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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP031247 Streptococcus pneumoniae strain M23734 chromosome, complete genome 3 crisprs DinG,cas3,PrimPol,DEDDh,RT 0 0 137 0

Results visualization

1. NZ_CP031247
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031247_1 390141-390223 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031247_2 427053-427165 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031247_3 1355892-1355987 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 7019 8 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_2 10562 : 17316 8 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_3 22804 : 34159 9 unidentified_phage(20.0%) tRNA NA
DBSCAN-SWA_4 37350 : 41588 5 Moumouvirus(33.33%) tRNA NA
DBSCAN-SWA_5 51123 : 60131 7 Bacillus_phage(60.0%) transposase NA
DBSCAN-SWA_6 66783 : 67791 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_7 78580 : 143218 67 Streptococcus_phage(16.0%) transposase,tRNA,holin NA
DBSCAN-SWA_8 161023 : 170293 9 Mycoplasma_phage(40.0%) protease NA
DBSCAN-SWA_9 173411 : 187208 11 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_10 201556 : 205031 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 208097 : 208694 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_12 220255 : 229383 7 Anomala_cuprea_entomopoxvirus(25.0%) transposase NA
DBSCAN-SWA_13 236587 : 253583 18 Staphylococcus_phage(16.67%) protease NA
DBSCAN-SWA_14 257346 : 258961 2 Indivirus(100.0%) holin NA
DBSCAN-SWA_15 264293 : 270110 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_16 275739 : 281133 4 Acidithiobacillus_phage(33.33%) NA NA
DBSCAN-SWA_17 287608 : 289985 2 Cyanophage(50.0%) NA NA
DBSCAN-SWA_18 298788 : 299340 1 Penguinpox_virus(100.0%) NA NA
DBSCAN-SWA_19 303499 : 311674 8 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_20 317773 : 319880 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_21 323849 : 326480 2 Caulobacter_phage(50.0%) NA NA
DBSCAN-SWA_22 338388 : 341997 3 Enterococcus_phage(66.67%) NA NA
DBSCAN-SWA_23 351115 : 354880 4 Streptococcus_phage(50.0%) transposase NA
DBSCAN-SWA_24 364546 : 377381 14 Streptococcus_phage(66.67%) integrase attL 368599:368613|attR 375598:375612
DBSCAN-SWA_25 382674 : 393132 4 Klebsiella_phage(50.0%) NA NA
DBSCAN-SWA_26 400325 : 421906 26 Streptococcus_phage(95.0%) integrase,protease attL 392650:392665|attR 424991:425006
DBSCAN-SWA_27 435943 : 439594 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_28 444124 : 447735 4 Streptococcus_phage(100.0%) integrase attL 422374:422389|attR 456174:456189
DBSCAN-SWA_29 458908 : 467623 7 Sphingobium_phage(25.0%) NA NA
DBSCAN-SWA_30 477961 : 478921 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_31 482771 : 485063 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_32 496244 : 499965 3 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_33 507164 : 507386 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_34 510546 : 511575 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_35 520010 : 521168 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_36 533251 : 544029 11 Anomala_cuprea_entomopoxvirus(20.0%) NA NA
DBSCAN-SWA_37 547506 : 548106 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_38 570620 : 576594 7 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_39 586241 : 597932 12 Staphylococcus_phage(20.0%) NA NA
DBSCAN-SWA_40 601111 : 606370 5 Agrobacterium_phage(33.33%) NA NA
DBSCAN-SWA_41 610238 : 611207 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_42 616587 : 632895 19 Streptococcus_phage(66.67%) protease,bacteriocin NA
DBSCAN-SWA_43 639253 : 643709 4 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_44 652854 : 653482 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_45 656823 : 659925 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_46 663616 : 672017 7 Gordonia_phage(33.33%) integrase attL 667055:667114|attR 669460:670002
DBSCAN-SWA_47 677746 : 679972 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_48 686369 : 695027 8 Stx2-converting_phage(20.0%) NA NA
DBSCAN-SWA_49 701829 : 706664 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_50 710917 : 719270 10 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_51 727226 : 732562 5 Enterococcus_phage(33.33%) protease NA
DBSCAN-SWA_52 741660 : 764355 21 Bacillus_virus(11.11%) tRNA NA
DBSCAN-SWA_53 773416 : 784340 10 Indivirus(16.67%) NA NA
DBSCAN-SWA_54 788731 : 793083 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_55 796767 : 801497 6 Streptococcus_phage(40.0%) protease NA
DBSCAN-SWA_56 807383 : 811609 2 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_57 817073 : 818459 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_58 824259 : 825750 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_59 829289 : 833469 6 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_60 838161 : 838803 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_61 845571 : 846540 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_62 851383 : 856792 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_63 863195 : 864887 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_64 871923 : 872481 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_65 896282 : 897275 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_66 918798 : 922056 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_67 927000 : 931373 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_68 935334 : 986390 47 Moumouvirus(14.29%) protease,tRNA,bacteriocin NA
DBSCAN-SWA_69 990899 : 996794 7 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_70 1000634 : 1010237 7 Klosneuvirus(40.0%) transposase NA
DBSCAN-SWA_71 1021867 : 1023475 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_72 1028617 : 1030300 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_73 1046272 : 1048597 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_74 1056061 : 1056802 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_75 1061790 : 1063491 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_76 1066941 : 1141729 69 Escherichia_phage(13.33%) protease,transposase,integrase,tRNA,holin attL 1073141:1073176|attR 1104498:1104533
DBSCAN-SWA_77 1147544 : 1151099 4 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_78 1158675 : 1160781 1 Enterobacteria_phage(100.0%) protease NA
DBSCAN-SWA_79 1166072 : 1166267 1 Thermoanaerobacterium_phage(100.0%) NA NA
DBSCAN-SWA_80 1189284 : 1189839 1 Pneumococcus_phage(100.0%) NA NA
DBSCAN-SWA_81 1192979 : 1196758 3 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_82 1204609 : 1211186 2 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_83 1218121 : 1237645 15 Paramecium_bursaria_Chlorella_virus(14.29%) protease,tRNA NA
DBSCAN-SWA_84 1244650 : 1245415 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_85 1265628 : 1269121 3 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_86 1277071 : 1280957 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_87 1284150 : 1338077 53 Staphylococcus_phage(33.33%) protease,tRNA,bacteriocin NA
DBSCAN-SWA_88 1344379 : 1345021 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_89 1348261 : 1353435 5 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_90 1368158 : 1368857 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_91 1376662 : 1377427 1 Streptococcus_phi-m46.1-like_phage(100.0%) NA NA
DBSCAN-SWA_92 1392292 : 1509346 118 Streptococcus_phage(64.86%) terminase,bacteriocin,protease,portal,head,integrase,tRNA,capsid,holin attL 1427476:1427496|attR 1462967:1462987
DBSCAN-SWA_93 1516481 : 1519676 3 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_94 1523564 : 1524917 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_95 1528931 : 1532671 3 Bacillus_virus(50.0%) protease NA
DBSCAN-SWA_96 1545092 : 1545797 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_97 1551457 : 1557062 6 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_98 1575318 : 1576203 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_99 1601602 : 1602460 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_100 1612850 : 1614614 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_101 1623934 : 1626193 1 Iris_mild_mosaic_virus(100.0%) NA NA
DBSCAN-SWA_102 1629710 : 1633108 2 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_103 1641481 : 1661651 17 Bacillus_phage(44.44%) transposase,tRNA NA
DBSCAN-SWA_104 1677466 : 1687226 9 Gordonia_phage(25.0%) tRNA NA
DBSCAN-SWA_105 1714456 : 1715866 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_106 1735246 : 1736131 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_107 1741507 : 1742896 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_108 1751572 : 1752214 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_109 1766349 : 1768424 3 Heterosigma_akashiwo_virus(50.0%) NA NA
DBSCAN-SWA_110 1774389 : 1783795 5 Tetraselmis_virus(25.0%) NA NA
DBSCAN-SWA_111 1791638 : 1795814 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_112 1806760 : 1807732 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_113 1812722 : 1815310 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_114 1818884 : 1820240 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_115 1842578 : 1847717 5 Cedratvirus(33.33%) NA NA
DBSCAN-SWA_116 1853802 : 1863791 13 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_117 1867482 : 1872583 4 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_118 1880468 : 1891731 11 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_119 1895007 : 1911591 14 Acinetobacter_phage(37.5%) transposase NA
DBSCAN-SWA_120 1915194 : 1916346 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_121 1935480 : 1938409 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_122 1942529 : 1946080 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_123 1949084 : 1950237 2 Pneumococcus_phage(50.0%) NA NA
DBSCAN-SWA_124 1966442 : 1967069 1 Abalone_herpesvirus(100.0%) NA NA
DBSCAN-SWA_125 1972875 : 1974855 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_126 1985530 : 1994519 10 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_127 1999067 : 1999700 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_128 2002756 : 2008355 5 Pandoravirus(66.67%) NA NA
DBSCAN-SWA_129 2023157 : 2024675 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_130 2046284 : 2049077 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_131 2053800 : 2054502 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_132 2059727 : 2066603 4 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_133 2073412 : 2076379 2 Feldmannia_species_virus(50.0%) tRNA NA
DBSCAN-SWA_134 2081262 : 2083599 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_135 2091746 : 2092235 2 Macacine_betaherpesvirus(100.0%) transposase NA
DBSCAN-SWA_136 2096733 : 2098708 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_137 2109772 : 2111089 1 Erysipelothrix_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage