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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP031246 Streptococcus pneumoniae strain M26368 chromosome, complete genome 3 crisprs cas3,DEDDh,DinG 0 0 138 0

Results visualization

1. NZ_CP031246
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031246_1 99789-99874 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031246_2 654880-654975 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031246_3 1743892-1743963 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 4454 3 Temperate_phage(50.0%) NA NA
DBSCAN-SWA_2 8376 : 17275 9 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_3 28228 : 30208 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_4 36014 : 36641 1 Abalone_herpesvirus(100.0%) NA NA
DBSCAN-SWA_5 60176 : 61082 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_6 70044 : 72129 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_7 78040 : 83330 4 Streptomyces_phage(33.33%) NA NA
DBSCAN-SWA_8 91513 : 94442 5 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_9 106395 : 107547 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_10 111150 : 137940 24 Acinetobacter_phage(25.0%) NA NA
DBSCAN-SWA_11 147122 : 150514 3 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_12 154204 : 164193 13 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_13 170392 : 175546 4 Indivirus(33.33%) NA NA
DBSCAN-SWA_14 190987 : 192244 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_15 200974 : 202354 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_16 207124 : 209712 3 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_17 224614 : 228028 3 Mycoplasma_phage(50.0%) NA NA
DBSCAN-SWA_18 236178 : 240354 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_19 248197 : 257604 4 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_20 263569 : 265644 3 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_21 277621 : 278263 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_22 287364 : 288753 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_23 293994 : 294879 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_24 316053 : 317463 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_25 344578 : 354329 8 Synechococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_26 370137 : 390250 16 Bacillus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_27 397237 : 400635 2 Yersinia_phage(50.0%) tRNA NA
DBSCAN-SWA_28 404152 : 406411 1 Iris_mild_mosaic_virus(100.0%) NA NA
DBSCAN-SWA_29 415370 : 417134 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_30 427880 : 428738 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_31 457961 : 458846 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_32 477099 : 482704 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_33 488371 : 489076 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_34 495131 : 596988 88 Streptococcus_phage(29.63%) holin,protease,tRNA,bacteriocin,transposase NA
DBSCAN-SWA_35 600054 : 618625 14 Synechococcus_phage(22.22%) NA NA
DBSCAN-SWA_36 633458 : 634223 1 Streptococcus_phi-m46.1-like_phage(100.0%) NA NA
DBSCAN-SWA_37 642074 : 642773 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_38 657423 : 690021 32 Streptococcus_phage(33.33%) bacteriocin,tRNA NA
DBSCAN-SWA_39 697073 : 698690 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_40 701827 : 703000 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_41 707606 : 708884 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_42 718428 : 719490 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_43 728575 : 734264 5 Staphylococcus_phage(60.0%) NA NA
DBSCAN-SWA_44 739721 : 743607 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_45 751509 : 755002 3 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_46 775154 : 776246 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_47 782735 : 802260 15 Escherichia_phage(14.29%) tRNA,protease NA
DBSCAN-SWA_48 808927 : 818610 6 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_49 824043 : 827822 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_50 830960 : 831515 1 Pneumococcus_phage(100.0%) NA NA
DBSCAN-SWA_51 835130 : 836567 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_52 865025 : 865220 1 Thermoanaerobacterium_phage(100.0%) NA NA
DBSCAN-SWA_53 870511 : 933153 55 Streptococcus_phage(27.27%) protease,integrase,transposase,holin attL 878215:878228|attR 924470:924483
DBSCAN-SWA_54 936617 : 937892 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_55 944779 : 945511 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_56 956790 : 958335 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_57 963545 : 965246 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_58 970234 : 970975 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_59 978551 : 980876 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_60 988962 : 1040020 48 Planktothrix_phage(11.11%) tRNA,bacteriocin,protease NA
DBSCAN-SWA_61 1044016 : 1046809 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_62 1053401 : 1056053 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_63 1066458 : 1069512 2 Pandoravirus(50.0%) tRNA NA
DBSCAN-SWA_64 1082519 : 1083863 1 Moumouvirus(100.0%) tRNA NA
DBSCAN-SWA_65 1087719 : 1092090 4 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_66 1097080 : 1100338 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_67 1121037 : 1122030 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_68 1143977 : 1144535 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_69 1151563 : 1153255 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_70 1159751 : 1165161 5 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_71 1170004 : 1170973 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_72 1177735 : 1178377 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_73 1183089 : 1187269 6 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_74 1190789 : 1192280 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_75 1198125 : 1199511 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_76 1204975 : 1209201 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_77 1215286 : 1220016 6 Streptococcus_phage(40.0%) protease NA
DBSCAN-SWA_78 1223700 : 1228052 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_79 1232443 : 1243207 10 Klosneuvirus(16.67%) NA NA
DBSCAN-SWA_80 1252260 : 1274955 21 Planktothrix_phage(11.11%) tRNA NA
DBSCAN-SWA_81 1280130 : 1285466 5 Cronobacter_phage(33.33%) protease NA
DBSCAN-SWA_82 1293406 : 1310835 18 Bacillus_virus(28.57%) transposase NA
DBSCAN-SWA_83 1319146 : 1327836 8 Streptococcus_virus(20.0%) NA NA
DBSCAN-SWA_84 1334234 : 1336460 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_85 1342842 : 1349745 5 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_86 1353439 : 1356541 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_87 1360266 : 1360521 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_88 1371016 : 1371775 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_89 1381830 : 1396628 16 Streptococcus_phage(63.64%) bacteriocin,protease NA
DBSCAN-SWA_90 1403308 : 1405999 2 Erwinia_phage(50.0%) transposase NA
DBSCAN-SWA_91 1410727 : 1415984 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_92 1419163 : 1430854 12 Bacillus_phage(20.0%) NA NA
DBSCAN-SWA_93 1440489 : 1446487 7 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_94 1470992 : 1485357 17 Klebsiella_phage(16.67%) NA NA
DBSCAN-SWA_95 1489905 : 1494164 3 unidentified_phage(33.33%) transposase NA
DBSCAN-SWA_96 1503101 : 1503554 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_97 1508218 : 1511122 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_98 1522745 : 1523738 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_99 1527696 : 1527927 1 Marinitoga_camini_virus(100.0%) NA NA
DBSCAN-SWA_100 1539004 : 1541877 2 Helicobacter_phage(50.0%) NA NA
DBSCAN-SWA_101 1554568 : 1563092 9 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_102 1573622 : 1582336 7 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_103 1593513 : 1597059 4 Streptococcus_phage(100.0%) integrase attL 1586982:1586998|attR 1623450:1623466
DBSCAN-SWA_104 1601544 : 1605195 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_105 1620859 : 1624769 3 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_106 1634435 : 1635089 1 Beluga_whale_alphaherpesvirus(100.0%) NA NA
DBSCAN-SWA_107 1645525 : 1649134 3 Enterococcus_phage(66.67%) NA NA
DBSCAN-SWA_108 1661054 : 1663685 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_109 1667654 : 1669761 2 Moumouvirus(50.0%) NA NA
DBSCAN-SWA_110 1675860 : 1683914 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_111 1688073 : 1688625 1 Penguinpox_virus(100.0%) NA NA
DBSCAN-SWA_112 1697425 : 1699802 2 Pithovirus(50.0%) NA NA
DBSCAN-SWA_113 1706279 : 1711691 4 Acanthamoeba_polyphaga_lentillevirus(33.33%) NA NA
DBSCAN-SWA_114 1717426 : 1784627 60 Bacillus_phage(26.67%) protease,transposase,holin NA
DBSCAN-SWA_115 1789104 : 1792579 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_116 1806793 : 1820589 11 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_117 1823707 : 1832967 10 Mycoplasma_phage(40.0%) protease NA
DBSCAN-SWA_118 1850781 : 1871589 18 Bacillus_virus(20.0%) integrase attL 1857263:1857278|attR 1876399:1876414
DBSCAN-SWA_119 1876392 : 1880426 3 Thermus_virus(50.0%) NA NA
DBSCAN-SWA_120 1883954 : 1892794 12 Streptococcus_phage(37.5%) holin NA
DBSCAN-SWA_121 1898304 : 1900172 2 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_122 1905134 : 1905977 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_123 1909300 : 1913043 2 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_124 1918424 : 1922359 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_125 1933148 : 1934156 1 Faecalibacterium_phage(100.0%) transposase NA
DBSCAN-SWA_126 1940917 : 1944016 1 Choristoneura_rosaceana_nucleopolyhedrovirus(100.0%) NA NA
DBSCAN-SWA_127 1957752 : 1961990 5 Catovirus(33.33%) tRNA NA
DBSCAN-SWA_128 1965182 : 1976637 9 Streptococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_129 1982013 : 2005401 23 Streptococcus_phage(38.46%) protease,transposase,holin NA
DBSCAN-SWA_130 2009153 : 2009987 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_131 2016870 : 2018857 2 Oenococcus_phage(50.0%) NA NA
DBSCAN-SWA_132 2026263 : 2032183 2 Yellowstone_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_133 2037076 : 2040043 2 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_134 2046939 : 2053778 4 Orpheovirus(25.0%) NA NA
DBSCAN-SWA_135 2059003 : 2059705 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_136 2064428 : 2067221 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_137 2088811 : 2090329 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_138 2104893 : 2109459 4 Acidianus_filamentous_virus(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage