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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017235 Lactobacillus delbrueckii subsp. bulgaricus strain L99 chromosome, complete genome 6 crisprs cas3,Cas14u_CAS-V,DEDDh,cas9,cas1,cas2,csn2,DinG,csa3,cas14j,c2c9_V-U4 2 27 4 0

Results visualization

1. NZ_CP017235
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017235_1 41118-41274 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017235_2 256316-256454 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017235_3 291894-291971 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017235_4 680767-680893 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017235_5 745498-748505 TypeII NA
45 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017235_6 1748069-1748171 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017235_2 2.1|256368|35|NZ_CP017235|CRISPRCasFinder 256368-256402 35 NZ_CP017235.1 256440-256474 0 1.0
NZ_CP017235_3 3.1|291918|30|NZ_CP017235|CRISPRCasFinder 291918-291947 30 NZ_CP017235.1 291864-291893 0 1.0

1. spacer 2.1|256368|35|NZ_CP017235|CRISPRCasFinder matches to position: 256440-256474, mismatch: 0, identity: 1.0

ttctgccgttagttcgacaaaatcctcctcaagcc	CRISPR spacer
ttctgccgttagttcgacaaaatcctcctcaagcc	Protospacer
***********************************

2. spacer 3.1|291918|30|NZ_CP017235|CRISPRCasFinder matches to position: 291864-291893, mismatch: 0, identity: 1.0

ggataacctccgttatgtggatttacatgt	CRISPR spacer
ggataacctccgttatgtggatttacatgt	Protospacer
******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017235_5 5.38|747977|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747977-748006 30 L02497 Bacteriophage mv4 ORF1, 3' end; minor structural protein (g20) gene, complete cds; major capsid protein (g34) gene, complete cds; ORF4-5, complete cds; ORF6, 5' end 1196-1225 0 1.0
NZ_CP017235_5 5.43|748308|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 748308-748337 30 EF455602 Lactobacillus phage LL-H, complete genome 7415-7444 0 1.0
NZ_CP017235_5 5.19|746723|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746723-746752 30 EU409559 Lactobacillus phage JCL1032, complete genome 6921-6950 1 0.967
NZ_CP017235_5 5.29|747383|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747383-747412 30 NC_001670 Lactobacillus delbrueckii plasmid pWS58, complete sequence 6408-6437 1 0.967
NZ_CP017235_5 5.43|748308|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 748308-748337 30 L02497 Bacteriophage mv4 ORF1, 3' end; minor structural protein (g20) gene, complete cds; major capsid protein (g34) gene, complete cds; ORF4-5, complete cds; ORF6, 5' end 1382-1411 3 0.9
NZ_CP017235_5 5.14|746393|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746393-746422 30 NZ_CP017303 Rhodococcus sp. YL-1 plasmid pYLL1 sequence 68150-68179 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448792 Streptococcus phage Javan521, complete genome 31449-31478 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448976 Streptococcus phage Javan528, complete genome 31382-31411 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448961 Streptococcus phage Javan494, complete genome 31376-31405 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448970 Streptococcus phage Javan516, complete genome 37446-37475 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448791 Streptococcus phage Javan517, complete genome 31297-31326 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 NC_004584 Streptococcus prophage 315.1, complete genome 31042-31071 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448945 Streptococcus phage Javan454, complete genome 31400-31429 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448949 Streptococcus phage Javan460, complete genome 33474-33503 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448770 Streptococcus phage Javan477, complete genome 31449-31478 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448978 Streptococcus phage Javan532, complete genome 30937-30966 5 0.833
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MK448785 Streptococcus phage Javan507, complete genome 30937-30966 5 0.833
NZ_CP017235_5 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745534-745563 30 NZ_CP013600 Rhizobium sp. N741 plasmid pRspN741e, complete sequence 610421-610450 6 0.8
NZ_CP017235_5 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745534-745563 30 NZ_CP013504 Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence 610422-610451 6 0.8
NZ_CP017235_5 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745534-745563 30 NZ_CP013510 Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence 608862-608891 6 0.8
NZ_CP017235_5 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745534-745563 30 NZ_CP013521 Rhizobium sp. N113 plasmid pRspN113d, complete sequence 613109-613138 6 0.8
NZ_CP017235_5 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745534-745563 30 NZ_CP013494 Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence 607228-607257 6 0.8
NZ_CP017235_5 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745534-745563 30 NZ_CP013594 Rhizobium sp. N871 plasmid pRspN871d, complete sequence 610422-610451 6 0.8
NZ_CP017235_5 5.13|746327|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746327-746356 30 NZ_CP017565 Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence 202235-202264 6 0.8
NZ_CP017235_5 5.15|746459|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746459-746488 30 NZ_CP033894 Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence 137628-137657 6 0.8
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 KU878088 Bacillus phage AR9, complete genome 219602-219631 6 0.8
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 MF360957 Bacillus virus PBS1, complete genome 129923-129952 6 0.8
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 733031-733060 6 0.8
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 733047-733076 6 0.8
NZ_CP017235_5 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746789-746818 30 NZ_CP039914 Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625c, complete sequence 15061-15090 6 0.8
NZ_CP017235_5 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746789-746818 30 NZ_CP009154 Burkholderia pseudomallei strain TSV202 plasmid 2, complete sequence 31493-31522 6 0.8
NZ_CP017235_5 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747119-747148 30 MK838113 Aeromonas phage LAh_7, complete genome 5934-5963 6 0.8
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MN035550 Leviviridae sp. isolate H1_Bulk_29_scaffold_228_e_191 RNA-dependent RNA polymerase (H1Bulk29228e191_000001), hypothetical protein (H1Bulk29228e191_000002), and hypothetical protein (H1Bulk29228e191_000003) genes, complete cds 2484-2513 6 0.8
NZ_CP017235_5 5.28|747317|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747317-747346 30 NZ_CP009275 Klebsiella variicola strain DX120E plasmid pKV1, complete sequence 123957-123986 6 0.8
NZ_CP017235_5 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745799-745828 30 NZ_CP045419 Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence 446546-446575 7 0.767
NZ_CP017235_5 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745799-745828 30 NC_011668 Shewanella baltica OS223 plasmid pS22302, complete sequence 63022-63051 7 0.767
NZ_CP017235_5 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745799-745828 30 NC_017572 Shewanella baltica BA175 plasmid pSBAL17502, complete sequence 11100-11129 7 0.767
NZ_CP017235_5 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745799-745828 30 NC_011665 Shewanella baltica OS223 plasmid pS22303, complete sequence 50257-50286 7 0.767
NZ_CP017235_5 5.7|745931|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745931-745960 30 NZ_CP030763 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence 325598-325627 7 0.767
NZ_CP017235_5 5.8|745997|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745997-746026 30 NZ_CP026230 Aeromonas sp. ASNIH1 plasmid pKPC-038c, complete sequence 4553-4582 7 0.767
NZ_CP017235_5 5.8|745997|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745997-746026 30 NZ_CP027173 Pseudomonas aeruginosa strain AR_0353 plasmid unnamed1, complete sequence 17525-17554 7 0.767
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 MN694783 Marine virus AFVG_250M759, complete genome 11981-12010 7 0.767
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 NZ_LR723678 Arsenite-oxidising bacterium NT-25 plasmid 2 40318-40347 7 0.767
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 NZ_FO082821 Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence 121539-121568 7 0.767
NZ_CP017235_5 5.19|746723|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746723-746752 30 NC_021909 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence 528602-528631 7 0.767
NZ_CP017235_5 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746789-746818 30 LN997843 Streptomyces reticuli genome assembly TUE45, plasmid : II 802155-802184 7 0.767
NZ_CP017235_5 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746789-746818 30 KU160646 Arthrobacter phage Gordon, complete genome 44002-44031 7 0.767
NZ_CP017235_5 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746789-746818 30 MF038791 Arthrobacter phage ElephantMan, complete genome 43821-43850 7 0.767
NZ_CP017235_5 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746789-746818 30 MF038790 Arthrobacter phage Niktson, complete genome 43821-43850 7 0.767
NZ_CP017235_5 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747119-747148 30 NZ_CP023408 Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence 181950-181979 7 0.767
NZ_CP017235_5 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747119-747148 30 KF986246 Mycobacterium phage MichelleMyBell, complete genome 31339-31368 7 0.767
NZ_CP017235_5 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747251-747280 30 MT939240 Enterococcus phage 9181, complete genome 15870-15899 7 0.767
NZ_CP017235_5 5.30|747449|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747449-747478 30 NZ_CP030934 Enterococcus gilvus strain CR1 plasmid pCR1B, complete sequence 72674-72703 7 0.767
NZ_CP017235_5 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747581-747610 30 NZ_CP015203 Rhodococcus sp. 008 plasmid pR8L1, complete sequence 14826-14855 7 0.767
NZ_CP017235_5 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747581-747610 30 NZ_CP011297 Rhodococcus erythropolis strain BG43 plasmid pRLLBG43, complete sequence 68201-68230 7 0.767
NZ_CP017235_5 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747581-747610 30 NZ_CP014942 Rhodococcus sp. BH4 plasmid, complete sequence 18519-18548 7 0.767
NZ_CP017235_5 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747581-747610 30 NZ_AP022334 Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence 48264-48293 7 0.767
NZ_CP017235_5 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747581-747610 30 NZ_CP044283 Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence 506606-506635 7 0.767
NZ_CP017235_5 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747581-747610 30 NZ_CP017300 Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence 15202-15231 7 0.767
NZ_CP017235_5 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747581-747610 30 NZ_CP032676 Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence 451012-451041 7 0.767
NZ_CP017235_5 5.39|748043|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 748043-748072 30 NZ_CP025584 Paracoccus jeotgali strain CBA4604 plasmid pCBA4604-01, complete sequence 34620-34649 7 0.767
NZ_CP017235_5 5.43|748308|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 748308-748337 30 MN033777 Leviviridae sp. isolate H3_Bulk_41_scaffold_1682 hypothetical protein (H3Bulk411682_000001) gene, partial cds; hypothetical protein (H3Bulk411682_000002) gene, complete cds; and RNA-dependent RNA polymerase (H3Bulk411682_000003) gene, partial cds 1942-1971 7 0.767
NZ_CP017235_5 5.4|745733|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745733-745762 30 NC_004957 Lactobacillus sp. PC121B plasmid p121BS, complete sequence 2107-2136 8 0.733
NZ_CP017235_5 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745799-745828 30 NZ_CP006570 Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence 153023-153052 8 0.733
NZ_CP017235_5 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745799-745828 30 NZ_CP011296 Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence 121540-121569 8 0.733
NZ_CP017235_5 5.8|745997|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745997-746026 30 NC_010494 Arthrobacter sp. AK-1 plasmid pSI-1, complete sequence 71897-71926 8 0.733
NZ_CP017235_5 5.15|746459|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746459-746488 30 NZ_LR699116 Aquicella lusitana strain SGT-39 plasmid 3 74914-74943 8 0.733
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 MH107028 Campylobacter phage CP39, partial genome 91626-91655 8 0.733
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 NZ_CP030933 Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence 505502-505531 8 0.733
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 CP022016 Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence 327032-327061 8 0.733
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 KX229736 Campylobacter phage PC5, complete genome 75572-75601 8 0.733
NZ_CP017235_5 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746525-746554 30 JN638751 Bacillus phage G, complete genome 296625-296654 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 MT446411 UNVERIFIED: Escherichia virus TH40, complete genome 148079-148108 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 MT446412 UNVERIFIED: Escherichia virus TH41, complete genome 36394-36423 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 MT446421 UNVERIFIED: Escherichia virus TH55, complete genome 160984-161013 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 GQ981382 Shigella phage SP18, complete genome 103031-103060 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 MT446422 UNVERIFIED: Escherichia virus TH57, complete genome 47368-47397 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 NC_028894 Enterobacteria phage vB_EcoM_VR20, complete genome 102803-102832 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 MT533174 Escherichia phage CJ20, complete genome 94788-94817 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 MT446420 UNVERIFIED: Escherichia virus TH54, complete genome 161548-161577 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 MT446396 UNVERIFIED: Escherichia virus TH22, complete genome 57649-57678 8 0.733
NZ_CP017235_5 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746657-746686 30 MT611523 Escherichia phage DK-13, complete genome 22141-22170 8 0.733
NZ_CP017235_5 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746789-746818 30 NZ_CP014676 Kozakia baliensis strain DSM 14400 plasmid pKB14400_2, complete sequence 44273-44302 8 0.733
NZ_CP017235_5 5.22|746921|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 746921-746950 30 MG945605 UNVERIFIED: Microviridae sp. isolate 4475-1711, complete genome 2624-2653 8 0.733
NZ_CP017235_5 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747119-747148 30 NZ_CP049249 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence 521178-521207 8 0.733
NZ_CP017235_5 5.33|747647|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747647-747676 30 MK613345 Roseobacter phage CRP-3, complete genome 39983-40012 8 0.733
NZ_CP017235_5 5.34|747713|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747713-747742 30 MT408532 Synechococcus phage SynMITS9220M01, complete genome 177731-177760 8 0.733
NZ_CP017235_5 5.34|747713|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747713-747742 30 NZ_CP048633 Rhizobium oryzihabitans strain M15 plasmid p1, complete sequence 111225-111254 8 0.733
NZ_CP017235_5 5.34|747713|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747713-747742 30 NZ_CP019641 Planococcus sp. Y42 plasmid unnamed1, complete sequence 129613-129642 8 0.733
NZ_CP017235_5 5.35|747779|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747779-747808 30 NZ_CP049244 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence 730353-730382 8 0.733
NZ_CP017235_5 5.39|748043|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 748043-748072 30 NZ_CP009405 Mycobacterium avium subsp. hominissuis strain OCU464 plasmid p78K, complete sequence 4803-4832 8 0.733
NZ_CP017235_5 5.40|748109|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 748109-748138 30 NZ_CP015091 Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence 157661-157690 8 0.733
NZ_CP017235_5 5.7|745931|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 745931-745960 30 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 411114-411143 9 0.7
NZ_CP017235_5 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747119-747148 30 NZ_CP027299 Streptomyces sp. SGAir0924 plasmid unnamed_5 298882-298911 9 0.7
NZ_CP017235_5 5.26|747185|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747185-747214 30 MN855797 Siphoviridae sp. isolate 94, complete genome 14350-14379 9 0.7
NZ_CP017235_5 5.35|747779|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 747779-747808 30 NZ_CP019063 Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence 256910-256939 9 0.7
NZ_CP017235_5 5.43|748308|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT 748308-748337 30 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 1499934-1499963 9 0.7

1. spacer 5.38|747977|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to L02497 (Bacteriophage mv4 ORF1, 3' end; minor structural protein (g20) gene, complete cds; major capsid protein (g34) gene, complete cds; ORF4-5, complete cds; ORF6, 5' end) position: , mismatch: 0, identity: 1.0

gtcacactatttcagttgacaaggaaaccg	CRISPR spacer
gtcacactatttcagttgacaaggaaaccg	Protospacer
******************************

2. spacer 5.43|748308|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to EF455602 (Lactobacillus phage LL-H, complete genome) position: , mismatch: 0, identity: 1.0

cagctgccaagaaggccaccgactcaatca	CRISPR spacer
cagctgccaagaaggccaccgactcaatca	Protospacer
******************************

3. spacer 5.19|746723|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to EU409559 (Lactobacillus phage JCL1032, complete genome) position: , mismatch: 1, identity: 0.967

acgggtcatcaaaacttgtgcgttgtcttg	CRISPR spacer
acgggtcatcaaaacttgtgcgttatcttg	Protospacer
************************.*****

4. spacer 5.29|747383|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_001670 (Lactobacillus delbrueckii plasmid pWS58, complete sequence) position: , mismatch: 1, identity: 0.967

ctaagctccgatgtatcgtccgtcctttga	CRISPR spacer
ctaagctccgatgtatcgtccgccctttga	Protospacer
**********************.*******

5. spacer 5.43|748308|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to L02497 (Bacteriophage mv4 ORF1, 3' end; minor structural protein (g20) gene, complete cds; major capsid protein (g34) gene, complete cds; ORF4-5, complete cds; ORF6, 5' end) position: , mismatch: 3, identity: 0.9

cagctgccaagaaggccaccgactcaatca	CRISPR spacer
cagcagcaaagaaggccaccgactcaatta	Protospacer
**** ** ********************.*

6. spacer 5.14|746393|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017303 (Rhodococcus sp. YL-1 plasmid pYLL1 sequence) position: , mismatch: 5, identity: 0.833

aggatccgcgctttaccgtgctttgtgtaa-	CRISPR spacer
aggatccgcgctttaccg-gccttgtcgacc	Protospacer
****************** **.****  *  

7. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448792 (Streptococcus phage Javan521, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

8. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448976 (Streptococcus phage Javan528, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

9. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

10. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

11. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

12. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_004584 (Streptococcus prophage 315.1, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

13. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

14. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

15. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448770 (Streptococcus phage Javan477, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

16. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448978 (Streptococcus phage Javan532, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

17. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK448785 (Streptococcus phage Javan507, complete genome) position: , mismatch: 5, identity: 0.833

ccatttttgcttgggttggtgacaa-gctat	CRISPR spacer
ccatttttgctttggttggtgtcagtacta-	Protospacer
************ ******** **. .*** 

18. spacer 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 6, identity: 0.8

gagcgctctgcgagtatgaggttgtccatc	CRISPR spacer
gcgcgctcggcgagcatgaggttgtgccgc	Protospacer
* ****** *****.********** *  *

19. spacer 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 6, identity: 0.8

gagcgctctgcgagtatgaggttgtccatc	CRISPR spacer
gcgcgctcggcgagcatgaggttgtgccgc	Protospacer
* ****** *****.********** *  *

20. spacer 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 6, identity: 0.8

gagcgctctgcgagtatgaggttgtccatc	CRISPR spacer
gcgcgctcggcgagcatgaggttgtgccgc	Protospacer
* ****** *****.********** *  *

21. spacer 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 6, identity: 0.8

gagcgctctgcgagtatgaggttgtccatc	CRISPR spacer
gcgcgctcggcgagcatgaggttgtgccgc	Protospacer
* ****** *****.********** *  *

22. spacer 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 6, identity: 0.8

gagcgctctgcgagtatgaggttgtccatc	CRISPR spacer
gcgcgctcggcgagcatgaggttgtgccgc	Protospacer
* ****** *****.********** *  *

23. spacer 5.1|745534|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 6, identity: 0.8

gagcgctctgcgagtatgaggttgtccatc	CRISPR spacer
gcgcgctcggcgagcatgaggttgtgccgc	Protospacer
* ****** *****.********** *  *

24. spacer 5.13|746327|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017565 (Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence) position: , mismatch: 6, identity: 0.8

cactacgactactgctaactcaaacgctga	CRISPR spacer
agctacggctactgttaactcaaacgcaaa	Protospacer
 .*****.******.************ .*

25. spacer 5.15|746459|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 6, identity: 0.8

aataactgtgtgattttaatcggaagactg	CRISPR spacer
aataactatgtgattctaatcggagatccg	Protospacer
*******.*******.********.. *.*

26. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to KU878088 (Bacillus phage AR9, complete genome) position: , mismatch: 6, identity: 0.8

acctgcttgatttaaattatcagatatttc	CRISPR spacer
ataaacttgatttaaattaacaaatatttc	Protospacer
*.  .************** **.*******

27. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MF360957 (Bacillus virus PBS1, complete genome) position: , mismatch: 6, identity: 0.8

acctgcttgatttaaattatcagatatttc	CRISPR spacer
ataaacttgatttaaattaacaaatatttc	Protospacer
*.  .************** **.*******

28. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 6, identity: 0.8

acctgcttgatttaaattatcagatatttc	CRISPR spacer
agcatcttgaattacattatcagatattcc	Protospacer
* *  ***** *** *************.*

29. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 6, identity: 0.8

acctgcttgatttaaattatcagatatttc	CRISPR spacer
agcatcttgaattacattatcagatattcc	Protospacer
* *  ***** *** *************.*

30. spacer 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039914 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625c, complete sequence) position: , mismatch: 6, identity: 0.8

ttgctaa--ctcgtcttcttcgaagtcgtcaa	CRISPR spacer
--gctggttctcgtcttcctcgatgtcgtcaa	Protospacer
  ***..  *********.**** ********

31. spacer 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009154 (Burkholderia pseudomallei strain TSV202 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.8

ttgctaa--ctcgtcttcttcgaagtcgtcaa	CRISPR spacer
--gctggttctcgtcttcctcgatgtcgtcaa	Protospacer
  ***..  *********.**** ********

32. spacer 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK838113 (Aeromonas phage LAh_7, complete genome) position: , mismatch: 6, identity: 0.8

taccaggtcggcgtggtagtcggtcaagta	CRISPR spacer
ctccaggtcggcgcggtagtcggtcatgat	Protospacer
. ***********.************ *  

33. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MN035550 (Leviviridae sp. isolate H1_Bulk_29_scaffold_228_e_191 RNA-dependent RNA polymerase (H1Bulk29228e191_000001), hypothetical protein (H1Bulk29228e191_000002), and hypothetical protein (H1Bulk29228e191_000003) genes, complete cds) position: , mismatch: 6, identity: 0.8

ccatttttgcttgggttggtgacaagctat	CRISPR spacer
ctatggcggcttgggttggtgacaagccat	Protospacer
*.**  . *******************.**

34. spacer 5.28|747317|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009275 (Klebsiella variicola strain DX120E plasmid pKV1, complete sequence) position: , mismatch: 6, identity: 0.8

gcggtcactacgagcagtgcagcaacatca	CRISPR spacer
gcggtcactacgagcagtacatccagaata	Protospacer
******************.** * * * .*

35. spacer 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 7, identity: 0.767

cttcggcttgcttttcgccaccagtgacca	CRISPR spacer
tatcggcttgcttttcgccatcagaagtca	Protospacer
. ******************.*** ...**

36. spacer 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_011668 (Shewanella baltica OS223 plasmid pS22302, complete sequence) position: , mismatch: 7, identity: 0.767

cttcggcttgcttttcgccaccagtgacca	CRISPR spacer
cttcggcttgcttttcgacactggcaatcg	Protospacer
***************** ***..*..*.*.

37. spacer 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_017572 (Shewanella baltica BA175 plasmid pSBAL17502, complete sequence) position: , mismatch: 7, identity: 0.767

cttcggcttgcttttcgccaccagtgacca	CRISPR spacer
cttcggcttgcttttcgacactggcaatcg	Protospacer
***************** ***..*..*.*.

38. spacer 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_011665 (Shewanella baltica OS223 plasmid pS22303, complete sequence) position: , mismatch: 7, identity: 0.767

cttcggcttgcttttcgccaccagtgacca	CRISPR spacer
cttcggcttgcttttcgacactggcaatcg	Protospacer
***************** ***..*..*.*.

39. spacer 5.7|745931|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ccgttgcctacttcagccgcaacgcctgga	CRISPR spacer
tcgttgccttcttcagccgcaatcccggcc	Protospacer
.******** ************. ** *  

40. spacer 5.8|745997|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026230 (Aeromonas sp. ASNIH1 plasmid pKPC-038c, complete sequence) position: , mismatch: 7, identity: 0.767

tccaaatttttccggccagcgtccgagggc	CRISPR spacer
gcttgatctttccggccagcgtccgagcga	Protospacer
 *. .**.******************* * 

41. spacer 5.8|745997|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027173 (Pseudomonas aeruginosa strain AR_0353 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tccaaatttttccggccagcgtccgagggc	CRISPR spacer
gcttgatctttccggccagcgtccgagcga	Protospacer
 *. .**.******************* * 

42. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MN694783 (Marine virus AFVG_250M759, complete genome) position: , mismatch: 7, identity: 0.767

---acctgcttgatttaaattatcagatatttc	CRISPR spacer
caaatatg---aatttacattatcagatatttc	Protospacer
   *. **   .***** ***************

43. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723678 (Arsenite-oxidising bacterium NT-25 plasmid 2) position: , mismatch: 7, identity: 0.767

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
cctacaacttcaatagcgatgctgtaacga	Protospacer
. * .* ********.************ *

44. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_FO082821 (Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence) position: , mismatch: 7, identity: 0.767

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
cctacaacttcaatagcgatgctgtaacga	Protospacer
. * .* ********.************ *

45. spacer 5.19|746723|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 7, identity: 0.767

acgggtcatcaaaacttgtgcgttgtcttg	CRISPR spacer
acttcaggtcaaaacttgttcgttgtcttg	Protospacer
**     .*********** **********

46. spacer 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 7, identity: 0.767

ttgctaactcgtcttcttcgaagtcgtcaa	CRISPR spacer
agaagaactcgtcttcctcgaagtcggcaa	Protospacer
  .  ***********.********* ***

47. spacer 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to KU160646 (Arthrobacter phage Gordon, complete genome) position: , mismatch: 7, identity: 0.767

ttgctaactcgtcttcttcgaagtcgtcaa	CRISPR spacer
ggaagaactcgtttccttcgaagtcgtcaa	Protospacer
  .  *******.*.***************

48. spacer 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MF038791 (Arthrobacter phage ElephantMan, complete genome) position: , mismatch: 7, identity: 0.767

ttgctaactcgtcttcttcgaagtcgtcaa	CRISPR spacer
ggaagaactcgtctccttcgaaatcgtcaa	Protospacer
  .  *********.*******.*******

49. spacer 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MF038790 (Arthrobacter phage Niktson, complete genome) position: , mismatch: 7, identity: 0.767

ttgctaactcgtcttcttcgaagtcgtcaa	CRISPR spacer
ggaagaactcgtctccttcgaaatcgtcaa	Protospacer
  .  *********.*******.*******

50. spacer 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

taccaggtcggcgtggtagtcggtcaagta	CRISPR spacer
ttccaggtcggcgtgctcgtcggtctgcca	Protospacer
* ************* * ******* . .*

51. spacer 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to KF986246 (Mycobacterium phage MichelleMyBell, complete genome) position: , mismatch: 7, identity: 0.767

taccaggtcggcgtggtagtcggtcaagta	CRISPR spacer
gccccggtcggcgtggtagtcggcctcgtc	Protospacer
  ** ******************.*  ** 

52. spacer 5.27|747251|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT939240 (Enterococcus phage 9181, complete genome) position: , mismatch: 7, identity: 0.767

ccatttttgcttgggttggtgacaagctat	CRISPR spacer
ctaaagatacttgggttggttacaagctat	Protospacer
*.*    *.*********** *********

53. spacer 5.30|747449|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030934 (Enterococcus gilvus strain CR1 plasmid pCR1B, complete sequence) position: , mismatch: 7, identity: 0.767

actgggctaaagcttcggacagcaatttct	CRISPR spacer
gcatggttaaagcttcggacaacaattctt	Protospacer
.*  **.**************.*****..*

54. spacer 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015203 (Rhodococcus sp. 008 plasmid pR8L1, complete sequence) position: , mismatch: 7, identity: 0.767

gtggatcgtctcgtcctcgtccgccttagt	CRISPR spacer
gtggatggcctcgtcctcgtccgcgacacg	Protospacer
****** *.***************  .*  

55. spacer 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011297 (Rhodococcus erythropolis strain BG43 plasmid pRLLBG43, complete sequence) position: , mismatch: 7, identity: 0.767

gtggatcgtctcgtcctcgtccgccttagt	CRISPR spacer
gtggatggcctcgtcctcgtccgcgacacg	Protospacer
****** *.***************  .*  

56. spacer 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

gtggatcgtctcgtcctcgtccgccttagt	CRISPR spacer
gtggatggcctcgtcctcgtccgcgacacg	Protospacer
****** *.***************  .*  

57. spacer 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022334 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence) position: , mismatch: 7, identity: 0.767

gtggatcgtctcgtcctcgtccgccttagt	CRISPR spacer
gccgatcgcctcgtcctcgtccgccccatc	Protospacer
*. *****.****************..* .

58. spacer 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044283 (Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence) position: , mismatch: 7, identity: 0.767

gtggatcgtctcgtcctcgtccgccttagt	CRISPR spacer
gtggatggcctcgtcctcgtccgcgacacg	Protospacer
****** *.***************  .*  

59. spacer 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017300 (Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence) position: , mismatch: 7, identity: 0.767

gtggatcgtctcgtcctcgtccgccttagt	CRISPR spacer
gtggatggcctcgtcctcgtccgcgacacg	Protospacer
****** *.***************  .*  

60. spacer 5.32|747581|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 7, identity: 0.767

gtggatcgtctcgtcctcgtccgccttagt	CRISPR spacer
tcggatcgcctcgtcctcgtccgcgaaggt	Protospacer
 .******.***************   .**

61. spacer 5.39|748043|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025584 (Paracoccus jeotgali strain CBA4604 plasmid pCBA4604-01, complete sequence) position: , mismatch: 7, identity: 0.767

cagcacctcaagacactgaagaaatgcacc	CRISPR spacer
catcacctcaagacactgaagctgccgacc	Protospacer
** ******************  ..  ***

62. spacer 5.43|748308|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MN033777 (Leviviridae sp. isolate H3_Bulk_41_scaffold_1682 hypothetical protein (H3Bulk411682_000001) gene, partial cds; hypothetical protein (H3Bulk411682_000002) gene, complete cds; and RNA-dependent RNA polymerase (H3Bulk411682_000003) gene, partial cds) position: , mismatch: 7, identity: 0.767

cagctgccaagaaggccaccgactcaatca	CRISPR spacer
tggccacaaagaaggccatcgactcaatcg	Protospacer
..**..* **********.**********.

63. spacer 5.4|745733|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_004957 (Lactobacillus sp. PC121B plasmid p121BS, complete sequence) position: , mismatch: 8, identity: 0.733

catctgaggattggtttgacgtggctgcga	CRISPR spacer
attctgatgattggtttgacgtagcgatta	Protospacer
  ***** **************.** .. *

64. spacer 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006570 (Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence) position: , mismatch: 8, identity: 0.733

cttcggcttgcttttcgccaccagtgacca	CRISPR spacer
taccggcttgcttttcgccgccagcgcctg	Protospacer
. .****************.****.* *..

65. spacer 5.5|745799|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011296 (Rhodococcus erythropolis strain BG43 plasmid pRLCBG43, complete sequence) position: , mismatch: 8, identity: 0.733

cttcggcttgcttttcgccaccagtgacca	CRISPR spacer
tcatagcttgcttttcgcaaccggtgacga	Protospacer
.. ..************* ***.***** *

66. spacer 5.8|745997|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_010494 (Arthrobacter sp. AK-1 plasmid pSI-1, complete sequence) position: , mismatch: 8, identity: 0.733

tccaaatttttccggccagcgtccgagggc	CRISPR spacer
accaagttgttccggccagcgtcccctctc	Protospacer
 ****.** ***************     *

67. spacer 5.15|746459|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699116 (Aquicella lusitana strain SGT-39 plasmid 3) position: , mismatch: 8, identity: 0.733

aataactgtgtgattttaatcggaagactg	CRISPR spacer
tgtttaggtgcgattttaatcggacgactg	Protospacer
 .*    ***.************* *****

68. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MH107028 (Campylobacter phage CP39, partial genome) position: , mismatch: 8, identity: 0.733

acctgcttgatttaaattatcagatatttc	CRISPR spacer
gaatgcttcttttaaattatcagatagtat	Protospacer
.  *****  **************** * .

69. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 8, identity: 0.733

acctgcttgatttaaattatcagatatttc	CRISPR spacer
aaacgctggatttaaattaacagatatcga	Protospacer
*  .*** *********** *******.  

70. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

acctgcttgatttaaattatcagatatttc	CRISPR spacer
acctgctagatttagattatcaggtgccca	Protospacer
******* ******.********.*.... 

71. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 8, identity: 0.733

acctgcttgatttaaattatcagatatttc	CRISPR spacer
gaatgcttcttttaaattatcagatagtat	Protospacer
.  *****  **************** * .

72. spacer 5.16|746525|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.733

acctgcttgatttaaattatcagatatttc	CRISPR spacer
agggattttatttaaattatctgatatttt	Protospacer
*   ..** ************ *******.

73. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT446411 (UNVERIFIED: Escherichia virus TH40, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

74. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT446412 (UNVERIFIED: Escherichia virus TH41, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

75. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT446421 (UNVERIFIED: Escherichia virus TH55, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

76. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to GQ981382 (Shigella phage SP18, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

77. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT446422 (UNVERIFIED: Escherichia virus TH57, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

78. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NC_028894 (Enterobacteria phage vB_EcoM_VR20, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

79. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT533174 (Escherichia phage CJ20, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

80. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT446420 (UNVERIFIED: Escherichia virus TH54, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

81. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT446396 (UNVERIFIED: Escherichia virus TH22, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

82. spacer 5.18|746657|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT611523 (Escherichia phage DK-13, complete genome) position: , mismatch: 8, identity: 0.733

tgtttaccttcaataacgatgctgtaacta	CRISPR spacer
ttaaaaccttcattaacgatgctataacct	Protospacer
*    ******* **********.****. 

83. spacer 5.20|746789|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014676 (Kozakia baliensis strain DSM 14400 plasmid pKB14400_2, complete sequence) position: , mismatch: 8, identity: 0.733

ttgctaactcgtcttcttcgaagtcgtcaa	CRISPR spacer
acgttaagtcgtcttctttgaagtcgtatc	Protospacer
 .*.*** **********.********   

84. spacer 5.22|746921|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MG945605 (UNVERIFIED: Microviridae sp. isolate 4475-1711, complete genome) position: , mismatch: 8, identity: 0.733

aattgcatcgcctgtagcctttgcattagc	CRISPR spacer
gattgcatcgcctgttgcctttaccatgtg	Protospacer
.************** ******.*  *.  

85. spacer 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

taccaggtcggcgtggtagtcggtcaagta	CRISPR spacer
ggatcgttcgtcgtggtagtcggccaagta	Protospacer
 . . * *** ************.******

86. spacer 5.33|747647|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MK613345 (Roseobacter phage CRP-3, complete genome) position: , mismatch: 8, identity: 0.733

acagctcgcacttaatgatttcgtctctgt	CRISPR spacer
attctgcgcccttaatgacttcgtctctga	Protospacer
*.  . *** ********.********** 

87. spacer 5.34|747713|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MT408532 (Synechococcus phage SynMITS9220M01, complete genome) position: , mismatch: 8, identity: 0.733

aatgatgactgcttgactgattctctcttc	CRISPR spacer
gatgatgacggcttgcctgattctccagga	Protospacer
.******** ***** *********.    

88. spacer 5.34|747713|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048633 (Rhizobium oryzihabitans strain M15 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

aatgatgactgcttgactgattctctcttc	CRISPR spacer
attgatgactgctcgactgattctacaaga	Protospacer
* ***********.********** .    

89. spacer 5.34|747713|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019641 (Planococcus sp. Y42 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aatgatgactgcttgactgattctctcttc	CRISPR spacer
ttttcatactgcttgattgattctctcatc	Protospacer
  *    *********.********** **

90. spacer 5.35|747779|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

ttccggcatcagttttgccgcaagacctta	CRISPR spacer
ttccggcatcagtttggctgcaatggcccg	Protospacer
*************** **.**** . *...

91. spacer 5.39|748043|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009405 (Mycobacterium avium subsp. hominissuis strain OCU464 plasmid p78K, complete sequence) position: , mismatch: 8, identity: 0.733

cagcacctcaagacactgaagaaatgcacc	CRISPR spacer
caccacctcaagacactgaaggcactgggc	Protospacer
** ******************. *.  . *

92. spacer 5.40|748109|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaaatatcggatcacccccacggaagtga	CRISPR spacer
tcaccggtcggatcaccaccaaggaagtga	Protospacer
  *   .********** *** ********

93. spacer 5.7|745931|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 9, identity: 0.7

ccgttgcctacttcagccgcaacgcctgga	CRISPR spacer
agaacgcctacttcggccgcaacgccttcg	Protospacer
  . .*********.************  .

94. spacer 5.25|747119|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 9, identity: 0.7

taccaggtcggcgtggtagtcggtcaagta	CRISPR spacer
ggacaggtcggcgtggaagacggtcagacc	Protospacer
 . ************* ** ******... 

95. spacer 5.26|747185|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to MN855797 (Siphoviridae sp. isolate 94, complete genome) position: , mismatch: 9, identity: 0.7

tctctgcgcaagcggttaacgtcttcacca	CRISPR spacer
gcaatgcggaagcggttaacgtctttgttt	Protospacer
 *  **** ****************.... 

96. spacer 5.35|747779|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019063 (Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ttccggcatcagttttgccgcaagacctta	CRISPR spacer
ggggagcatcagttttgccgccagatctcc	Protospacer
    .**************** ***.**. 

97. spacer 5.43|748308|30|NZ_CP017235|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.7

cagctgccaagaaggccaccgactcaatca	CRISPR spacer
tggcggccaaggaggccaccgactcctatg	Protospacer
..** ******.*************   ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 934373 : 1015211 57 Streptococcus_phage(27.78%) transposase,protease,integrase,tRNA attL 930153:930171|attR 1027461:1027479
DBSCAN-SWA_2 1022191 : 1091164 55 Streptococcus_phage(18.75%) transposase,protease,integrase,tRNA attL 1024366:1024425|attR 1049556:1049634
DBSCAN-SWA_3 1238146 : 1246718 8 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1676745 : 1682516 6 Streptomyces_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage