2599937_-|TetR/AcrR-family-transcriptional-regulator
MPAETPPARKGRKMPQVLEGARTIFLRDGFEGASVDDIARAAGVSKATLYSYFPDKRLLFLEVAKAECLRQSEEAVALITADLAPRAVLTLAATRIVAFVLSDFGIRTYRICVAEADRFPELGHEFYESGPALVRQRIVDYLAQAVGRGELAIDDLELAADQFAELCKADLFNRIVFGVGNSVSEAERQKVAQGAVEMFLARYAPRP
>NZ_CP030271.1|WP_002721037.1|2598494_2599283_+|exodeoxyribonuclease-III
MTFTLATWNINSVRLREALVSRLLTEEMPDILCLQECKSPVEKMPLEAFRALGYHWCVARGQKSYNGVAILSKLPLVDAGDHDFADLGHARHVSAALENGVTIHNCYVPAGGDIPDREQNVKFGQKLDYLTRMRDWCRADTPKKAILVGDLNIAPREDDVWNHKSLLKIVSHTPIEVDHLNALMEAGAWIDVTRKDLPEGRLYSWWSYRSPDWEAADKGRRLDHIWATPDIVNAAHGSRILKAARGWLQPSDHAPVFATFDL
>NZ_CP030271.1|WP_002721035.1|2597459_2598146_+|response-regulator-transcription-factor
MASLKKILLVDDDDDLREALSEQLVMTEDFDVFEAASGAEGMEKAKAGLYDLVILDVGLPDTDGRELCRRMRKAGVKCPVLMLTGHDSDSDTILGLDAGANDYVTKPFKFPVLLARIRAQLRAHEQSEDAVFQLGPYSFRPAQKMLVDEKERKIRLTEKETNILKFLYRASQGVVAREVLLHEVWGYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESGGYRLVA
>NZ_CP030271.1|WP_011338539.1|2596218_2597307_-|GTP-cyclohydrolase-II
MSLSLGIVERLNRARGDLRMGVPVVLTEEGAGAVAVAVEALEPGRLADLRLLGEPVLAITARRAETLKARVYDDDLARIELPDAAGIEWLRAVADPADDLRLPMKGPLRALRGGGAGLARAALALAKSAHLLPAAVLVPVADPLRLAAQHALTVLPLEEARAELSRGSPLHPVVSARVPMVASQAGRVHVFRPEDGGEEHYAIEIGRPDRGLPVLARLHSACFTGDVLGSLKCDCGPQLRSALARMGEEGAGVLLYLNQEGRGIGLANKMRAYSLQDQGFDTVEANHRLGFEDDERDFRIGAGILRQMGFAAVRLLTNNPAKIRMMEANGIRVTERVPLHVGRNEFNAAYLATKAAKSGHLA
>NZ_CP030271.1|WP_011338545.1|2605806_2607057_+|BtaA-family-protein
MTQFALTHLPAPPVARQIGAAVHRTSLLSAEGLMERMFSRLFHGLVYPQIWEDPAVDMAALAIRPGDRLVAIASGGCNVLSYLTQGPGSILAVDLSPAHVALGRLKLAAARTLPDHAAFFDLFGRADLPGNAALYDRHIAPALDGRSRRYWEARSPFGRRIQLFERGFYRHGALGRFIGAAHTLARAAGTDLRGFLDCPDIEAQRSFFYAHIGPLFEAPVVQALARRPAALFGLGIPPAQYALLAGDGDGDVLPVLRQRLHRLLCDFPLRENYFAFQAIARRYPRPGEGALPPYLEPTAFETLRENAGRVQIENRSLTEALAAEPEESIHGFTLLDAQDWMTDAQLTALWRQVTRTAAPGARVIFRTGGAADLLPGRVPEEILGHWRADRAAGQAGHAADRSAIYGGFHLYRRRDA
>NZ_CP030271.1|WP_011338546.1|2607053_2607686_+|methyltransferase-domain-containing-protein
MTDATHAALMDATYRHQRRIYDVTRRHFLLGRDRLIAELDPPPGARVLEIACGTGRNLDLIGRRWPGCRLSGLDISQEMLASARARLGRRATLALGDATRFEALPLFGTDRFERIVLSYALSMIPDWREALREAALHLVPGGRLHVVDFGDQAGLPGWARAGLRGWIGRFHVTPRDDLGTALGETALGIGGYAEYRSLGGGYAILGTLTR
>NZ_CP030271.1|WP_002721051.1|2608091_2609045_-|DMT-family-transporter
MAKSNTRGALLALLAFAIYATHDVVVKVLGRDYTAVQILFFATLLGFPLASMMLMRDRADGNLRPRHPWWVLLRTCCIVTTGLCAFYAFSVLPLAQTYAILFTMPLLVTLLAIPLLGETIGLHRGAAIATGLLGVLIVLRPGAEPLSLGHAAALLAAVTSSLGSVIVRKIGQDERSVVLLLYPMVANFFVLGAALPFVYRPMPVEHLGMMGIIAAFSFVAMLLTITAYRMAEAVIVAPMQYSQMVWAAIFGWLIFGERSDVWTWVGAGVIIASGLYIVGRESRRNVSENRPASQTRLRPEVGLMPRLLRRRETRDTP
>NZ_CP030271.1|WP_017139959.1|2609409_2610519_-|3-isopropylmalate-dehydrogenase
MANPSLLILAGDGIGPEVMAEVKRIIGWFGEKRGVSFDVSEDLVGGAAYDAHGTPLADETMARAQEVDAVLLGAVGGPKYDVLDFSVKPERGLLRLRKEMDLYANLRPAQCFDALADFSSLKRDIVAGLDIMIVRELTSGVYFGEPRGIFPDNEGGRFGVNTQRYTTEEIRRVARSAFELARRRNNRVCSMEKANVMESGILWREEVQWVHDNEYPDVELSHMYADNGAMQLVRWPRQFDVIVTDNLFGDILSDCAAMLTGSLGMLPSASLGAPMANGRPKALYEPVHGSAPDIAGQGKANPIACILSFAMALRYSFDMGEEATRLEKAVETVLADGVRTADLMGPEGGTPVSTSGMGDAVLAALDASL
>NZ_CP030271.1|WP_011338548.1|2610615_2611545_-|endonuclease/exonuclease/phosphatase-family-protein
MDLERAGPGLLLRDIRAGKDPQILAVRRMIEALRADVLFLTGVDYDADLLAARALAGDLYPHLLALRPNVGRPTGIDLDGDGRLGGPGDAQGWGRFGGQGGMVLLSRLPLGLPRDFSDLLWADLPEANLPPMPPEARAVQRLASVGAWEVPLPRTGGPALKLLLWSATPPVFDGPEDRNGRRAGDEALFWARLLDGRLPFPAPEGPVLLMGKANIDPLAGDGPRAAIAALLAHPALQDPAPRGPDGSRATADFRADDGPGLLRTDYILPARGLPVTASGVLWPPPGDPLAAVAAQASRHRPVWVELDLP
>NZ_CP030271.1|WP_002721054.1|2611625_2612468_-|hypothetical-protein
MNVFSRLSGALLRASLVVLLLALPSVLLPGVGADGQQMVALAALFGGVLTLVEYNATYPGLVEFRDAPPFNRLRFALLLVMVLTLTLMQREASDPSALTALSARAAGAVGTAMDFAYSPVRLATLMLSDRATPEQTAVLRNAAGISYLIATAAVAMFVAVIRLNRWPSRNLAFNVWVNLPTFEATAGGDVVQRLLRDARFNLALGFLLPFLIPIAVKIGTSGLDPLTLASPQALVWITVAWAFLPASLLMRGVGMARIAEMIREKRRTGEVFGTRGLAPV
>NZ_CP030271.1|WP_002721055.1|2612700_2613306_-|3-isopropylmalate-dehydratase-small-subunit
MQEFTKVTGVAAPMPLVNIDTDMIIPKQFLKTIQRSGLGKNLFDEMRYNPDGSEIPEFVLNQPAYRDAQIIVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIVMPPEVVEVLMEDARRGANARMTVDLEAQTVTTSDGQSFPFQVDSFRRHCLMNGLDDIGLTLEKAASIDGFERDLATLRPWV
>NZ_CP030271.1|WP_002721056.1|2613309_2613834_-|DUF308-domain-containing-protein
MKGTSSLIVSGILALLGGIAALAFPLPVSLAVTVLAGCVFVASGAFGLWAAFSDRGMPSRGAAAFFSLVSLVAGVWMLANPLAGMVSLTLMLGALFLVSGVVRLGLSLATWRGTVMFWLMALSGLISAGLGLFILLRLPEASLVLLGTLVAVELIVMGATLVAMGFALRKSGNP
>NZ_CP030271.1|WP_011338550.1|2613897_2615325_-|3-isopropylmalate-dehydratase-large-subunit
MTAPRTLYDKIWDDHVVHQSEDGTCLLYIDRHLVHEVTSPQAFEGLRMTGRKVRAPEKTIAVPDHNVPTTEGRDTKIDNEESRIQVEALDKNARDFGINYYPVSDIRQGIVHIVGPEQGWTLPGMTVVCGDSHTATHGAFGALAHGIGTSEVEHVLATQTLIQKKSKNMKVEITGSLRPGVTAKDITLSVIGLTGTAGGTGYVIEYCGQAIRELSMEGRMTVCNMAIEGGARAGLIAPDEKTFAYVMGRPHAPKGAAWEAALAYWKTLFTDEGAQFDKVVTIRGEDIAPVVTWGTSPEDVLPITATVPAPEDFTGGKVEAARRSLEYMGLTPGQKLTDIKIDTVFIGSCTNGRIEDLRAAAEILKGKKVAPGMRAMVVPGSGLVRAQAEEEGLAQIFIDAGFEWRLAGCSMCLAMNPDQLSPGERCASTSNRNFEGRQGRNGRTHLVSPGMAAAAAITGHLTDVRDLMMAPAEPA
>NZ_CP030271.1|WP_017139961.1|2615571_2616111_+|heme-binding-protein
MNGAVDHKGYEQPTYDLEFAETATEIRRYGPYLVAEVTMAGDRSTAITRGFRVLARYIFGGNAESRRIEMTVPVSQLPAGEDLWTVRFTMPAVRSASLLPAPKDSRIRFVTVPPSRQAVRRFSGWPTDHALRRQAEGLAHWIAERGLPKREGPYFYFYDSPMTLPWQRRNEVAFGLGEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

216393 : 245676

Paracoccus_phage(26.67%)

tail,portal,transposase,head,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080588209.1\|216393_216618_+\|transposase	transposase	NA	NA	NA	NA
WP_023003513.1\|217914_219378_+	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_160384112.1\|219410_220208_+	hypothetical protein	NA	NA	NA	NA
WP_160384111.1\|220166_221243_-	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	9.2e-42	34.7
WP_011336892.1\|221246_221891_-	hypothetical protein	NA	NA	NA	NA
WP_011336893.1\|222104_222587_-	hypothetical protein	F8TVB7	EBPR_siphovirus	7.1e-10	47.0
WP_011336894.1\|222599_223409_-	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	3.8e-64	50.2
WP_011336895.1\|223462_224269_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	9.8e-81	56.6
WP_011336896.1\|224670_225669_+	PAS domain-containing protein	NA	NA	NA	NA
WP_011336897.1\|225681_226071_+	response regulator	NA	NA	NA	NA
WP_011336898.1\|226141_226459_-	hypothetical protein	I3UM16	Rhodobacter_phage	2.1e-23	58.9
WP_011336899.1\|226592_226931_-	hypothetical protein	NA	NA	NA	NA
WP_011336900.1\|226934_227252_-	hypothetical protein	NA	NA	NA	NA
WP_061350815.1\|227258_228743_-	hypothetical protein	A0A0S3UG21	Pseudomonas_phage	3.6e-12	30.2
WP_011336902.1\|228759_229650_-	hypothetical protein	NA	NA	NA	NA
WP_061350816.1\|229649_234656_-	hypothetical protein	A0A0U4JEA4	Pseudomonas_phage	9.5e-49	53.0
WP_017140045.1\|234718_234964_-	hypothetical protein	NA	NA	NA	NA
WP_017140046.1\|235038_235419_-	hypothetical protein	NA	NA	NA	NA
WP_011336906.1\|235415_235856_-	hypothetical protein	A0A2P1N076	Streptomyces_phage	2.5e-06	34.4
WP_011336907.1\|235865_236246_-	DUF3168 domain-containing protein	A0A0U2BX31	Paracoccus_phage	2.0e-28	55.6
WP_011336908.1\|236249_236417_-	hypothetical protein	NA	NA	NA	NA
WP_011336909.1\|236413_236887_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	1.1e-26	51.9
WP_011336910.1\|236883_237216_-\|head,tail	head-tail adaptor protein	A0A0U2BXJ0	Paracoccus_phage	2.0e-16	44.5
WP_011336911.1\|237212_237719_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011336912.1\|237723_238014_-	hypothetical protein	NA	NA	NA	NA
WP_011336913.1\|238146_239481_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	7.1e-52	37.4
WP_011336914.1\|239734_240478_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011336915.1\|240488_241448_-	S49 family peptidase	I3ULZ8	Rhodobacter_phage	3.0e-20	36.2
WP_017140047.1\|241444_242680_-\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	6.4e-23	25.8
WP_011336917.1\|242826_243699_-	EamA family transporter	NA	NA	NA	NA
WP_011336918.1\|244017_245676_-\|terminase	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	1.7e-79	32.3

DBSCAN-SWA_2

376989 : 386036

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011336989.1\|376989_379212_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.3e-114	40.9
WP_011336990.1\|379335_379857_-	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	4.6e-47	77.6
WP_011336991.1\|380070_380685_+	lytic transglycosylase domain-containing protein	A0A0S2SXL7	Bacillus_phage	3.8e-24	45.3
WP_009563716.1\|380797_382090_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	45.8
WP_011336992.1\|382196_382754_-	superoxide dismutase family protein	NA	NA	NA	NA
WP_002722646.1\|383045_383372_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.3e-19	54.4
WP_002722648.1\|383387_385052_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_002722650.1\|385061_386036_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.0e-52	42.3

DBSCAN-SWA_3

630642 : 667532

Paracoccus_phage(20.0%)

tail,portal,head,terminase,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011337174.1\|630642_631377_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011337175.1\|631392_631689_+	hypothetical protein	NA	NA	NA	NA
WP_023003546.1\|631695_632373_-	hypothetical protein	NA	NA	NA	NA
WP_011337177.1\|632514_632712_+	hypothetical protein	NA	NA	NA	NA
WP_017140100.1\|632806_633460_+	hypothetical protein	NA	NA	NA	NA
WP_011337179.1\|633928_634381_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011337180.1\|634619_635372_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_017140102.1\|636141_636585_+	hypothetical protein	NA	NA	NA	NA
WP_160384101.1\|637561_639058_+	hypothetical protein	NA	NA	NA	NA
WP_162791924.1\|639911_641051_+	SAVED domain-containing protein	NA	NA	NA	NA
WP_011337187.1\|641169_642381_+	hypothetical protein	NA	NA	NA	NA
WP_011337188.1\|642377_644183_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_160384100.1\|644250_644694_+	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_011337190.1\|644848_645346_-	hypothetical protein	F8TVB7	EBPR_siphovirus	5.6e-10	47.0
WP_011337191.1\|645358_646168_-	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	4.9e-64	50.0
WP_011337192.1\|646222_647029_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	1.6e-83	57.8
WP_011337193.1\|647332_648238_+	DMT family transporter	NA	NA	NA	NA
WP_011336898.1\|648308_648626_-	hypothetical protein	I3UM16	Rhodobacter_phage	2.1e-23	58.9
WP_017140105.1\|648762_649101_-	hypothetical protein	NA	NA	NA	NA
WP_011337195.1\|649104_649422_-	hypothetical protein	NA	NA	NA	NA
WP_011337196.1\|649428_650913_-	hypothetical protein	G8DH61	Emiliania_huxleyi_virus	1.6e-12	32.5
WP_017140106.1\|651819_656826_-	hypothetical protein	A0A0U4JEA4	Pseudomonas_phage	3.1e-47	52.5
WP_023003549.1\|656964_657210_-	hypothetical protein	NA	NA	NA	NA
WP_011337200.1\|657284_657671_-	hypothetical protein	NA	NA	NA	NA
WP_011337201.1\|657667_658111_-	hypothetical protein	A0A2P1N076	Streptomyces_phage	1.8e-07	33.3
WP_011337202.1\|658120_658501_-	DUF3168 domain-containing protein	A0A0U2BX31	Paracoccus_phage	3.8e-27	53.2
WP_011337203.1\|658504_659062_-	hypothetical protein	A0A0U2C0P4	Paracoccus_phage	2.9e-15	37.3
WP_011337204.1\|659061_659394_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011337205.1\|659390_659732_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011337206.1\|659728_660163_-	hypothetical protein	NA	NA	NA	NA
WP_011337207.1\|660233_661535_-\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	1.3e-79	43.1
WP_011337208.1\|661547_662387_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.4e-69	58.1
WP_011337209.1\|662383_663634_-\|portal	phage portal protein	M4QP41	Tetraselmis_viridis_virus	5.8e-80	40.3
WP_011337210.1\|663633_665343_-\|terminase	terminase large subunit	A0A2H4J559	uncultured_Caudovirales_phage	6.2e-133	41.9
WP_017140107.1\|665344_665707_-	hypothetical protein	NA	NA	NA	NA
WP_011337212.1\|665863_666763_-	AAA family ATPase	I3ULZ4	Rhodobacter_phage	3.9e-30	56.1
WP_011337213.1\|666869_667532_-	hypothetical protein	G8DGC1	Emiliania_huxleyi_virus	4.2e-37	40.6

DBSCAN-SWA_4

978156 : 987245

Azospirillum_phage(40.0%)

tail,portal,head,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017140144.1\|978156_979767_-\|terminase	terminase large subunit	B0VK29	Azospirillum_phage	2.1e-37	27.0
WP_011337420.1\|979766_980162_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_011337421.1\|980158_980473_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011337422.1\|980475_980892_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_017140145.1\|980884_981277_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	6.3e-09	40.5
WP_023003570.1\|981290_981602_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011337424.1\|981796_983269_+	hypothetical protein	NA	NA	NA	NA
WP_011337425.1\|983253_983604_-	HNH endonuclease	Q38456	Bacillus_phage	5.5e-20	48.9
WP_011337426.1\|983606_984203_-	hypothetical protein	NA	NA	NA	NA
WP_017140147.1\|984202_985738_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	5.0e-41	36.0
WP_011337428.1\|985734_986055_-	gene transfer agent family protein	NA	NA	NA	NA
WP_011337429.1\|986051_987245_-\|portal	phage portal protein	M1PLL1	Streptococcus_phage	1.5e-40	31.5

DBSCAN-SWA_5

1049751 : 1120317

Paracoccus_phage(23.53%)

tail,portal,head,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002719573.1\|1049751_1050477_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_011337476.1\|1050466_1051420_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002719575.1\|1051416_1051701_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_017140153.1\|1051809_1052349_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_114071680.1\|1052358_1055226_+	helicase	A0A248SJQ0	Salicola_phage	2.9e-26	28.6
WP_011337479.1\|1055231_1055528_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002719579.1\|1055582_1055921_+	ferredoxin family protein	NA	NA	NA	NA
WP_002719580.1\|1056200_1056710_+	CarD family transcriptional regulator	NA	NA	NA	NA
WP_017140155.1\|1056897_1057647_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_011337481.1\|1057728_1058745_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_002719583.1\|1058800_1060669_-	cation:proton antiporter	NA	NA	NA	NA
WP_011337483.1\|1060843_1063720_-	hypothetical protein	NA	NA	NA	NA
WP_002719585.1\|1063883_1064576_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_002719586.1\|1064621_1065914_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA
WP_011337485.1\|1066156_1066504_-	hypothetical protein	NA	NA	NA	NA
WP_002719588.1\|1066500_1066887_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	2.6e-07	33.1
WP_011337486.1\|1066864_1067782_-	protein-glutamate O-methyltransferase	NA	NA	NA	NA
WP_011337487.1\|1067778_1068237_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_011337488.1\|1068238_1070299_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_011337489.1\|1070306_1070675_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	9.8e-12	35.3
WP_011337490.1\|1070665_1070950_-	STAS domain-containing protein	NA	NA	NA	NA
WP_160384159.1\|1070946_1071369_-	chemotaxis protein CheD	NA	NA	NA	NA
WP_011337493.1\|1074087_1075875_-	hypothetical protein	NA	NA	NA	NA
WP_011337494.1\|1075978_1077661_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.9e-07	31.4
WP_002719598.1\|1077749_1078118_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.5e-12	38.5
WP_011337495.1\|1078114_1078444_-	STAS domain-containing protein	NA	NA	NA	NA
WP_050988678.1\|1078776_1080729_+	alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase	NA	NA	NA	NA
WP_011337497.1\|1080725_1084034_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA
WP_011337498.1\|1084030_1086217_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_011337499.1\|1086213_1088280_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_011337500.1\|1088276_1090055_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
WP_011337501.1\|1090051_1091869_+	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_011337502.1\|1091865_1094481_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA
WP_011337503.1\|1094539_1095205_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002719608.1\|1095324_1096788_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.2e-47	32.0
WP_002719609.1\|1096872_1097487_-	CvpA family protein	NA	NA	NA	NA
WP_002719610.1\|1097505_1098864_-	DNA repair protein RadA	NA	NA	NA	NA
WP_002719611.1\|1098996_1099422_-	paraquat-inducible protein A	NA	NA	NA	NA
WP_002719612.1\|1099422_1100169_-	ATP-binding cassette domain-containing protein	F2Y1V5	Organic_Lake_phycodnavirus	8.7e-07	25.6
WP_049763397.1\|1100165_1100900_-	ABC transporter permease	NA	NA	NA	NA
WP_011337504.1\|1100944_1101994_-	alanine racemase	NA	NA	NA	NA
WP_002719615.1\|1102222_1102960_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_002719616.1\|1103138_1103372_+	acyl carrier protein	I1TR04	Pseudomonas_phage	7.3e-05	43.9
WP_011337505.1\|1103869_1105132_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_017140158.1\|1105131_1106310_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_011840819.1\|1106380_1106824_+	hypothetical protein	NA	NA	NA	NA
WP_023003587.1\|1106816_1108115_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	1.3e-71	41.7
WP_011337509.1\|1108187_1109363_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.5e-58	38.3
WP_002719622.1\|1109364_1109598_+	hypothetical protein	NA	NA	NA	NA
WP_043764141.1\|1109608_1110166_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.4e-30	49.3
WP_011337511.1\|1110231_1111428_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	3.6e-63	42.2
WP_011337512.1\|1111522_1112122_+	hypothetical protein	NA	NA	NA	NA
WP_011337513.1\|1112121_1112457_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_011337514.1\|1112453_1112852_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_002719628.1\|1112889_1113303_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_017140161.1\|1113620_1113821_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_017140162.1\|1113813_1114464_+\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	3.3e-10	28.1
WP_011337517.1\|1114473_1115106_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	6.1e-62	51.9
WP_011337518.1\|1115105_1115990_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	7.2e-61	43.6
WP_009564474.1\|1115986_1116427_+	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.5e-27	47.1
WP_011337519.1\|1116426_1120317_+	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0B5A7K5	Paracoccus_phage	2.3e-220	37.6

DBSCAN-SWA_6

1655985 : 1694645

Paracoccus_phage(36.36%)

tail,tRNA,portal,head,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011337883.1\|1655985_1657026_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_011337884.1\|1657111_1660396_-	hypothetical protein	NA	NA	NA	NA
WP_002720132.1\|1660486_1660948_+	peroxiredoxin	NA	NA	NA	NA
WP_011337885.1\|1661358_1662702_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	1.5e-20	46.7
WP_011337886.1\|1662691_1663210_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_011337887.1\|1663405_1664182_-	DUF2189 domain-containing protein	NA	NA	NA	NA
WP_002720136.1\|1664551_1665679_-	peptide chain release factor 2	NA	NA	NA	NA
WP_011337888.1\|1665787_1668337_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_011337889.1\|1668428_1669664_-	N-acetylmuramoyl-L-alanine amidase	C8CHK8	Thermus_virus	4.8e-10	37.9
WP_011337890.1\|1669712_1670864_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_011337891.1\|1671031_1671775_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_011337892.1\|1672110_1673244_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_017140227.1\|1673374_1674589_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011337894.1\|1674699_1675923_-	5-aminolevulinate synthase	V5LQ39	Emiliania_huxleyi_virus	3.6e-34	29.1
WP_011337895.1\|1676057_1676627_-	hypothetical protein	NA	NA	NA	NA
WP_017140228.1\|1676856_1678230_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_011337897.1\|1678226_1678670_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_023003635.1\|1680085_1680418_+	hypothetical protein	NA	NA	NA	NA
WP_162791925.1\|1680450_1683912_-	hypothetical protein	A0A0U2C146	Paracoccus_phage	3.9e-102	37.4
WP_023003639.1\|1684067_1684493_-	hypothetical protein	S4TR39	Salmonella_phage	1.3e-10	31.4
WP_023003640.1\|1684542_1685217_-	hypothetical protein	A0A0U2C133	Paracoccus_phage	7.1e-16	32.6
WP_011337903.1\|1685225_1685870_-	hypothetical protein	NA	NA	NA	NA
WP_023003642.1\|1685873_1688195_-	hypothetical protein	A0A2H4PI09	Pseudomonas_phage	8.6e-21	29.6
WP_023003646.1\|1688599_1688932_-	hypothetical protein	NA	NA	NA	NA
WP_011337905.1\|1689058_1689544_-	HNH endonuclease	Q6XQ94	Escherichia_phage	4.2e-18	39.5
WP_023003648.1\|1689709_1690129_-\|tail	phage major tail protein 2	NA	NA	NA	NA
WP_023003649.1\|1690192_1690561_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_023003651.1\|1690566_1691031_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	4.1e-15	34.0
WP_162129770.1\|1691031_1691313_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011337909.1\|1691350_1691692_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011337910.1\|1691715_1692825_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_011337911.1\|1692897_1693422_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.0e-30	50.6
WP_011337912.1\|1693418_1694645_-\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	7.5e-32	30.8

DBSCAN-SWA_7

1909217 : 1926862

Bacillus_phage(50.0%)

tRNA,portal,head,terminase,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011338055.1\|1909217_1909862_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_002720338.1\|1909810_1910182_-	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_002720339.1\|1910178_1910649_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002720340.1\|1910648_1911023_-	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_061350849.1\|1911147_1912413_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.0e-133	58.4
WP_002720342.1\|1912537_1913170_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	5.2e-61	61.0
WP_011338057.1\|1913336_1913945_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_011338058.1\|1914059_1915265_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011338059.1\|1915261_1916950_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_011338060.1\|1916946_1917591_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_002720349.1\|1917723_1918194_+	CAP domain-containing protein	A0A0E3T7R5	Bacillus_phage	4.3e-12	34.4
WP_011338061.1\|1918270_1919590_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_011338062.1\|1919630_1920542_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_017140245.1\|1920846_1921125_+	hypothetical protein	NA	NA	NA	NA
WP_011338064.1\|1921137_1921644_-	hypothetical protein	NA	NA	NA	NA
WP_011338065.1\|1921679_1922186_-	hypothetical protein	NA	NA	NA	NA
WP_011338066.1\|1922187_1923249_-\|portal	phage portal protein	NA	NA	NA	NA
WP_011338067.1\|1923250_1923805_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_017140247.1\|1923804_1925067_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_011338069.1\|1925051_1925393_-	HNH endonuclease	A0A0S2GLI5	Bacillus_phage	3.7e-05	32.5
WP_017140248.1\|1925383_1926862_-\|terminase	terminase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP030273

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP030273_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030273_1

67197-67275

Orphan

Consensus_repeat	Method
TTGTTTCGCGCGCGAAACAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030273_1

>merge|NZ_CP030273|1|67197-67275|CRISPRCasFinder
TTGTTTCGCGCGCGAAACAAATCGGGGGGTCGGCAGGGCGGCACGGCGGGGGCAAATTGTTTCGCGCGCGAAACAAATC

>NZ_CP030273|1|1|67197-67275|CRISPRCasFinder
TTGTTTCGCGCGCGAAACAAATC	GGGGGGTCGGCAGGGCGGCACGGCGGGGGCAAA
TTGTTTCGCGCGCGAAACAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030273.1\|WP_002724812.1\|59678_60569_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP030273.1\|WP_011836183.1\|58921_59704_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|366246
NZ_CP030273.1\|WP_050988687.1\|65774_67181_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274585
NZ_CP030273.1\|WP_009565041.1\|62457_63021_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP030273.1\|WP_011836245.1\|72289_74545_+\|glycoside-hydrolase-family-99-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379549
NZ_CP030273.1\|WP_011836179.1\|67305_68421_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274586
NZ_CP030273.1\|WP_011836241.1\|80196_81519_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030273.1\|WP_002724637.1\|56791_57628_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP030273.1\|WP_011836182.1\|60565_61417_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NZ_CP030273.1\|WP_011836242.1\|79139_80081_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP030273.1\|WP_002724800.1\|68719_69541_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP030273.1\|WP_017140428.1\|69557_70697_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226055
NZ_CP030273.1\|WP_011836181.1\|61413_62454_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP030273.1\|WP_011836184.1\|57829_58555_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_CP030273.1\|WP_011836243.1\|77656_78958_+\|DUF2793-domain-containing-protein	unknown	unknown	gnl\|CDD\|371324
NZ_CP030273.1\|WP_009565051.1\|74545_75538_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030273.1\|WP_002724803.1\|64073_65036_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NZ_CP030273.1\|WP_011836244.1\|75695_77054_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|226081
NZ_CP030273.1\|WP_002724804.1\|63084_64023_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039
NZ_CP030273.1\|WP_002724798.1\|71425_72226_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596

Protein	Function_ID	Function_description	E-value
NZ_CP030273.1\|WP_002724812.1\|59678_60569_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.32712e-162
NZ_CP030273.1\|WP_011836183.1\|58921_59704_+\|sulfotransferase	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	7.28903e-11
NZ_CP030273.1\|WP_050988687.1\|65774_67181_+\|AAA-family-ATPase	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	4.83014e-59
NZ_CP030273.1\|WP_009565041.1\|62457_63021_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	5.08975e-99
NZ_CP030273.1\|WP_011836245.1\|72289_74545_+\|glycoside-hydrolase-family-99-like-domain-containing-protein	gnl\|CDD\|379549	pfam14307, Glyco_tran_WbsX, Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases.	9.36814e-151
NZ_CP030273.1\|WP_011836179.1\|67305_68421_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|274586	TIGR03454, partition_RepB, plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions].	9.68349e-12
NZ_CP030273.1\|WP_002724637.1\|56791_57628_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP030273.1\|WP_011836182.1\|60565_61417_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	1.37587e-123
NZ_CP030273.1\|WP_011836242.1\|79139_80081_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	2.71163e-15
NZ_CP030273.1\|WP_002724800.1\|68719_69541_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.78218e-89
NZ_CP030273.1\|WP_017140428.1\|69557_70697_-\|sugar-transporter	gnl\|CDD\|226055	COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	1.37396e-72
NZ_CP030273.1\|WP_011836181.1\|61413_62454_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP030273.1\|WP_011836184.1\|57829_58555_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	2.53227e-11
NZ_CP030273.1\|WP_011836243.1\|77656_78958_+\|DUF2793-domain-containing-protein	gnl\|CDD\|371324	pfam10983, DUF2793, Protein of unknown function (DUF2793). This is a bacterial family of proteins with unknown function.	3.80205e-32
NZ_CP030273.1\|WP_002724803.1\|64073_65036_-\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	2.32126e-121
NZ_CP030273.1\|WP_011836244.1\|75695_77054_-\|sulfotransferase	gnl\|CDD\|226081	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown].	4.52734e-49
NZ_CP030273.1\|WP_002724804.1\|63084_64023_-\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.06441e-72
NZ_CP030273.1\|WP_002724798.1\|71425_72226_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.5419e-33

>NZ_CP030273.1|WP_050988687.1|65774_67181_+|AAA-family-ATPase
MRKSPPAREPQVPLPPYFNISPDAALAELEAPLTTAGFAEIARSCAQGRDDLAARGLDAEGRRSLRLFSTWEITRYLIPVATAHFRRVLKANPDLPQGISETEGGAKWFTLDEVLRLRAHFAAEGSKAKEYRPYRPAGLPAKLVAVANFKGGVGKTSTAAHLAMSAALDGYRVLVIDLDSQGSMTSIFGGRVADEWGTVFPLLARHYAAHLQAENRARVARGDPPVPMDETLTEAQKIRAGDLIAKTHWPNIDLIGAQLNLYWAEFQIPVWRMQGRSWKLWDALTDVLAEDGVLDRYDVIFLDTPPALGYLTINGLAAADILLVPLGASFLEFDSTGRFFDMLHSTFRSIEEGENIAARALGREELAFEWDAVRAVLTRYDGAQQAEMAALMQAYMGRTMAPERQDFTALIGQAGEQVNGIYEADYRDFNRDTYIRGRETFDATYAAFKRLLVGIWRREELAAADAAE
>NZ_CP030273.1|WP_002724803.1|64073_65036_-|replication-initiator-protein-A
MADFFICDILDALPKDDMASMEHPVFSLATRPDLRVLDYAHNGVRITVTPSVRGLATLFDKDILIYCVSQLMAALNAGRAISRTLHLTAHDLMTATHRETSGDGYQRLREAFERLAGTRITTNMEVGGREITTGFGLIESWQIVRRSRGGRMVQVMVTLSEWLFQAVLTKSVLTLSRDYFRLRKPLERRIYELARKHCGQQPEWRVSIATLAKKSGSASPLRVFRKMIRDMIAADSLPGYSLAEEPGDLLCVTRRAAVLAPGLAPALRDTTLERVRARMPGWDVHALVAEWHAFWHSSGQPRLRSADAAFLGWIERRVPG
>NZ_CP030273.1|WP_002724804.1|63084_64023_-|glycosyltransferase
MTDAPPPRIALLLATYNGAANLEAQLESFAAQTLRPTWLVVSDDGSTDATRALLAAFAARHPWLALRLVEGPCRGSAQNFLHLLGQVPPEADMAALSDQDDVWLPEKLARGAAAMADLPADLPVLYGGSSWICDAELGNRRPYPLPVRPPGFRHALVQNIAGGNTMMLNRGAIALLAAASREPERIVVHDWWIYQIVSGAGGRVIFDPVPLLLYRQHGGNLIGANDGFRAKYRRLRMLLSGGFRQWNAINIRALSASAHRFTPENRRLLAEFEALRRAGPWGRLRQLKRIGLYRQGLPGRLSLWLAAVLGRI
>NZ_CP030273.1|WP_009565041.1|62457_63021_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MQIEETELPGVLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAPPHAQDKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREPDTVVLYKTTDVYAPDCDGAVHFADPDLGIDWGIDPASAVLSDKDARAPRFADWTSPFSIEV
>NZ_CP030273.1|WP_011836181.1|61413_62454_-|dTDP-glucose-4,6-dehydratase
MKLIVTGGAGFIGSAVVRKAVADGHHVVNLDCLTYAACLDNLASVAGAPNYVFEKADIRDAEAMARIFATHRPDAVMHLAAESHVDRSIDGPGAFIDTNVRGTYVLLEAARAYWVGQGKPQGFRFHHISTDEVFGTLGETGQFTEETPYAPNSPYSASKAASDHLVRAWGETYGLPYVLTNCSNNYGPFHFPEKLIPVVILKALAGAPIPVYGKGENVRDWLYVEDHADALLTVLARGENHRSYNIGGENEAKNIDIVRKICAILDARRPKATPYADQIAFVTDRPGHDLRYAIDPTRIRTELGWRPSVTLDEGLERTVDWYLANEPWWRALQDRAGVGERLGVKA
>NZ_CP030273.1|WP_011836182.1|60565_61417_-|dTDP-4-dehydrorhamnose-reductase
MILVFGRTGQVARELARQAPDARFLGRDEADLADPEACARAIREAKPDAVINAAAWTAVDRAEEEEAPATVVNGEAPGAMARACAELGIPFVQISTDYVFDGSGTRPWQPGDPVGPLGAYGRSKLAGEEAVRAAGGPHAILRTSWVFSAHGANFVKTMLRLGATRDRLTVVCDQVGGPTPAADIAAACLAMARGLAARPDLSGTYHLSGGPDVSWADFAREIFRQAELDCLVADIASADYPQKAHRPANSRMDCSDLARFGLSRPDWRQGLARVLADLQEVSE
>NZ_CP030273.1|WP_002724812.1|59678_60569_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MSVRKGIILAGGSGTRLYPLTIGVSKQLMPVYDKPMIYYPLSVLMLAGIREIAIITTPQDQEQFRRALGTGAQWGISLTYLVQPRPEGLAQAYTIAEEFLAGSPSCMVLGDNIFFGHGLPDLLALADAKTEGGTVFGYHVADPERYGVVAMDERGRVTQIVEKPKVAPSNYAVTGIYFLDARAPDLVHGIRPSERGELEIVSLLEIYLEEGLLDVQRMGRGFAWLDTGTHASLLDAGNFVRTLQLRQGMQTGCPEEIAFARGWVDAEALTGMAAQLSKNDYGRYLQGLLTDRMMEG
>NZ_CP030273.1|WP_011836183.1|58921_59704_+|sulfotransferase
MRAASPRVRFLVAGAQKCGTTALHRFLSAHPGLFLPAGKELHFFDRPLPDDWSGPEGPLYETAFAQARPDQLCGEATPVYLFHTPSLQRIRAYNPAMRLILLLRDPVLRAYSHWRMERTRGAETLPFPEAIRAGRARVAEDWRTFSYVERGFYGAQLTELERLFPREQRLVLWTDEMQRDHAGTLARIWRFLGCAAPPVPPPPAEIRPLDPAPGLAPLAEEDARYLRSLYAPDIALTEALTGRDLSLWREGALSPPSSGR
>NZ_CP030273.1|WP_011836184.1|57829_58555_+|sulfotransferase
MDRDLPETPALVLGASGGSGTRVAGQLLRAAGGYLGGARNEAGDSLALVAAIEALAARGARLLEGGRPEEADLALWRAALTEHLALHAGEPFWGWKNPRSMFLLPFSVALVPGLRFIHMVRDGRDMALSGNRRQYERHVPEGPGTPADRARFWAESNLRVKRHAEAVLGDRYAILRFEDLCRDPEGCMARLGRQFGLRLEPAGTGIEVRPPDGVGRHRALPAADRAAVEAAAAPAMEAFGY
>NZ_CP030273.1|WP_002724637.1|56791_57628_-|3-deoxy-8-phosphooctulonate-synthase
MTETPTIVTIGDIAIGGGHPIALITGPCQLESLDHARMMAERIAEACAPTGTKFIFKASYDKANRSSLSTARGLGMEKGLEILGRIREEFGVPVLTDVHEPGHCATAAEVCDVLQIPAFLCRQTDLLLAAGETGRAVNVKKGQFLAPWDMKNVADKVASTGNRRILLCERGTSFGYNTLVTDFRGLPTMAATGWPVVFDATHSVQQPGGLGGSSGGQREFAPVLARAACAVGVSALFIETHEDPDRAPSDGPNMIPVDRMGRLIADLCAFDALAKSLA
>NZ_CP030273.1|WP_011836179.1|67305_68421_+|ParB-N-terminal-domain-containing-protein
MAKRKRLTLPPLGGFAPGPASASEASPAPASPPALGPGLAPAPISRVTGEAAATAALREVAEELGAARSEGRLVLRLELDRIEEGWLVRDRIGLEAEELASLMTSLSAHGQRSPIEVTDMGEGRFGLISGWRRVTALRRLHAETGEERFATVLALLRRPDTAAAAYVAMVEENEIRAGLSYFERARIAAKAVEAGVFATDKLALQQLYGSASRAKRSKIGSFLGIYRALEGALRYPSALPERLGLALARRLEEEPGVAAKITAALAAAAPDSAEAELALIADLLAPAAEAAPEQEPARPSAPDPAPDAPAPAPAPDPAPAQPRSTRPPAPAAELRPGLFLKAEGAGSLHLYGPAVDETFRARLRDWLASEG
>NZ_CP030273.1|WP_002724800.1|68719_69541_-|ABC-transporter-ATP-binding-protein
MIELRNVSKSYVLNGTRKVVARDLNFTFPSGESVGLLGRNGAGKSSLLRMLAGTMLPDTGEILSSGTISWPVGFSGSFHPELTGAQNVRFVARLYGVDTEAMIAFVRDFAEIGQHFHLPVRSYSSGMRSRLAFGISMAVPFDTYLIDEVTAVGDAAFSAKSNAILRARLEESGAVIVSHSMPLLKKLCRSGAVLHDGQLFYYERIEQAIRHHESMMRGALPRWMRGDLDEGEGEEAGAAAPGPRARARAGAARAGGGRAARPGPASGTSEPRG
>NZ_CP030273.1|WP_017140428.1|69557_70697_-|sugar-transporter
MPAAAPRAAARLRHHGLLASFLGLVLAPILASGLYLFAIAEDQYTSTVGFSVRTEEMGSALDLLGGLSSFGLTGGGSASDSDILYQFIQSQELVQRINERIDLRAIYSKPGFDPVFSFDPDGGIEDLVDYWKDMVRISYDSTTGLIELRVHAFTPEDAQAVAQGILDESNRMINDLSAIARADATRYAREELDNAVERLRVQRVAMTEFRSRTQIVDPSADIQAQMGLLNTLQQQLASASIDLNLLRQTTQPSDPRIAQNERRIGVIEELIQREREKFGLGGGTGTGASTYSTMIAEFERLTVDLDFAEKAYIAALTNHDAAIAEAQRMSRYLATYVRPTLAQQSLYPQRGLLTLMIGGFALMLWAIGMLIYYSVRDRR
>NZ_CP030273.1|WP_002724798.1|71425_72226_+|ABC-transporter-permease
MTGLSGLLAGRRFLWGRSVLSLMLREMATSYGRSPGGYLWAVAEPVAALTLLTVVFSFLMRSPPLGNNFPLFYATGYLPFMYYTALTAKIGQAIRFSRPLLAYPAVSFFDAILSRFLLNTLTNLVVFVIVMVGIIAFYDLNVSLDLPAILEAFSMAAALAMGVGTLNCYLFSVAPVWERVWAILNRPMFLLSGIFFLMETVPEPFRTLLSYNPLTHVIAKMRQGFFATYDARLVDPLYAYSVSLVCLFFGMLLLNRHHRMLLNEGA
>NZ_CP030273.1|WP_011836245.1|72289_74545_+|glycoside-hydrolase-family-99-like-domain-containing-protein
MLKFHRLRRFARILVLTGEERRYLRAIRKSGLFDRTYYRGAYPGLNPIYLKYPEKHYIAYGERLGYRPNPDFSPQAYLRYHPDVAEAGVPPFLHYVRVGHAEQRLTKELPEVVALPARGMPQVRFEHGRQTAPYAVAVHVYYPDLWPEFAARLRRLRIPFDLYVTLTYRGEETDALAEEIRADFPGAFVTPMPNRGRDILPFVTLLNAGAFDGYRAVCKFHTKKSPHRQDGDLWRKHLIEGILPETGLEEKLEAFVEAPEAGFWVADGQHYTGTQWWGSNVEATRHLLQRIEIPLDREALSFPAGSIYWVKPLVLGLLRSLQLRLEDFDLEEGQVDGTLAHAIERVLGYLTARAGQKVLQTSELRPAAAAAPAKPAFVSAFYLPQFHPVPENDAWWGKGFTEWRSVVKAPSMFEGHLQPMLPADLGFYDLRATEVMGEQAAMAREAGIDAFCVYHYWFDGRRILEAPIDRLMARPEIDFPFYLCWANESWRRNWDGLSGTVLLEQTYGAGFEEKLAADTAPYLRDPRYARPDGRRPRFVIYRPEDMPDPQASVARLREGWRRAGIGEVELGAVRFHVEGAHPVPEGLFDFWVEMPPHGLVKGPDYLFGGPDGNRMPAAMNPAFSGLIYDYAAVARRALSETYVRTLPKATIAGVMPGWDNTARRGAAGHVAYGANPATFNVWLAGALERRVPASYRRELFVNAWNEWAEKAVLEPSLTFGDLNLQVMRQHLGAAEPATHLAEPPAHGMRSH
>NZ_CP030273.1|WP_009565051.1|74545_75538_+|hypothetical-protein
MARVVLHIGTHKTATTTIQDMFAHNADLLRQHGVIYPRLSRVAGHHGLVMEWNKLPDMYALPQGSIATLKQLTRDYAHVPGTLVLSSEEFSRGKPGAQVDFRAVRELLSDFESVSVVCVLREQWQFMQSIYLQASKERQPPKPSTMVDSVLKRDMTDGLWIDYNLLYDHLLSAFAPEEITFLDFDACRRHRDGVVGAMLDTLGCGLSASSLQVVHDGLSNVSPLALPTFAACVITEPDQAAPWVIDCATGAFRIEYGEEAKSCLWTYPEFQQLFAYAKERNGRLSERRKAVQPEFRISESDPEENRVYRDGLNTSFWIRCSRWIYRARRG
>NZ_CP030273.1|WP_011836244.1|75695_77054_-|sulfotransferase
MTSDQTPARPALLVLGMHRSGTSALAGVLGRAGFALPQELMPPTEHNPRGYFESTRIFRLNDALLAAAGSSWDDWRAFDADWHLSPAAEPFHAEAQEALAAEFPGTAPIVLKDPRICRLLPFWTRALTEAGFRPLAVCTHRPAREVGASLARRNGWPEARGLLLWLRHVLDAEAQTRGRPRVFVSYDGLLADWRGTLGRIAEAFDLALPRPLDEAAPEIEAFLSADLRHAPETPAAAAGLSDWIARPEEILDRKAAGEDRPGDRETLDRIAAEVAAAAPLLADLSGAVEEQGARLEREAALRHEAQTILQQERQRLDDLTAELQLQLHHRTLHVAELERHAGELAQQLRQKTQHAAELERHAEELAQQLRQQRSHAAELERHAGELSALTHELRQQVHHKGRHVQELEAHSGELEARLLALEAEHAALLGSTSWKVTHPLRRMSLALRRPKT
>NZ_CP030273.1|WP_011836243.1|77656_78958_+|DUF2793-domain-containing-protein
MSDASPILSLPYILPSQAQKHVTHNEALQRLDVLVQPAVLDRDRSAPPAAPAAGARHLVGPGAEGAWAGREEAFAVWDAEAAVWRFLAPQPGWQTFVLAEGAGLVFTAQGWRTLIGLLPEFPSLGIATSADATNRLAVAGPATLFTHAGASHRIKVNKAAEAETASLLFQSDWSGRAEIGLAGSDDFALKVSPDGTSFRTALSADRASGRVALPQGAVVTGSLTGSAVQASAADATPGRLLTVGAFGLGAPAPLVGNAGAVDGALAPGFYGYDSAQGSSGGPAGVQAGLLLHQSRGAGEVQLFLVEAGGGGLMPGILFSRARGEGAWSPWVAGGIVESAGNANGRYIRHQDGTQSCWQKVTTSASADVVAPFPAAFSTATGLVTVSSVVSNGAQALSPRLTGRTTTSVGVSVFSATNTRLAAQVELISMGRWY
>NZ_CP030273.1|WP_011836242.1|79139_80081_+|calcium-binding-protein
MPEVSPFPSLSPLSAPLAQSALAQTPAGTPGNDLLNGGPGADRLVGGDGNDTINGRDGVDRLYGGDGDDLLDGGFYHDACYGQAGNDTFRIRGVDLADDVYGGAGTDTLDLSGYTNLRLGFRVDLAAGRYDFRPEPFGPYVVKSIEIVIGSARADVLLGSRLAETLSGGLGNDRLEGRGGADVLRGMEGADALFGGTGNDLLLGGAGNDRLDGQWERDVLVGGAGNDILIGGGGADRFVFAGNFGRDRIRDFSPDMEGEWIDLRGVGAITGFGDLMANHLSEVNGHVVIEVGANRITLEGISSEMLTRDDFLF
>NZ_CP030273.1|WP_011836241.1|80196_81519_+|hypothetical-protein
MTLLRTTLLTALLSLALGAGAEAAPEAIYGPGPRALDNREIFAAANLPLWQELDRAGVEGIVLNASFLMTTDFRGIGAKGEKRRPDDTYLTDADLGGLAAIVARTGLQVTYEAGVGLSGARCDASLSPEALGRAAAAFEFERNVRRLTDAGIPVSAINVDGPMLRLLPDSDKPAGCRETAGAGFDVRSAGQIVHAYMVELRDRIEAAQEKQTVQVRWLVNLPLWQVGRVPRNPVYSEPTPDAKPTTDLTDAVRSLAKAQAEQELPGRALEIAEVVIGYPYSMGKQNPNRYAIRVRNLWLSSRALNPRSGHPPPLGFIVNTHSYLNPCLKREGRPDVAFLTFRRGKGSVSEACQRAQIGEDTVANAQDGAMDNDADYLRDSFTYADELSPGGELARQLVLRDGTRIADHVAHIYYQSWGVNPLSNAWYMERLIERLEHGDR

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Crispr_ID: NZ_CP030273_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030273_2

75942-76028

Orphan

Consensus_repeat	Method
CTGCCGGAGCTGCTGGGCGAGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030273_2

>merge|NZ_CP030273|2|75942-76028|CRISPRCasFinder
CTGCCGGAGCTGCTGGGCGAGCTCTTCCGCATGGCGCTCGAGTTCGGCCGCGTGCTGCGTCTTCTGCCGGAGCTGCTGGGCCAGCTC

>NZ_CP030273|2|2|75942-76028|CRISPRCasFinder
CTGCCGGAGCTGCTGGGCGAGCTC	TTCCGCATGGCGCTCGAGTTCGGCCGCGTGCTGCGTCTT
CTGCCGGAGCTGCTGGGCCAGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030273.1\|WP_011836236.1\|86974_88369_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP030273.1\|WP_050988687.1\|65774_67181_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274585
NZ_CP030273.1\|WP_017140428.1\|69557_70697_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226055
NZ_CP030273.1\|WP_011836238.1\|83494_84499_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187563
NZ_CP030273.1\|WP_011836245.1\|72289_74545_+\|glycoside-hydrolase-family-99-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379549
NZ_CP030273.1\|WP_017140431.1\|84783_85047_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030273.1\|WP_011836240.1\|81608_82298_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030273.1\|WP_011836179.1\|67305_68421_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274586
NZ_CP030273.1\|WP_011836235.1\|88365_88806_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP030273.1\|WP_002724803.1\|64073_65036_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NZ_CP030273.1\|WP_011836241.1\|80196_81519_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030273.1\|WP_002724800.1\|68719_69541_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP030273.1\|WP_009565041.1\|62457_63021_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP030273.1\|WP_002724798.1\|71425_72226_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP030273.1\|WP_011836243.1\|77656_78958_+\|DUF2793-domain-containing-protein	unknown	unknown	gnl\|CDD\|371324
NZ_CP030273.1\|WP_009565051.1\|74545_75538_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030273.1\|WP_011836242.1\|79139_80081_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP030273.1\|WP_041671156.1\|88874_89168_+\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP030273.1\|WP_011836239.1\|82322_83375_-\|sulfotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|366246
NZ_CP030273.1\|WP_002724804.1\|63084_64023_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039

Protein	Function_ID	Function_description	E-value
NZ_CP030273.1\|WP_050988687.1\|65774_67181_+\|AAA-family-ATPase	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	4.83014e-59
NZ_CP030273.1\|WP_017140428.1\|69557_70697_-\|sugar-transporter	gnl\|CDD\|226055	COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	1.37396e-72
NZ_CP030273.1\|WP_011836238.1\|83494_84499_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.34107e-167
NZ_CP030273.1\|WP_011836245.1\|72289_74545_+\|glycoside-hydrolase-family-99-like-domain-containing-protein	gnl\|CDD\|379549	pfam14307, Glyco_tran_WbsX, Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases.	9.36814e-151
NZ_CP030273.1\|WP_011836179.1\|67305_68421_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|274586	TIGR03454, partition_RepB, plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions].	9.68349e-12
NZ_CP030273.1\|WP_002724803.1\|64073_65036_-\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	2.32126e-121
NZ_CP030273.1\|WP_011836235.1\|88365_88806_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	9.00245e-61
NZ_CP030273.1\|WP_002724800.1\|68719_69541_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.78218e-89
NZ_CP030273.1\|WP_009565041.1\|62457_63021_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	5.08975e-99
NZ_CP030273.1\|WP_002724798.1\|71425_72226_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.5419e-33
NZ_CP030273.1\|WP_011836243.1\|77656_78958_+\|DUF2793-domain-containing-protein	gnl\|CDD\|371324	pfam10983, DUF2793, Protein of unknown function (DUF2793). This is a bacterial family of proteins with unknown function.	3.80205e-32
NZ_CP030273.1\|WP_011836236.1\|86974_88369_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP030273.1\|WP_011836242.1\|79139_80081_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	2.71163e-15
NZ_CP030273.1\|WP_041671156.1\|88874_89168_+\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	2.06104e-09
NZ_CP030273.1\|WP_011836239.1\|82322_83375_-\|sulfotransferase-domain-containing-protein	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	0.00454089
NZ_CP030273.1\|WP_002724804.1\|63084_64023_-\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.06441e-72

>NZ_CP030273.1|WP_009565051.1|74545_75538_+|hypothetical-protein
MARVVLHIGTHKTATTTIQDMFAHNADLLRQHGVIYPRLSRVAGHHGLVMEWNKLPDMYALPQGSIATLKQLTRDYAHVPGTLVLSSEEFSRGKPGAQVDFRAVRELLSDFESVSVVCVLREQWQFMQSIYLQASKERQPPKPSTMVDSVLKRDMTDGLWIDYNLLYDHLLSAFAPEEITFLDFDACRRHRDGVVGAMLDTLGCGLSASSLQVVHDGLSNVSPLALPTFAACVITEPDQAAPWVIDCATGAFRIEYGEEAKSCLWTYPEFQQLFAYAKERNGRLSERRKAVQPEFRISESDPEENRVYRDGLNTSFWIRCSRWIYRARRG
>NZ_CP030273.1|WP_011836245.1|72289_74545_+|glycoside-hydrolase-family-99-like-domain-containing-protein
MLKFHRLRRFARILVLTGEERRYLRAIRKSGLFDRTYYRGAYPGLNPIYLKYPEKHYIAYGERLGYRPNPDFSPQAYLRYHPDVAEAGVPPFLHYVRVGHAEQRLTKELPEVVALPARGMPQVRFEHGRQTAPYAVAVHVYYPDLWPEFAARLRRLRIPFDLYVTLTYRGEETDALAEEIRADFPGAFVTPMPNRGRDILPFVTLLNAGAFDGYRAVCKFHTKKSPHRQDGDLWRKHLIEGILPETGLEEKLEAFVEAPEAGFWVADGQHYTGTQWWGSNVEATRHLLQRIEIPLDREALSFPAGSIYWVKPLVLGLLRSLQLRLEDFDLEEGQVDGTLAHAIERVLGYLTARAGQKVLQTSELRPAAAAAPAKPAFVSAFYLPQFHPVPENDAWWGKGFTEWRSVVKAPSMFEGHLQPMLPADLGFYDLRATEVMGEQAAMAREAGIDAFCVYHYWFDGRRILEAPIDRLMARPEIDFPFYLCWANESWRRNWDGLSGTVLLEQTYGAGFEEKLAADTAPYLRDPRYARPDGRRPRFVIYRPEDMPDPQASVARLREGWRRAGIGEVELGAVRFHVEGAHPVPEGLFDFWVEMPPHGLVKGPDYLFGGPDGNRMPAAMNPAFSGLIYDYAAVARRALSETYVRTLPKATIAGVMPGWDNTARRGAAGHVAYGANPATFNVWLAGALERRVPASYRRELFVNAWNEWAEKAVLEPSLTFGDLNLQVMRQHLGAAEPATHLAEPPAHGMRSH
>NZ_CP030273.1|WP_002724798.1|71425_72226_+|ABC-transporter-permease
MTGLSGLLAGRRFLWGRSVLSLMLREMATSYGRSPGGYLWAVAEPVAALTLLTVVFSFLMRSPPLGNNFPLFYATGYLPFMYYTALTAKIGQAIRFSRPLLAYPAVSFFDAILSRFLLNTLTNLVVFVIVMVGIIAFYDLNVSLDLPAILEAFSMAAALAMGVGTLNCYLFSVAPVWERVWAILNRPMFLLSGIFFLMETVPEPFRTLLSYNPLTHVIAKMRQGFFATYDARLVDPLYAYSVSLVCLFFGMLLLNRHHRMLLNEGA
>NZ_CP030273.1|WP_017140428.1|69557_70697_-|sugar-transporter
MPAAAPRAAARLRHHGLLASFLGLVLAPILASGLYLFAIAEDQYTSTVGFSVRTEEMGSALDLLGGLSSFGLTGGGSASDSDILYQFIQSQELVQRINERIDLRAIYSKPGFDPVFSFDPDGGIEDLVDYWKDMVRISYDSTTGLIELRVHAFTPEDAQAVAQGILDESNRMINDLSAIARADATRYAREELDNAVERLRVQRVAMTEFRSRTQIVDPSADIQAQMGLLNTLQQQLASASIDLNLLRQTTQPSDPRIAQNERRIGVIEELIQREREKFGLGGGTGTGASTYSTMIAEFERLTVDLDFAEKAYIAALTNHDAAIAEAQRMSRYLATYVRPTLAQQSLYPQRGLLTLMIGGFALMLWAIGMLIYYSVRDRR
>NZ_CP030273.1|WP_002724800.1|68719_69541_-|ABC-transporter-ATP-binding-protein
MIELRNVSKSYVLNGTRKVVARDLNFTFPSGESVGLLGRNGAGKSSLLRMLAGTMLPDTGEILSSGTISWPVGFSGSFHPELTGAQNVRFVARLYGVDTEAMIAFVRDFAEIGQHFHLPVRSYSSGMRSRLAFGISMAVPFDTYLIDEVTAVGDAAFSAKSNAILRARLEESGAVIVSHSMPLLKKLCRSGAVLHDGQLFYYERIEQAIRHHESMMRGALPRWMRGDLDEGEGEEAGAAAPGPRARARAGAARAGGGRAARPGPASGTSEPRG
>NZ_CP030273.1|WP_011836179.1|67305_68421_+|ParB-N-terminal-domain-containing-protein
MAKRKRLTLPPLGGFAPGPASASEASPAPASPPALGPGLAPAPISRVTGEAAATAALREVAEELGAARSEGRLVLRLELDRIEEGWLVRDRIGLEAEELASLMTSLSAHGQRSPIEVTDMGEGRFGLISGWRRVTALRRLHAETGEERFATVLALLRRPDTAAAAYVAMVEENEIRAGLSYFERARIAAKAVEAGVFATDKLALQQLYGSASRAKRSKIGSFLGIYRALEGALRYPSALPERLGLALARRLEEEPGVAAKITAALAAAAPDSAEAELALIADLLAPAAEAAPEQEPARPSAPDPAPDAPAPAPAPDPAPAQPRSTRPPAPAAELRPGLFLKAEGAGSLHLYGPAVDETFRARLRDWLASEG
>NZ_CP030273.1|WP_050988687.1|65774_67181_+|AAA-family-ATPase
MRKSPPAREPQVPLPPYFNISPDAALAELEAPLTTAGFAEIARSCAQGRDDLAARGLDAEGRRSLRLFSTWEITRYLIPVATAHFRRVLKANPDLPQGISETEGGAKWFTLDEVLRLRAHFAAEGSKAKEYRPYRPAGLPAKLVAVANFKGGVGKTSTAAHLAMSAALDGYRVLVIDLDSQGSMTSIFGGRVADEWGTVFPLLARHYAAHLQAENRARVARGDPPVPMDETLTEAQKIRAGDLIAKTHWPNIDLIGAQLNLYWAEFQIPVWRMQGRSWKLWDALTDVLAEDGVLDRYDVIFLDTPPALGYLTINGLAAADILLVPLGASFLEFDSTGRFFDMLHSTFRSIEEGENIAARALGREELAFEWDAVRAVLTRYDGAQQAEMAALMQAYMGRTMAPERQDFTALIGQAGEQVNGIYEADYRDFNRDTYIRGRETFDATYAAFKRLLVGIWRREELAAADAAE
>NZ_CP030273.1|WP_002724803.1|64073_65036_-|replication-initiator-protein-A
MADFFICDILDALPKDDMASMEHPVFSLATRPDLRVLDYAHNGVRITVTPSVRGLATLFDKDILIYCVSQLMAALNAGRAISRTLHLTAHDLMTATHRETSGDGYQRLREAFERLAGTRITTNMEVGGREITTGFGLIESWQIVRRSRGGRMVQVMVTLSEWLFQAVLTKSVLTLSRDYFRLRKPLERRIYELARKHCGQQPEWRVSIATLAKKSGSASPLRVFRKMIRDMIAADSLPGYSLAEEPGDLLCVTRRAAVLAPGLAPALRDTTLERVRARMPGWDVHALVAEWHAFWHSSGQPRLRSADAAFLGWIERRVPG
>NZ_CP030273.1|WP_002724804.1|63084_64023_-|glycosyltransferase
MTDAPPPRIALLLATYNGAANLEAQLESFAAQTLRPTWLVVSDDGSTDATRALLAAFAARHPWLALRLVEGPCRGSAQNFLHLLGQVPPEADMAALSDQDDVWLPEKLARGAAAMADLPADLPVLYGGSSWICDAELGNRRPYPLPVRPPGFRHALVQNIAGGNTMMLNRGAIALLAAASREPERIVVHDWWIYQIVSGAGGRVIFDPVPLLLYRQHGGNLIGANDGFRAKYRRLRMLLSGGFRQWNAINIRALSASAHRFTPENRRLLAEFEALRRAGPWGRLRQLKRIGLYRQGLPGRLSLWLAAVLGRI
>NZ_CP030273.1|WP_009565041.1|62457_63021_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MQIEETELPGVLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAPPHAQDKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREPDTVVLYKTTDVYAPDCDGAVHFADPDLGIDWGIDPASAVLSDKDARAPRFADWTSPFSIEV
>NZ_CP030273.1|WP_011836243.1|77656_78958_+|DUF2793-domain-containing-protein
MSDASPILSLPYILPSQAQKHVTHNEALQRLDVLVQPAVLDRDRSAPPAAPAAGARHLVGPGAEGAWAGREEAFAVWDAEAAVWRFLAPQPGWQTFVLAEGAGLVFTAQGWRTLIGLLPEFPSLGIATSADATNRLAVAGPATLFTHAGASHRIKVNKAAEAETASLLFQSDWSGRAEIGLAGSDDFALKVSPDGTSFRTALSADRASGRVALPQGAVVTGSLTGSAVQASAADATPGRLLTVGAFGLGAPAPLVGNAGAVDGALAPGFYGYDSAQGSSGGPAGVQAGLLLHQSRGAGEVQLFLVEAGGGGLMPGILFSRARGEGAWSPWVAGGIVESAGNANGRYIRHQDGTQSCWQKVTTSASADVVAPFPAAFSTATGLVTVSSVVSNGAQALSPRLTGRTTTSVGVSVFSATNTRLAAQVELISMGRWY
>NZ_CP030273.1|WP_011836242.1|79139_80081_+|calcium-binding-protein
MPEVSPFPSLSPLSAPLAQSALAQTPAGTPGNDLLNGGPGADRLVGGDGNDTINGRDGVDRLYGGDGDDLLDGGFYHDACYGQAGNDTFRIRGVDLADDVYGGAGTDTLDLSGYTNLRLGFRVDLAAGRYDFRPEPFGPYVVKSIEIVIGSARADVLLGSRLAETLSGGLGNDRLEGRGGADVLRGMEGADALFGGTGNDLLLGGAGNDRLDGQWERDVLVGGAGNDILIGGGGADRFVFAGNFGRDRIRDFSPDMEGEWIDLRGVGAITGFGDLMANHLSEVNGHVVIEVGANRITLEGISSEMLTRDDFLF
>NZ_CP030273.1|WP_011836241.1|80196_81519_+|hypothetical-protein
MTLLRTTLLTALLSLALGAGAEAAPEAIYGPGPRALDNREIFAAANLPLWQELDRAGVEGIVLNASFLMTTDFRGIGAKGEKRRPDDTYLTDADLGGLAAIVARTGLQVTYEAGVGLSGARCDASLSPEALGRAAAAFEFERNVRRLTDAGIPVSAINVDGPMLRLLPDSDKPAGCRETAGAGFDVRSAGQIVHAYMVELRDRIEAAQEKQTVQVRWLVNLPLWQVGRVPRNPVYSEPTPDAKPTTDLTDAVRSLAKAQAEQELPGRALEIAEVVIGYPYSMGKQNPNRYAIRVRNLWLSSRALNPRSGHPPPLGFIVNTHSYLNPCLKREGRPDVAFLTFRRGKGSVSEACQRAQIGEDTVANAQDGAMDNDADYLRDSFTYADELSPGGELARQLVLRDGTRIADHVAHIYYQSWGVNPLSNAWYMERLIERLEHGDR
>NZ_CP030273.1|WP_011836240.1|81608_82298_+|hypothetical-protein
MPYHLVHVGKCAGESVIRTLQPQVAGLEIYHVHDANLQLADAVLRHDPSDIFIVLTRDPVDRFVSAFEWDLHSKSLDGDGRRLKNETWRRIFGAFLTANDLAEALTDPRRERRQAAVAALRASKLHMQFDLGWYLPPQIASELPSGRTHVIRMERIGADLPHFLTSQGLQAAEAPVTKNSYKHRLPPERVTKTMSELARRNIRLASHATYATLAILESRLAGPEATVLI
>NZ_CP030273.1|WP_011836239.1|82322_83375_-|sulfotransferase-domain-containing-protein
MARLLLHIGAHKTATSYIQRRFHLNRDLLARHGILYPDIGPNRAHHILATPWIDIPEIPESYWGPEETGSTGRTRQDAFFEKFTKDYASQKGTVFLSAEVFSRALPQHVDMADLAKRLSDFEEVKIVYVVRHQTDYIQSIWLQVAKNGRAGRFDPFLAHALQKHLASGVWIDHHKVIENVLSGFSRDQLILFDYETIRKHPEGVIGPFLELLGSPLHVHDLAELDNREANISPDPLAIWMTHAAFFPNPLKLGLYQKLKDALDRIRENYGKKKTSLYTRAQYEAVIQASSEMNIPLRGWLESDKGDSPIFTTPSSDQILFRDDLTEADLGPYLPEENLRMREKLRAALSQ
>NZ_CP030273.1|WP_011836238.1|83494_84499_-|NAD-dependent-epimerase/dehydratase-family-protein
MRRILVTGTAGFIGFHLARLLLAEGFRVHGYDGMTDYYDVALKRRRHAMLLQDPNFSATEGMLEDQALFDRVADEFAPEVIVHLAAQAGVRYSVENPRAYLDANVIGSFTVMEAARRLKVAHLMMASTSSVYGANEEMPFRETDKADRQLTIYAATKKANESMGHAWAHVHGLPITMFRFFTVYGPWGRPDLALFRFVEAILEDRPIEIYNHGEMWRDFTYVDDLVRAIRLLIEAVPGGPETAVEEDSLSPAAPFRIVNIGNSDKVRLLDFVEAIEESLGRRAIRSYLPMQVGDVPATWADAGLLQRLTGYRPQTDIRDGIAQFVSWYRDYTGK
>NZ_CP030273.1|WP_017140431.1|84783_85047_-|hypothetical-protein
MRPLALRNGHRLLAVEAAYLLFVLVLAATGLNDDPEGASFVTLILALTSGGVVALLAVTHLASDPSGSLVLPPLLLMVFGAVYPILQ
>NZ_CP030273.1|WP_011836236.1|86974_88369_+|F0F1-ATP-synthase-subunit-beta
MTGRVTSVRGPVLDIRVEGPLPAIGDVVEVGSLPVVAEIQAHLGAADVRAIALHSTQGIARGETVRTTGGPLRVPTGPAVLGRLLDVAGRPADLGPPIPAGAPRAPILHPAPPLAAQDARFQVFSTGIKVLDLLAPLAQGGKTAMFGGAGVGKTVLVMELIRAMVSGYDGISVFAGVGERSREGHEMLGEMKASGVLDRTVLVYGQMNEPPGARWRVPLTALTIAEGFRDGEGRNVLLLIDNVFRFVQAGAEVSGLLGRMPSRVGYQPTLETEVAALQERIASVGRASVTAIEAVYVPADDFTDPAVTAISAHVDSTVVLSRQLAAEGIYPAIDPLATTSVLLDPAVVGEEHARVAGRLKEAIEHYHELRDVIALLGIEELGREEQLMVGRARKLQRFLTQPFFVAAAYTGMEGRSVPVAETVQGCAAILGGECDDWDEGSLYMIGTLAEARAREEARRRKGAA
>NZ_CP030273.1|WP_011836235.1|88365_88806_+|F0F1-ATP-synthase-subunit-epsilon
MSLTLRVTTPLAAVLEEEGLASIRAEDASGGFGLLPGHVDLLTVIEAGVLRFRRPEGPWHFCAIRGGVLRATGGRLVTVACREAVPGEDLARLEAGLKRQAEAADQAARRARGEQVRLHANAIRSLMRHLDRAPGADLSGIVEAFE
>NZ_CP030273.1|WP_041671156.1|88874_89168_+|AtpZ/AtpI-family-protein
MSPPAPPGASPDPLAEAVRRSAVRAEAGRRDPEPSLARRFGQIGVLGWVIVLPTLGGVLAGGWLDRLLGTGITFAAALTMAGAALGLWLALRWMHAQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NZ_CP030273	Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence	67220-67252	0	1.0
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	CP047033	Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence	60898-60930	0	1.0
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NC_009040	Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence	21550-21582	0	1.0
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NZ_CP047039	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence	60874-60906	0	1.0
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NZ_CP015213	Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence	104690-104722	0	1.0
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NZ_CP051470	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence	19476-19508	0	1.0
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NZ_CP015290	Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence	3847-3879	0	1.0
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	NZ_CP030273	Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence	75966-76004	0	1.0
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	CP047033	Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence	69648-69686	0	1.0
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	NZ_CP047039	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence	69619-69657	0	1.0
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	NZ_CP015213	Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence	113436-113474	0	1.0
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	NZ_CP051470	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence	10724-10762	0	1.0
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	NZ_CP015290	Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence	119408-119446	0	1.0
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	NC_011960	Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence	63100-63138	1	0.974
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NC_011960	Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence	72598-72630	2	0.939
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	CP036421	Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence	28105-28137	2	0.939
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	NC_009040	Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence	30261-30299	2	0.949
NZ_CP030273_2	2.1\|75966\|39\|NZ_CP030273\|CRISPRCasFinder	75966-76004	39	CP036421	Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence	18781-18819	3	0.923
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	291403-291435	7	0.788
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1573927-1573959	7	0.788
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	558458-558490	7	0.788
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MK864266	Gordonia phage Arri, complete genome	8692-8724	9	0.727
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MN284907	Gordonia phage Fireball, complete genome	8624-8656	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MK864264	Gordonia phage VanDeWege, complete genome	8812-8844	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MH479910	Gordonia phage Danyall, complete genome	8520-8552	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MT639651	Gordonia phage Portcullis, complete genome	8580-8612	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MH479917	Gordonia phage KimmyK, complete genome	8648-8680	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MH669015	Gordonia phage TillyBobJoe, complete genome	8335-8367	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MK814761	Gordonia phage SmokingBunny, complete genome	8499-8531	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	KX557286	Gordonia phage Twister6, complete genome	8431-8463	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MK864267	Gordonia phage Valary, complete genome	8884-8916	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MK967381	Gordonia phage RogerDodger, complete genome	8884-8916	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MT310872	Gordonia phage Evamon, complete genome	8501-8533	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MT521998	Gordonia phage Jambalaya, complete genome	8332-8364	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MK864265	Gordonia phage Barb, complete genome	8648-8680	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	NC_030913	Gordonia phage Wizard, complete genome	8624-8656	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MK305889	Gordonia phage Mutzi, complete genome	8520-8552	10	0.697
NZ_CP030273_1	1.1\|67220\|33\|NZ_CP030273\|CRISPRCasFinder	67220-67252	33	MN010760	Gordonia phage Nubi, complete genome	8521-8553	10	0.697

1. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

2. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

3. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

4. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

5. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

6. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

7. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
ggggggtcggcagggcggcacggcgggggcaaa	Protospacer
*********************************

8. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

9. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

10. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

11. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

12. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

13. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	Protospacer
***************************************

14. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to NC_011960 (Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence) position: , mismatch: 1, identity: 0.974

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctccagttcggccgcgtgctgcgtctt	Protospacer
*************** ***********************

15. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NC_011960 (Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence) position: , mismatch: 2, identity: 0.939

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
cgggggccggcagggcggcacggcgggggcaaa	Protospacer
 *****.**************************

16. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.939

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
cgggggccggcagggcggcacggcgggggcaaa	Protospacer
 *****.**************************

17. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 2, identity: 0.949

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
ttccgcatggcgctccagttcggcctcgtgctgcgtctt	Protospacer
*************** ********* *************

18. spacer 2.1|75966|39|NZ_CP030273|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.923

ttccgcatggcgctcgagttcggccgcgtgctgcgtctt	CRISPR spacer
tccggcatggcgctcgagttcggccgcctgctgcgtctt	Protospacer
*.* *********************** ***********

19. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.788

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
gccgggtcgccagggcggcaaggcgggcgaaca	Protospacer
*  ****** ********** ****** * * *

20. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.788

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
gccgggtcgccagggcggcaaggcgggcgaaca	Protospacer
*  ****** ********** ****** * * *

21. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
gccgggtcgccagggcggcaaggcgggcgaaca	Protospacer
*  ****** ********** ****** * * *

22. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MK864266 (Gordonia phage Arri, complete genome) position: , mismatch: 9, identity: 0.727

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agatccttggcagggcggtccggcgggggcaac	Protospacer
.*.   *.**********. ************

23. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MN284907 (Gordonia phage Fireball, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

24. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MK864264 (Gordonia phage VanDeWege, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

25. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MH479910 (Gordonia phage Danyall, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

26. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

27. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MH479917 (Gordonia phage KimmyK, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

28. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MH669015 (Gordonia phage TillyBobJoe, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

29. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MK814761 (Gordonia phage SmokingBunny, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

30. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to KX557286 (Gordonia phage Twister6, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

31. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MK864267 (Gordonia phage Valary, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

32. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MK967381 (Gordonia phage RogerDodger, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

33. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MT310872 (Gordonia phage Evamon, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

34. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MT521998 (Gordonia phage Jambalaya, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

35. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MK864265 (Gordonia phage Barb, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

36. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to NC_030913 (Gordonia phage Wizard, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

37. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MK305889 (Gordonia phage Mutzi, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

38. spacer 1.1|67220|33|NZ_CP030273|CRISPRCasFinder matches to MN010760 (Gordonia phage Nubi, complete genome) position: , mismatch: 10, identity: 0.697

ggggggtcggcagggcggcacggcgggggcaaa	CRISPR spacer
agactcctggcagggcggtccggcgggggcaac	Protospacer
.*.   ..**********. ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

56791 : 67181

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002724637.1\|56791_57628_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.0e-49	41.1
WP_011836184.1\|57829_58555_+	sulfotransferase	NA	NA	NA	NA
WP_011836183.1\|58921_59704_+	sulfotransferase	NA	NA	NA	NA
WP_002724812.1\|59678_60569_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.7e-87	54.9
WP_011836182.1\|60565_61417_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	3.1e-32	38.5
WP_011836181.1\|61413_62454_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-91	52.1
WP_009565041.1\|62457_63021_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.7e-32	43.5
WP_002724804.1\|63084_64023_-	glycosyltransferase	NA	NA	NA	NA
WP_002724803.1\|64073_65036_-	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	1.3e-58	39.1
WP_050988687.1\|65774_67181_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	2.1e-06	26.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP030272

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP030271

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP030273

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection