CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP030279	Propionibacterium freudenreichii strain CB129slpB chromosome, complete genome	2 crisprs	csa3,cas3,WYL,DinG,DEDDh	0	4	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP030279_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030279_1

390757-390921

Orphan

Consensus_repeat	Method
GCCAAGAAGCCGGCAGCGAAGAAG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP030279_1

>merge|NZ_CP030279|1|390757-390921|CRISPRCasFinder
GCCAAGGGTCCGGCGCCGAAGAAGCGCACCACCCGCAAGGCGACGGCGAAGAAGGCGGCAGCTGCCAAGAAGCCGGCGGCCAAGAAGCCGGCAGCGAAGAAGCCAGCAGCCAAGAAGACGGCGTCCACGGCCAAGCCGGCAGCCAAGAAGCCGGCGGCGAAGAAG

>NZ_CP030279|1|1|390757-390921|CRISPRCasFinder
GCCAAGGGTCCGGCGCCGAAGAAG	CGCACCACCCGCAAGGCGACG
GCGAAGAAGGCGGCAGCTGCCAAG	AAGCCGGCGGCCAAGAAGCCGGCA
GCGAAGAAGCCAGCAGCCAAGAAG	ACGGCGTCCACGGCCAAGCCGGCA
GCCAAGAAGCCGGCGGCGAAGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030279.1\|WP_114178803.1\|397722_398571_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP030279.1\|WP_036940523.1\|376473_376740_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030279.1\|WP_013161895.1\|382521_383526_+\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|225839
NZ_CP030279.1\|WP_051733962.1\|375979_376312_+\|flp-pilus-assembly-TadE/G-like-family-protein	unknown	unknown	gnl\|CDD\|274799
NZ_CP030279.1\|WP_013161883.1\|400349_401801_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236830
NZ_CP030279.1\|WP_036940526.1\|379188_381864_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274006
NZ_CP030279.1\|WP_013161896.1\|381877_382522_+\|dimethylsulfoxide-reductase-subunit-B	unknown	unknown	gnl\|CDD\|131996
NZ_CP030279.1\|WP_013161887.1\|396324_397374_+\|PSP1-domain-containing-protein	unknown	unknown	gnl\|CDD\|224688
NZ_CP030279.1\|WP_013161902.1\|375359_375818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030279.1\|WP_036940541.1\|390988_392434_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030279.1\|WP_036940603.1\|393395_394709_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236134
NZ_CP030279.1\|WP_013161890.1\|392430_393069_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_CP030279.1\|WP_013161880.1\|404141_404480_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP030279.1\|WP_052809186.1\|377211_377703_+\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|376858
NZ_CP030279.1\|WP_013161884.1\|398570_400085_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP030279.1\|WP_051733963.1\|386233_387751_+\|methyltransferase	unknown	unknown	gnl\|CDD\|368316
NZ_CP030279.1\|WP_162786068.1\|395139_396195_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP030279.1\|WP_036940529.1\|383522_385985_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|274800
NZ_CP030279.1\|WP_036943182.1\|401976_403332_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224152
NZ_CP030279.1\|WP_162786067.1\|377918_379127_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|224068

Protein	Function_ID	Function_description	E-value
NZ_CP030279.1\|WP_114178803.1\|397722_398571_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.48517e-92
NZ_CP030279.1\|WP_013161895.1\|382521_383526_+\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|225839	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only].	2.33614e-22
NZ_CP030279.1\|WP_051733962.1\|375979_376312_+\|flp-pilus-assembly-TadE/G-like-family-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	7.79187e-09
NZ_CP030279.1\|WP_013161883.1\|400349_401801_+\|amino-acid-permease	gnl\|CDD\|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0
NZ_CP030279.1\|WP_036940603.1\|393395_394709_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	1.12764e-174
NZ_CP030279.1\|WP_013161896.1\|381877_382522_+\|dimethylsulfoxide-reductase-subunit-B	gnl\|CDD\|131996	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.	9.71222e-91
NZ_CP030279.1\|WP_013161887.1\|396324_397374_+\|PSP1-domain-containing-protein	gnl\|CDD\|224688	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown].	4.72935e-47
NZ_CP030279.1\|WP_036940526.1\|379188_381864_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
NZ_CP030279.1\|WP_013161890.1\|392430_393069_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.3939e-79
NZ_CP030279.1\|WP_013161880.1\|404141_404480_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	9.31301e-46
NZ_CP030279.1\|WP_052809186.1\|377211_377703_+\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|376858	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit. This family is the delta subunit of the nitrate reductase enzyme, The delta subunit is not part of the nitrate reductase enzyme but is most likely needed for assembly of the multi-subunit enzyme complex. In the absence of the delta subunit the core alpha beta enzyme complex is unstable. The delta subunit is essential for enzyme activity in vivo and in vitro. The nitrate reductase enzyme, EC:1.7.99.4 catalyze the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen. This family also now contains the family TorD, a family of cytoplasmic chaperone proteins; like many prokaryotic molybdoenzymes, the TMAO reductase (TorA) of Escherichia coli requires the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold, allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor.	1.67937e-17
NZ_CP030279.1\|WP_013161884.1\|398570_400085_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	3.73254e-13
NZ_CP030279.1\|WP_051733963.1\|386233_387751_+\|methyltransferase	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	1.2071e-23
NZ_CP030279.1\|WP_162786068.1\|395139_396195_+\|hypothetical-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	5.05488e-09
NZ_CP030279.1\|WP_036940529.1\|383522_385985_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	0
NZ_CP030279.1\|WP_036943182.1\|401976_403332_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224152	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism].	1.56609e-62
NZ_CP030279.1\|WP_162786067.1\|377918_379127_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|224068	COG1145, NapF, Ferredoxin [Energy production and conversion].	1.69821e-07

>NZ_CP030279.1|WP_051733963.1|386233_387751_+|methyltransferase
MTMRQHAVSDDFLRPDSINAFTDALRGAKYNVDAVLERLGEAGQEGLTRNQTMPALDRLGDATDAQADLIRLFPLQQIVPRSRLAAFLDVPALIEAGVLGAIGREGIHADIDVRPYGFTDAAGEWSGWVAADPIPGMDSMVTRTRPNYVLGVSPASTSLAQLTVPDRVGSALDLGAGCGVQSLHLARHADTVTLTDINPRALDMARLTLALNGLDLDVRAGSFYEPVAHDSFDLIVTNPPYVMSPPTDAADRLVYREGGFAGDGLVRHVVREGASHLADGGLLQVLANWADTREASWEDRLAEWVRGTGCDLWVVEREHLDVYSYIEMWLTDAGLSGDPIWLDRYAEWLNYFDAQGITGVGLGWIMVRKSGSAEPSVHMESWPYTIAQPVGAALSAGWTARDVAGLDDDELLARTFTVDPSVVQEATGRPGAADPSHVVLRQTAGLCRALAVDAAVGGVIGACDGELPLGVLIGAVAGLLDQPVDELEAAILPRLREAIEQGFIA
>NZ_CP030279.1|WP_036940529.1|383522_385985_-|DEAD/DEAH-box-helicase
MAIPQWLAGDPCVLHVDHRDALPGTTAEWPEWLSADCVATIRAAGVPLPWRHQREAAELAHAGRHVALSTPTASGKTLAYLLPLMAATAPGAAAEGFEWADAAQGDRRGPSTNRGLAAALVADHGLSADRLDPGLSGGGLAGAGLSGEAMVGSRARATTVSRARSALGLKQGATALYLAPTKALAHDQMRAARTFGPKGWQAGCLDGDSDAAERRFAREQADLVLTNPDMVHHALLPGHARWARLLSGLRYVVIDEAHRYRGVFGAQVGGVIRRLRRLCHAYGSDPVFILASATASHAGESGAALIGEPEPIAEVNDDASPHPARDVVLWRPESSAYDDAAKILAGLVDQGRQTIAFVASRAQCELMAVRAKEKSRSGRAIASYRSGYLAMDRRQIEAGLQSGRLFGVSATNALELGVDVAGMDAVVICGFPGTLASLWQQAGRAGRADRDALVVVVQREDPLDAYLFAHPELIFSAPIERTVLFPDNPHVLGPQLAAAAQEAPLTPADARWFGPTMAGLCEQLCAAGLLRRRATGWYWPRPERAVDAIDLRGTGGKPLDIIEEDSGRVIGQVDMAAADHSVYPGAVYLHQGEQFLVDAYHPERREALVNRRRPGYFTQPRTIIEARILHEDAHKPLGRTTVCTGDIDLTTQVTGYLRRDEVTTQVWDENPLELPVQRMGTKAVWWTVPEDVAAEVGLSAIKLANAAHAMEHTAIGLLPGFAPCDRWDIGGVSMMVHPDTELCTIIVHDGQAGGSGFARAGYECAEAWLAATLQRLQTCSCLAGCPACIVSPKCGNGNQHLDKDAATRLLAALLEGPAQR
>NZ_CP030279.1|WP_013161895.1|382521_383526_+|dimethyl-sulfoxide-reductase-anchor-subunit
MDVHHLPLVLFTVIGQMCVGTFLCLGVMQLVVSARHGRAVAQRIIEPVVYAIGPVMVLGLVASMFHMHDITHTLNVIRHWRTSWLSREIIFGIGFAGLGFAYALLEWFEVAGFRLRQVVAALTALFGIALVWSMAQIYYSVPTIPAWHNWAVPFQFFGTTAVLGPLAVGCALMATAALRARHAAHDVATPAANPAHGGPTARIRGRIRAINAPATAGEWAISTSVVRWLALVAAVAAAAVLISYTLYVSGLTGGNAQAQLAAGVFSGPLFAVRLTLLGLAAIVLGLFVFRVADRAPVDRSWGLAALMATCLAGAFVAEVIGRFFHYAAMYRVGI
>NZ_CP030279.1|WP_013161896.1|381877_382522_+|dimethylsulfoxide-reductase-subunit-B
MADDLTRPGADYGFFFDQTLCTGCKACQVACKDKHDLPVGVTWRRVVEYSGGSWQTNEADHTVTPNVFTYYTSISCNHCEDPLCVQVCPTTAMTQRDDGTVFVDQSKCVGCRYCEWACAYGAPQFNAEAGHMTKCDLCYDYRQSGQDPACVAACPSRALEWGPIDALRAAHGDEAGIAPLPDPAITHPRLVIKPHRDAQKWDQADGHIANPKEI
>NZ_CP030279.1|WP_036940526.1|379188_381864_+|molybdopterin-dependent-oxidoreductase
MAGTDPMAGTSPMDGTDPMTGTDSMAGAGSAAGTTTADPQHTQHHPSPTRRTFLKWSAAVGGTAALASTVTNLGMPHGSTAHAATEGIADADRTVWSACTVNCGSRCPLRLQVKDGTVVRVLPDNTGTDQIGSQRVRACVRGRSIRHRIYNPDRLKKPLKRKPGTKRGDEQWQEISWDQALDEIAAKMTQIKADYGNEAIYINYGTGTLGSTISKSCDADVSAFARLMNTWGGYLDHYSDYSTTEITAAYPYFYGSWVDGNSFDDVATSHLQVLFGNNPIETRMSGGGQLFVTQQMRKEHAVRTIVIDPRYSETAVDLADEWIPIRPGTDAALVAGMIHVMVAENLHDQGFLDTYCIGFDDAHMPDGAPANASYRAYLAGRGADGVEKTPEWAASITGVPADQIRRLAREIALAKPCAITQGWGPQRQANGENTARAIFLLAAVTGNIGVSGGGTGARESARSISFVTPFNKGTTNPSKKIIPVFAWLDAIDHGEQMDTFNAGVCEKPASMAREAKVPVDDNGNPTNIKLDVPIKMVWQYGGNSIVNQTGDNNKSVEILRDDSKCELIVNCDIQYTTSCRYSDYILPGTSAAEEADIHPGSNGGPMAYGIISQQAIEPLYECHDIYWICTQLARRLGAEQAFTQGRSREDWLRATIDATRAKVPDLPDYDDWKQRGIFRKDMGPVIALADFRADPVAHALETPSGKIEIYSQRLARMSEKWEYGVFRDKLPGDSLHPLPEFVDTWEGALAARASREYPFQVIGHHYKARTHSTYGNVDWMKEAHRQQAWINILDARNRGIADGDQVFLYNDRGTIRLEAKVTERIMPGVISVPQGAWYAPKSADEVKPPPGANPERPVDTAGSVNSLTSLHPSPLARGNAVHTTIANVVKA
>NZ_CP030279.1|WP_162786067.1|377918_379127_+|4Fe-4S-dicluster-domain-containing-protein
MPSHRTDTDVTPADATRSLLRWLAAHDLPDEVVLTCADAPVPAVAPDTLTVQVPDGVASAGIGLPAQLLAMGVAHIAIETCSCHEPSDEQAPSDEQILPDQQIPRDETVQRWPAALKDVEVRHPASNPARGPSAGTPTATPTSPPTPLAADTRQGAVGRHPAPGQRAGPARMVLGVALAGRARLDLSRAEPERVHDALRQLSEQGRADLTRLHDIAPTPSPAPVLRAEGCVACGVCVMSCPHGALGLADGDDDGTTLLIHLAEKCRGEMSCLRLCPAGVLTTPAAHPAPQTPRDEASPPQTGSRMDGGSQRPVSRQERTPSRASATDDVPHIPMEQLAERPHRAIARVATARCARCGTRHPASQGTLCPTCHFRSTHAFGSAMPPALARAAGADNGAHRPRQ
>NZ_CP030279.1|WP_052809186.1|377211_377703_+|molecular-chaperone-TorD-family-protein
MEQIRESARAGETPEEIRRDHDLLYGDTAAARVAPYESVHRGVDGLVFGEATLEVRAAYQALSLQAPKLNQEPDDHIGLEFDFMAQLTLQVIDALYGDDAARAEKLMTHGTDFLRDHLLAWAPQMLDLATQHAQTHFMKGVVLLSIGALDSYAELLDLPFERP
>NZ_CP030279.1|WP_036940523.1|376473_376740_-|hypothetical-protein
MAHHKDDPETMARMRTWLAAVAGELGLDDGLPAEAEKPVLDLISQVAHGPSRPGAPLTAFLVGVAVGRGDSLEDQTAAISRLVARFGA
>NZ_CP030279.1|WP_051733962.1|375979_376312_+|flp-pilus-assembly-TadE/G-like-family-protein
MLALIIVLVTCVVAYWTVVFAGWVGSIHRARSAADMASLAGAHALQVNGDACSEARRIATSNGAELTDCTPTRGIGEYVVEVTIAMPLTPSLPGAPSKVRETSTAGEVQR
>NZ_CP030279.1|WP_013161902.1|375359_375818_+|hypothetical-protein
MGTRAGRRAVMHAAQAPASEYPHRNPRPGDAVRRTRFGRTRDRGMVTAELAVGILSVALLAGIFCWVVAVIGVQIRCGDSAAQIARQTARGDQAAVQRARAGVPRDAEIDIRSSGSDVVVTVKAELSWGKVGPVTVSGSSRVTREAGVEAGS
>NZ_CP030279.1|WP_036940541.1|390988_392434_+|hypothetical-protein
MSKKRATWHFQLPWHVESPLLTDIGLALDRVVPRDPEHLPPATVTLMDTADERLQRAGVKVAQQSYGDHGEWFVWGPDWTPWLPAERDDPVGVEAELPDEVADLTRPFRRRNALRPVVVATRMRVRYAVIDDHGTVVATLTSDRIVVRRRGVAAGRFRQVAIDVAGLDPQRRAFIIERFEAIGAQRVDALPHLFEQAVAASRDDALPGERPAGGSLDAFVGWVLARRAREVITNDLALRSGEVGDATALVVALAGLRDELEALSGLLQPAWRDEQLRRLDALGPDPDGHVLAHDDYLDLLDALEAATRTPPLTVDGATAARAVLGERLGGDRLRLIGHVDALIRGDLVGGDLMGRDQARGGGSQSITRKEWMRALTVGEQALQLTEVAGVLFGRRKHMVRLLGKVVAALSAARPPEGPLSDDEIAELSPAQAYAAGRAVERGLQVTGAERRYLVDHWPTWRAKLLALTFSSNKPSASGDHR
>NZ_CP030279.1|WP_013161890.1|392430_393069_+|dTMP-kinase
MSTRRYPGWFVVFEGGDGVGKSTQVELLADALADAGVSHLVTREPGGTPLGDNIRELLLDPASGDVAPRAEALLYAADKAQHLHEVVVPALAAGKVVVCDRYLDSMLAYQGAGRVLELREVADIADWATRGLRPDLTVLLDLDPDEAVGMKEHKDRLEQAGVEFHRRVRQGFLDLANADPERYLVLPGRQGREWAAGRVRERLRGLGVQLIG
>NZ_CP030279.1|WP_036940603.1|393395_394709_+|DNA-polymerase-III-subunit-delta'
MLPFDPAHPLVGVWSDLVGQQQAVRVLRRAVIGAEAAEAARVRSASGDAAAVDGAAPGHAMTHAWLVTGPPGSGRSNAARAFAAALQCRFGGCGECNDCRTALSGAHPDVTLVRTEMLSIGVDEVRDLVRKASMSPTMGRHQVIVVEDADRITDRGADALLKSLEEPPARTVWVLCAPTPDDVIVTIRSRTRQVALRTPPNSDVVRLLVERDHIDRAMAEYAAKAAQGHIGRARALARDEKVRNARHAVLLVPSRLTSVGACLTVADDLVKAADAEADRITGRLDEADRARLSEALGFGTKGARPRHAAAALRDLEDQQKARAKRVRRDALDRSLTELTTWYRDVLAVQTGAVDPSGLHSASGVVEGALDEPPTHTVGLINAEMRADVARAAVATTPEQTLHSIDAILECRQALETNVNPLLAMEALLLQLGTATQS
>NZ_CP030279.1|WP_162786068.1|395139_396195_+|hypothetical-protein
MSNRRPPAQSPAGQTPAGPERGVPDFSAPDAGPRPGFMTAAELAARDGAPGSAAATGQGAASGEAAVPAGSATSSFLRTTSDSSTERSQQVTNEASSAAASVSSMPNMPVVAASTVFGADLSHNSSARDMADTATQKPVIDTAAADRERKAREEAARVKQEEAARVKQEEAAQRARERAARERRLGTVAQQPQEPLVIEKPQGPSTDKFAPALGLFLMRLVTAVIIGVYGYQMLTERQPVVDALVSIGIPRAGMVTWGLSVLLLVMAVMFVFGFGARVAGALTTVLAGLTIAFYRWGDFNPFVAGTAGFSGDIELLLAGIGLVFLLVGAGGWSLDGGIRRSRVRRKQEAEF
>NZ_CP030279.1|WP_013161887.1|396324_397374_+|PSP1-domain-containing-protein
MASVLAVEFQPHGQLHYLAAGGHEHAIGDQVLYPTEDGREVARVVWRGDVDLPDAVPVCAGAATPADLARDEANRQVRADAAEVARLLIERHGLAMKLLAVDFLDQSSDYDRLTVFYYQSPERVDFRALLGDLVRALRSRIDLRQVGARDAARLTGGVGPCGRPLCCSSMLTLDPVSLRLAREQGMLVSAVQRCGVCGHAMCCLRYEQQAYEDFHARAPKVGTTVMTPAGEGTVIGHQVPNDALLVRTRDGEQSSCPLAQASACQCAAATPRKKKKPRTKRRRADAAVPNVPGAAGAAPLVDGTGAGKTSGTGGPTGSADASGTGGPAGSDDGAGPSRPTAASDAGTAQ
>NZ_CP030279.1|WP_114178803.1|397722_398571_-|ABC-transporter-ATP-binding-protein
MYTLTDVTKTYAGKHPVTALDRVTITIPDGQMVAIEGPTGGGKSTMLQMLGALDVPTSGTVTLDDVELSDAGERRLQEVRAERVGIVFQNFNLIATLSALENVQTALVPLGVGAEERLERSRAALDQVAMGDRADHLPSELSGGQQQRVAIARALVKRPRVLLADEPTGNLDGPMRDEILALLHSSWHAMGLTVIMVTHDSRVAASAQRRLRIAHGRLSEIGDGRRAGADEPDGARGDAGGGTALPRSGPGPPGRRARGRDAGRIAPAHGTGDVRGASAGLS
>NZ_CP030279.1|WP_013161884.1|398570_400085_-|ABC-transporter-permease
MLMTFARRELGRRRRQTIIVALGLAIAVALLMVVHSVSSGVSRAQSEVLSSVYGVGTDITVTQKSTQQPGQGFDMAPGAQDANGNTSVSSTTVRTTRGTEAFDASQLATVQGVQGVAGATAVLNLEQTTFDGQIGSSGSASSSSSGSSSSASASPSASASSGTSRGAMGGGRMNLNQTTITGVEPGATLGPLSTLSVSSGRALATSDDGNDVALVSSDYASQHNVAVGGTISVANKDVSVVGIVTSSSSSSISEVYLPLKTAQALSDNTDKISEILVQASDSNQVSTVASALTKALPSATVSTQEALAQSVSGSLGSASKLISSLGTWLSIGVVVVAFGLAVLFTVSGVNQRTRDFGTLKALGWSRRRIVGQVATESLLRAGIGGAAGIVLGLVATLVINAMGITLSGSTGGFSMGGGRGAPGGQPSGMPSMAGGQAGGAPAGGGGGMAERASNAVNVVLHSPVSIQMIAIGLAAALVGGLLAGVIGGWRAGGMRPAEALRSVE
>NZ_CP030279.1|WP_013161883.1|400349_401801_+|amino-acid-permease
MSETNAVVSDRHHGDQDNDDQHLHRALGNRHVQLIAIGGAIGTGLFMGSGKTIHTAGPSIMLVYLIIGVMLYFVMRAMGELLLSNLNYKSFQDFAADLLGPWAGFFAGWTYWLCWVVTGMADVIAFTSYWDFWLKNETWSIILSVATLALLFVLNLLTVRLFGELEFWFALIKIVAILGLIVLAVVLVVIGFTAPDGVKASLANLWNDGGVFPKGMNGFLAGFQIAVFAYVGIELVGTTAAETKNPLKTLPKAINAVPVRVLMFYVVALAAIMCVTPWSQVNPAVSPFVNLFGLVGFGAAATVMNFVVLTSAASSANSGIYSTSRMLYGLSHKGMAPNAFGRLTRHGVPASGLFVTVVLVSSSLLLTMSNSVIEAFTLVTTVSSVLFIFVWGLILVSYLRYRAKRPDLHASTTYAMPGGRVMCWVVLAFFAFVIWVLTQQPDTLKALVVTPIWFVILAIGWFAVRGRAHLDDTITQELRAEKG
>NZ_CP030279.1|WP_036943182.1|401976_403332_+|FAD-dependent-oxidoreductase
MLDCLIVGAGFGGLTVATQLVRRGHDVMVLEARDRIGGRVDNARFSSGELVEQGGQWVFPNHDRMLELIDEAAAATMPANPGKLLVVQQGDVWAVEQSPDEHSHRTPFAAADLGQGVLRLRRLAERTVSDPAWAGANTAWLDQPMERWLTANLRTPSAQRDLRGALRAVVHGPLSDTTLGDVLTHVRAGVDMENLIATNGDIGQVRLVDGVLQLAERMAAQLEGRVRLSTPVVTIDQEDDAVVVVTSEGEQIRARTAVLSVPPWLAKDLVWAPQLDPWRYETVQKTPAGAIIKCHMLFEPPWWRDAGLSGQMAADDGPVRVTFDTSDPASERGILMGFFEGAEAATLTKFSASMRERVFRDALVTVFGEQAATPLEYLDHDWGADPFTKGSHGAHFAPGLWSVTGQQLGARFGRVHFAGAEYASKFNGYMEGAVRSGTDTAAQVVMQLHGQ
>NZ_CP030279.1|WP_013161880.1|404141_404480_-|P-II-family-nitrogen-regulator
MKLITAIIQPDVLEDVEIALAQAGASGMTVSEVSGYGRQRGHTEVYRGAEYTIDFIAKVRIEILAAEAEVEGIISIICESARTGNVGDGKVWSSTVEDVVRIRTGERGAEAL

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Crispr_ID: NZ_CP030279_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030279_2

2465096-2465207

Orphan

Consensus_repeat	Method
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030279_2

>merge|NZ_CP030279|2|2465096-2465207|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCACCTGGCCAGAAACCTCTACCCCGAGCCCCTTGAGTGGTCACCTGTGCGGCGTCATTCCCGCACAACTGCCCAC

>NZ_CP030279|2|2|2465096-2465207|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	CTGGCCAGAAACCTCTACCCCGAGCCCCTTGA
GTGGTCACCTGTGCGGCGTCATTCCCGCACAACTGCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030279.1\|WP_036942950.1\|2473605_2474727_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP030279.1\|WP_013160070.1\|2472896_2473544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030279.1\|WP_155269328.1\|2455623_2456460_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP030279.1\|WP_013160072.1\|2471178_2471925_+\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_CP030279.1\|WP_036942940.1\|2463262_2464909_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP030279.1\|WP_036943006.1\|2469268_2470795_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP030279.1\|WP_036943004.1\|2467189_2468614_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP030279.1\|WP_013160083.1\|2457706_2458525_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP030279.1\|WP_013160087.1\|2452135_2453014_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP030279.1\|WP_013160067.1\|2475607_2477002_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP030279.1\|WP_013160084.1\|2456570_2457620_-\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|225333
NZ_CP030279.1\|WP_036942947.1\|2472092_2472590_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP030279.1\|WP_143828462.1\|2461229_2461511_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030279.1\|WP_013160080.1\|2460214_2461303_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP030279.1\|WP_013160082.1\|2458623_2459343_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506
NZ_CP030279.1\|WP_036942942.1\|2465357_2465795_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030279.1\|WP_036942932.1\|2453013_2455470_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP030279.1\|WP_036943008.1\|2474891_2475569_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP030279.1\|WP_036942945.1\|2466044_2467016_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_CP030279.1\|WP_013160081.1\|2459339_2460023_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181298

Protein	Function_ID	Function_description	E-value
NZ_CP030279.1\|WP_036942950.1\|2473605_2474727_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.72925e-49
NZ_CP030279.1\|WP_013160083.1\|2457706_2458525_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	9.31165e-61
NZ_CP030279.1\|WP_013160072.1\|2471178_2471925_+\|NAD-dependent-protein-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	7.06066e-122
NZ_CP030279.1\|WP_036942940.1\|2463262_2464909_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.53603e-28
NZ_CP030279.1\|WP_036943006.1\|2469268_2470795_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.94337e-38
NZ_CP030279.1\|WP_036943004.1\|2467189_2468614_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP030279.1\|WP_155269328.1\|2455623_2456460_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.40142e-116
NZ_CP030279.1\|WP_013160087.1\|2452135_2453014_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	8.56637e-108
NZ_CP030279.1\|WP_013160084.1\|2456570_2457620_-\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|225333	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism].	8.63447e-34
NZ_CP030279.1\|WP_036942947.1\|2472092_2472590_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	4.97723e-95
NZ_CP030279.1\|WP_013160080.1\|2460214_2461303_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	1.13032e-20
NZ_CP030279.1\|WP_013160082.1\|2458623_2459343_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	2.44995e-102
NZ_CP030279.1\|WP_013160067.1\|2475607_2477002_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	9.67091e-94
NZ_CP030279.1\|WP_036942932.1\|2453013_2455470_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	7.57226e-18
NZ_CP030279.1\|WP_036943008.1\|2474891_2475569_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.63587e-79
NZ_CP030279.1\|WP_036942945.1\|2466044_2467016_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.09802e-157
NZ_CP030279.1\|WP_013160081.1\|2459339_2460023_-\|SDR-family-oxidoreductase	gnl\|CDD\|181298	PRK08219, PRK08219, SDR family oxidoreductase.	1.09359e-113

>NZ_CP030279.1|WP_036942940.1|2463262_2464909_+|LCP-family-protein
MGLREPPPPPPEPEPASLRSRFAAFTERSDDTGSHGFGWTMLRTTLGSLIPGAGLIGTRLTMIGTLLFMMTVVFGSGVILAAVVHPPALMATVMNSVGLTAIGIMLVAVTIIWMAIVAGTYLVTRPRRMKRWQRIAGAIVVFLMAALVGSVSSVGAAYAFESAIVVSDVFGNSKTRSQTRPLGDWANKDRVNILLLGGDSGADRDEDLGLRTDTVMLASINTHTGNTVFIQLPRNLENVPFPAGSDLAKVYPNGRVWDRSSGTEDNYMLNAVWNEVPLEHPELFRNTDQPGADATKLAVSGITGLTVDYYAMINIDGIQALVDAMGGVVVNINFPIAKGGHVDGYGDEECGVDGNLSVGPDQKLDGADAMWYARSRCNDPDYDYGRMRRQSCLVNAIIRQANPQTMLTRYEAIAAAGKNMMSTDIPESLLDDATNLALQVKDAQVSRVVFSQAIGTAPQVGDINPGNPDYNAIRNRISGAITASDNGTTPSAPASASSSPMATGSAGSASSVASAAGSGSTSASAAGAAATPSGTAENMSGACDYHPN
>NZ_CP030279.1|WP_143828462.1|2461229_2461511_+|hypothetical-protein
MGRLRSLVVVGPLVATRVLQLFIGEPVSGALNALATLVIVLAVVMVVPTRSHRSLSGWLTGADMVDSRSVTPTVAGPGAGDTGVGGSGAADPA
>NZ_CP030279.1|WP_013160080.1|2460214_2461303_+|VanZ-family-protein
MLFLPYVVWSFHRFGQLSFRRIIGWAAVCVYFTGLAVYTLVPFPEDPQAFCASTHVGYNLHPLEFITDIRTQTAGMGLRSALTSAVVLQVVFNVVLFVPLGVLLHRYFRRGAITSTLIGLIMSVCIETTQYTGFFGLLPCAYRVADVDDVITNTAGTLIGALIAPLLLFWMPASRTLTSTRLVARPVTSMRRWVGMVVDGFLFYLIAASSSIAVLVAGRLLSWWPVEAEPEWISPAGDVVALLMVFVIPSLTGRGGSLGQRVVWLTPRWPAAAGSGDGSGGAVGADSSGGTVGGDWPDGAAPDGGQMGGGTYRGGSLDSGSLGSGLPSSGLSDGRTLANGPLAFAGGRGPAGGHAGAPAVHR
>NZ_CP030279.1|WP_013160081.1|2459339_2460023_-|SDR-family-oxidoreductase
MAERRAVLITGATRGIGRAIADELADDWHVLVGGRHPDQVRKVVQALPSAEPFIADLTDAGAMQAAVEQIGHLDAVVHSAGAVVMGPVSELSRQDWRDLYEINVVAVADLTAELLPKLREAHGQVVTINSGSGFHTGPGQTCYAATKHALVAFTDGLREEERGVVRVTSVHPGRVDTDMQVDIQRQLGAQYQPERYLQPADVARAVELALTMRPGANVDTVSVRPAL
>NZ_CP030279.1|WP_013160082.1|2458623_2459343_-|glycerophosphodiester-phosphodiesterase
MTAVWAHRGASAAAPENTLPAFQAAATLGADGVELDVQRTRDGQLVVCHDETIDRTSNGVGNLADYTLSQLKEFDFSAGHPEFTNVAIPTLAEVFDVLGPTGLMINIELKNSVVPYEGMEAQVLALVHAAGWDDKVFYSSFNHRSMRRLAERDYPVGLLYDSVLWRAAKYAAELGASALHPSGRAVRVNPGVVRAAHKRGLSVNVWTIDKPAQIQALLDLEVDAIITNVPDVALGVRDA
>NZ_CP030279.1|WP_013160083.1|2457706_2458525_+|shikimate-dehydrogenase
MTHHAAVIGSPIAHSLSPVLHRAAYQQLGLHDWEYDAIEVTPDTLGEFIASRDNSWAGLSVTAPLKEALIEFGRPDQQSSELQSANTLIFGHPNRLFNTDVTGLRDAMASYDVIMPGTAVIMGAGATARSAISTLVRLGCRVIRVVARDAGRAHASLDRVAALYGTDLQIVDWSGFDALGADSADVLISTAPVQYTPEEAAQLAAVSQVVFDIVYQNYPTNLSRAAIKAGRVSVDGVDLLVHQAIDQVRLMTGEEPLAEPLIEVCRAELAKR
>NZ_CP030279.1|WP_013160084.1|2456570_2457620_-|beta-propeller-fold-lactonase-family-protein
MSTQLCYVSGRRDGLITTVRFDDKAETAEVVSRLNLGPKPMPLELNRERRLLRVATGADPLRVSTLKLLPDGSCQVLSEVNCPLSATYLSFTPDDRMAFVVSYHASRLAWAPVWDNHLIDDSAWHVEQVGEQPHCVEPSPDGRHVYVVELGANRVQGFRVSDGELVADEQIGVQFEHGTGPRHLVFDASGEHGYLIEELGGHIVHLTRDPDSGRLTVAERVPYSDRADDLRPGVHVPSGSTPSLDDQTLRHWGAELALDPQRHWIVASERRASTLNLQALNDDGSFGARLDHVPTEKQPRGMGLIGDHHVIAGAELGDTATIYRVDDQLEPVAEVEGLGGPVWFASIGS
>NZ_CP030279.1|WP_155269328.1|2455623_2456460_-|aldo/keto-reductase
MPTTPTPTVELSGGTRMPMLGMGTWPLKGEECRAAVASAIEQGYRLVDTAEAYGNEEAVGKAVREAGPDRAEIFVTTKFSKQWHSRKGVHEALEHSLERLGLDYVDLFLMHWPMPGEGSYVDAYRGMVELKEQGLAKAIGVSNFKVHHLDDLITEGMTPEVNQIQLDPSRPRLEVRDFLDNHDIVTEAWSPLGRGADGVLNAPAVLDAAKKHGITPAAAVLAWELNQGIVTIPKSANPEHQRTNLEAIGVELSAQEMKAIDALADPNAKIDDSDKTGN
>NZ_CP030279.1|WP_036942932.1|2453013_2455470_+|ABC-transporter-permease
MLRQPRQLISAGIAILLGVAFVAATFVFSASLNAGMTKLVAGMVGDAKVVVSPSENTYTPVTQQLTDTVSKVPGITHSKKIVQGSATLRLDGQDNHALISSQPDLSSQTTLFEGTLAKGDGQVTISKTAADAYRLKVGDKVTLANYDDRAFDETVVGIVNAGNDAVAQPLASWVFAPTEQAMTLASTSGYNMVFLYGNGDAGALRDAVQAAAGVSDAQLTVRTGQDEVQAAMKQMTGSTNSIQYVLLGFAAIALFVGIIVIANTFSILVAQRVRQLALLRCVGATRNQVFGMVFGEAAVLGLVGSAAGILAGFGLAAALIPLASKGAQIPLEFAISPAAVIVPLVVGVLITLAASISPARKATRVAPLAAMRPELAVSKAKRLGVVRAIIGIVLVVGGAAMLALGIVRAKPDTGVGGLAIAIAGGLLSFIGVLLVGRGLIPALARLIGAPLAKSSVSGDLAVGNTRRNPGRAAATANALLVGVTLITLLTVGASTSQASLDRYLSATYPQDAVVSAAKGIDEQALTRIKATDGVQDAALVPSTTTEVSSRDHAAQQRPVMGVDNTAAHLTHFPQRYENLDDNTVRTSDTSVHNGETVTIKGASGTTVQLTAKVSNDYSPSLVVSTTVLSKLDPGAAETAWVQYKSGVNVNTVTTDLGKAVGGLGQVSIDSGAQMRAQFGQMIDIVLAVAVGLLAVAVAIAVIGVANTLGLSVLERTQEIGLLRALGMTRRQVRSMISWEAVMIAVVAAALGLALGVAYGLIGAKVMLGSITSTPFVAGLPWVRLAAIGVIAVAAGWLASLIPASRANRISPSAALATE
>NZ_CP030279.1|WP_013160087.1|2452135_2453014_+|ABC-transporter-ATP-binding-protein
MTTMTQPTTAAVRTVHLTKIYGQGDTQVTALNDVSVEFIRGQFTAIMGPSGSGKSTLMHCAAGLDTPTSGQVFIGQVDATSLSDTNLTLLRRERVGFVFQAFNLLPTMTAEQNILLPLKLAHSKPDRQWLDTIVKVLGLQDRLSHRPAELSGGQQQRVAVARALITRPEVIFADEPTGALDSAASNELLDFLSRSVHELGQTIVMVTHDAHAAGFSDRVLRLADGRIVSDEPVNHPIAGQTPVPTTGFTSGAVAGTPNFAPAPGSAPQMGAANPQRPDDAPDAGLKRQAGDN
>NZ_CP030279.1|WP_036942942.1|2465357_2465795_-|hypothetical-protein
MSSYILRPRIPRRAFVLGSAATVVGLVLVVIGLVQNWAILAIIVLAALLAVGLLTLLMVAYSMVNHRIHIDLDAKGYRVHGPGMDRRGTWAKVTRVAVTPDGSRLMIASGPVKRTYISCPKGGDDPAMQALIKEISAHLPEHSRR
>NZ_CP030279.1|WP_036942945.1|2466044_2467016_+|NAD(P)H-quinone-oxidoreductase
MHAITMDEPGGVDVMSWAEVPIPDPGPGEVLVRTQAAGVNRGDVLQRQGHYPPPAGITDIMGMEALGVIEKLGDGVEGHQVGEQVLALVSGGAYAEFFVVPAGQLLKLPAGIDPLAAAGLVEVAATVVSNFDRVHLSAGETVLIHGGAGGIGTLAIQYAKALGAHVIVTAGSAKKLAYCRKLGADEGFDYHDDWEPQVMMATQDRGVDVILDIVGAKYLEANVRCLADDGRLVIIGMQKGTKGTLNIAVLLNKRGTVTATSLRFRSLASKAAICRRVEEAIWPLLSSGAIKPGNQTQVPMAHASKAHELLESGDNTGKIILVV
>NZ_CP030279.1|WP_036943004.1|2467189_2468614_+|argininosuccinate-synthase
MSKVLTSLPVGQRVGIAFSGGLDTSCAVAWMREKGAIPCTYTADIGQYDEPDIASVPGRAGQYGAELSRLVDCRESLVEEGLSALACGAFHVQSAGRAYFNTTPIGRAVTGTLLVRAMNDDNVSIWGDGSTYKGNDIERFYRYGLMANPSLRIYKPWLDEDFVSELGGRDEMSVWLQKRNLPYRDSKEKAYSTDANIWGATHEAKTLEHLDVSLETVEPIMGVKFWDPSVTIDTEDVTIGFEQGRPVTINGKKFDSAVDLVLEANKVGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLFIAYERLVNAIHNEDTIINYRNEGMRLGRLLYEGRWLDPQSLMIRESIQRWVASVVTGEVTLRLRRGEDYTIVNTDGPAFSYHPERLSMERVQDAAFGPLDRIGQLTMRNLDISDSRSRLEQYASQGQLTGGEAAKLVGALEPGKASEIADHPEHAGTSHATPLDNAAMETGAD
>NZ_CP030279.1|WP_036943006.1|2469268_2470795_-|LCP-family-protein
MALVLFVVVAAAGIYIWRANAGIKRSGAIADKTSQSSDLDLLVMGLDSRVDVNGNALPSDIYDALHSGDASDGGLNSNVLMYVHVPADGSQASVFAIPRDDYVDFPGCPDGVCKGKIKEAYGYAADAKTQELDKQGKTGQDAYQQARDAGRAAEVRTVEQFLGVEIDHFIEVTMVAFFQIAQVVQPITVCVNEKTVDTYSGADFKAGEQDINAEQAMAFVRQRRDTDNPDLAFTDLDRSRRQQAFIASLLVKLKKTNLLTNPGQLDKLVQVAQQNTVLDKNLKISQLTSLATSLEGSKLNFYTLPVESFGTADDGAAINVVDKAKIQGIVRSILHPGQSASPSASASASGSASYSPTYGMGATVSVMNESGVTGAAASLVGQLTGFGFTAGQATNGADILQESSVSYGSAVAGQAKQLAQQLGGLSANADSTLGANAVVVHMGTGFTGWPSASPSAASSAASTGGSSVSPSASSTAIPSAVDANSGGQSGPEPSQLTQISGGGIPCVK
>NZ_CP030279.1|WP_013160072.1|2471178_2471925_+|NAD-dependent-protein-deacylase
MSADQLSRILAPADHVVFFGGAGVSTESGIPDFRSATGLYKTQSGGEFPPEYMLSHSCWADHPEDFYAFYRKNMLHPEAKPNAAHYALARLEKAGRLTAVVTQNIDGLHQMAGSQKVFELHGSVLRNHCVDCHRSYPVEAIEQSTGIPRCTVCNGIIKPDVVLYEEGLDPDVMDGATRAIMAADVLIVGGTSLNVYPAAGLLEYYRGDKLVLINKSATPADNRAQLVIHDSIGKVLGQAVDEVLGDKA
>NZ_CP030279.1|WP_036942947.1|2472092_2472590_-|thiol-peroxidase
MSTTAFQGTPVHTVGELPAVGSQAPAFELVGKDLSTITLKSLRGRRVVLNIFPSLDTGVCATSVRTFNKLAAGLDNTTVLAVSKDLPFAAERFCVAEGIENVVPASAFRKHSFSNYGVLMTDGPLAGLLARSVVVIDENGTVVYNQLVPEIGNEPDYDDAVAALK
>NZ_CP030279.1|WP_013160070.1|2472896_2473544_+|hypothetical-protein
MSRRFATTLAASALSLVVLAGCSTATAGPSSGTPSGTVTAGAASNTSSTAANGSVDVAKAGVEELKGADARTLVDKLEATPLSQRRTDLRASVRADELQLSDTSGNKASVKMPADQFYLSFAPYVNKTHDCTYHSLTTCKAELGNKQMHVTITDAAGATVIDQDLTAADNGFIGVWLPRNITGTLTVSYDGKSASQQISTAKADDPTCLTTLHLA
>NZ_CP030279.1|WP_036942950.1|2473605_2474727_-|HAMP-domain-containing-histidine-kinase
MLTRRSIARRFLTGAAVVVGVAVVTIFVVDALVSPAIFHAHLMQADLSNPETVLRHVEEGMRSSNMIALAVAILIAVLAALLVSLYLATRVSASLAPLAAAARQVAAGDYTARVDAGPLGAEFDELTEAVNAMSQRLASVEQSRTRLFSDLAHEMRTPIAVVQAQLEGIEDGVVGVEDSIPVLRAQAERLTRLSSDIGLLSQAQEHALRYEFAPGEVASVMRGCVDDMALRYREAGVQLTLDVATHARAQLDTARFAQVITNLLANALNATVSAGRGRTGDRGGHVHVGVRRHGNEVAVQVRDDGVGISPEELPHVFDRFARVGPARDRSSGGFGIGLTVARAIMSAHHGRISADSPGPGRGATFTVTVPVLH
>NZ_CP030279.1|WP_036943008.1|2474891_2475569_-|response-regulator-transcription-factor
MIVEDEHSLATVMAGYFTRNGYRAEVVGDGLGAVAAARRLDPSVVILDLGLPSLDGVEVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRSAITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEAVWGVGWSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRMGQGR
>NZ_CP030279.1|WP_013160067.1|2475607_2477002_-|MBL-fold-metallo-hydrolase
MSKPVATLTFLGAARTVTGSKFLLDLNERRLMVDAGMFQGAREWRRRNWDDFPVDPATITDLLITHAHMDHSGYIPALVKHGFHGRIHCTPQTRELTAIVLRDSANLQVNEARDAARGGYSKHNPPLPLYDEADVERSLPLFHDVAFDRDLDLGGGVHARFTRAGHILGSASIRVWLADDPQISVLFSGDLGRDQHPVLRRREEPEGATSVLIESTYGNREHPTGDEEDHEALAGLIRRTIARGGSVLIPAFAVDRTEILIKVLGEMQHAGRIPPVPIFINSPMGSAALDVYQGTGAHAELRADIDISALLNLPTLRDVRTKEESVALNRPAQPCIIISASGMATGGRVVHHLRHMLPDPRNAVVFTGYQALGTRGRSLVEGAKQIKMYGRYVPVKAEVLLDTAFSVHADAPELLEWLAALSPAPQVVYCVHGEPKSAEHLADTISEELGLMAVVPRYGEVVRL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP030279_1	1.1\|390781\|21\|NZ_CP030279\|CRISPRCasFinder	390781-390801	21	NZ_CP035418	Leisingera sp. NJS204 plasmid unnamed1, complete sequence	24862-24882	1	0.952
NZ_CP030279_1	1.1\|390781\|21\|NZ_CP030279\|CRISPRCasFinder	390781-390801	21	NZ_CP041156	Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence	73773-73793	1	0.952
NZ_CP030279_1	1.1\|390781\|21\|NZ_CP030279\|CRISPRCasFinder	390781-390801	21	NZ_CP038237	Leisingera sp. NJS201 plasmid unnamed3, complete sequence	106383-106403	1	0.952
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	47914-47937	2	0.917
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	121074-121097	2	0.917
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP018821	Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence	296836-296859	2	0.917
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	MH444512	Bifidobacterium phage Willi, complete genome	3528-3551	2	0.917
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	MK932884	Bifidobacterium phage PMBT6, complete genome	3528-3551	2	0.917
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	499907-499930	3	0.875
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	NZ_AP014707	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence	49875-49898	3	0.875
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	32428-32451	3	0.875
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	71885-71908	3	0.875
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	KC170282	Uncultured bacterium plasmid pMBUI6, complete sequence	3102-3125	3	0.875
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	GQ919031	Streptomyces phage ZL12, complete genome	49155-49178	3	0.875
NZ_CP030279_1	1.3\|390874\|24\|NZ_CP030279\|CRISPRCasFinder	390874-390897	24	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1387809-1387832	3	0.875
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP054842	Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence	106401-106424	4	0.833
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	415999-416022	4	0.833
NZ_CP030279_1	1.2\|390826\|24\|NZ_CP030279\|CRISPRCasFinder	390826-390849	24	MT939492	Xanthomonas phage Xoo-sp14, complete genome	230325-230348	4	0.833
NZ_CP030279_2	2.1\|2465136\|32\|NZ_CP030279\|CRISPRCasFinder	2465136-2465167	32	NZ_KU254577	Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence	93743-93774	8	0.75
NZ_CP030279_2	2.1\|2465136\|32\|NZ_CP030279\|CRISPRCasFinder	2465136-2465167	32	CP031732	Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence	144379-144410	8	0.75
NZ_CP030279_2	2.1\|2465136\|32\|NZ_CP030279\|CRISPRCasFinder	2465136-2465167	32	NZ_AP015031	Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence	216038-216069	8	0.75

1. spacer 1.1|390781|21|NZ_CP030279|CRISPRCasFinder matches to NZ_CP035418 (Leisingera sp. NJS204 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

2. spacer 1.1|390781|21|NZ_CP030279|CRISPRCasFinder matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

3. spacer 1.1|390781|21|NZ_CP030279|CRISPRCasFinder matches to NZ_CP038237 (Leisingera sp. NJS201 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

4. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aaaccggcggccaagaagcctgca	Protospacer
**.***************** ***

5. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggccgccaagaagcccgca	Protospacer
******** *********** ***

6. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggccgccaagaagcccgca	Protospacer
******** *********** ***

7. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to MH444512 (Bifidobacterium phage Willi, complete genome) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggaaaagaagccggca	Protospacer
**********  ************

8. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to MK932884 (Bifidobacterium phage PMBT6, complete genome) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggaaaagaagccggca	Protospacer
**********  ************

9. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggcaaataagccggcg	Protospacer
*********** ** ********.

10. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to NZ_AP014707 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcgaccgagaagccggcg	Protospacer
*********.**.**********.

11. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aaggcggcgaccaagaagccggcc	Protospacer
*** *****.*************

12. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccagcggtcaagaagccggcg	Protospacer
*****.****.************.

13. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to KC170282 (Uncultured bacterium plasmid pMBUI6, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagcccgcagccaagaagccggct	Protospacer
***** **.**************

14. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagaccgcggccaagaagccggcc	Protospacer
*** * *****************

15. spacer 1.3|390874|24|NZ_CP030279|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 3, identity: 0.875

acggcgtccacggccaagccggca	CRISPR spacer
tcggcgtcgacggcgaagccggca	Protospacer
 ******* ***** *********

16. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to NZ_CP054842 (Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
gattcggcggccaagaagccggcc	Protospacer
.* .*******************

17. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
gagccgccggccaagaagccggtt	Protospacer
.***** ***************.

18. spacer 1.2|390826|24|NZ_CP030279|CRISPRCasFinder matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
aagccggctgccaagaagccgctg	Protospacer
******** ************ ..

19. spacer 2.1|2465136|32|NZ_CP030279|CRISPRCasFinder matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

20. spacer 2.1|2465136|32|NZ_CP030279|CRISPRCasFinder matches to CP031732 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

21. spacer 2.1|2465136|32|NZ_CP030279|CRISPRCasFinder matches to NZ_AP015031 (Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

140946 : 188730

Mycobacterium_phage(33.33%)

integrase,transposase

attL 140943:141002|attR 189817:189882

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
140943:141002	attL	NA	NA	NA	NA
WP_044635852.1\|140946_142257_-\|transposase	ISL3-like element ISPfr18 family transposase	A0A2H4PDF8	Mycobacterium_phage	4.5e-176	69.8
WP_013160219.1\|142501_142918_-	hypothetical protein	NA	NA	NA	NA
WP_055346715.1\|142971_143487_-	hypothetical protein	NA	NA	NA	NA
WP_114178974.1\|143775_145071_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.1e-161	67.9
WP_147628947.1\|145226_145415_-	hypothetical protein	NA	NA	NA	NA
WP_155269314.1\|145838_146273_-	hypothetical protein	NA	NA	NA	NA
WP_155269313.1\|146402_146864_-	hypothetical protein	NA	NA	NA	NA
WP_036940981.1\|147519_149052_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_036940978.1\|149213_150404_+	acetate kinase	NA	NA	NA	NA
WP_051733982.1\|150507_151314_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_036940975.1\|151313_152108_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_044635847.1\|153226_153736_+	DUF4395 domain-containing protein	NA	NA	NA	NA
WP_036940972.1\|153740_154157_+	thioredoxin family protein	NA	NA	NA	NA
WP_036940969.1\|154380_155343_+	glycosyltransferase	NA	NA	NA	NA
WP_114178746.1\|155339_156182_+	glycosyltransferase	NA	NA	NA	NA
WP_162786059.1\|156535_157360_+	glycosyltransferase	NA	NA	NA	NA
WP_044635845.1\|160137_160908_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.6e-11	26.6
WP_044635844.1\|160907_161792_-	ABC transporter permease	NA	NA	NA	NA
WP_036940964.1\|163809_164997_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	7.9e-95	45.5
WP_114178750.1\|165436_165595_+	hypothetical protein	NA	NA	NA	NA
WP_162786060.1\|165617_166073_+	glucosaminidase	S5M633	Brevibacillus_phage	2.7e-19	38.7
WP_036940960.1\|166089_167088_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.8e-71	44.5
WP_114178976.1\|167092_168487_+	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_036940954.1\|168731_169613_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_114178754.1\|169674_170073_-	DUF2304 domain-containing protein	NA	NA	NA	NA
WP_112317700.1\|170069_170795_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_013159973.1\|170906_171776_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	7.8e-92	57.6
WP_114178756.1\|171786_172542_+	hypothetical protein	NA	NA	NA	NA
WP_114178758.1\|172664_173972_+\|transposase	ISL3-like element ISPfr6 family transposase	A0A2H4PDF8	Mycobacterium_phage	8.7e-188	72.8
WP_027587600.1\|175016_175598_-	recombinase family protein	A0A219YA40	Aeromonas_phage	4.2e-17	36.8
WP_013162108.1\|175594_176374_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_013162109.1\|176370_176703_-	hypothetical protein	NA	NA	NA	NA
WP_036940636.1\|177072_177546_+	Hsp20 family protein	NA	NA	NA	NA
WP_051232795.1\|177785_178250_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_080516165.1\|178406_180374_-	KUP/HAK/KT family potassium transporter	A7K9V6	Acanthocystis_turfacea_chlorella_virus	6.3e-73	31.2
WP_013162114.1\|180606_181914_-\|transposase	ISL3-like element ISPfr6 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-188	73.0
WP_013162099.1\|182116_182590_-	hypothetical protein	NA	NA	NA	NA
WP_013162098.1\|182599_183028_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044657895.1\|183097_185230_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_036939336.1\|185707_185971_-	hypothetical protein	NA	NA	NA	NA
WP_013162095.1\|185974_186277_-	DUF4193 domain-containing protein	NA	NA	NA	NA
WP_013162094.1\|186860_187802_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.1e-17	24.2
WP_138427997.1\|187798_188146_+	hypothetical protein	NA	NA	NA	NA
WP_013162093.1\|188205_188730_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
189817:189882	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2304821 : 2372004

Bacillus_phage(33.33%)

integrase,transposase,protease

attL 2312921:2312956|attR 2377232:2377267

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036942782.1\|2304821_2306129_+\|transposase	ISL3-like element ISPfr4 family transposase	A0A2H4PDF8	Mycobacterium_phage	7.4e-195	77.2
WP_060762126.1\|2306275_2307694_+\|transposase	IS30-like element ISPfr9 family transposase	W5R8L2	Staphylococcus_phage	2.1e-33	36.7
WP_036941092.1\|2307843_2309199_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	5.5e-92	42.8
WP_080713575.1\|2311224_2312592_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
2312921:2312956	attL	NA	NA	NA	NA
WP_048733818.1\|2313144_2314587_+	PDZ domain-containing protein	NA	NA	NA	NA
WP_129931506.1\|2314590_2315331_-	hypothetical protein	NA	NA	NA	NA
WP_036942026.1\|2315489_2318885_+	PPi-type phosphoenolpyruvate carboxykinase	NA	NA	NA	NA
WP_036942037.1\|2319766_2320288_+	EXLDI protein	NA	NA	NA	NA
WP_036942040.1\|2320407_2321262_+	aldo/keto reductase	NA	NA	NA	NA
WP_013160148.1\|2321304_2321949_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	5.1e-40	41.9
WP_036940051.1\|2322040_2322775_-	DUF881 domain-containing protein	NA	NA	NA	NA
WP_036940054.1\|2322953_2323241_+	cell division protein CrgA	NA	NA	NA	NA
WP_162786093.1\|2323645_2323951_+	DUF4862 family protein	NA	NA	NA	NA
WP_114178938.1\|2323947_2324589_+	DUF4862 family protein	NA	NA	NA	NA
WP_036940059.1\|2324815_2326162_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_013160143.1\|2326172_2327147_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_036940063.1\|2327143_2328256_-	pyruvate dehydrogenase	NA	NA	NA	NA
WP_080713501.1\|2328400_2329123_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_051733938.1\|2331058_2332702_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.5e-19	23.7
WP_080713503.1\|2333042_2333975_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_036940097.1\|2333974_2334337_-	cupin domain-containing protein	NA	NA	NA	NA
WP_013160136.1\|2334497_2336000_-	amino acid permease	NA	NA	NA	NA
WP_013160135.1\|2336252_2337143_+	dihydropteroate synthase	NA	NA	NA	NA
WP_013160134.1\|2337220_2337913_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013160133.1\|2337912_2339646_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.7e-34	25.9
WP_013160132.1\|2339642_2341706_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.3e-59	29.0
WP_013160131.1\|2341997_2342897_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_112317753.1\|2342914_2343634_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_112317816.1\|2343651_2344101_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_013160128.1\|2344512_2345085_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013160127.1\|2345081_2345747_-	hypothetical protein	NA	NA	NA	NA
WP_013160126.1\|2345820_2346264_+	SRPBCC family protein	NA	NA	NA	NA
WP_147628971.1\|2346267_2346732_-	hypothetical protein	NA	NA	NA	NA
WP_147628972.1\|2346772_2347159_-	hypothetical protein	NA	NA	NA	NA
WP_013160123.1\|2350813_2351413_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_036940077.1\|2351426_2352737_-	Fic family protein	D7RWK9	Brochothrix_phage	1.4e-12	23.9
WP_060762137.1\|2353142_2353712_+	helix-turn-helix transcriptional regulator	A0A2H4PE70	Mycobacterium_phage	7.5e-11	39.7
WP_013160119.1\|2353742_2355032_+\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	5.3e-36	29.1
WP_013160118.1\|2355262_2356219_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_013160117.1\|2356215_2356836_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_013160116.1\|2357117_2357318_-	hypothetical protein	NA	NA	NA	NA
WP_162786094.1\|2357372_2357537_-	hypothetical protein	NA	NA	NA	NA
WP_013160114.1\|2357608_2357818_-	hypothetical protein	NA	NA	NA	NA
WP_013160112.1\|2357852_2358152_-	hypothetical protein	NA	NA	NA	NA
WP_114179013.1\|2358387_2360127_+	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_112317817.1\|2360392_2361448_-	dihydroorotate dehydrogenase-like protein	NA	NA	NA	NA
WP_036940115.1\|2361542_2365136_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_013160108.1\|2365315_2366947_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_013160106.1\|2367270_2367588_-	thiamine-binding protein	NA	NA	NA	NA
WP_013160105.1\|2367791_2368286_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_155269295.1\|2368264_2368414_+	hypothetical protein	NA	NA	NA	NA
WP_097776134.1\|2368752_2369962_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.7e-26	31.0
WP_114178940.1\|2370162_2372004_+\|transposase	IS30 family transposase	A0A2H4PDF8	Mycobacterium_phage	5.1e-101	77.1
2377232:2377267	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2480896 : 2556553

Mycobacterium_phage(18.75%)

tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013160063.1\|2480896_2482171_-\|tRNA	serine--tRNA ligase	A0A2K9L088	Tupanvirus	2.8e-66	35.8
WP_013160062.1\|2482318_2483923_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA
WP_036942954.1\|2483802_2484789_-	prephenate dehydratase	NA	NA	NA	NA
WP_013160060.1\|2485346_2486027_+	hypothetical protein	NA	NA	NA	NA
WP_162630576.1\|2486319_2487273_-	aminotransferase class IV	NA	NA	NA	NA
WP_114178950.1\|2487265_2488165_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	4.8e-52	53.3
WP_162786098.1\|2487864_2489016_-	hypothetical protein	NA	NA	NA	NA
WP_036942956.1\|2489253_2490243_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_036942958.1\|2490444_2491644_+	ABC transporter permease	NA	NA	NA	NA
WP_036942960.1\|2491640_2493461_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	27.1
WP_013160054.1\|2493515_2495084_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	8.5e-105	42.3
WP_080713600.1\|2495146_2495659_+	type I restriction endonuclease subunit S	NA	NA	NA	NA
WP_036942973.1\|2495640_2496246_+	type-1 restriction enzyme EcoR124II specificity protein	NA	NA	NA	NA
WP_036942976.1\|2496242_2499281_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_081014329.1\|2499828_2500923_+	3'-5' exonuclease	NA	NA	NA	NA
WP_013160051.1\|2501037_2501991_-	hypothetical protein	A0A0K1L687	Scale_drop_disease_virus	7.9e-21	43.9
WP_013160035.1\|2503996_2504803_-	hypothetical protein	NA	NA	NA	NA
WP_013160036.1\|2504980_2506516_-	gluconokinase	NA	NA	NA	NA
WP_013160037.1\|2506774_2507638_-	Fpg/Nei family DNA glycosylase	NA	NA	NA	NA
WP_013160038.1\|2507630_2508356_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_162786099.1\|2508831_2509527_-	hypothetical protein	NA	NA	NA	NA
WP_114178957.1\|2509523_2510744_-	serine/threonine protein kinase	A0A1M7XTW9	Cedratvirus	5.0e-12	26.9
WP_013160040.1\|2511058_2511667_-	LysM peptidoglycan-binding domain-containing protein	A0A1J0GVU2	Streptomyces_phage	1.2e-27	44.1
WP_044635867.1\|2511885_2513190_-	citrate synthase	NA	NA	NA	NA
WP_013160042.1\|2513692_2514496_+	EcsC family protein	NA	NA	NA	NA
WP_055346839.1\|2514606_2515440_-	DUF1648 domain-containing protein	NA	NA	NA	NA
WP_157761831.1\|2515654_2517259_-	S8 family serine peptidase	NA	NA	NA	NA
WP_013160045.1\|2517280_2518429_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.6e-31	29.8
WP_080713591.1\|2518601_2519561_-	phosphopantothenoylcysteine decarboxylase	Q9HH70	Methanothermobacter_phage	1.1e-25	39.4
WP_013160047.1\|2520198_2520543_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157763648.1\|2520545_2521289_-	hypothetical protein	NA	NA	NA	NA
WP_013160195.1\|2521316_2522624_+\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-169	68.1
WP_063493589.1\|2522660_2522969_+	hypothetical protein	NA	NA	NA	NA
WP_162786100.1\|2522991_2523246_+\|transposase	transposase	NA	NA	NA	NA
WP_080713571.1\|2523236_2524181_-	hypothetical protein	NA	NA	NA	NA
WP_112317757.1\|2524892_2525252_+	hypothetical protein	NA	NA	NA	NA
WP_097776134.1\|2526278_2527489_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.7e-26	31.0
WP_013160028.1\|2527576_2527774_+	hypothetical protein	NA	NA	NA	NA
WP_036940431.1\|2528503_2530918_+	nitric oxide reductase	NA	NA	NA	NA
WP_036940428.1\|2531926_2532691_+	slipin family protein	A0A2K9L035	Tupanvirus	5.0e-26	32.6
WP_044636453.1\|2532804_2533227_+	hypothetical protein	NA	NA	NA	NA
WP_114179018.1\|2533494_2534604_-	hypothetical protein	NA	NA	NA	NA
WP_013160019.1\|2534787_2535351_+	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_013160018.1\|2535413_2536508_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_036943364.1\|2536554_2536809_+	hypothetical protein	NA	NA	NA	NA
WP_013160015.1\|2537420_2538209_-	oxidoreductase	NA	NA	NA	NA
WP_013160014.1\|2538492_2539092_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
WP_036940611.1\|2539095_2540100_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_036940614.1\|2540238_2540619_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_013160011.1\|2540615_2541080_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_013160010.1\|2541135_2542050_+	peptidase E	NA	NA	NA	NA
WP_013160009.1\|2542056_2542752_+	response regulator transcription factor	NA	NA	NA	NA
WP_080713524.1\|2542748_2544176_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.4e-21	25.1
WP_112317820.1\|2544204_2545392_-	MFS transporter	NA	NA	NA	NA
WP_013160006.1\|2545463_2546462_-	3-methyladenine DNA glycosylase	NA	NA	NA	NA
WP_013160005.1\|2547258_2548035_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	6.7e-18	29.8
WP_013160004.1\|2548108_2549161_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_080516022.1\|2551198_2552386_-	SPASM domain-containing protein	NA	NA	NA	NA
WP_013160195.1\|2552420_2553728_-\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-169	68.1
WP_114178960.1\|2555221_2556553_+\|transposase	ISL3-like element ISPfr3 family transposase	A0A2H4PDF8	Mycobacterium_phage	9.8e-195	77.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP030279

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection