CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022588	Mycoplasma bovis strain MJ4 chromosome, complete genome	3 crisprs	NA	3	0	7	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022588_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022588_1

262912-262994

Orphan

Consensus_repeat	Method
TCTGTACGAGATGTGCTTGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022588_1

>merge|NZ_CP022588|1|262912-262994|CRISPRCasFinder
TCTGTACGAGATGTGCTTGAAGAGCTTGATGAATCAGACGAATCGCTTTGAGTTCCAGATTCTGTACGAGATGTGTTTGAAGA

>NZ_CP022588|1|1|262912-262994|CRISPRCasFinder
TCTGTACGAGATGTGCTTGAAGA	GCTTGATGAATCAGACGAATCGCTTTGAGTTCCAGAT
TCTGTACGAGATGTGTTTGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022588.1\|WP_013954635.1\|256825_257800_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP022588.1\|WP_013954633.1\|253333_254263_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP022588.1\|WP_013456076.1\|259967_260297_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_013456603.1\|270367_270637_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP022588.1\|WP_101456669.1\|273620_275006_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_013455927.1\|263993_265010_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP022588.1\|WP_101456667.1\|270750_271338_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_101456664.1\|266682_267627_-\|endonuclease	unknown	unknown	gnl\|CDD\|367881
NZ_CP022588.1\|WP_115305927.1\|271431_273609_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_013954631.1\|248676_250593_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|223265
NZ_CP022588.1\|WP_075271093.1\|254264_254981_+\|ribonuclease-HIII	unknown	unknown	gnl\|CDD\|260000
NZ_CP022588.1\|WP_101456745.1\|275005_275341_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP022588.1\|WP_080551570.1\|258400_259429_+\|IS30-like-element-ISMbov1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP022588.1\|WP_101456662.1\|247165_248563_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP022588.1\|WP_101456663.1\|260540_261236_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_CP022588.1\|WP_013954632.1\|250606_253192_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP022588.1\|WP_115305924.1\|267725_269672_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP022588.1\|WP_115306037.1\|265173_266001_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP022588.1\|WP_101456666.1\|269734_270289_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179388
NZ_CP022588.1\|WP_014829885.1\|261219_262206_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929

Protein	Function_ID	Function_description	E-value
NZ_CP022588.1\|WP_013954635.1\|256825_257800_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.47396e-81
NZ_CP022588.1\|WP_013954633.1\|253333_254263_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.19348e-56
NZ_CP022588.1\|WP_013456603.1\|270367_270637_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	3.77072e-16
NZ_CP022588.1\|WP_013455927.1\|263993_265010_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.28197e-69
NZ_CP022588.1\|WP_101456664.1\|266682_267627_-\|endonuclease	gnl\|CDD\|367881	pfam04231, Endonuclease_1, Endonuclease I. Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor.	8.97394e-51
NZ_CP022588.1\|WP_013954631.1\|248676_250593_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|223265	COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair].	0
NZ_CP022588.1\|WP_075271093.1\|254264_254981_+\|ribonuclease-HIII	gnl\|CDD\|260000	cd06590, RNase_HII_bacteria_HIII_like, Bacterial type 2 ribonuclease, HII and HIII-like. This family includes type 2 RNases H from several bacteria, such as Bacillus subtilis, which have two different RNases, HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes; however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gene inheritance might be the result of functional redundancy of RNase HI and HIII in prokaryotes. Ribonuclease (RNase) H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, archaeal RNase HII and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication or repair.	1.12092e-73
NZ_CP022588.1\|WP_101456745.1\|275005_275341_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	9.64963e-32
NZ_CP022588.1\|WP_080551570.1\|258400_259429_+\|IS30-like-element-ISMbov1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	9.23257e-27
NZ_CP022588.1\|WP_101456662.1\|247165_248563_+\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	5.90192e-07
NZ_CP022588.1\|WP_101456663.1\|260540_261236_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	1.98422e-40
NZ_CP022588.1\|WP_013954632.1\|250606_253192_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP022588.1\|WP_115305924.1\|267725_269672_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP022588.1\|WP_014829885.1\|261219_262206_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.84424e-164
NZ_CP022588.1\|WP_101456666.1\|269734_270289_-\|inorganic-diphosphatase	gnl\|CDD\|179388	PRK02230, PRK02230, inorganic pyrophosphatase; Provisional.	3.38042e-119
NZ_CP022588.1\|WP_115306037.1\|265173_266001_-\|hypothetical-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	1.37814e-08

>NZ_CP022588.1|WP_014829885.1|261219_262206_-|ribose-phosphate-pyrophosphokinase
MNNNNALLFGMPNCIKLAERISKMINIPLSTLTLTKFADGETMPVSDEAVRGKDVYIIASTSRPVNDNLMILYLFIDSLKRASAKSINIALAYYGYARQDRKASGRQPIGAKLVADFLETAGASKIITVDLHNSAIQGFFNIPIDDLKASFTLAKAIKRSHEKFTVVSPDHGGTVRARSLAELISNDIKISIIDKRRTGINQTEVMGLIGDVKDQNAVIIDDIIDTGGTIIKAAETLKQYGAKKIVIAATHGIFSKGFDIFENNPAVEKVIITDSIDNDELLDKYKKLEIVSLDRFLGSVIDCSINGKSISMLYDKFAKEIKENESHK
>NZ_CP022588.1|WP_101456663.1|260540_261236_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNHINKEYLLNKYSKQIPLLYRYAQMIYEKNKVMNICGFDSVDEIFNQGILGSILVFENAMNEYNHDFVNKKILDIGAGAGFPSVPLLIALDNKFELVIMESITKRCTFLESVKNEFNLNLTIINARAEEINDYNSYFDYICARAVGSVIKIYLMANHHLAQNGYFILPKGKNYHAEIDEFKNKFTLEKDNISSFEYEDSINNENSSLVLIKKTKPTPRGWPWKWAKIKNY
>NZ_CP022588.1|WP_013456076.1|259967_260297_+|hypothetical-protein
MSRTKKLSISYLITYPIAFIVTVVLLVLYGRQLLDFAQQKEGFTGNLALWTVYLLYAVVIVVPFIMLIINILLIFFNVGTIARILLIVGLFVPWCSFVGALIALIRPGK
>NZ_CP022588.1|WP_080551570.1|258400_259429_+|IS30-like-element-ISMbov1-family-transposase
MKTVSNIVGFKSRSIYNLFDRITIETKRGYAKYQKKCKLCGMDLKGKTIYVISALKFLNLIETRHDSKRLENNSKLLMKYIEIFKFYKQLLYFYLKNRNSFNLDSKAVKQSVASIIFKYIRELEAQGKLQNSYIPSVQNFYRILAKHSAFGLKLDILPYKSNGKYGSRTTVKHETKKKTIGKLITERPESVNLRLNDNDYEMDTVIGLRSDNYCILTLINRKSRMFYCTLSRRNAKAIKENLEKLIKDNNLVIDTLTIDNGSENYKLPEIESIKEIFHCHPYSSSEKGSIENAHRLLRRYIPKGKSIDKYVGQDLKPIADFINSHPRIYKGVSGFKCAKQMQ
>NZ_CP022588.1|WP_013954635.1|256825_257800_+|DNA-cytosine-methyltransferase
MGKRGIIDLFAGAGGLTLGFTQNNFDILDTIEFWQPAVDTYNFNFKKNVVAKDITDSEVRNELESNWKNKTDLVIGGFPCQGFSLAGRRSKDDERNQLYKYTIDVISRLQPYGFVLENVKGILSFRESDNELVVDKIQKMLAKENYYTKFILLDSSNFGVPQKRERVIFIGCKDKEKVDKVISLLSKHKEKIVTVFDAIGHLEKVTDDKEIPNHIFSKHSEEIKERFMKLKEGESLSKSFSDAFRKLSYDKPSPTVKENHGGVHVHPVLPRVLTPRELANLQSFPEDFIFLGTKSNVLKQIGNAVPVKLSYEIAKIVNKVFFNE
>NZ_CP022588.1|WP_075271093.1|254264_254981_+|ribonuclease-HIII
MQFLDLDVESSLLENKSIIGVDEVGVGDYFGPLCACAVFIDAQNVNKVAELGIKDSKKLSDKRIKELALKLKNSGLIHYSLAHLNPSGYNKLNKSYNANILKMFVHLKAINSVVFKLKNIKYDYIFIDKYASVDNMLKYYNELVINNNWANFQEINEDILIANKAESYSISVAAASILARDQFLTLVSKMNDEYNTVFPLGAGPKVNAFAKDFFAKHSYDEEVIKKTCKKSFKMNILN
>NZ_CP022588.1|WP_013954633.1|253333_254263_+|Cof-type-HAD-IIB-family-hydrolase
MSTLTNNKKEKFLFAIDLDGTLLSSSRENIVPENCIKAIQRAKDEGHVVCIFTGRPWRSTKPIYDMLGLNTVVSNYNGAQIHNPKDDNFIPHIKYLNLNEMLYILGDQKVKKEISNLAIEGPGWVQLEHRDDDIEAVFGFSSAEKFTVGINLNKVPLSPTGIVFDVKETTDAEELRRYLRARYGDLGEFSYWSKGEGLTPVFDITNVTVNKGRALSLLSRYYGVDLDHTIAFGDGFNDVPMFKVATVSVVLGNAADLVKRHATVRLKKTNKEGGVGDYINKFLDNPEKEIAKSKAMALKMRKVSIQEEE
>NZ_CP022588.1|WP_013954632.1|250606_253192_+|DNA-topoisomerase-IV-subunit-A
MNKKKEQQLNDLLSKIVRENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQHNKPFKKSARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEARLSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHNLNEILDAAIAKIKNPAIELSKLAKIIQGPDFPTGGVIYGTDGIYEAFERGKGRITLASRYNVYSDNKYKYIEITEIPYGVIKSKLVHEIDLIVDSEEVAGLIEVKDQTDRNGINILITLDKNVNENVIVNYLFLKTQMRIYYNYNNVVIDNHTPKTMGISALLDAYLKHVKDVKVKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSEDSKQGVIDNLMSAFDFTLNQATAIAELRLYKLSKTDEHTFMFEKQELEEKIKQCELLLTNPDEFNNYLVSLFRDLKHKFGRIRRTSIEIEQINSSVNQEDLVKEEEVFLGISKFGYIKKVSKKTYESNLITTYGIKEDDNILFYDIASSLDKLLLFTNLGNYAYLPVFKVNESKWKEFGIHLSDFVDLSSGEEIVSVIKVSDFDVTNYVCMFTKKGQGKKVLLKDFDVSRFSKTFVAMKLKNDDELISAKLSNGLKDVLLITKNNFASLYSENDVPIYGLKSNGNKACYLANGDELVSFTVVKPNDSVALVSQSNKVRLINVSEISRVSKQNKGVSIFSKGRLNNAIVQCDPLLDETKLLLVNNQGQAHFEKIQNYVKQASTKFINFDADDIRTISLISNYSSTTNDNEFHSYEKESSDENQLMNKAIETKNSIDLSIDEILSKVDELLKKDKK
>NZ_CP022588.1|WP_013954631.1|248676_250593_+|DNA-topoisomerase-IV-subunit-B
MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGEANEIAVILKNDGSVVVSDNGRGIPVGKTPSGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSVVNALSNKLKCLVYRDKHVYETIFENGDNIVQKTHIIGSTNKRGTLIQFWPNYEIFKKAKFNFETIAERLRESSFLISNLSIKLLDEQSGKSEEFKYSNGIKAFVEFINDSKTALFNVYSFKTVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKFLEFVSQTKDKLGTPEAKSAVEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKERQILSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDILKNEEINTIINAIGAGIGVDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIEEGKVYIALPPLFKLSINKGQKKILYAWDEDELKELLQSKMKGAEVQRYKGLGEMNADQLWETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVDSRKEWINKNVNFTMEDDFEI
>NZ_CP022588.1|WP_101456662.1|247165_248563_+|CvpA-family-protein
MKIIESLENIAFNSWSILIPIILVIFIVILAIVSGLRRGIYGGLIILLFGLSGWIIGIFAAKPLVDVIVIKTKITLPGNKQIDAEILRKMFYGIAMFVIQILFLIVGEIISLLLRKWIKKPLKNMRENKVSSVGSRSLGAVLSTAGIVPCAILTANVTGFLTTNNKVIDANDKMLNYISFKKAEGVSKYTPGLIASAKIGNDLLNASSGSKLDETVIGAFEWYLQQFANPDNYVLLSVSKDGQAKPIISTNALKNINRKEEQEKVLQGLIPFILGDSSVKKNGITLFFNFNTSSAGAFKYDSNSGKIEINTDNSENTQLKVKNIGKISNIFQLYTATPESFRILEYLSKLGLKEAKASEGFDEIYSLVDQTEPVWDILNAAQLKFNMNPSYRIKVYDREYVKRMKDILFDLFEKNTGGKFKYDRKELNEEKMKSWVTIQTIHQKIYWIVSSVIDNVFITPENVSN
>NZ_CP022588.1|WP_013455927.1|263993_265010_-|IS30-family-transposase
MNYTKNYNHLTYDERAFIEIQIKSGYSIRSIARQLNRSPSTVSRELKRNTAFSGSYQCKIAEQKALNRHSHKYLFKFTSNFEYAEFEKFFLEKFDKRFYGIVATARYIKQTFPNIASPSIRTIFNWIKTRKWKLKPRDRLRIFYKKGGKRTASVVSRLIGDSHYVYPIWARPKYIDLREEYGHWESDLIIGKRSNGYDNVLTLVERQTRMGFAVKIKSKSAFLVISKLKKIIQDHNLIVKSITIDNGIEFERMGLLGKWLNIKIFRAEPYASFQRGTNENWNGMIRRMFHKGFDFNSISQVQLDDVVNQINEMPRKILNWQKPIELFKLANDYGVVLN
>NZ_CP022588.1|WP_115306037.1|265173_266001_-|hypothetical-protein
MPNKVVITGFKDSLINENIIIKPEPIPPINHEKPIMKDTETNTNDESSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSEPEKANSELSNERKIKEKGYRLNELTAYPYDLIDVDDDANKDELAKKLNDVITHKNGAIAIVGGSFFSKCNNLQLTGLSINKSIKSETKSQISTHNKLIGFFEGSDGYGIKVGHHDEANSKKYLFKWRLVKEDGNFGPKVYEQIIDLS
>NZ_CP022588.1|WP_101456664.1|266682_267627_-|endonuclease
MMNSKMIKHKFLVSLALISAPVLSLTVLSSTGCNNKNSTTDDNYLIPEKSFYEKSNYYDSLEGLNGNKLYSELIKIQHNHLSGIKSYRYLKTIYKDAFKDLYYEKDGSLLDIYSENPIGKDPYNYSFNDSGSSAKNEGLGFNREHLVPQSWFKKEKLARQDAHHVWPTDILVNNKRDNYPFGKVTNAIFTSKNGTKIDNYLAEPIDEFKGDIARAHLYFAITHASRYKMHSKGNDVFKFLDNKPLVNKYFDTYTKWAKKDQINLFDIVRNNEIAKHQNGLRNPFSDYPELIDLIINPGNKVFVNKGILKSNIAV
>NZ_CP022588.1|WP_115305924.1|267725_269672_+|transketolase
MNINQKVVASMQAIALDSINNAGGGHIGSAIDICPIMYAVVAKHMKISADHPKWISRDRLILSAGHASMSFYSMMHFLGLLSLDEMKNHKRKHSKTPSHPETDAFDFVDASTGPLGQGIAMGVGMAIAEKKMSLKINKGNTKVIDNYTYVIAGDGCLQEGITHEALQIASVMKLNKFILIHDYNKIQLDTKVSDVSNVDLFAYFKALNFNVIEINEASYDNIDKVITEAKKSDRPTYIMVHNIIAPFTPFENTTKGHHGILNSEQTIEFKKAIGLENKAPFEYDSDVYEYGRTIMANKAKSYDEWLVELDNHKKQFPWIHSLLLETINNETNYDFSNILVKQDDLAIRDYFKAFSEIVDFSYPFLIGGGADVGSSTKVRFADSILDYGQRIDYGVREFAMTAINNGINLYGGLKTADSTFLAFSDYAKGALRLGGIMKLPAVHLYSHDSYLVGDDGPTHQPIEQVTVLRSIPNLIVIRPCDKYELVMGLNYAYNNTSTQVAIIGTRQPIKTMHSSKFSEFMAASLIYENKEFDISILSSGSEVELAYKTAVELKNHGIIANVISVPVLQKLVDNDELAIKLKLDKKPMFALEASNDSLWYKLSKYNKIDGHFASEYGFSDKGNVVYDSMGFNVNNIVDKVKQFLSKNA
>NZ_CP022588.1|WP_101456666.1|269734_270289_-|inorganic-diphosphatase
MSNVIEIKIEIPKNSNIKYEYNREDGQIHVDRILRGDFKYPCNYGFIPNALDWDGDELDVLLYSPETFIPGVVVNARIIGAMKMNDSGETDTKLIAVHDDDYRLENINSLKELPEPFLLEIETFFNNYKNWKKPNLTKVLGFEDEKWAFAELEECKELMDKYGKMPKKEFVAKMMKEHPEKYTF
>NZ_CP022588.1|WP_013456603.1|270367_270637_+|30S-ribosomal-protein-S20
MANIKSKVKSIAKQEEFRQRNNAMKTRVRKAIRAAREAVLAKEEGFEKKVFEAHSIIATAVQKGIYHPNKGARKSSRLDHFVNEQKSKQ
>NZ_CP022588.1|WP_101456667.1|270750_271338_-|hypothetical-protein
MQMIVKTAAIEVLRELQKLLESENINYSLGLSNYYEYKNKPELFLINDIEVCLWHKDFYFLLKKYPNHFILPENLPFKSLAPYYKFQGSSIKINVIVGTSDEKINHWYKFRNYKRLIYWGNSKKHWFYYFLGHRTQRVYLHDLVNDLVVERYTKFIILNSEIDKFKAFDNLNFNKRFFVTEKGITIPFFEPFRFL
>NZ_CP022588.1|WP_115305927.1|271431_273609_+|hypothetical-protein
MGKKKTPFFERLLQKNAEQENKNKTTGKSKKSRSWKIATTSTVLVLAVATGITVPLVINSTKKNFIDGYASNTNVASAKIGDHNLDLNFGDFKDIYQNHNTSTSEERLKEIDKIILYYLYDQEQKASAEYQKLWNDSKRSDEKDNNSFRLPTLDELKTKFKNELVDIENNMKLQFGTANWQTEFNKHLVQKYNGAKNIDEAVKNKTFEHIKTDALRRFRLTNGDSKKDEIERKSKDGKHVFGWWHKDNNENKFIELEDKSKLALATDSFVFKDSYKSIDPFIDSYIANEKPRIISEFTIPGIAPAKKNEKWKIDKNIFLRYLFYAKQDTFGLKKVTKGYNVVKEKFNSFDHYIKSVVSKTNGNNIPPDEAIQYSSILNMFSTSKEDIKKNWGTSGLTSISELVTGDNFQKFLANNTKLLFGDNYTDSNSGSNSQKPKEINLFNEIEKIKVEIDKFVNKNGNGVDSSSSGGSSGNGNETVLNNEQAAEYNTKLEKFFTEVNESQNKGLTEKVFEENILKKFAEIFETSGKIQTVYNVKFDNNGSNGAKNVKGILSPEGFKLLIFGNEIKKDDLVKMIKNDFILNSKYKKQLGVRYNALQKLNKQLSRNEYILKMLQDNVFKKYLKTQNNNFATDQNGKKLENVKYNEQSINDLITSSTVAIQFDKISNFIKLSKAAAAWIETRAKNSYDELFELKDGKAYFKYNKDKTAASLVLEYLKKEFNLEAK
>NZ_CP022588.1|WP_101456669.1|273620_275006_+|hypothetical-protein
MKKISKKLLASFSLFTIPSVAIISAKCGNDVETTERLNQQKDLKDAKRVAELEEIWKNFALSYIYKLKPSNKHDAKSWKQNFEKEFKNQQSQLFKDSYDAYKIFALDQLSKNEYYFVEKSLEWKKNDVFKSNPFDWISTKNFPGEQKPEDFIRIWMEDKTGIRKEINNMLLVKAYFGISDLKQLQTIANNIANAGKADKDKSKDQKFEYFVGGKDAKFDLEHYNLVKYAFENKYIQLWKRTFDDKTTSNDLFTKKEIKNIISNKDDFNAFFKDTAEAEKKAKEWEIITKNTEDKELQGYAGIQKDPGTYGLNWNETDNKKRVTGSGTYGAYDALNSILISFNDLRSNGSSVGVKDKDGKSIVSYINQIVPVGKKTKLKTKEDYTKDKVDDSKLKETEVLSFEGTIYKENLNKLAYLFYGKDAKNLLEKAIEAFAHLGVKIKVNKEIASLYEQLKNKVWVEK
>NZ_CP022588.1|WP_101456745.1|275005_275341_+|HIT-family-protein
MDDLFLKIISGEEEGKIFYEDEYCVAFYDKFPIQPGHFLVVPRIKSKNITEADDFTAGHLINTARKLGKQEVLDKGIAGFKILINTGRSADQSIFHTHVHIIPYKEKSKDN

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Crispr_ID: NZ_CP022588_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022588_2

657258-657364

Orphan

Consensus_repeat	Method
ATTTTTATCTTGTTGATTTAGGTTGCCTTGATCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022588_2

>merge|NZ_CP022588|2|657258-657364|CRISPRCasFinder
ATTTTTATCTTGTTGATTTAGGTTGCCTTGATCTTTGTGGGGCATTGATTCATTTTTTTGATTTTCCTCATTATTTTTATCTTGTTGATTTAGGTTGCCTTGATCTT

>NZ_CP022588|2|2|657258-657364|CRISPRCasFinder
ATTTTTATCTTGTTGATTTAGGTTGCCTTGATCTT	TGTGGGGCATTGATTCATTTTTTTGATTTTCCTCATT
ATTTTTATCTTGTTGATTTAGGTTGCCTTGATCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022588.1\|WP_013455979.1\|665249_667982_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NZ_CP022588.1\|WP_080551570.1\|661123_662152_-\|IS30-like-element-ISMbov1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP022588.1\|WP_013954854.1\|637993_640561_-\|variable-surface-lipoprotein	unknown	unknown	gnl\|CDD\|366776
NZ_CP022588.1\|WP_115305982.1\|668231_670094_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224196
NZ_CP022588.1\|WP_115305976.1\|647925_650136_-\|putative-immunoglobulin-blocking-virulence-protein	unknown	unknown	gnl\|CDD\|275319
NZ_CP022588.1\|WP_013455924.1\|663653_663986_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380386
NZ_CP022588.1\|WP_013456269.1\|658325_659384_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NZ_CP022588.1\|WP_115287410.1\|636434_637952_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_013456339.1\|655081_655903_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NZ_CP022588.1\|WP_013456157.1\|662584_663019_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP022588.1\|WP_013455983.1\|659567_660530_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|224383
NZ_CP022588.1\|WP_014829951.1\|643022_645248_-\|putative-immunoglobulin-blocking-virulence-protein	unknown	unknown	gnl\|CDD\|275319
NZ_CP022588.1\|WP_115305978.1\|652424_653672_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_115305974.1\|640589_642836_-\|putative-immunoglobulin-blocking-virulence-protein	unknown	unknown	gnl\|CDD\|275319
NZ_CP022588.1\|WP_013456078.1\|663020_663428_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP022588.1\|WP_115305980.1\|657610_658318_+\|MjaI-family-restriction-endonuclease	unknown	unknown	gnl\|CDD\|370566
NZ_CP022588.1\|WP_013954859.1\|650326_652291_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|223350
NZ_CP022588.1\|WP_013456635.1\|663987_664875_+\|UTP--glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|133021
NZ_CP022588.1\|WP_013456083.1\|653805_654993_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP022588.1\|WP_014829952.1\|645339_647898_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366776

Protein	Function_ID	Function_description	E-value
NZ_CP022588.1\|WP_013455979.1\|665249_667982_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_CP022588.1\|WP_080551570.1\|661123_662152_-\|IS30-like-element-ISMbov1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	9.23257e-27
NZ_CP022588.1\|WP_013456269.1\|658325_659384_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	1.0519e-31
NZ_CP022588.1\|WP_115305982.1\|668231_670094_+\|ABC-transporter-permease	gnl\|CDD\|224196	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only].	1.04486e-09
NZ_CP022588.1\|WP_115305976.1\|647925_650136_-\|putative-immunoglobulin-blocking-virulence-protein	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	0
NZ_CP022588.1\|WP_013455924.1\|663653_663986_+\|hypothetical-protein	gnl\|CDD\|380386	cd06981, cupin_reut_a1446, Cupriavidus pinatubonensis reut_a1446 and related proteins, cupin domain. This family includes bacterial and some eukaryotic proteins homologous to reut_a1446, a Cupriavidus pinatubonensis protein of unknown function that may be related to mannose-6-phosphate isomerase. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	4.68782e-17
NZ_CP022588.1\|WP_013456635.1\|663987_664875_+\|UTP--glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|133021	cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.	5.35032e-119
NZ_CP022588.1\|WP_013954854.1\|637993_640561_-\|variable-surface-lipoprotein	gnl\|CDD\|366776	pfam01732, DUF31, Putative peptidase (DUF31). This domain has no known function. It is found in various hypothetical proteins and putative lipoproteins from mycoplasmas. It appears to be related to the superfamily of trypsin peptidases and so may have a peptidase function.	9.18772e-48
NZ_CP022588.1\|WP_013456339.1\|655081_655903_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	1.9574e-40
NZ_CP022588.1\|WP_013456157.1\|662584_663019_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	3.78069e-82
NZ_CP022588.1\|WP_013455983.1\|659567_660530_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	3.3171e-21
NZ_CP022588.1\|WP_014829951.1\|643022_645248_-\|putative-immunoglobulin-blocking-virulence-protein	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	0
NZ_CP022588.1\|WP_115305974.1\|640589_642836_-\|putative-immunoglobulin-blocking-virulence-protein	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	0
NZ_CP022588.1\|WP_013456078.1\|663020_663428_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	1.79038e-70
NZ_CP022588.1\|WP_115305980.1\|657610_658318_+\|MjaI-family-restriction-endonuclease	gnl\|CDD\|370566	pfam09568, RE_MjaI, MjaI restriction endonuclease. This family includes the MjaI (recognizes CTAG but cleavage site unknown) restriction endonuclease.	3.90182e-32
NZ_CP022588.1\|WP_013954859.1\|650326_652291_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|223350	COG0272, Lig, NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair].	0
NZ_CP022588.1\|WP_013456083.1\|653805_654993_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP022588.1\|WP_014829952.1\|645339_647898_-\|hypothetical-protein	gnl\|CDD\|366776	pfam01732, DUF31, Putative peptidase (DUF31). This domain has no known function. It is found in various hypothetical proteins and putative lipoproteins from mycoplasmas. It appears to be related to the superfamily of trypsin peptidases and so may have a peptidase function.	3.22661e-52

>NZ_CP022588.1|WP_013456339.1|655081_655903_+|DNA-binding-protein-WhiA
MNFTKEIKLEILSKKRNIDDASEFLRGYIYSKCIIDNDIIKLRIYDKSTKSTVLKSLNKIGIKYENKNTVILINKDNFSLIEDFSYPSSFFQGVFAGNGSISNLNNSSYHLQLASNYEEFIDIIINKLNEYDFNFVKIKHNNKFIAYIKKHEKISDFLKAISVTSSFFNFMDNTISRDFLNNTNRLRNIDASNINKIVTASNKYIKNIDLMYELELENKFNDDQLKLFQIMKENPNESLSSIADLYAYKENKSISKSGIYHWLKKLEKTVMKK
>NZ_CP022588.1|WP_013456083.1|653805_654993_+|phosphopentomutase
MAKFKRIFMIVTDGLGIGPDKDQKKFGDAGANTLYSASLSSMFFIDTWKKLGIGNVAQLEGNYHVKSPLAYVSRIQEVSNAKDTLAGHWEMMGIKTEVPFPTFTETGFPEDLITELEKAFDNRKIICNKAGSGTEIIDQYAEEQKQNGSIIVYTSNDSVLQIAAHEEWIGLENLYRYGKAAREICSSKPEWNVGRIIVRPFVGEDGKYTRTFNRHDYANAPEPMILNKLQEAGIEVIAIGKINDIFVGQGISRAIHSSGDADGMDKAIELAQLDEENKFIFVNLVQFDSHYGHRRDVDGFASNVATLDSKLGKLIQVMKKDDLLIMTSDHGNDPAYPGFNHTREMLPLTIYSKLFKEPRVLNDVTGLGTTGNIVARNFGVETVSLTGEDIFDKLV
>NZ_CP022588.1|WP_115305978.1|652424_653672_+|hypothetical-protein
MSNFNLILSREKFNHQQYASVKGIVKSKLNEYYSDKKNSRKINLATVGIYASIPLFIIGAILLLSSIAISFVVIFKTGKNEWLLNPDHFRPLLASLYSLSFVFLIAWCILYPIALRARIFLKKDIVASVNNRDLTDHLLDYINLKPRYENDENGNKIVNFGHISFFKNTSNFKNLSKFNVINNKYEMYEALSNKQFIKMQNIEYRNEEWLAINNLSNKEIKRLKKAKAKVYKGKIQRIEHNLYFGIATKLLNLNKSVSVTLFDEFNNYTPESFKKLDVKDEFSILNISSEDTELMQKWANDISNLSYLNDLKNEFDSIAINSSISLKNSRRDKSFAKDLSIFIKNQEAFIWFKTPTQLLDLSFKSPTLNKDEITELIVNKILDEFYLVYLSLMFLAPFGYDNVVSIDENETIVNQ
>NZ_CP022588.1|WP_013954859.1|650326_652291_-|NAD-dependent-DNA-ligase-LigA
MESKNAKELIKSLVHKINQWNYEYYQLNKPSVSDLEYDKALWELEKLEKEYPEFVLDDSPTFKLGSFASEKFTKFIHKKPMLSLAKAYSYDDIKSFINNISKIIPAERINFNIEPKVDGLSIALHYKKGKLVKAVTRGDGTEGEDVTENIYQIKSIPKLINYLNDLEVRGEVFISKDNFKKINESNNFANARNAASGTLRQLDSTIVAKRNLSAFLYEVVEPEMHNINYQNEALEFMKKLNIPTNPFSKVVEIEELEESISDFAEIKNKLDYDSDGLVIKLNDLQMWEKLGKTSKFPKHSIAFKYDVEVASSTIVDILTSVGRTGKITYIANIHPVILNQTSVRAATLHNHNFIKDMNININDEVNIIKAGEIIPKVISLKNSKNYVDYYKKATNCPSCNSELIEFEGIVDQFCTNDECPEKNVNNIYHFASRNCMNIVGLGLSTVKDFYPKFIKKIKDIFSLYKYKSELILLPRYGEQKVDNILNSIESVKNKAFSKVLFALGIKHIGQRAAKLIADNYVNFAEILDDSELSKLKSTKNIGPKIIESLMEYINNPLNKDLLIYLDSIFNYEGKTKAISNIFSGYSFVITGTLSEPRSHFVKIIEENSGSVSASVSSRTSYVLAGSEAGSKLEKAYKLGVKVINEEQFYKLLEH
>NZ_CP022588.1|WP_115305976.1|647925_650136_-|putative-immunoglobulin-blocking-virulence-protein
MSIFKKKKNRVIFATLAFGAIISSTSGVLIYRSSSDIDLSRVIFSSSTNSELANNKNNINKAIDAIKDNNVVENEKPVVIKPAEVPKIKIPDVAKETNPSPEVNRNSIRPEKTEPLIAKPNVVTKEIFIHGVKVNATIEVTPDRVISDYDKDRKISNVNPYQNIIVSKVLNVEVTQELRDKSVKNALNGNDGTGLFAGTFFVFLNNIITSSKDLKTAEDAVMNNPWIYRDNIHRYERLLNNPNVVNFLKEDAKKEYPNKNFDSIVQRQIWLIHNLDQTKFTKLAKDAESFLSQGLVISPRAAIINEDGTISSHGFAPDDQFNTVTSRISRDNRERRVFGYDSPYGRSPDNVWEGSYPGWKKEDVTSDTKFQKYNVSSADGIKLTKLTREKPEKGSGALNEGLVVEIDASNTSGYDKTLKLINELKKDKVQVTSYRIKNMGNNDPSQKFRDILNALPDNIPQLELFFSAEATNTSSLIALENKRIKELSLYTLGNSLLHKWSFNPLALRNTEWINTVDYNVSRDFRPNTSIPTRITFDTIAFDSDDFKNKSFERINDGLRMVYFARNNEPFFQAGLGPGLNPDHNEGNNSYPMGLDFSRVEGIKSLRNLVFNDVVKSNNTPRKIRRLTLFNNSEAFEISSDELSNASFEHFATDSMDPYSKPKIMFSNGDTTNVIKISDSNELDQKAVWNLSKFFEYNEKLKASKRINVPKDALKLKEQLERLGYKVVNQDGNIIYT
>NZ_CP022588.1|WP_014829952.1|645339_647898_-|hypothetical-protein
MAKMKKILTLSTIPFLSTLLIAAKCTDNIKSDNKSIKLLNDKDFEQLIKNTDISKITSFIFDSNFGPSKPLDKVLPTEIEENPSNLKANVNEKYANSISVIVNGARTQKDDRRNISNTKGEVDIFVTFVNKATNKEISKEIKLTGLASNPIGADHRGAIAGDPLQSIGGESGLLEYHKLSHLDRFNKKDNPMYMAMLKNILSQGGLQQLDIKKTRGLNISDEQIKEFDQKAHSSSFDSYINAALKGFTVPVYEGSEVKLKVLDDAEVGKGPSPIDTVHRNPFRSNGLARTLLNETYKTIAEQTYQVSFTVLNTFEKEKTELRKLKEEIGSWNQEQINSFTFKDRSTLKAEYEFRLQDLEAEKKRLTPEALRGVEQSFADRKKKLDDDYKRESERLEKITKEQLQVEIEKKISDYTAKHTTESGTMWLMDFMLPENGKTATKFYFGTNSHVARVITGPTHKFSMTRLNENVGVGSTLRLSNLDDRFTKFLFDSVPGDAVNVIFQATDFLESKPADFLEKSQAVKFKDVEEFMDFAVIEIDFEKVLQNKESLGVISNNQFLNNEFSNKYKNTEELIKLITNNYQSKVEKHIKFKSGSYLKDYDQIDRPIIINNKNAEEVSKYNNLESLYILGYPLSVGDYFLENYIDEDQQREVRNNFSMWINADDKYYKNVTTQEGAPASHPKENLKRGEFLSYEIGYRSFIDKPGLTDGFITASRTGSDLYSVNGKKYFNYGLHLMPRSYVPMGGASGSSVRNKKNELIGVFHTTNSSAKTGLAAVFRSYGYDYKGLLGSYKLPAYDLIYGGAPGQKNSYREALEKKYQSNGKTYKTNLFKEGVSKENIPAEFKFPENSSSQ
>NZ_CP022588.1|WP_014829951.1|643022_645248_-|putative-immunoglobulin-blocking-virulence-protein
MSMLKTRKNRILVFSLLSGGVLSIASAVAIYKATSDFNFAQSLFSYETYDSQLANSKNVKPAYDSIRDKNVIEKQVEPIKIEEPKPKPEPIIIKTPKADESSSAELPKESPKVIESNPIVHSPNTQRRQITLNGVQVYATVEVTPDRKITDYDRTKGIANREPYQSVIVNKLISVEVTEELRKKTVEKALTSGDGDGLFDGTFFKVIDDLINKDKDSIEIAESVLEGNKQIWENNLFRYKELLDSKNVVNFLKEPAKSEYQTKQFGSINQKYIWLIANLDKTKFVKLAANSDRYLNEGLVVDPRNAKINANGEIDAHAWSPSREFNTVTSRMSRDNSLKRVFGYDSHWWRSPDSITEGSYPGWKKIDVTRTEFSSYKIGNNDGISVHKLEREKKIKEENGQINEGYVVDIDARNPEGYKKTKELIEKFQKDGKKITSYRIKNMGDSDPSQKFRDILAALPEDLPQLELFFSANATNTSSLIALENKKIKELSLYTLGNSLLQKWSFNPWAFKNVAWINSNDYNVSSEYARNVPIATRITFDTIAFDSDDYKTENNFERINDGLRMVYYARNNERIFQGSFGPGLNPDHSEGTNSYPLGLDFSRVEKIKSLRGLVFHDTQNPNNQARKIKRLTLYNKASSFSITSDELNKASLHHIMDPIPGDMDRPKILFSNGEETKSINITTTEKLNSDGIFNLKKFFSLNDALASSKKIIVPEGATELADQLRSSGYNVETGTGSFIYT
>NZ_CP022588.1|WP_115305974.1|640589_642836_-|putative-immunoglobulin-blocking-virulence-protein
MSVLKKKKSRVLILATTAGVIASFSSGAIIYNASSDNSLGMILFSSEDKSLLHPSNNVDYSRTIDSITDKNIKELSKQPKIEKPIEKKIEEKITPPKVEEVPKPPTAAPEPPRITPEVKNYRPEISPLVQRSEKVKIFGVEVNATVLARPDRVVSQKDKDKGIANISGYQNVTVSKLLNIEVTAELEQKVAQNALGGEEGKGIGLFGNNLTLVANQIGITEGLDKAEAVLIKQNPNTWNENIHRYKQLLDSGNFIKFLKPGKEDEYRRLEKEGFKSLNQKYIWIIANLDQSKFTKISQKSLDYLKKGLAIDPRNAIINANGEIDSLVWNVPDQYNKVTSRLSRDNSTRRVFDFDQWYLRSSDSIVQGKYHGWNKTDKTNEYSSYGISTGDGIKVFELTRQNPVNDGSKRNSGIVVEIDAANSSGYGKLKNLINKFKSEKKEITSYRIFNMGETSPTQEFKEILKSLPDNLPQLELFFSAQATNTSSLIALKDKNIKELSLYTMGNSLLDSWSFNPWSLNKVEWINTNDYNVSSQYPPNTPIATRISFDTVAFDQEDYLKEGDYDRINNGLRMVYFVRNNEPFFQGRHGSGTEPDSSEGGNSYPTGLDFSRVPKIKSLRGLVFHDIEKPNNGSRKIKRLTLANSNSSFEITSDELSAADLENLAIGEPEQPKIFFSNGYSTNSMKITLKQGHTKLDPAAIDNLNKYYQYSDALKAGGKKVKVDSNATELKTQLQQLGFMVEEDNGLTFT
>NZ_CP022588.1|WP_013954854.1|637993_640561_-|variable-surface-lipoprotein
MKKNKIILLTSLSIISPSLAVIAAKCNDNKKPSSTNEKSINELNSEQFKKLIESTNDVNQLVSFKFSNGGREVDLSQILPSQVEENTQNLSVTVNSKYTNVISAIVVNANTEKKLPTIISNAKGELDVSLLFTNKKTNETVSKTFKLKGLKTNGGMHHSGLILRDPIDSFGGSDGFKKYLGMTQDERFKHDNNLYLSNIKNYWGDDGALKARGLESVTADQKKEFDEKAAKLKLDSYDSAAAKGFSLPVFNSEGKVEGLKLFEREVAKAPSHVDTLGRDIYKTNGLARTIPNETYKTIAKQTYQVTFNFEKDFRKELAEIDRHIKFFEDKNEEQIKSYLESQIKILDQNLESKLKEINNRWNSYSDEAKKGLKESHKKEIEEAERKHKEERSKYLSWKKDDLINWQREEKKKIEEKKSQKLGGRVSGTMWIMDFVKPENGQRAQRFFFGTNSHVARTLKEHNLTAFSLSRINSNVGVGATLKFNDYDPNFTKFSFSKPSGIIKTVFDGIDFLKTSPKSYIHSSQKADYENVEEYIDFAVVEIDFTSVNPSDVIVWKENKQLHNYAENNKDKLIEEITNGYEKDIKNHIKFKSTSYLDNYNSIDVPLAVDEKIKEQIDNWNSKEGLFILGYPRAEKDYYLERYIDDELIKISKENFSLWVNGDHKWYKQLAVQEGQQPAFSKHVLENGGRLSYQIGYRTFTDKPGLVDGFLGASRIGDDLYSIYDKDSKKENKYVNYGLHLAPRFYAPNGGASGSSVRNKKNELIAVFHSSNDWAKTGLAAVFRSPGKEYDGLFGAYNLPQYDLIYGGGKEQKKSYREALKTMYGTSNSQFKTNLFNKGLEDEHIPSEFKFTTPAK
>NZ_CP022588.1|WP_115287410.1|636434_637952_-|hypothetical-protein
MHLKSINIDEKRIYDDSQSLATKQRKSFIITLYKSVLLSYFFVSMLCLLFLLPQGLFSKKIIGSSYSFIFDFSILTTLEANWIFIFRLSLFGLCYFYGLIKAYLNINKNKEHIKKYGIWFSIYLALSLTGFLLFFTYHSTEVKKLVLMLFLLVAYLFADISYALFSFYTRKKTDPVVYQNKTPLVIDISSRILLTAITMAVFFAWAYSYTDKSGTTFVRMFALFNEGNNSIPYNAFYNAAFKLFKVKSVLNFITVILISLVIGLLLIGLKIYSIWSLAYKQFDAQVYKDRLQFYLVGTLVLVIWLFSLFKLKYPPTHELFSQVQALQYASVLFGIFNLLIAAVFISLLFAKKVKLNSFLIKTTVTALFQLIVWTTYMIANFVNIQHTIGIINLLLTALSSLLIFYFYFRKSKLGIVSNALAVSVNTILLFILILIFGFNQVLLSENNKSLIILNTNLSVAQVIAIVIVLFQMIYLTYSLAQLIWVIKKTSVLNTDVAEKRSYENA
>NZ_CP022588.1|WP_115305980.1|657610_658318_+|MjaI-family-restriction-endonuclease
MKTKQNDDFRYEAIIQNSECLEKINFPKYFSPIVNLANQFTKATSPKNVGQLSELFKQYESYIKSQSSNLIPSVRNWEEYYETAVIEYGFSKDEAVDNAINKIFSMLKNFQNMLNSYDEQSLKNDVGVWVKKLMFEKTFTGLSVQKLIVEHIIKLTGCNYIWRLSTASEESLNIDAFINGKPIQIKPISYEHKKITKAIENIQIPIIEYNLNKNDGNIKIIVSNIKELKNYLKSK
>NZ_CP022588.1|WP_013456269.1|658325_659384_-|site-specific-DNA-methyltransferase
MHTKHTILNIDALKMNSHIDDESVDLVITSPPYPMIKMWDEIFEINENEIKTEADVNSAFLKATQFLNNIWEKVDKSIKPGGIVCINIGDATRNLGGNFRLFSNSGQVINFFIKKGYLQLPSIIWRKQTNAPNKFMGSGMLPAGAYATLEHEWILIFRKGITKREFKNAKDKSLRNESAFFWEERNVWFSDLWDFKGIKQKNDIKNSRDRTAAYPIELPYRLISMFSVKNDIVFDPFLGTGTTTLASMLLQRNSIGVEIDKSLCNHFKEYLVKNDVKLVDNFNDKISKRISSHTEFVKKRVNEGKLLKHYNSILGTEVMTSQEKFISFNKVSSINKIDDKTFEVIYKTLQSE
>NZ_CP022588.1|WP_013455983.1|659567_660530_+|DNA-polymerase-III-subunit-delta
MIFIYGPEKFLIEQEVQRIRKEHNDKVLEIFRFDDQASINDLISSASSNNLFTGSKLFLIYALPFFDKSILKDDLKNADDLINAINVNNQDIFVFINENIISKDKISVNSWTKFIFENNNHEVTMIEAKEISESKLFSLAKSLANKHKLHIDDEAIKLLINKVNNDTLMLSAEIIKLSNLEKHISAEVIENSTDTMLGDDVFAFSNALETNDLGIIWSKYKEKMLEGTEISALIGQISQIFIIAHQIYAYKVCHLSIDQLSRDLKLNSYRIKKISYFLSKIGINKIKKMILSLSKLDKDIKNGLISEKIGFERFLITFFN
>NZ_CP022588.1|WP_080551570.1|661123_662152_-|IS30-like-element-ISMbov1-family-transposase
MKTVSNIVGFKSRSIYNLFDRITIETKRGYAKYQKKCKLCGMDLKGKTIYVISALKFLNLIETRHDSKRLENNSKLLMKYIEIFKFYKQLLYFYLKNRNSFNLDSKAVKQSVASIIFKYIRELEAQGKLQNSYIPSVQNFYRILAKHSAFGLKLDILPYKSNGKYGSRTTVKHETKKKTIGKLITERPESVNLRLNDNDYEMDTVIGLRSDNYCILTLINRKSRMFYCTLSRRNAKAIKENLEKLIKDNNLVIDTLTIDNGSENYKLPEIESIKEIFHCHPYSSSEKGSIENAHRLLRRYIPKGKSIDKYVGQDLKPIADFINSHPRIYKGVSGFKCAKQMQ
>NZ_CP022588.1|WP_013456157.1|662584_663019_+|50S-ribosomal-protein-L13
MRQTTIVNREKANKKWFVVDAENQVVGRLAAFVASVLRGKTKPTFTPNADMGDYVIIINAEKAIFTAKKEEDKVYYHHSGYPGGLKSITAAKLRAKKPTAIVEKAIHGMLPHTKLGNKQRRNLFVVAGPEHKYAAQKPERLEVR
>NZ_CP022588.1|WP_013456078.1|663020_663428_+|30S-ribosomal-protein-S9
MAKSNSSMIEYRGLGRRKSSTARVILRPGSGKFTINNREAKNYLLSDLHIQDAEQPLVLTETKGQFDILVNVRGGGLKGQAGAIRLGIARALLLASDTYRAKLKPAGMLTRDARSVERKKPGLNKARRARQFSKR
>NZ_CP022588.1|WP_013455924.1|663653_663986_+|hypothetical-protein
MDNNVKLINNIYSNNLIKPILGCEKFYNIAQLGNSNIELIYSNSASTDWLINNDHDEVAILVQGSASLLDDSHKKINMQAGDCLFVKKNSRHKILSTSADAIWISIHNKE
>NZ_CP022588.1|WP_013456635.1|663987_664875_+|UTP--glucose-1-phosphate-uridylyltransferase
MNKKVRKLIIPAAGWGTRFLPMTKVVHKELLPILDTPLISLLVDEAIEAGIEEIILIISERKKDIANYFAVNKELETELESKNKLSLLKKVKSTNKEGLIKIVIQHSQNGLGHALACAKNVIKDEPFAIILGDDLIKSKVPAIKQLIEFYYKTGSNILGVQSVSDSDIPKYGIVAPIDENEKSTNFFKIKGAVEKPKLSEAPSNKAILGRYVFNSEILDILSKIEYDGSNEIQVVDAFEKLQNEYKQDIYAFVFEGTRYDLGSVKGFVQANIDYALDNIELKDELTEFINEKLSE
>NZ_CP022588.1|WP_013455979.1|665249_667982_+|cation-transporting-P-type-ATPase
MKWDEAQKFNGLSDEQVAINLQKYGENTLTKSKKINPIVAYFKQFIDPMVILLIIAAIISVSLAIFEHIKGSRNSTQIIIGYVEPAIIMLVILLNSAIGAYQEVKSDQAVRALENKTISNSTVIRNNEVQNIPANMLVVGDLVLLSAGDTINADGRIVNASNFYVVESSLTGESEAVLKTTNWNATDDKTLAENKHLVYSGTFVSNGKASYIVESVGKETQIGKINSSLQNQKKNLSPLQTKLNKLSKWFGYSGIILLFISMLLQIVFNNVSSGSWTNPDVYTNSLITGISLAVAAIPEGLIAFTTVILSIGVSKISKEKGLVKNLLAVETLGSANIICTDKTGTLTENKMTVVDLYLNKKGFLDKIDVNRNEFNELLNSLCFCNDAYLTIDNEEIKEIGDPTETGLLLFALKHSVTKQELLKTNNIIHTLPFDSDRKMMSVLVKDNKSDKIMITKGAPDVVITKCNNIDKDEVMQINNDWAAKSYRVLAFAKKTVNHNSIDFKDEEDLEFIGLVAMIDPPRANVAKSVLEAQNAGIKVVMITGDNLITAKSIATNLGIYDPNGDDICLDGSELKDWDDDKLRNNVQKIAVYSRVNPSDKLRIVKAWQSYDKVVAMTGDGVNDAPALKASDIGCAMGITGTDVAKQSADFILTDDNFNTIVRSVKNGRQIYDKVKTVIMNLLISSVTEVIVMLIGLIAFYYAFKNYFSDSEFYVFSASQLLWINLLTHGLPAIALGIIDSEVDVMHRPPYSKSESIFARGMGINLLWQALVISLVSLLSYTAGALYTIRFYSGLNLLTIASTCAFVTMGIATSINAINLINNNSIFKANIKKYWPVFAAISFSSLFVILVAFVPNLAKVFRMYEHLLTFHNGILLSWSLPLAFVNTICFEIKKLIVNTKTNRTSVLSVSY
>NZ_CP022588.1|WP_115305982.1|668231_670094_+|ABC-transporter-permease
MSTSAFKYSKFAFNITFKKISTFILPILVLAFSLIIGLVYKFVVGQRYYDLAAYIFIFTNATATVIFSSIKALNIFKDFDSEGLEIITLSKPISRNNLILGKLLTLIYFGLIWSLVMLIASLFGLYAIFGVTKIFLVAILFLFVGLMTYLLFGLFTALICYKLSQKIAITIPIALFIPLALGGSLISANSTSNINNAAHFINRPYQYHASGNEANIEPYYLNNNKDELLLVPNGADNKGFSDEQIKYLQKVMNLSNNSSTEWQAYSWLSVPYQLIDIFNFKNKNVFETASVKKFSNLDNYVYHSGLDDVTYNYKLDTNVNLKKYITTDGSNSPKYIVPGALKSNSIFSDKTGDNGLFNYDIIYARAGAEDPNIEFLEDDANFSNEGANLVGRIKWRYIYEALKDEKFNSIAKNFVEKFNSKIVSQNNLVEINKLLMSEISNFINNDDIDNASEINKYENANVTIFDPNALKQKKLKSIFEKRIYFTVALLNYIYFNYSETKIYEAMLKNPNTKESFGNYQYTVNILGHDYKIGGYSSFVENVTPVGNRDSKGKIKNPKIKIRYDLNKSDTNYLFQSADQVYAINRSSQIVNKNAYYPIWIILNAILFVSVFALYRKKEYK

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Crispr_ID: NZ_CP022588_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022588_3

987735-988160

Orphan

Consensus_repeat	Method
ACACCANCTAACCCAGGACAAGGTACACCA	CRT

8 spacers

The CRISPR arrays of NZ_CP022588_3

>merge|NZ_CP022588|3|987735-988160|CRT
ACACCAGCTAACCCAGGACAAGGTACACCAGCTAACCCAGATCAAGGTACACCAGCTAACCCAGGACAAGGTACACCAACTAACCCAGATCAAGGTACACCAACTAACCCAGGACAAGGTACACCAGCTAACCCAGATCAAGGTACACCAGCTAACCCAGGACAAGGTACACCAACTAACCCAGATCAAGGTACACCAGCTAACCCAGGACAAGGTACACCAACTAACCCAGATCAAGGTACACCAGCTAACCCAGGACAAGGTACACCAACTAACCCAGATCAAGGTACACCAACTAACCCAGGACAAGGTACACCACTAACCCAGATCAAGGTACACCACTAACCAGACAGTAACAACCCAGATCAAGGTACACCAGCTAACCCAGGACAAGGTACACCAACTAACCCAGGACAAGGTACACCA

>NZ_CP022588|3|1|987735-988160|CRT
ACACCAGCTAACCCAGGACAAGGTACACCA	GCTAACCCAGATCAAGGT
ACACCAGCTAACCCAGGACAAGGTACACCA	ACTAACCCAGATCAAGGT
ACACCAACTAACCCAGGACAAGGTACACCA	GCTAACCCAGATCAAGGT
ACACCAGCTAACCCAGGACAAGGTACACCA	ACTAACCCAGATCAAGGT
ACACCAGCTAACCCAGGACAAGGTACACCA	ACTAACCCAGATCAAGGT
ACACCAGCTAACCCAGGACAAGGTACACCA	ACTAACCCAGATCAAGGT
ACACCAACTAACCCAGGACAAGGTACACCA	CTAACCCAGATCAAGGTACACCACTAACCA
GACAGTAACAACCCAGATCAAGGTACACCA	GCTAACCCAGGACAAGGT
ACACCAACTAACCCAGGACAAGGTACACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022588.1\|WP_115303289.1\|987054_987417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_013456444.1\|995354_997772_+\|DUF2779-domain-containing-protein	unknown	unknown	gnl\|CDD\|371365
NZ_CP022588.1\|WP_101456648.1\|997870_999304_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP022588.1\|WP_115306045.1\|990724_991753_+\|IS30-like-element-ISMbov1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP022588.1\|WP_115306019.1\|977990_978593_+\|variable-surface-lipoprotein	unknown	unknown	gnl\|CDD\|273344
NZ_CP022588.1\|WP_013456123.1\|989351_990101_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|334163
NZ_CP022588.1\|WP_013456338.1\|1000051_1001473_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP022588.1\|WP_013456387.1\|1001465_1002779_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|235945
NZ_CP022588.1\|WP_101456728.1\|970083_970530_-\|ribosome-assembly-cofactor-RimP	unknown	unknown	gnl\|CDD\|184779
NZ_CP022588.1\|WP_013955064.1\|994013_995165_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274602
NZ_CP022588.1\|WP_174244267.1\|988593_989142_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_013456273.1\|970669_971242_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP022588.1\|WP_115306017.1\|977546_977738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_174245886.1\|978768_979230_+\|variable-surface-lipoprotein	unknown	unknown	gnl\|CDD\|185628
NZ_CP022588.1\|WP_115306015.1\|974359_975367_+\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|181988
NZ_CP022588.1\|WP_101456752.1\|999478_999754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022588.1\|WP_013456029.1\|979585_980998_-\|IS1634-like-element-ISMbov2-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP022588.1\|WP_078086180.1\|973120_974149_+\|IS30-like-element-ISMbov1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP022588.1\|WP_013456539.1\|971317_972688_-\|peptidase-M17	unknown	unknown	gnl\|CDD\|376407
NZ_CP022588.1\|WP_013955063.1\|992033_993878_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668

Protein	Function_ID	Function_description	E-value
NZ_CP022588.1\|WP_115306045.1\|990724_991753_+\|IS30-like-element-ISMbov1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	6.89264e-27
NZ_CP022588.1\|WP_101456648.1\|997870_999304_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	5.41405e-06
NZ_CP022588.1\|WP_013456444.1\|995354_997772_+\|DUF2779-domain-containing-protein	gnl\|CDD\|371365	pfam11074, DUF2779, Domain of unknown function(DUF2779). This domain is conserved in bacteria. The function is not known.	8.74328e-17
NZ_CP022588.1\|WP_078086180.1\|973120_974149_+\|IS30-like-element-ISMbov1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	9.23257e-27
NZ_CP022588.1\|WP_013456338.1\|1000051_1001473_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP022588.1\|WP_013456387.1\|1001465_1002779_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|235945	PRK07139, PRK07139, amidase; Provisional.	0
NZ_CP022588.1\|WP_101456728.1\|970083_970530_-\|ribosome-assembly-cofactor-RimP	gnl\|CDD\|184779	PRK14644, PRK14644, hypothetical protein; Provisional.	1.32681e-44
NZ_CP022588.1\|WP_013955064.1\|994013_995165_+\|hypothetical-protein	gnl\|CDD\|274602	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family. Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa.	8.75484e-13
NZ_CP022588.1\|WP_174245886.1\|978768_979230_+\|variable-surface-lipoprotein	gnl\|CDD\|185628	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.	6.85175e-17
NZ_CP022588.1\|WP_013456273.1\|970669_971242_-\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	7.96166e-69
NZ_CP022588.1\|WP_115306019.1\|977990_978593_+\|variable-surface-lipoprotein	gnl\|CDD\|273344	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds].	0.000656813
NZ_CP022588.1\|WP_115306015.1\|974359_975367_+\|ECF-transporter-S-component	gnl\|CDD\|181988	PRK09609, PRK09609, hypothetical protein; Provisional.	6.73501e-93
NZ_CP022588.1\|WP_013456029.1\|979585_980998_-\|IS1634-like-element-ISMbov2-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.57572e-07
NZ_CP022588.1\|WP_013456123.1\|989351_990101_+\|site-specific-integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	1.24985e-18
NZ_CP022588.1\|WP_013456539.1\|971317_972688_-\|peptidase-M17	gnl\|CDD\|376407	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase.	1.93445e-157
NZ_CP022588.1\|WP_013955063.1\|992033_993878_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0

>NZ_CP022588.1|WP_115303289.1|987054_987417_+|hypothetical-protein
MEDDLGTPAKPRQGTDAKAGQSPAGKSGQGTDAKAGQSPAGKSGQGTDAKAGQSPAGKSGQGTDAKAGQSPAGKSGQGTDAKAGQSPAGKSGQGTDAKAGQSPAGKSGQGTDAKKQDLTQ
>NZ_CP022588.1|WP_013456029.1|979585_980998_-|IS1634-like-element-ISMbov2-family-transposase
MAIPKDILKIPRPSSTRVKATSKEGIYNVIQRTSIRKNEKIIPVEKGVIGKIINGVFQSIEKQTYEVDIKSYGLFALNEKLNNHIFRELLNFYDFEDARKLYVIASLRTMFSDIKNEHLKHEYDTNFISEIYPKCALSPNTISSFLEKIGKSSSKMEDFMNKRLEEFSNHSIVIDGMLKNNTSETNIFSEMSRKSRTKGAQNLNLIYAYDINAQEPVASSVYPGNMLDYTAFRDFLRTYKIKNGFLILDRGFDDKECKNLMREKNIKYLMPIKINHTFKKFNLKSGFNFTFTYDDDTIRAKKIIINNKYYLCYKSTLTEMVEKKNFISRAHKKGAYDEIKLLERENLFGLIIFECNYDLDLKDIYVAYKKRWEIELLFKQFKNVLEQNEANVQGNYRLLATEFINFLSSIMLCRIKNHLLNSGVLDNRTISETFRYLSKIIKKRKSRKREEWDDVETLKYIKELKSILKI
>NZ_CP022588.1|WP_174245886.1|978768_979230_+|variable-surface-lipoprotein
MKKSKFLLLGSVASLASIPFVAAKCGETKEEEKKPETPKGPEAPKGPETPKGPEAPKGPETPKGPEAPKGPEAPKGPEAPKGPEAPKGPEAPKGPEAPKGPEAPKGPEAPKGPEAPKGPEAPKGPEAPKGPRNKKMLEELVKKAEEAEKSFKK
>NZ_CP022588.1|WP_115306019.1|977990_978593_+|variable-surface-lipoprotein
MKKSKFLLLGSVASLASIPFVAAKCGETKEEEKKKPEGDQKPGGDKNPGGDKNPGENTEPDKNPGGDKNPGGDKNPGENTEPDKNPGGDKNPGENKTPEGNKTPEGNKTPEGNKTPGENKTPERNPDEGSVNRDRGITWDKNYPWGKDDEKGNEDYEDEENKVEEEKFDKEDLEEFKKESDKAEKEDEEDEDSEAESGKK
>NZ_CP022588.1|WP_115306017.1|977546_977738_+|hypothetical-protein
MKMKENKVEEEKFDKEDLEEFKKESDKAEKEDEEDEDSEAESGTMAKGPGAQSGTMSKGPGAQ
>NZ_CP022588.1|WP_115306015.1|974359_975367_+|ECF-transporter-S-component
MKQVLNAIKRKWQDFSFFPKLTIRKISFIGILIAISVVIFVVFASFVPLISIPTYKISFIGLPIKISGLIFGPLVGGIVGLISDIISFSLFPTFYNFYYTIVAIVDGVVAGLVGIIFLRVLNYAFGGQFRDASLDNAIFKQKEKLYRLVLFDPQSPKIAKVKTKIIALGEQRKSANVINQEKKLLNINLFAASLLIVLVMLFIFFVVFYVINETTIQQFSIIPNKIGLYALMTSGYVTMFIFLIVARFKMHPKRFLVIIPIVIFSAIIELINVPLLSLADYSTTGASSESGSIITYMFQHIVFSPIKIWFNMFVIFFTYNVINPLVNKNSSIMYE
>NZ_CP022588.1|WP_078086180.1|973120_974149_+|IS30-like-element-ISMbov1-family-transposase
MKTVSNIVGFKSRSIYNLFDRITIETKRGYAKYQKKCKLCGMDLKGKTIYVISALKFLNLIETRHDSKRLENNSKLLMKYIDIFKFYKQLLYFYLKNRNSFNLDSKAVKQSVASIIFKYIRELEAQGKLQNSYIPSVKNFYRILAKHSAFGLKLDILPYKSNGKYGSRTTVKHETKKKTIGKLITERPESVNLRLNDNDYEMDTVIGLRSDNYCILTLINRKSRMFYCTLSRRNAKAIKENLEKLIKDNNLVIDTLTIDNGSENYKLPEIESIKEIFHCHPYSSSEKGSIENAHRLLRRYIPKGKSIDKYVGQDLKPIADFINSHPRIYKGVSGFKCAKQMQ
>NZ_CP022588.1|WP_013456539.1|971317_972688_-|peptidase-M17
MKLFESISSKRDNNMLLKATFADETKCNFLIKKDNSITEYHEKNEALVYFSKKESLSFSDLEGFFKGLAVNANRNYQVDLASFATEKVEIVKVIDAFVRAVYFAKGEIFSARKKDEKEEIELVPFIETISEQANAQFNKSLILAKATNFARDLQIMPPNICNSEFLAQKVAEDLEQYKNLKVTVLKKKEIEELKMGLLLSVNKGSVYEPRVVVIEYNGDKDSSEKTVMIGKGITFDSGGYSLKPSRSMVSMKFDMSGSAIVAATMKAIAQLKPKKNVSAIMCITDNRVNGDASLPDSVWVAMNGKSVEINNTDAEGRLVMADGLVYGAKVLNATRLIDVATLTGAMVVALGQTYTGTWATSDKAWEDIKKAAENANELVWRMPLDKAFAKNIKSSKVADLKNTDFSGNAGSCSAAMFLEEFTEGVEHIHLDVAGTAEISEVPQGIMVKTLTELSLL
>NZ_CP022588.1|WP_013456273.1|970669_971242_-|thymidine-kinase
MYLKSGLGQLEVITGPMFSGKTEELLKRINILKIAGINSLVIKPKFDTRFSKDEIVSRTGARHKAINVANSKEILKYWNPDYMCVAIDEVNFMDEDILTVIDELIVKGVRVICSGLDMDFKRRPFDVMARVLASADNILKLKAVCLECKSDAGFSFRKVKSDELNLLGDSEYEARCRVCHIKGEAKKAMR
>NZ_CP022588.1|WP_101456728.1|970083_970530_-|ribosome-assembly-cofactor-RimP
MNWKNLLVNKFGNTIADVKLLKEDGLLILEVTASSTDLKAIEELTKLINEYIDSLDVELDFDSLSVSSPGFKLDYETDELGNHIGEIIDVKLNQNVNKLDSYTGELLEDDDESILLKWNCKGQFRKVRIEKSNIKEARMNIEYASRIK
>NZ_CP022588.1|WP_174244267.1|988593_989142_+|hypothetical-protein
MSAILDSSIWLWVVVEPSELLGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGPLGVSGFFSSSLVSPHLAATKGIEAKDATDPSSKNFDFFINLSSPFKAINSLKMLYKSINKYQK
>NZ_CP022588.1|WP_013456123.1|989351_990101_+|site-specific-integrase
MIDPFIEFCDRKNLARSTVAAYKNILANILSVEKNKHLAIMKIITDQKLKANTQRLYRQVYALYLKFSNQKKNYKDISILKVKPMQSVYRPILTKAQIYRRTNIMLNDKPKIIFYKLLIRFMFETGIRIGELKTISEEDKRIYVIGKGNKNRQIFYNAETYENLKLFKNRIKTVSYITVSKAIKDLLGNEYSPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFTYQQLDENENYRIYKKIMLNSK
>NZ_CP022588.1|WP_115306045.1|990724_991753_+|IS30-like-element-ISMbov1-family-transposase
MKTVSNIVGFKSRSIYNLFDRITIETKRGYAKYQKKCKLCGMDLKGKTIYVISALNFLNLIETRHDSKRLENNSKLLMKYIDIFKFYKQLLYFYLKNRNSFNLDSKAVKQSVASIIFKYIRELEAQGKLQNSYIPSVQNFYRILAKHSAFGLKLDILPYKSNGKYGSRTTVKHETKKKTIGKLITERPESVNLRLNDNDYEMDTVIGLRSDNYCILTLINRKSRMFYCTLSRRNAKAIKENLEKLIKDNNLVIDTLTIDNGSENYKLPEIESIKEIFHCHPYSSSEKGSIENAHRLLRRYIPKGKSIDKYVGQDLKPIADFINSHPRIYKGVSGFKCAKQMQ
>NZ_CP022588.1|WP_013955063.1|992033_993878_+|ribonuclease-J
MTPTRIIPIGGVQEIGKSTLIIEHDKHIVIIDAGIKFADTATTGIKGIIPDYKYLKERKDNIEGLFITHGHEDHIGGVVYLVKQVHLKRIYAPKIAIQYLKLKFDEHKITHKVEFIEIEKSAVHEFGNGKIKVDFWTAQHSIPDAFGIRVTTPNGSVMCTGDFRFDYNPIGEIYTDFTKLDAIGKEGLTVLLSDSTNAMRPSHSPSENDILIGIERHMRSATRKIIVTAFASNLTRVKAIIDLAVKLKKKVACFGRSMVQGIKIGRKLGNIKAPSSIFVEKRDIAKVPENQLVVLTTGSQGEQLAALSRMSYGKHANIKVEKGDMVIFSSNPIPGNRMVVELLINRLSKLGAIIKENGPDGYLHTSGHAYKHEHDKIFQLTRPKFFIPYHGEYRMCVAHGESAIRNGVDKKNVFIPEIGQVFNMVDNQIIPTNEKIEYGPIYIDGTTTLSISGSTIKERSELSNSGFVNIIMTIDKEKNEIVGRPHLISRGSFYVKTSLALVEEAKRIAHGAVLYRIKNNANWNIVELKQLIIDRLEALFYKEKRRRPIIIPTFLFVKEENDPLFDKVTIKFENKNIDSKKREANQKVLKELQEEIFGSSIEFSEDFRDEVDDE
>NZ_CP022588.1|WP_013955064.1|994013_995165_+|hypothetical-protein
MIKRVTKLLSSQLVILPMVLPLLSSKCDKQTNNNDSNSSEITDTSSNYFDERANLASPATLPREILGLYPSLIGSTILNNLKLEANRKQNPNSDYATNADNSGFGLLFKKEKNLFIDEMPSLHKELEKIFFNFNPKYTSKYEAKIVAAGFNDLEGELTLGIQILYRPDTAIENTNNNTYFQSFKFTGFRKFDLTNSDNNVLKLKFDNQNLANIFKKWRKHMIHYARHTLKKAMTENTSLASINNPNKLRFVRYLFTPHFLLSEIPLNIKDDTNIYNIKDNNLTLFDVFSRDHKAIVYPFYGSLTSFDDIFDIPNNDSVKFDIYKNSENKEILKITINLTIVPGVQNIYTNIERSTKDKKKVTFSFQVEAPFDELLPDNNPVDN
>NZ_CP022588.1|WP_013456444.1|995354_997772_+|DUF2779-domain-containing-protein
MAEQNKPKIINESKFVKSYFNQDYFLWHTAQEFENKYIAEMMEQNVNDDFSIDDEYDESDIGHSIWTRLINENLDTSIQTVNAQSSIFSNIQNQLNLWATGQLFKGLRYKIVSDKGDIKSKINETNKFLNDPTCDVIINGYFGYETDEFVIYSNPFAFNKINKGLYLVKLSTHVKIDSLLSLKFSYEILKKQNINLDNAYVIIVDSQMPQTKGICKFICTELCHMSKNKYAIEKESWNTINQTLRHTNNPYFLDRKPFVNYINQGWALVKNELPFNDLNSKLPTTFNYIKCLKNNYGLKSIKNADKRNSFFKFDVDNPFDPDLYLGNFDLIINRIINAYKVNKPDLSFFDKNIDDNTALNMDYNNFGKNDLLTKNYLLASLGKNNLFNRQIFTDLKLNLIVNNNADKSFNNAKNSFIEKVEQVYKTGDFIKSLVIEKYLSELHIKDQKIVWYDYESFMSLLPVIDDFSPYSQIVNQVSIIDTINGQIIPSTQADIVYDPKNISIFDLISILKNLYDRQGDKYVVYNKSFENTRNMEIASWAQSHSSDEIFAEELYNKLAIKPDDVMNFANYINNRTIDLYELFSRPSKKMNFDDGKIYQNIHIAVDETKLNSKVISKHSPSVKFSQKDYIIEPKIDKKSFTFTINDVDNQLPDELTNLTYSQESGMASILNLNIFLKDLKGMGSIKKVEHLITSKKISLEHMITPYPDLKKVHNGSEAMEIAIKRYANLIDGYIWEDNLSNLKKYCHNDVLAMIMTFNFVEKMVSDIFPELNSLKYTFDSDHQYLLNRYKWKIDVINYKEKATVN
>NZ_CP022588.1|WP_101456648.1|997870_999304_-|transposase
MAIPVEIRQVERPKNTVVKNYFGKFKVVKRTSKYVNGKAIPKDLAIVGEIVDYKFVPFETPIPVGTRSKKNQEKTDIKDYGNIAIFTKNSNDILEKLLTHFDSSTAYKLYVIAILRCAYPKAVNRDLKFYYETSFMSELFKKIGLSESLLPDFFEKTGRAYSNIHNFMLDRINEFKGRVQIIDGTLKSYNSDEVTFSQWSRKGKVKGSKDFTLLYTCDLYTKEPIYHRPYQGNMLDSTIFEDFLENVPSTGEILVADKGFRTKAITELLEQNKNVKYLLPLKRNTTLIRAEKLDENLAPVKIKDKQLLGSKKQIDGKFFYLFKDLEIAGKESVGNYQKHLKRNTFNIDEFNKNNQFFGVIVFESNVDLSLEDVYTLYDQRWEIEEMFNFYKNILELSKTRVHSEMKVYTTEFINYLSLIIATKVKNNLIRLNLHQNYSFRQIIEYLRSYKVEVINDTEWKKRKVLKYVQGLAELLEI
>NZ_CP022588.1|WP_101456752.1|999478_999754_-|hypothetical-protein
MKEENKTKNKSLSSSTTESTKIAEASKTEAPKPKLAVRDSSNDSIFETWYTGSITKEKATLKKSKTEETPEAKIFDRLYPSLRIKYKSYTP
>NZ_CP022588.1|WP_013456338.1|1000051_1001473_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MNNFETIIGIEIHLELNTKTKMFSPSKIDFEADANTTVNQIDLGYPGTLPLLNKEAVISGVKLAKALSMTIDNELHFDRKNYFYPDLPKGYQITQFYRPIGSNGHFVINTESGSKKINIERIHLEEDTARQYHGEKTKLDYNRAGVPLIEIVSYPEISSADEAVAYVDMIRRIALSLGISSAKMEQGSLRADVNISLRPKGYKGFGTKVEIKNMNSFRAIRNAIDYEIKLQTQKILTNEPILQQTKRYDEESMSTVVMRTKTGTIDYKYFPEPNIPFIKLSDEFINNVKLNELPWEKEERYKNEGIQDIYIKSLINDIELANYFDSINYFDRSKLSKLFFAEVVSLANSKNVKAYKLGIKPQALESAIGLLDDEVISGKSFKKLVPLLINYDGDLNKLIKENNLEQISDEQTITKWIDDVIERNETLVAEYTERSEKVIKFVLGNVMKLSGGKVNPQKANDLLMKLLNKKFKQ
>NZ_CP022588.1|WP_013456387.1|1001465_1002779_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MKLENKGNFNKALDELKNDKNNCVSSLYTKKRASIDGILENSVFTIKDNYATDDQKATASSMILKNFKPYYNATAVQKLLDAGAIPVAKVHCDELALGGTGKHSAFGLITNPFDSSRLAGGSSSGSAATLTSNVSFSLGSDTGDSVRLPASYNGIVGFKPSYGAISRFGLFAFASSLDTVAYFAHNVNDIAVLSRVMFGKDPRDMTSLDVKIDNVIKAKPQKIGVLNVKGLEKFVDEEYKKLINKLSKSTTVELVSIDEKLYKAIKPVYEIISFSEASSNLANLNGIAFGSRKDGDNWEEIMTNTRADGFGEMVQLRLALGSFFLHSKNQEKMILKAQKVRRLIKEHIDSILNQYDVVIYPCAADYAPYIDDSKNRSHGYMDYILTGANLSGNPSLSLPWIKNDLFVNLSIDSKIYDDEKLLSYALWIEEFLKENNE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP022588_3	3.1\|987765\|18\|NZ_CP022588\|CRT	987765-987782	18	NZ_CP022588.1	987717-987734	0	1.0
NZ_CP022588_3	3.3\|987861\|18\|NZ_CP022588\|CRT	987861-987878	18	NZ_CP022588.1	987717-987734	0	1.0
NZ_CP022588_3	3.8\|988113\|18\|NZ_CP022588\|CRT	988113-988130	18	NZ_CP022588.1	987079-987096	2	0.889
NZ_CP022588_3	3.8\|988113\|18\|NZ_CP022588\|CRT	988113-988130	18	NZ_CP022588.1	987717-987734	2	0.889

1. spacer 3.1|987765|18|NZ_CP022588|CRT matches to position: 987717-987734, mismatch: 0, identity: 1.0

gctaacccagatcaaggt	CRISPR spacer
gctaacccagatcaaggt	Protospacer
******************

2. spacer 3.3|987861|18|NZ_CP022588|CRT matches to position: 987717-987734, mismatch: 0, identity: 1.0

gctaacccagatcaaggt	CRISPR spacer
gctaacccagatcaaggt	Protospacer
******************

3. spacer 3.8|988113|18|NZ_CP022588|CRT matches to position: 987079-987096, mismatch: 2, identity: 0.889

gctaacccaggacaaggt	CRISPR spacer
gctaaaccaagacaaggt	Protospacer
***** ***.********

4. spacer 3.8|988113|18|NZ_CP022588|CRT matches to position: 987717-987734, mismatch: 2, identity: 0.889

gctaacccaggacaaggt	CRISPR spacer
gctaacccagatcaaggt	Protospacer
**********. ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

83116 : 94477

Bodo_saltans_virus(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013954527.1\|83116_84097_+	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	3.9e-15	27.1
WP_013954528.1\|84100_84922_+	alpha/beta hydrolase	G9E3U1	Emiliania_huxleyi_virus	2.3e-08	32.5
WP_013954529.1\|85005_85770_+	hypothetical protein	NA	NA	NA	NA
WP_013954530.1\|85762_86743_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	8.1e-53	40.6
WP_115305906.1\|86867_91244_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	6.2e-12	31.8
WP_013954532.1\|91649_92873_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	1.5e-61	35.1
WP_013456569.1\|92862_93828_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.6e-29	40.9
WP_013954533.1\|93817_94477_+	uracil-DNA glycosylase	A0A068EP41	Falconid_herpesvirus	1.6e-28	36.4

DBSCAN-SWA_2

156731 : 165585

Mycoplasma_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101456650.1\|156731_158573_-	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	2.1e-17	19.1
WP_013456016.1\|158835_160248_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.2e-81	68.7
WP_013456380.1\|160231_161068_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	2.5e-87	62.0
WP_013456215.1\|161060_161954_+	spermidine/putrescine ABC transporter permease	Q6GZ01	Mycoplasma_phage	2.1e-92	62.3
WP_013455994.1\|161940_163842_+	membrane protein	Q6GZ00	Mycoplasma_phage	3.9e-80	34.2
WP_013456051.1\|164066_164267_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_013455927.1\|164568_165585_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.4e-37	33.6

DBSCAN-SWA_3

190185 : 349886

111

Faecalibacterium_phage(16.67%)

tRNA,integrase,transposase

attL 277859:277878|attR 311948:311967

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101456658.1\|190185_191469_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_013954601.1\|191627_192011_+	membrane protein	NA	NA	NA	NA
WP_013954602.1\|192148_193138_-	lactate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	1.8e-39	32.9
WP_115305916.1\|193547_194348_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_013954605.1\|194463_194625_+	hypothetical protein	NA	NA	NA	NA
WP_013954606.1\|194801_195254_+	hypothetical protein	NA	NA	NA	NA
WP_013954606.1\|197417_197870_+	hypothetical protein	NA	NA	NA	NA
WP_013954607.1\|198037_200461_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_115305918.1\|200447_202175_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	4.3e-41	30.3
WP_013954609.1\|203972_205097_-	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	3.8e-22	28.6
WP_075271984.1\|205225_205615_-	hypothetical protein	NA	NA	NA	NA
WP_013954611.1\|205742_207248_-	trigger factor	NA	NA	NA	NA
WP_013954612.1\|207614_207773_+	hypothetical protein	NA	NA	NA	NA
WP_013954613.1\|207901_209311_-	hypothetical protein	NA	NA	NA	NA
WP_078086166.1\|210388_211417_-\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	3.8e-21	33.8
WP_013954618.1\|215738_216125_-	hypothetical protein	NA	NA	NA	NA
WP_013954619.1\|217992_218910_-	5'-3' exonuclease	A0A0N7ACJ6	Bacillus_phage	1.3e-31	31.1
WP_013954620.1\|218911_221845_-	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.0e-87	34.4
WP_013954621.1\|222353_223778_-	hypothetical protein	NA	NA	NA	NA
WP_172792932.1\|224412_225792_-	hypothetical protein	NA	NA	NA	NA
WP_172792933.1\|225737_228074_-	S8 family serine peptidase	NA	NA	NA	NA
WP_078086163.1\|230726_231755_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
WP_115305920.1\|232331_233744_+\|transposase	IS1634-like element ISMbov2 family transposase	NA	NA	NA	NA
WP_014829881.1\|234048_235482_-	hypothetical protein	NA	NA	NA	NA
WP_172792934.1\|236119_237499_-	hypothetical protein	NA	NA	NA	NA
WP_041323925.1\|237444_239760_-	S8 family serine peptidase	NA	NA	NA	NA
WP_013954624.1\|239934_240384_-	hypothetical protein	NA	NA	NA	NA
WP_101456660.1\|240705_242547_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_013954626.1\|242533_242986_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_049773792.1\|243096_244812_+	hypothetical protein	NA	NA	NA	NA
WP_013954628.1\|244956_245976_+	hypothetical protein	NA	NA	NA	NA
WP_101456661.1\|245976_246525_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_013455969.1\|246592_247153_+	peptide deformylase	NA	NA	NA	NA
WP_101456662.1\|247165_248563_+	CvpA family protein	NA	NA	NA	NA
WP_013954631.1\|248676_250593_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.7e-119	41.9
WP_013954632.1\|250606_253192_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	9.8e-90	29.6
WP_013954633.1\|253333_254263_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_075271093.1\|254264_254981_+	ribonuclease HIII	NA	NA	NA	NA
WP_013954635.1\|256825_257800_+	DNA cytosine methyltransferase	R4TMW4	Halovirus	1.6e-48	38.4
WP_080551570.1\|258400_259429_+\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
WP_013456076.1\|259967_260297_+	hypothetical protein	NA	NA	NA	NA
WP_101456663.1\|260540_261236_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_014829885.1\|261219_262206_-	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	2.2e-42	35.7
WP_115305922.1\|262424_263147_-	hypothetical protein	NA	NA	NA	NA
WP_013455927.1\|263993_265010_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.4e-37	33.6
WP_115306037.1\|265173_266001_-	hypothetical protein	NA	NA	NA	NA
WP_101456664.1\|266682_267627_-	endonuclease	NA	NA	NA	NA
WP_115305924.1\|267725_269672_+	transketolase	NA	NA	NA	NA
WP_101456666.1\|269734_270289_-	inorganic diphosphatase	A0A1B1ISK6	uncultured_Mediterranean_phage	1.6e-21	39.1
WP_013456603.1\|270367_270637_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_101456667.1\|270750_271338_-	hypothetical protein	NA	NA	NA	NA
WP_115305927.1\|271431_273609_+	hypothetical protein	NA	NA	NA	NA
WP_101456669.1\|273620_275006_+	hypothetical protein	NA	NA	NA	NA
WP_101456745.1\|275005_275341_+	HIT family protein	NA	NA	NA	NA
WP_101456670.1\|275459_276158_+	hypothetical protein	NA	NA	NA	NA
WP_004024364.1\|276211_276364_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_115306039.1\|276803_277832_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	3.2e-20	32.9
277859:277878	attL	NA	NA	NA	NA
WP_173674353.1\|278033_278192_+	hypothetical protein	NA	NA	NA	NA
WP_013456491.1\|278365_278851_+	thiol peroxidase	NA	NA	NA	NA
WP_013456378.1\|278888_279125_-	hypothetical protein	NA	NA	NA	NA
WP_101456671.1\|279114_280179_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_075270987.1\|280247_280532_-	hypothetical protein	NA	NA	NA	NA
WP_075270988.1\|280553_282104_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	2.1e-79	35.1
WP_075270989.1\|282106_282892_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_101456672.1\|282912_285102_-	ribonuclease R	Q0GXV6	Lactococcus_phage	1.3e-71	33.3
WP_101456673.1\|285104_285347_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_013456283.1\|285689_286277_+	guanylate kinase	A0A0M5KCK5	Mollivirus	1.2e-08	38.6
WP_013456579.1\|286282_287035_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_013456514.1\|287052_288051_+	serine/threonine protein kinase	Q85453	Moloney_murine_sarcoma_virus	4.3e-17	32.2
WP_013456585.1\|288062_288908_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_013455939.1\|288894_289557_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_013456032.1\|290419_292645_-	AAA family ATPase	A0A2K9V9X6	Bandra_megavirus	3.4e-30	26.6
WP_013456112.1\|292790_294224_-\|transposase	transposase	NA	NA	NA	NA
WP_013954662.1\|294696_295740_+	AAA family ATPase	A0A2H4UTU5	Bodo_saltans_virus	9.9e-09	29.0
WP_013954663.1\|295741_298012_+	S8 family peptidase	NA	NA	NA	NA
WP_013954664.1\|298241_301382_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.3e-24	24.8
WP_013954665.1\|301383_303024_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_075278710.1\|304378_304909_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013954667.1\|304905_305598_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013954669.1\|305678_306647_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	3.8e-31	29.2
WP_081375095.1\|306872_307334_+	hypothetical protein	NA	NA	NA	NA
WP_013456029.1\|308825_310238_+\|transposase	IS1634-like element ISMbov2 family transposase	NA	NA	NA	NA
WP_078086163.1\|310892_311921_+\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
WP_101456674.1\|312959_314579_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	7.7e-109	39.8
311948:311967	attR	NA	NA	NA	NA
WP_013954674.1\|314818_317485_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	4.2e-80	27.3
WP_013954675.1\|317497_318208_+	signal peptidase II	NA	NA	NA	NA
WP_115305929.1\|318402_320262_+	hypothetical protein	NA	NA	NA	NA
WP_013954676.1\|321211_321808_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_013456191.1\|321788_322751_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.5e-06	26.5
WP_013456399.1\|322787_325154_+	membrane protein	NA	NA	NA	NA
WP_013456468.1\|325224_326091_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_013456636.1\|326083_326926_+	HAD family phosphatase	NA	NA	NA	NA
WP_013456459.1\|326957_327845_+	hypothetical protein	NA	NA	NA	NA
WP_013456065.1\|327935_328202_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_075271075.1\|328355_329147_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_115266442.1\|329272_330490_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.5e-13	32.5
WP_013456385.1\|330555_331530_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_013456634.1\|331516_332341_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_115305931.1\|332489_334259_+	hypothetical protein	NA	NA	NA	NA
WP_013954682.1\|334297_335365_-	variable surface lipoprotein	NA	NA	NA	NA
WP_075271184.1\|335654_337655_+	DHH family phosphoesterase	NA	NA	NA	NA
WP_013456489.1\|337635_338091_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_013954685.1\|338080_339556_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	6.0e-52	33.5
WP_101456679.1\|339555_340848_+	DUF21 domain-containing protein	NA	NA	NA	NA
WP_115305933.1\|341206_342229_+	variable surface lipoprotein	NA	NA	NA	NA
WP_014829901.1\|342638_343013_+	hypothetical protein	NA	NA	NA	NA
WP_013456595.1\|343242_344151_+	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
WP_013455927.1\|344459_345476_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.4e-37	33.6
WP_013456502.1\|345733_346033_-	PTS transporter subunit EIIB	NA	NA	NA	NA
WP_075271416.1\|346211_347111_+	variable surface lipoprotein	NA	NA	NA	NA
WP_101456648.1\|348452_349886_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

441122 : 514708

Faecalibacterium_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078086171.1\|441122_442151_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	5.0e-21	33.0
WP_013954737.1\|442594_444739_+	hypothetical protein	NA	NA	NA	NA
WP_038582878.1\|445557_446598_+	zinc-dependent alcohol dehydrogenase	A0A0G2YAX3	Acanthamoeba_polyphaga_mimivirus	8.0e-35	29.2
WP_013954740.1\|446641_447889_-	HNH endonuclease	NA	NA	NA	NA
WP_075271400.1\|447873_448671_-	DNA (cytosine-5-)-methyltransferase	A0A140HLV8	Bacillus_phage	9.8e-25	40.5
WP_013954742.1\|448597_449080_-	hypothetical protein	NA	NA	NA	NA
WP_115287402.1\|450784_451699_-	variable surface lipoprotein	NA	NA	NA	NA
WP_115276529.1\|451944_452973_-\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	1.1e-20	32.6
WP_013954750.1\|453295_454711_-	DUF285 domain-containing protein	NA	NA	NA	NA
WP_013954751.1\|455008_456490_+	AAA family ATPase	E3T5S4	Cafeteria_roenbergensis_virus	6.1e-28	27.7
WP_013954995.1\|456726_457971_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.1e-09	27.0
WP_013954753.1\|461103_461964_-	hypothetical protein	NA	NA	NA	NA
WP_115305946.1\|462137_462866_-	purine nucleoside phosphorylase DeoD-type	NA	NA	NA	NA
WP_013954755.1\|463035_464160_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_013954756.1\|464170_466813_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	6.5e-65	36.1
WP_013954757.1\|466805_467246_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_013954758.1\|467235_467964_+	hypothetical protein	NA	NA	NA	NA
WP_013954759.1\|468245_470381_+	hypothetical protein	NA	NA	NA	NA
WP_013954760.1\|470555_471278_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	1.4e-06	33.8
WP_162293106.1\|471702_473304_-\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013954761.1\|475138_475591_+	SocA family protein	A0A0N9SGM1	Paenibacillus_phage	2.0e-22	41.0
WP_013954764.1\|476190_476415_+	variable surface lipoprotein	NA	NA	NA	NA
WP_013954765.1\|476696_477548_+	DUF285 domain-containing protein	NA	NA	NA	NA
WP_014829922.1\|477766_478036_-	hypothetical protein	NA	NA	NA	NA
WP_014829924.1\|479186_480548_+	hypothetical protein	NA	NA	NA	NA
WP_038582722.1\|480548_482558_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_013456441.1\|482615_482882_+	hypothetical protein	NA	NA	NA	NA
WP_013954770.1\|482874_483726_+	hypothetical protein	NA	NA	NA	NA
WP_013954771.1\|483718_483943_+	hypothetical protein	NA	NA	NA	NA
WP_013954772.1\|483962_484394_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_013954773.1\|484406_485060_+	hypothetical protein	NA	NA	NA	NA
WP_014829925.1\|485287_486796_+	hypothetical protein	NA	NA	NA	NA
WP_013456404.1\|487263_487569_+	hypothetical protein	NA	NA	NA	NA
WP_038582731.1\|487636_489874_+	membrane protein	NA	NA	NA	NA
WP_013954660.1\|491246_492635_-\|transposase	transposase	NA	NA	NA	NA
WP_013954780.1\|494373_494961_+	hypothetical protein	NA	NA	NA	NA
WP_013954781.1\|494963_499487_+	hypothetical protein	NA	NA	NA	NA
WP_013954782.1\|499821_500466_+	hypothetical protein	NA	NA	NA	NA
WP_013954783.1\|500784_502017_+	UPF0236 family protein	NA	NA	NA	NA
WP_013455996.1\|502929_503421_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_013456577.1\|503410_503962_+	hypoxanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_013456513.1\|504063_504543_-	hypothetical protein	NA	NA	NA	NA
WP_013456428.1\|504745_505849_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_013954784.1\|505889_506699_-	DUF45 domain-containing protein	NA	NA	NA	NA
WP_115305948.1\|506670_507357_-	NERD domain-containing protein	NA	NA	NA	NA
WP_013954786.1\|507372_510204_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.7e-276	52.6
WP_013954787.1\|510205_512215_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_013954788.1\|512334_513282_+	DNA cytosine methyltransferase	V5URQ5	Oenococcus_phage	2.4e-110	63.3
WP_078086163.1\|513679_514708_+\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3

DBSCAN-SWA_5

532319 : 596815

Moraxella_phage(28.57%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013954804.1\|532319_534659_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.6e-110	33.7
WP_172792936.1\|534868_537868_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.8e-135	44.0
WP_038582744.1\|537959_538685_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_115305952.1\|538873_539380_+	hypothetical protein	NA	NA	NA	NA
WP_013456419.1\|539484_540396_-	hypothetical protein	NA	NA	NA	NA
WP_013456542.1\|540530_540944_-	ATP synthase F1 subunit epsilon	NA	NA	NA	NA
WP_013456276.1\|540959_542423_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_013456581.1\|542475_543339_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_013954807.1\|543331_544918_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_013954808.1\|544910_545471_-	ATP synthase F1 subunit delta	NA	NA	NA	NA
WP_013954809.1\|545473_546046_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_013456149.1\|546050_546278_-	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_013456258.1\|546293_547112_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_013954812.1\|549684_550488_+	variable surface lipoprotein	NA	NA	NA	NA
WP_078086173.1\|550962_551991_+\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	1.1e-20	32.9
WP_014829937.1\|552242_552944_+	variable surface lipoprotein	NA	NA	NA	NA
WP_013954660.1\|553491_554880_+\|transposase	transposase	NA	NA	NA	NA
WP_014829938.1\|555185_555626_-	hypothetical protein	NA	NA	NA	NA
WP_013954815.1\|555618_557367_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.9e-101	36.9
WP_014829939.1\|557374_558370_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_013954817.1\|558486_559242_+	hypothetical protein	NA	NA	NA	NA
WP_075270961.1\|559422_560859_+\|transposase	transposase	NA	NA	NA	NA
WP_014829940.1\|560892_561204_+	hypothetical protein	NA	NA	NA	NA
WP_101456648.1\|561841_563275_-\|transposase	transposase	NA	NA	NA	NA
WP_078086175.1\|565005_566034_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	3.8e-21	33.8
WP_115305954.1\|566299_567061_-	hypothetical protein	NA	NA	NA	NA
WP_014829944.1\|567443_567707_-	hypothetical protein	NA	NA	NA	NA
WP_075270938.1\|567861_568413_-	variable surface lipoprotein	NA	NA	NA	NA
WP_115305956.1\|570371_571403_+	variable surface lipoprotein	NA	NA	NA	NA
WP_101456697.1\|571838_574067_-	hypothetical protein	NA	NA	NA	NA
WP_101456698.1\|574245_574425_-	hypothetical protein	NA	NA	NA	NA
WP_115305958.1\|575153_577142_+	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
WP_075271160.1\|577450_579175_+	hypothetical protein	NA	NA	NA	NA
WP_153700566.1\|579638_580304_+	variable surface lipoprotein	NA	NA	NA	NA
WP_013456133.1\|580490_581792_-	ATP-binding protein	NA	NA	NA	NA
WP_075270944.1\|582600_584559_+	peptidase S41	NA	NA	NA	NA
WP_101456648.1\|584635_586069_-\|transposase	transposase	NA	NA	NA	NA
WP_013954995.1\|586481_587726_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.1e-09	27.0
WP_101456648.1\|588045_589479_+\|transposase	transposase	NA	NA	NA	NA
WP_115305962.1\|590992_592018_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
WP_013456598.1\|592004_593111_-	DUF285 domain-containing protein	NA	NA	NA	NA
WP_013456494.1\|593553_593925_+	PTS transporter subunit EIIB	NA	NA	NA	NA
WP_115265558.1\|593989_595861_-	hypothetical protein	NA	NA	NA	NA
WP_115305964.1\|595885_596815_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.2e-51	36.6

DBSCAN-SWA_6

748071 : 799951

Faecalibacterium_phage(16.67%)

integrase,transposase

attL 795122:795148|attR 805995:806021

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115305996.1\|748071_749505_+\|transposase	transposase	NA	NA	NA	NA
WP_013954924.1\|754721_755714_+	histidine acid phosphatase	NA	NA	NA	NA
WP_013456029.1\|756399_757812_-\|transposase	IS1634-like element ISMbov2 family transposase	NA	NA	NA	NA
WP_115306041.1\|758271_759300_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	3.8e-21	33.8
WP_013954925.1\|760299_761343_-	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_013456526.1\|761473_761908_-	50S ribosomal protein L15	NA	NA	NA	NA
WP_013954926.1\|761926_762622_-	30S ribosomal protein S5	NA	NA	NA	NA
WP_013456329.1\|762624_762975_-	50S ribosomal protein L18	NA	NA	NA	NA
WP_013455947.1\|762999_763539_-	50S ribosomal protein L6	NA	NA	NA	NA
WP_013954927.1\|763548_763944_-	30S ribosomal protein S8	NA	NA	NA	NA
WP_013455972.1\|763945_764131_-	type Z 30S ribosomal protein S14	NA	NA	NA	NA
WP_075270967.1\|764133_764679_-	50S ribosomal protein L5	NA	NA	NA	NA
WP_004023949.1\|764681_765008_-	50S ribosomal protein L24	NA	NA	NA	NA
WP_004023950.1\|765020_765389_-	50S ribosomal protein L14	NA	NA	NA	NA
WP_013456343.1\|765392_765659_-	30S ribosomal protein S17	NA	NA	NA	NA
WP_013456156.1\|765658_765856_-	50S ribosomal protein L29	NA	NA	NA	NA
WP_013456225.1\|765855_766281_-	50S ribosomal protein L16	NA	NA	NA	NA
WP_013954928.1\|766280_766931_-	30S ribosomal protein S3	NA	NA	NA	NA
WP_013954929.1\|766933_767278_-	50S ribosomal protein L22	NA	NA	NA	NA
WP_013954930.1\|767280_767559_-	30S ribosomal protein S19	NA	NA	NA	NA
WP_013954931.1\|767558_768404_-	50S ribosomal protein L2	NA	NA	NA	NA
WP_013456175.1\|768473_768914_-	50S ribosomal protein L23	NA	NA	NA	NA
WP_038582884.1\|768913_769873_-	50S ribosomal protein L4	NA	NA	NA	NA
WP_013954934.1\|769893_770724_-	50S ribosomal protein L3	NA	NA	NA	NA
WP_013456535.1\|770777_771083_-	30S ribosomal protein S10	NA	NA	NA	NA
WP_013456552.1\|771699_771975_+	HU family DNA-binding protein	NA	NA	NA	NA
WP_013954936.1\|771998_772490_-	Holliday junction resolvase RecU	A0A0S2MVB5	Bacillus_phage	5.7e-15	33.5
WP_075271100.1\|772628_773621_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.3e-95	54.6
WP_013456391.1\|773706_774519_+	YmdB family metallophosphoesterase	NA	NA	NA	NA
WP_013954939.1\|774571_775657_-	M42 family metallopeptidase	NA	NA	NA	NA
WP_013954940.1\|775904_776615_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_013456038.1\|776651_776930_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_013455997.1\|776936_777236_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_013456093.1\|777428_777695_-	hypothetical protein	NA	NA	NA	NA
WP_013456268.1\|777788_778211_-	MscL family protein	NA	NA	NA	NA
WP_013954941.1\|778398_779424_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_013954942.1\|779407_780415_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_013954943.1\|780583_780796_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_075270971.1\|780818_781415_-	30S ribosomal protein S4	NA	NA	NA	NA
WP_013954945.1\|781712_783215_-	hypothetical protein	NA	NA	NA	NA
WP_013954946.1\|783253_786013_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.1e-110	33.2
WP_075270973.1\|786635_791348_+	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_013954691.1\|791412_792657_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	5.3e-09	27.0
WP_013954660.1\|792964_794353_-\|transposase	transposase	NA	NA	NA	NA
795122:795148	attL	NA	NA	NA	NA
WP_101456749.1\|795818_796238_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_075271129.1\|796360_797662_+	ATP-binding protein	NA	NA	NA	NA
WP_101456750.1\|798038_799061_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_115306043.1\|799075_799951_+\|integrase	tyrosine-type recombinase/integrase	A8ATD6	Listeria_phage	2.1e-76	48.5
805995:806021	attR	NA	NA	NA	NA

DBSCAN-SWA_7

945775 : 991753

Faecalibacterium_phage(27.27%)

tRNA,integrase,transposase

attL 974176:974195|attR 991780:991799

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013456477.1\|945775_946393_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_004024108.1\|946447_946663_-	hypothetical protein	NA	NA	NA	NA
WP_013456259.1\|946951_947563_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_013455927.1\|947859_948876_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.4e-37	33.6
WP_013456320.1\|949033_950707_-	ribonuclease J	NA	NA	NA	NA
WP_013455948.1\|951752_952478_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.4e-30	36.9
WP_013456583.1\|952470_953373_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_013456476.1\|953372_954020_-	dTMP kinase	Q2Z0N0	Pseudomonas_phage	2.2e-22	35.6
WP_013456384.1\|954034_954622_-	recombination protein RecR	NA	NA	NA	NA
WP_013456226.1\|954624_954915_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_115266483.1\|954931_956782_-	DNA polymerase III subunit gamma/tau	E7DN81	Pneumococcus_phage	1.5e-52	38.9
WP_115306045.1\|957020_958049_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
WP_013456015.1\|958566_959232_+	hypothetical protein	NA	NA	NA	NA
WP_013456011.1\|959361_960858_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_013456010.1\|960860_961760_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_013456212.1\|961948_962701_+	hypothetical protein	NA	NA	NA	NA
WP_013455980.1\|962898_963432_+	hypothetical protein	NA	NA	NA	NA
WP_013456446.1\|963418_964027_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_041309179.1\|964085_964991_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_013955056.1\|965029_965686_-	hypothetical protein	NA	NA	NA	NA
WP_013456231.1\|965830_966343_-	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	1.4e-11	34.4
WP_013456169.1\|966371_968177_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	2.8e-27	24.7
WP_013456107.1\|968155_968458_-	YlxR family protein	NA	NA	NA	NA
WP_101456727.1\|968441_970076_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_101456728.1\|970083_970530_-	ribosome assembly cofactor RimP	NA	NA	NA	NA
WP_013456273.1\|970669_971242_-	thymidine kinase	Q6GYZ9	Mycoplasma_phage	9.4e-70	70.1
WP_013456539.1\|971317_972688_-	peptidase M17	Q6GYZ8	Mycoplasma_phage	1.5e-153	73.1
WP_078086180.1\|973120_974149_+\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
974176:974195	attL	NA	NA	NA	NA
WP_115306015.1\|974359_975367_+	ECF transporter S component	NA	NA	NA	NA
WP_115306017.1\|977546_977738_+	hypothetical protein	NA	NA	NA	NA
WP_115306019.1\|977990_978593_+	variable surface lipoprotein	NA	NA	NA	NA
WP_174245886.1\|978768_979230_+	variable surface lipoprotein	NA	NA	NA	NA
WP_013456029.1\|979585_980998_-\|transposase	IS1634-like element ISMbov2 family transposase	NA	NA	NA	NA
WP_115303289.1\|987054_987417_+	hypothetical protein	NA	NA	NA	NA
WP_174244267.1\|988593_989142_+	hypothetical protein	NA	NA	NA	NA
WP_013456123.1\|989351_990101_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_115306045.1\|990724_991753_+\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
991780:991799	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP022588.1|WP_115306017.1|977546_977738_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP022588.1|WP_115306017.1|977546_977738_+|hypothetical-protein

977546_977738_+

63 aa aa

945775-991753

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP022588_3	Orphan	3.1\|987765\|18\|NZ_CP022588\|CRT	987765-987782	18	987717-987734	0
NZ_CP022588_3	Orphan	3.3\|987861\|18\|NZ_CP022588\|CRT	987861-987878	18	987717-987734	0
NZ_CP022588_3	Orphan	3.8\|988113\|18\|NZ_CP022588\|CRT	988113-988130	18	987717-987734	2
NZ_CP022588_3	Orphan	3.8\|988113\|18\|NZ_CP022588\|CRT	988113-988130	18	987079-987096	2

1. spacer 3.1|987765|18|NZ_CP022588|CRT matches to NZ_CP022588 position: 987717-987734, mismatch: 0

gctaacccagatcaaggt	CRISPR spacer
gctaacccagatcaaggt	Protospacer
******************

2. spacer 3.3|987861|18|NZ_CP022588|CRT matches to NZ_CP022588 position: 987717-987734, mismatch: 0

gctaacccagatcaaggt	CRISPR spacer
gctaacccagatcaaggt	Protospacer
******************

3. spacer 3.8|988113|18|NZ_CP022588|CRT matches to NZ_CP022588 position: 987717-987734, mismatch: 2

gctaacccaggacaaggt	CRISPR spacer
gctaacccagatcaaggt	Protospacer
**********. ******

4. spacer 3.8|988113|18|NZ_CP022588|CRT matches to NZ_CP022588 position: 987079-987096, mismatch: 2

gctaacccaggacaaggt	CRISPR spacer
gctaaaccaagacaaggt	Protospacer
***** ***.********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022588

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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