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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP031254 Haemophilus influenzae strain M25588 chromosome, complete genome 1 crisprs DinG,DEDDh,cas3,csa3 0 0 146 0

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1. NZ_CP031254
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031254_1 1309675-1309823 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 9407 8 Planktothrix_phage(40.0%) NA NA
DBSCAN-SWA_2 13483 : 19749 7 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_3 27215 : 32441 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_4 38066 : 40164 3 Pithovirus(50.0%) NA NA
DBSCAN-SWA_5 62543 : 63497 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_6 67372 : 69339 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_7 73982 : 74909 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_8 79096 : 80608 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_9 88565 : 93696 4 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_10 100867 : 103603 3 Planktothrix_phage(66.67%) NA NA
DBSCAN-SWA_11 109246 : 112652 3 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_12 117110 : 121022 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_13 130370 : 133236 3 Chrysochromulina_ericina_virus(50.0%) NA NA
DBSCAN-SWA_14 137539 : 146608 9 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_15 157244 : 157892 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_16 165804 : 167229 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_17 174657 : 177472 4 Macacine_betaherpesvirus(33.33%) transposase NA
DBSCAN-SWA_18 181573 : 185281 4 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_19 194214 : 194475 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_20 202884 : 209648 3 Rhizobium_phage(50.0%) NA NA
DBSCAN-SWA_21 213035 : 214583 1 Micromonas_sp._RCC1109_virus(100.0%) NA NA
DBSCAN-SWA_22 218978 : 219464 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_23 234822 : 253502 19 Indivirus(22.22%) tRNA NA
DBSCAN-SWA_24 264322 : 277294 13 Staphylococcus_phage(14.29%) tRNA,capsid NA
DBSCAN-SWA_25 280421 : 283975 2 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_26 292419 : 295660 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_27 299799 : 304631 6 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_28 308544 : 327253 15 Leptospira_phage(16.67%) NA NA
DBSCAN-SWA_29 330328 : 352374 17 Lactococcus_phage(22.22%) NA NA
DBSCAN-SWA_30 365942 : 375868 11 Vibrio_phage(20.0%) NA NA
DBSCAN-SWA_31 379130 : 380651 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_32 389112 : 397242 6 Klosneuvirus(25.0%) tRNA NA
DBSCAN-SWA_33 422819 : 435228 14 Planktothrix_phage(14.29%) tRNA NA
DBSCAN-SWA_34 438342 : 445190 4 Burkholderia_phage(50.0%) NA NA
DBSCAN-SWA_35 453757 : 460707 3 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_36 472626 : 474486 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_37 484819 : 485857 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_38 489761 : 492533 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_39 499936 : 500785 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_40 518724 : 525056 9 Streptococcus_phage(20.0%) protease NA
DBSCAN-SWA_41 530909 : 537030 3 Insectomime_virus(50.0%) tRNA NA
DBSCAN-SWA_42 542291 : 543041 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_43 556810 : 557605 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_44 572216 : 573104 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_45 581320 : 584717 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_46 589379 : 598800 10 Tupanvirus(25.0%) tRNA NA
DBSCAN-SWA_47 602023 : 609991 8 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_48 614093 : 617445 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_49 635752 : 637738 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_50 644862 : 646395 2 Synechococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_51 650054 : 650624 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_52 653982 : 655167 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_53 658220 : 658946 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_54 663668 : 668683 4 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_55 673286 : 679612 6 Synechococcus_phage(33.33%) transposase NA
DBSCAN-SWA_56 684849 : 686809 2 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_57 694304 : 701898 7 Vibrio_phage(20.0%) tRNA NA
DBSCAN-SWA_58 713302 : 723348 3 Invertebrate_iridescent_virus(33.33%) NA NA
DBSCAN-SWA_59 727748 : 733812 6 Caulobacter_phage(33.33%) NA NA
DBSCAN-SWA_60 738571 : 793969 57 uncultured_Caudovirales_phage(43.75%) head,terminase,portal,protease,tail,capsid NA
DBSCAN-SWA_61 799215 : 805086 4 Enterobacteria_phage(33.33%) integrase attL 796643:796659|attR 806281:806297
DBSCAN-SWA_62 812170 : 818725 7 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_63 825129 : 830446 5 uncultured_Mediterranean_phage(33.33%) tRNA NA
DBSCAN-SWA_64 836716 : 841624 5 Bodo_saltans_virus(33.33%) NA NA
DBSCAN-SWA_65 846340 : 851839 6 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_66 855329 : 863390 6 Salmonella_phage(25.0%) tRNA NA
DBSCAN-SWA_67 870095 : 877802 10 unidentified_phage(20.0%) tRNA NA
DBSCAN-SWA_68 884071 : 884992 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_69 888398 : 892383 4 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_70 909269 : 910586 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_71 918666 : 929897 13 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_72 934791 : 935343 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_73 941545 : 943898 2 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_74 953466 : 954783 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_75 960382 : 961825 1 Escherichia_phage(100.0%) tRNA NA
DBSCAN-SWA_76 964918 : 965764 1 Salicola_phage(100.0%) NA NA
DBSCAN-SWA_77 978678 : 979266 1 Ugandan_cassava_brown_streak_virus(100.0%) NA NA
DBSCAN-SWA_78 985844 : 989337 2 Xanthomonas_phage(50.0%) NA NA
DBSCAN-SWA_79 999659 : 1001501 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_80 1005578 : 1006553 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_81 1009685 : 1022788 12 uncultured_Mediterranean_phage(20.0%) tRNA NA
DBSCAN-SWA_82 1030772 : 1032569 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_83 1039367 : 1050026 8 Staphylococcus_phage(40.0%) NA NA
DBSCAN-SWA_84 1056965 : 1060772 4 Morganella_phage(50.0%) NA NA
DBSCAN-SWA_85 1064143 : 1066951 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_86 1072175 : 1073312 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_87 1078262 : 1083910 5 Tetraselmis_virus(66.67%) NA NA
DBSCAN-SWA_88 1094697 : 1096068 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_89 1100638 : 1106385 6 Prochlorococcus_phage(25.0%) protease NA
DBSCAN-SWA_90 1118889 : 1120182 2 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_91 1124823 : 1128362 4 Saccharomonospora_phage(25.0%) NA NA
DBSCAN-SWA_92 1134655 : 1139065 3 Pandoravirus(50.0%) tRNA NA
DBSCAN-SWA_93 1149330 : 1150620 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_94 1156640 : 1161892 5 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_95 1168032 : 1169169 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_96 1175820 : 1185655 11 Faustovirus(16.67%) tRNA NA
DBSCAN-SWA_97 1194078 : 1204790 8 Bacillus_phage(40.0%) tRNA NA
DBSCAN-SWA_98 1208769 : 1209483 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_99 1222204 : 1225516 4 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_100 1229160 : 1230939 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_101 1236888 : 1238949 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_102 1249841 : 1254849 5 Equid_alphaherpesvirus(25.0%) NA NA
DBSCAN-SWA_103 1266164 : 1272678 5 Catovirus(33.33%) NA NA
DBSCAN-SWA_104 1285593 : 1290204 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_105 1298010 : 1303597 5 Dickeya_phage(33.33%) NA NA
DBSCAN-SWA_106 1309944 : 1310493 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_107 1314896 : 1321157 5 Stx_converting_phage(25.0%) NA NA
DBSCAN-SWA_108 1325985 : 1327301 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_109 1336487 : 1337543 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_110 1346158 : 1347220 1 Bodo_saltans_virus(100.0%) protease NA
DBSCAN-SWA_111 1350403 : 1354635 4 Dickeya_phage(33.33%) NA NA
DBSCAN-SWA_112 1360693 : 1362775 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_113 1371225 : 1374768 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_114 1378415 : 1381484 3 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_115 1387093 : 1392120 5 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_116 1400000 : 1403553 3 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_117 1411167 : 1427849 15 Organic_Lake_phycodnavirus(14.29%) tRNA NA
DBSCAN-SWA_118 1434675 : 1544295 117 Mannheimia_phage(21.05%) integrase,terminase,portal,protease,tRNA,tail,holin,bacteriocin,transposase attL 1439512:1439530|attR 1509756:1509774
DBSCAN-SWA_119 1548884 : 1550847 2 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_120 1554640 : 1555968 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_121 1560525 : 1562196 1 Escherichia_phage(100.0%) tRNA NA
DBSCAN-SWA_122 1572274 : 1574740 1 Dickeya_phage(100.0%) NA NA
DBSCAN-SWA_123 1579051 : 1584533 3 Catovirus(50.0%) tRNA NA
DBSCAN-SWA_124 1590415 : 1591688 2 uncultured_Caudovirales_phage(50.0%) tRNA NA
DBSCAN-SWA_125 1602462 : 1619583 16 Acinetobacter_phage(33.33%) tRNA NA
DBSCAN-SWA_126 1627314 : 1641429 19 Haemophilus_phage(40.0%) holin NA
DBSCAN-SWA_127 1649678 : 1651406 2 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_128 1656668 : 1659825 4 uncultured_Caudovirales_phage(50.0%) tRNA NA
DBSCAN-SWA_129 1665888 : 1666341 1 Pseudomonas_phage(100.0%) protease NA
DBSCAN-SWA_130 1670585 : 1671242 1 Cellulophaga_phage(100.0%) NA NA
DBSCAN-SWA_131 1682129 : 1686351 3 Bacillus_phage(33.33%) protease NA
DBSCAN-SWA_132 1695008 : 1702048 5 Virus_Rctr197k(33.33%) NA NA
DBSCAN-SWA_133 1705196 : 1717329 13 Burkholderia_phage(12.5%) integrase,tRNA,transposase attL 1692784:1692798|attR 1716769:1716783
DBSCAN-SWA_134 1720760 : 1736618 16 Staphylococcus_phage(28.57%) tRNA,lysis NA
DBSCAN-SWA_135 1739727 : 1745463 2 Liberibacter_phage(50.0%) NA NA
DBSCAN-SWA_136 1752168 : 1755943 3 Bandra_megavirus(50.0%) tRNA NA
DBSCAN-SWA_137 1759991 : 1762634 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_138 1767280 : 1768672 1 uncultured_Mediterranean_phage(100.0%) protease NA
DBSCAN-SWA_139 1774816 : 1776487 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_140 1779662 : 1781702 1 Acidianus_filamentous_virus(100.0%) NA NA
DBSCAN-SWA_141 1787044 : 1788370 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_142 1791980 : 1796440 3 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_143 1803557 : 1809860 5 Erysipelothrix_phage(25.0%) NA NA
DBSCAN-SWA_144 1813250 : 1813535 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_145 1822405 : 1832148 8 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_146 1847280 : 1848382 2 uncultured_Caudovirales_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage