CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031333	Neisseria meningitidis strain M18727 chromosome, complete genome	9 crisprs	DEDDh,csa3,DinG,cas3,c2c4_V-U1	3	0	160	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031333_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_1

316502-316626

Orphan

Consensus_repeat	Method
CAGGAATCTATCGGAAAAAACAGAAACCCCCGCCGCCGTCATTCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031333_1

>merge|NZ_CP031333|1|316502-316626|CRISPRCasFinder
CAGGAATCTATCGGAAAAAACAGAAACCCCCGCCACCGTCATTCCCGCGAAAGCGGGAATCTAGACCCCAAACGCGGCAGGAATCTATCGGAAAAAACAGAAACCCCCGCCGCCGTCATTCCCGC

>NZ_CP031333|1|1|316502-316626|CRISPRCasFinder
CAGGAATCTATCGGAAAAAACAGAAACCCCCGCCACCGTCATTCCCGC	GAAAGCGGGAATCTAGACCCCAAACGCGG
CAGGAATCTATCGGAAAAAACAGAAACCCCCGCCGCCGTCATTCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_002234870.1\|314325_316299_+\|tail-fiber-protein	unknown	unknown	gnl\|CDD\|377845
NZ_CP031333.1\|WP_014581450.1\|306971_309110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002227342.1\|309109_310441_+\|phage-morphogeneis-protein	unknown	unknown	gnl\|CDD\|226681
NZ_CP031333.1\|WP_115435233.1\|322946_324260_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225459
NZ_CP031333.1\|WP_014580554.1\|305937_306171_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002222487.1\|318382_318592_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002219300.1\|318089_318386_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002222500.1\|310430_311576_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226814
NZ_CP031333.1\|WP_115435232.1\|312702_313758_+\|baseplate-J/gp47-family-protein	unknown	unknown	gnl\|CDD\|225836
NZ_CP031333.1\|WP_002217222.1\|317138_317426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225481
NZ_CP031333.1\|WP_019742805.1\|322144_322864_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|169556
NZ_CP031333.1\|WP_002217228.1\|312341_312689_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226816
NZ_CP031333.1\|WP_002222503.1\|306214_306817_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002234871.1\|317505_318111_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002217218.1\|320286_320934_-\|DUF799-domain-containing-protein	unknown	unknown	gnl\|CDD\|226815
NZ_CP031333.1\|WP_002217230.1\|311572_312241_+\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|226819
NZ_CP031333.1\|WP_002234869.1\|313754_314315_+\|YmfQ-family-protein	unknown	unknown	gnl\|CDD\|226301
NZ_CP031333.1\|WP_002213586.1\|316864_317167_-\|BrnA-antitoxin-family-protein	unknown	unknown	gnl\|CDD\|226045
NZ_CP031333.1\|WP_002239761.1\|321308_321980_-\|CsgG/HfaB-family-protein	unknown	unknown	gnl\|CDD\|224379
NZ_CP031333.1\|WP_002219297.1\|320930_321299_-\|DUF4810-domain-containing-protein	unknown	unknown	gnl\|CDD\|226710

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_002234870.1\|314325_316299_+\|tail-fiber-protein	gnl\|CDD\|377845	pfam07484, Collar, Phage Tail Collar Domain. This region is occasionally found in conjunction with pfam03335. Most of the family appear to be phage tail proteins; however some appear to be involved in other processes. For instance a member from Rhizobium leguminosarum may be involved in plant-microbe interactions. A related protein MrpB is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologs but the intervening sequence is not. Much of the function of phage T4 appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the 'collar'. The domain may bind SO4, however the residues accredited with this vary between the PDB file and the Swiss-Prot entry. The long unconserved region maybe due to domain swapping in and out of a loop or reflective of rapid evolution.	1.60045e-07
NZ_CP031333.1\|WP_002217218.1\|320286_320934_-\|DUF799-domain-containing-protein	gnl\|CDD\|226815	COG4380, COG4380, Uncharacterized protein conserved in bacteria [Function unknown].	2.86379e-125
NZ_CP031333.1\|WP_002227342.1\|309109_310441_+\|phage-morphogeneis-protein	gnl\|CDD\|226681	COG4228, COG4228, Mu-like prophage DNA circulation protein [General function prediction only].	0
NZ_CP031333.1\|WP_002217228.1\|312341_312689_+\|hypothetical-protein	gnl\|CDD\|226816	COG4381, COG4381, Mu-like prophage protein gp46 [Function unknown].	2.68983e-49
NZ_CP031333.1\|WP_002222500.1\|310430_311576_+\|hypothetical-protein	gnl\|CDD\|226814	COG4379, COG4379, Mu-like prophage tail protein gpP [General function prediction only].	0
NZ_CP031333.1\|WP_115435232.1\|312702_313758_+\|baseplate-J/gp47-family-protein	gnl\|CDD\|225836	COG3299, XkdT, Uncharacterized homolog of phage Mu protein gp47 [Function unknown].	4.43155e-120
NZ_CP031333.1\|WP_002217222.1\|317138_317426_-\|hypothetical-protein	gnl\|CDD\|225481	COG2929, COG2929, Uncharacterized protein conserved in bacteria [Function unknown].	4.31378e-35
NZ_CP031333.1\|WP_019742805.1\|322144_322864_-\|SDR-family-oxidoreductase	gnl\|CDD\|169556	PRK08703, PRK08703, SDR family oxidoreductase.	5.61111e-162
NZ_CP031333.1\|WP_115435233.1\|322946_324260_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	0
NZ_CP031333.1\|WP_002217230.1\|311572_312241_+\|phage-baseplate-assembly-protein-V	gnl\|CDD\|226819	COG4384, COG4384, Mu-like prophage protein gp45 [Function unknown].	1.64484e-90
NZ_CP031333.1\|WP_002234869.1\|313754_314315_+\|YmfQ-family-protein	gnl\|CDD\|226301	COG3778, COG3778, Uncharacterized protein conserved in bacteria [Function unknown].	9.0831e-87
NZ_CP031333.1\|WP_002213586.1\|316864_317167_-\|BrnA-antitoxin-family-protein	gnl\|CDD\|226045	COG3514, COG3514, Uncharacterized protein conserved in bacteria [Function unknown].	6.69559e-25
NZ_CP031333.1\|WP_002239761.1\|321308_321980_-\|CsgG/HfaB-family-protein	gnl\|CDD\|224379	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane].	1.69136e-84
NZ_CP031333.1\|WP_002219297.1\|320930_321299_-\|DUF4810-domain-containing-protein	gnl\|CDD\|226710	COG4259, COG4259, Uncharacterized protein conserved in bacteria [Function unknown].	4.81314e-60

>NZ_CP031333.1|WP_002234870.1|314325_316299_+|tail-fiber-protein
MHPIETPDKTFHDGDGVSELGTILPAWWLNQVQSELLAVLTAAGIQPDKSQPNQLLAALNRLAVVTTGDQTITGQKTFTAQTQFQSGIHLSANQTNWNGGHKAYIGAAADNAHIVFGDNTLRLHGANNRISYNNHDIFHKANKPRFAEDIKGKPNTLSGYGIGNFKVETFRGDLNTLKTDGIYSLPTAVGSSNLPVENTACHIQVIAGTQPGWCRQLGYPAYTSDVYERHQTSSANDNWSAWKKLNSDGIPAGAIVSFPKAVQNPAGYLKANGTTFAQNTFPDLYRALGNSNRLPDLSRTDIGITAWFPSDQIPTGWLAFDDIRTRVTETAYPELYRLLTGKYGSIQNVPQAEDRFIRNAGNSLAVGTKQEDEIKRHVHKVFSHWTNHTDTAAVGYEDHNERQRSALVSTWTDGDLNDNGFLTPRSDSKMATGGDENRPKALVLKLCIKAADTLGEAVFWIKSHGETINAGALDAGTLAQGLQDKADRDHTHTAAQIQGLDEKISTAVAAQFTRQTIGGVDIVRFPDGTMIQTGSYRFTRSGGPIENEVVFPVAFADGNVKCFVSERHSGRVTGDRRQHNWLFIRAKNHAAAIITNWYEGSCDWMAIGKAASGNAASSPIGPEIPETNEEPQRESGRTSTGPRNRRRRDGLLEALQD
>NZ_CP031333.1|WP_002234869.1|313754_314315_+|YmfQ-family-protein
MSYQDILRGLLPPVSYARNAPRVRAQAEIDGAALDAVAESAQSVADAVDPSSAGQMLADWERVLGLDGTGKNRQRRVLAVMAKLNETGGLSIPYFVRLAEAAGYQIQIDEPQPFRAGVNRAGDRLAPQEIMWVWHVNVRGGNNRITRFRAGISAAGDRLTDYSDAVIESLFNRLKPAHTAIRFTYR
>NZ_CP031333.1|WP_115435232.1|312702_313758_+|baseplate-J/gp47-family-protein
MFETPTFEQIRERILRDTKSLWPDADISPDSDHYVHASRLASCAEGQYAHQSWIVRQIFPDTADREYLERHASMRGLSRRNPTTASGTLTVSGIAQSMLSDDLQVRIGQRFYRTTARAVIGSGGTAEIPAIADELGAAANVRDGEAQLMAAPAGVSTECRLTVQGGTDRESDASLLARLLEIIRRPPAGGNRYDYKNWALSVDGVTSAYVYPLRRGLGTVDIAITSADGVPSEETVRRVQAYIDEMRPVTAKNALVLKPTVTAVPVTVQVKLDGIDLDDAKRRIRTALKEYFDTLIPGDGLTVSQIEAAISNVDGVIDRRLTAPTANRAADTVNRIEWFKAGAINVTEMPS
>NZ_CP031333.1|WP_002217228.1|312341_312689_+|hypothetical-protein
MDKELNPGTGDYTGRTVDTLQNAVYIRLMTPLGSWWADKTLGSLLHLLQREKDLQRVSLLAEQYADEALQPIVKSGRADKITVRAEQPHDGRLILHIRVDTAAGGFDYRHEVPVI
>NZ_CP031333.1|WP_002217230.1|311572_312241_+|phage-baseplate-assembly-protein-V
MSLSKLAKKTAQTAKNIGETLRAAFRGKITLVVSSEPIQRVQLSGLADETLQDLEHLQEYGFASHPPDGSEAVVIPLGGNTSHGVIVCSQHGSYRIKNLKPGETAIFNHEGAKIVIKQGKIIEADCDVYRVNCKQYEVNAATDAKFNAPLVETSAVLTAQGQINGNGGMAVEGGDGATFSGDVNQTGGSFNTDGDVVAGNISLRQHPHTDSIGGKTLPAEPA
>NZ_CP031333.1|WP_002222500.1|310430_311576_+|hypothetical-protein
MQNNSYGYAVSVRVGGKEHRHWERYDIDSDFLIPADSFDFVIGRLGPEAAIPDLSGESCEVVIDGQIVMTGIIGSQRHGKSKGGRELSLSGRDLAGFLVDCSAPQLNVKGMTVLDAAKKLAAPWPQIKAVVLKAENNPALDKIDIEPGETVWQALTHIANSVGLHPWLEPDGTLVVGGADYSSPPVATLCWSRTDSRRNIERMDIEWDTDNRFSEVTFLAQSHGRSGDSAKHDLKWVYKDPTMTLHRPKTVVVSDADNLAALQKQAKKQLADWRLEGLTLTITVGGHKTRDGVLWQPGQRVHVIDDEHGIDAVFFLMGRRFMLSRMDGTQTELRLKEDGIWTPDAYPKKAEAVRKRKGKRKGVSHKGKKGGKKQAETAVFE
>NZ_CP031333.1|WP_002227342.1|309109_310441_+|phage-morphogeneis-protein
MSGWHTLLQDASYKGVGFDIEVVDESNGKALAEHARPFVQGIDLEDMGTTGRQVQINAVFWGKGYAGRLKKLLDALEQPGGGVLVHPVWGRMHNMIAASWSYRHEADYVDYAGIDITFREAAEAQEIFVFENAFLVELEALIADIDTYREAAIGFVDAVLAVDAGVSALWGSALGIWSAASGTFGAVRRLFDLDKIAFPDRGGYSAAAFKNGSAKLFADISVMVDTGIRREAGLADNAMHHAGWSPRQRFDGAAAVADRAAAIPDNLLTGRFSDGLQNRLNRLTAKQVQPVAQAVRLLSTSSLLSVATALIEAHGEEMTAPDLIEVNRAMRRRMQAEIAALRAVQTAAAESGGLTANAVYTEAYQTAESLRAAAGRLNALVAAVINQKPPLIVRQAPIDGTIHQIAHEFYGDIARAAELVRLNPHIHHPAFIKRGTLVNSYAK
>NZ_CP031333.1|WP_014581450.1|306971_309110_+|hypothetical-protein
MANGNMKLSLVLTARDDGARRLLADTQRQLDRTAKSRAQLERQSHTYALTGIRSEKQIQREIMLTQAAFNRLARSGKASQNDLARAAVATRNRIRELNAELKQGTGFADKMGKIGRFGAAAVAGGAAAYTVLKPAMDNRKQLDENINRVSRQAFIEDNSKSAAWIATEGAQQIKDLALELVEKNGGTHDKALDLISGMMTTSLNFAQTKNEAQAAYAFALASEGSGEDTAKLIKTLKDGGMSGKDLQLGLEHVLQSGLDGTFEVRDMVRELPSLLPAAQQAGMNGVGGLDYLLSLLQSAANKSGSPAEAATNVQNLLSKTLSPDTIGRLKKMANPNDPKKGVDWIGSVVQGKQNGENAVQVLSRLADAMLVKDKQYQDYKKRAAAGDKTAAEQANMLKGALLAQLLPDLQAKQGLLAATDMTQIREYMASLAGVTLDNGKIAKNNEARMLSAAAQQEQQESLAMLRESLTGTLVDMETSFKKLAAEYPNATLALQALTTAATAASAAMLLTAGGGKGAGFLKDVGSKALGWGKASAGGVAAGATAAGGKLLSWGKSAGSGLMNNPALVKRAGLLGMLLYSESLGDGTLTKGLRGTKTTPEMINRLKNNGIRFEPAPKREQARGGVPQYLAAPSAQPTDKMLSPLFSTQTAAYQAALAQDTAAVTTGLAQVQSAMASASQTINTNVSLNIDGRVIANEVSRYQVAMFGRGAGQ
>NZ_CP031333.1|WP_002222503.1|306214_306817_-|hypothetical-protein
MNMKKLISAICVSIVLSACNQQSKTAQAEEPVQSIQAADCTAPMDITVEQYLINLEQAFKTQNVSTKIHNKNIVKTDCGYDLTLVMDFGAIALKLDEQQKIRAISVGYILKTDGEKGQNLVNNAINGLHSIQAVLSLTTTDKLGESEAGKQLFTALTEVVKESNQTGATAQKDVPADGILYSVVFEKETNTIAIIGRKQP
>NZ_CP031333.1|WP_014580554.1|305937_306171_+|hypothetical-protein
MRRRRRSSKTQLPDGTQKLPSGGHPDGKAGIGADAVRDMCHAELSAWFEDILSSLGIKTPKEEGVIVSKRLRKPEGK
>NZ_CP031333.1|WP_002213586.1|316864_317167_-|BrnA-antitoxin-family-protein
MQRQSLTNADGEVRELAAEDFALARPIAEALPEDLAQVLFSHQKQLEEKGVMQKRNTGKTPKQLVTIRLSADVVEKFRAGGKGWQTRINEVLRQYVAQLK
>NZ_CP031333.1|WP_002217222.1|317138_317426_-|hypothetical-protein
MKIEFDSEKNQRNIEERNLPFESVGQIRWTTAVIVPDVCFDYPEPRYVAAAYLGDTQRLHIVCFTPIKDGIRVISFRKANKREVKKYATSILNKR
>NZ_CP031333.1|WP_002234871.1|317505_318111_+|hypothetical-protein
MTIYFKNGFYDDTLGSIPEGAVAVRAEEYAALLAGQAQGGQIAADSDGRPVLTPPRPSEYHEWDGKKWEIGEAAAAARFAEQKTATAFRLAAKADELKNSLLAGYPQVEIDSFYRQEKEALARQADNNAPTPMLAQIAAARGVELDVLIEKVIEKSARLAVAAGAIIGKRQQLEDKLNAIETAPGLDALEKEIEEWTLNIG
>NZ_CP031333.1|WP_002219300.1|318089_318386_+|hypothetical-protein
MDAKHRLKKYVYHLLVAIDQLFNALTGGAADETLSSRTYRGARLAQKPKTRWKVLYTLINGVFFDRHHCRQAYISELKGRQHDARFNQSRAAGEKGTR
>NZ_CP031333.1|WP_002222487.1|318382_318592_+|hypothetical-protein
MNYFGMVEFLRLMAMVRPPFVFFSGTRSELPTYLDLVAELRLTGWERFAGSQTLTVSSTSTAIQATTTT
>NZ_CP031333.1|WP_002217218.1|320286_320934_-|DUF799-domain-containing-protein
MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPLNESPDVNGTWGVLASTAAPLSEAGYYVFPAAVVEETFKQNGLTNAADIHAVRPEKLHQIFGNDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSNSGLLGALVSAVVNQIANSLTDRGYQVSKTAAYNLLSPYSHNGILKGPRFVEEQPK
>NZ_CP031333.1|WP_002219297.1|320930_321299_-|DUF4810-domain-containing-protein
MNPKTLSRLSLCAAVLALTACGGNGQKSLYYYGGYPDTVYEGLKNDDTSLGKQTEKMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRLFPESGVFMDFLMKTGKGGKR
>NZ_CP031333.1|WP_002239761.1|321308_321980_-|CsgG/HfaB-family-protein
MKTVSTAVVLAAAAVSLPGCATESSRSLEVAKVASYNTQYHGVRTPISVGTFDNRSSFQKGIFSDGEDRLGSQAKTILVTHLQQTNRFNVLNRTNLIALKQESGISGKAHNLKGADYVVTGDVTEFGRRDVGDHQLFGILGRGKSQIAYAKVALNIVNVNTSEIVYSAQGAGEYALSNREIIGFGGTSGYDATLNGKVLDLAIREAVNSLVQAVDNGAWQPNR
>NZ_CP031333.1|WP_019742805.1|322144_322864_-|SDR-family-oxidoreductase
MATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFNHFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEAKSERKSYGDVLPAFVWWASAESKGRSGEIVYL
>NZ_CP031333.1|WP_115435233.1|322946_324260_-|NAD(P)/FAD-dependent-oxidoreductase
MMNTPHPRPKIAVIGAGWAGLSAAVTLTRHADVTLFEAGRQAGGRARTLAGNTDGFGFLDNGQHILLGAYRGVLRLMKTIGSDPRAAFLRVPLHWHMHGGLQFRALPLPAPLHILGGVLLARRVPSAFKAKLLADMSDLQKSARLGQPDTTVAQWLKQRNVPRAAVMQFWQPLVWGALNTPLETASLRVLCNVLSDGVLTKKSGSDYLLPKQDLGAIVAEPALAELQRLGADIRLETRVCRLNPLPDGKVLVNGEAFDAAVPATAPYHAAALLPEGTPEHVQTAYQNLRYHAITTVYLRYAEPVRLPAPLTGLADGTVQWLLCRGRLGLPENEVSAVISVSDRVGAFTNRAWADKVHADLKRILPHLGEPEAVRVITEKRATTAADAPPPDLSWLHRHRIFPAGDYLHPDYPATLEAAVQSGFASAEACLQSLSDAV

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Crispr_ID: NZ_CP031333_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_2

1215405-1215583

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCTTTCGCGGGAATGACG	CRISPRCasFinder

2 spacers

DinG

The CRISPR arrays of NZ_CP031333_2

>merge|NZ_CP031333|2|1215405-1215583|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGGCATAGGGGTTTCTGTTTTCCCGATAAATTCCTGTTGCTTTTCGTTTCTAGATTCCCGCTTTCGCAGGAATGACGATGGAAAGATTGTTGTTGCTTCGGATAAATTTCTGCAGTTTTAAATAACCGGATTCCCGCCTGCTCGGGAATGACG

>NZ_CP031333|2|2|1215405-1215583|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACG	GCATAGGGGTTTCTGTTTTCCCGATAAATTCCTGTTGCTTTTCGTTT
CTAGATTCCCGCTTTCGCAGGAATGACG	ATGGAAAGATTGTTGTTGCTTCGGATAAATTTCTGCAGTTTTAAATAA
CCGGATTCCCGCCTGCTCGGGAATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_002226962.1\|1204977_1205169_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002215698.1\|1202707_1203619_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP031333.1\|WP_014575140.1\|1220589_1221288_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP031333.1\|WP_014581319.1\|1212713_1214594_+\|VacB/RNase-II-family-3'-5'-exoribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP031333.1\|WP_014581314.1\|1224182_1224965_+\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NZ_CP031333.1\|WP_002221942.1\|1205301_1207452_+\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236966
NZ_CP031333.1\|WP_002216361.1\|1202201_1202600_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP031333.1\|WP_002233479.1\|1210330_1211701_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP031333.1\|WP_002260368.1\|1221314_1221506_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_162819260.1\|1215821_1216946_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
NZ_CP031333.1\|WP_014581315.1\|1223175_1224132_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223506
NZ_CP031333.1\|WP_014581320.1\|1203608_1204910_+\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
NZ_CP031333.1\|WP_002221929.1\|1225029_1227330_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_CP031333.1\|WP_002254130.1\|1217050_1219459_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|224369
NZ_CP031333.1\|WP_002215682.1\|1211772_1212405_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP031333.1\|WP_002226961.1\|1208382_1210251_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP031333.1\|WP_002221941.1\|1207487_1208102_+\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|225526
NZ_CP031333.1\|WP_014581316.1\|1221505_1223044_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
NZ_CP031333.1\|WP_002221589.1\|1227471_1227897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002239466.1\|1219528_1220533_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|225719

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_002215698.1\|1202707_1203619_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.60033e-69
NZ_CP031333.1\|WP_014575140.1\|1220589_1221288_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	7.04425e-47
NZ_CP031333.1\|WP_014581319.1\|1212713_1214594_+\|VacB/RNase-II-family-3'-5'-exoribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	1.13953e-81
NZ_CP031333.1\|WP_014581314.1\|1224182_1224965_+\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	1.63084e-139
NZ_CP031333.1\|WP_002221942.1\|1205301_1207452_+\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|236966	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.	0
NZ_CP031333.1\|WP_002216361.1\|1202201_1202600_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.7727e-20
NZ_CP031333.1\|WP_002233479.1\|1210330_1211701_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP031333.1\|WP_162819260.1\|1215821_1216946_-\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	2.86123e-24
NZ_CP031333.1\|WP_014581315.1\|1223175_1224132_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	6.89644e-128
NZ_CP031333.1\|WP_014581320.1\|1203608_1204910_+\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	9.07251e-140
NZ_CP031333.1\|WP_002221929.1\|1225029_1227330_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP031333.1\|WP_002254130.1\|1217050_1219459_-\|LPS-assembly-protein-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	0
NZ_CP031333.1\|WP_002215682.1\|1211772_1212405_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	9.34183e-62
NZ_CP031333.1\|WP_002226961.1\|1208382_1210251_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.8207e-79
NZ_CP031333.1\|WP_002221941.1\|1207487_1208102_+\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|225526	COG2979, COG2979, Uncharacterized protein conserved in bacteria [Function unknown].	3.70832e-71
NZ_CP031333.1\|WP_014581316.1\|1221505_1223044_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	3.26989e-180
NZ_CP031333.1\|WP_002239466.1\|1219528_1220533_+\|phosphotransferase	gnl\|CDD\|225719	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only].	6.24483e-149

>NZ_CP031333.1|WP_014581319.1|1212713_1214594_+|VacB/RNase-II-family-3'-5'-exoribonuclease
MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFAEFDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAEAIAEEYYGHAPTKTELAATLIALYAAPVYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIAADLKTILHAPDKQSLTYKAFTKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFPKGTGFPDLALPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLGNGMKRVGIHIAAPSLAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAYRPAVSIYFDVDSKFNVGEPTCKIEAVNIAENLRIQTIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFAITLQKARGKYEPDRAPQYDYSIELDEEGKVSVVRRERGSPIDTLVSEMMILANSTWAQMLHDNDLPGLFRVQPTGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDDTAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELTATILKEDLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGNAV
>NZ_CP031333.1|WP_002215682.1|1211772_1212405_-|TIGR00730-family-Rossman-fold-protein
MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHADYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPYQDIALRFSRFAERKAVFFRYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPIVLVGKAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSEHGLQTA
>NZ_CP031333.1|WP_002233479.1|1210330_1211701_-|adenylosuccinate-lyase
MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLKALAAEPKIAEVPPFSAETLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKKRFAEVPEVAAVSEFIHFACTSEDINNLSHALMLQEAREAVLLPKLAEIIEKLTAMAHDLAAVPMMSRTHGQPATPTTLGKETANVVYRLQRQFKNLQVQEFLGKINGAVGNYNAHMVAYPDVDWETHCRNFVEISLGLTFNPYTIQIEPHDYMAEFFQTLSRINTILIDFNRDVWGYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLSEKLPISRWQRDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTVMRRYGVANPYEKLKDLTRGKGGITPEVLKGFIGSLEIPVEAKAKLLELTPALYVGKAEALAKRI
>NZ_CP031333.1|WP_002226961.1|1208382_1210251_-|acyltransferase
MQAVRYRPEIDGLRAVAVLSVIIFHLNNRWLPGGFLGVDIFFVISGFLITGIILSEIQNGSFSFRDFYTRRIKRIYPAFIAAVSLASVIASQIFLYEDFNQMRKTVELSAVFLSNIYLGFQQGYFDLSADENPVLHIWSLAVEEQYYLLYPLLLIFCCKKTKSLRVLRNISIILFLILTATSFLPSGFYTDILNQPNTYYLSTLRFPELLAGSLLAVYGQTQNGRRQTANGKRQLLSSLCFGALLACLFVIDKHNPFIPGMTLLLPCLLTALLIRSMQYGTLPTRILSASPIVFVGKISYSLYLYHWIFIAFAHYITGDKQLGLPAVSAVAALTAGFSLLSYYLIEQPLRKRKMTFKKAFFCLYLAPSLILVGYNLYARGILKQEHLRPLPGAPLAAENHFPETVLTLGDSHAGHLRGFLDYVGSREGWKAKILSLDSECLVWVDEKLADNPLCRKYRDEVEKAEAVFIAQFYDLRMGGQPVPRFEAQSFLIPGFQARFRETVKRIAAVKPVYVFANNTSISRSPLREEKLKRFAANQYLRPIQAMGDIGKSNQAVFDLVKDIPNVHWVDAQKYLPKNTVEIHGCYLYGDQDHLTYFGSYYMGREFHKHERLLKSSRDGALQ
>NZ_CP031333.1|WP_002221941.1|1207487_1208102_+|tellurite-resistance-TerB-family-protein
MNFTRLLNQVLSTVQKKGNTFSDSPLNSFGGGALVAGVASMLLNGKNRKTITKIGSTAALGYLAYRGYQMWQQNKGRATVTQSDFQPAGETEETYSRTVLRTMIAAAASDGMIDEAERRTIEQESGTDPETAAWLAAEYRLPASIGDIAAAVGNDEALAAEAYLAARLVCADLSRKETVFLARLSQALKLDDNLVESLERQLGF
>NZ_CP031333.1|WP_002221942.1|1205301_1207452_+|ATP-dependent-DNA-helicase-DinG
MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRTLTREEGGDPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELSFALAKGRGRYLCPYKLYQLTQNNAQQNLTGFETPEVLWDSKPKPEELKLLRDIADEFSARRFNGDRDTWPEKIDDAIWLKVTNDRHGCLKTACPNRPECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALSRFAAEHSWNIAVWTLEKLPQMTGKIAALTDKAELANLADETAASLLDSLHEWQFHLAEEPSLSLGVSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAIAARSLLKHVIGLNDALSAARREKEQDSALLDRLTGEFGLFIARIEQISAVWDLLSTVPLEGEEPLAKWITRRADDKNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLILRQTGLQWLPETTTLALKSPFDFEKQGELYIPPIYASPKDPEAHTAAIIEWLPKLISPTEAIGTLVLFSSRKQMQDVALRLPGDYLPLLLVQGELPKAVLLQKHHRAIEEGKASIIFGLDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQAVGRLIRTEQDYGRVTILDNRIKTQRYGQQLLAGLPPFKRIG
>NZ_CP031333.1|WP_002226962.1|1204977_1205169_-|hypothetical-protein
MLLCIADMLLYRLLGGAEIECGRCPVPPMTDWQHFLLAMGTVSAWVAVIWAYLIIESEKNGRY
>NZ_CP031333.1|WP_014581320.1|1203608_1204910_+|deoxyribodipyrimidine-photo-lyase
MPSETARPLYADTCAAHTLVWFRQNLRIRDNAALCAAVAEGLPIIGIWIDDAETDNPRRAAFYRQSAAELAQGLAGRGIPLYTAASPAELVRLAVRLNIRAVIADESHTFADKLADNALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQADSYSVLKDFPSRKHTSLMGAYLSAGCISPRLLARESLERRLNAWADNIIRRDFFLQLALQHTDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVDTHGYPAYPVAGIP
>NZ_CP031333.1|WP_002215698.1|1202707_1203619_+|LysR-family-transcriptional-regulator
MDTLFSLKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEKIASRKGCRNAV
>NZ_CP031333.1|WP_002216361.1|1202201_1202600_-|DoxX-family-protein
MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSPGGLLLLAGILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGESAVLFCFVFLYIAAAGGGAWSLDRLFFKRKA
>NZ_CP031333.1|WP_162819260.1|1215821_1216946_-|peptidylprolyl-isomerase
MKIKALMIAAALLAAADVHAAPQKAKTASAKAAKAAKAAKAAKAAKVAKVAKVAKVAKVAKVAKVAKVAKVAKVAKVAATAQKEAAPAQQQGGIRFSDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQFGWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDIR
>NZ_CP031333.1|WP_002254130.1|1217050_1219459_-|LPS-assembly-protein-LptD
MARLFSLKPLVLALGLCFGTHCAAADAVAAEETDNPTAGGSVRSVSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVRGSGEASIPEDYTRIVADKVEGQSQVQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQQTGEAHNVRMETEHGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASVEADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVPSLSAGSDGVSLSVPYYFNLAPNLDATFAPSVIGERGAVFDGQVRYLRPDYAGQSDLTWLPHDKKSGRNNRYQAKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGNKEIAGNVNLNRRVWLDYGGRAAGGSLNAGLSVLKYQTLANQSGYKDKPYALMPRLSADWRKNTGRAQIGVSAQFTRFSHDSRQDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVSRTLPIVNIDSGATFERNTRMFGGGVLQTLEPRLFYNYIPAKSQNDLPNFDSSESSFGYGQLFRENLYYGNDRINTANSLSAAVQSRILDGATGEERFRAGIGQKFYFKDDAVMLDGSVGKKPRNRSDWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKIYLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEVLAGAEYKSSCGCWGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGRNKRP
>NZ_CP031333.1|WP_002239466.1|1219528_1220533_+|phosphotransferase
MQRQIKLKNWLQTVYPERDFDLTFAAADADFRRYFRATFSDGSSVVCMDAPPDKMSVAPYLKVQKLFDMVNVPQVLHADTDLGFVVLNDFGNTTFLTAMLQEQGETAHKALLLEAIGELVELQKASREGVLPEYDRETMLREINLFPEWFVAKELGRELTFKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYDLVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVAGIFARLYYRDGKDKYRPEIPRFLNYLRRVSRRYAELAPLYALLVELVGDEELETGFTF
>NZ_CP031333.1|WP_014575140.1|1220589_1221288_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKNVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ
>NZ_CP031333.1|WP_002260368.1|1221314_1221506_+|hypothetical-protein
MLEINRNPAILLHFRVLIQFAAGKGSFRFGKPLQTASNPMPSEAVSVVQYAPLPQTGTTVEEQ
>NZ_CP031333.1|WP_014581316.1|1221505_1223044_+|murein-biosynthesis-integral-membrane-protein-MurJ
MNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGAGMATDAFFVAFKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEATEAFIRHVAGMLSFVLVIVTALGILAAPWVIYVSAPGFAKDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFSIPAFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLPKLNFKDAAVNRVMKQMAPAILGVSVAQVSLVINTIFASYLQSGSVSWMYYADRMMELPSGVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLVATLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLAPGFYARQNIKTPVKIAIFTLICTQLMNLAFIGPLKHVGLSLAIGLGACINAGLLFYLLRRHGIYQPGKGWAAFLAKMLLSLAVMGGGLWAAQACLPFEWVRAGGMRKAGQLCILIAVGGGLYFASLAALGFRPRHFKRVEN
>NZ_CP031333.1|WP_014581315.1|1223175_1224132_+|alpha/beta-fold-hydrolase
MILTPPDTPFFLRNGNADTIAAKFLQRPAPTYRRELLPDSTGKTKVAYDFSDGISPDAPLVVLFHGLEGSSRSHYAVELMLAVRSRGWHGAVVHFRSCGGIANTAPVFYHLGDTAEIAFTLDTLAARYREIYAVGVSLGGNALAKYLGERGENALPQAAAAVSAPVDAEAAGRRFDSGITRLLYTRYFLRTLIPKARSLHGFQTAFAAGCKTLGEFDDRFTAPLHGFADRHDYYRQTSCKPLLKHVAKPLLLLNAANDPFLPPEALPTPDEVSEAVTLFQPAHGGHAGFVGSTGGRLHLQWLPQTVLSYFDSFRTNRR
>NZ_CP031333.1|WP_014581314.1|1224182_1224965_+|indole-3-glycerol-phosphate-synthase-TrpC
MTDILNKILTAKAQEVAAQKAAVNAEHIRALAAEAAPVRSFIGSIRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGVACLSVLTDEPYFQGSPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVAHELGMTVLLELHDETELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVVTESGITGKADVEFMQSRGVHTFLIGETFMRADDIEAEVGKLF
>NZ_CP031333.1|WP_002221929.1|1225029_1227330_+|DNA-helicase-RecQ
MHRPTAKQILHEVFGYPEFRGRQEAVINTLAGGGSLTVLMPTGGGKSLCYQIPALMREGVAVVVSPLIALMNDQVANLHAAGIEAAAVNSGTSADEAREIADRLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGMLAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFVSSFDRPNIYYQVIEKNNGKKQLLDFIRKEMTGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRFTHEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCYGLNDWVLLRERIAEGNSDEVQKQIEMQKLDAMLAVCETAACRRVLLLKHFGEASEPCGHCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNILRGKSDDWIRGNRHEQLSTFGIGTELSDKEWRSVIRQCISLGYLTVNITRYQALQLTEAAKKVLKGETEVMLRPLKRDKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMPQDLNGLHDIYGLGEAKIDRFGHGILEVCRNAAGFSRDAVIRPQTEREQQLRQKLEAWRYEQARAENCALHAVLSDESLADMLADTPETETDLEGVYGLGSVRAAKYGRDILAVCRPFSDGIDETAKRKRRLMRALIQWCGETAKHEQSEPYRILSKAALRAIAAKQPEGLAELAAVYGVGEEKAARYGAAVLAVLERNAV
>NZ_CP031333.1|WP_002221589.1|1227471_1227897_-|hypothetical-protein
MYWERGLHMYKASAVVPTGYVRVGNTAPLVGEDTQRYASFWGDGYDVYRQLRWQQIPEKQRKAFKKAAKSKKTVMFAGREYGISKQNLSDVWDDFEDAMELKAFPCLSSLFLTKWHKNLYDSGLTKTSTALPRLSSKRTIL

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Crispr_ID: NZ_CP031333_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_3

1305662-1305760

Orphan

I-E

Consensus_repeat	Method
GGATTCCCGCCTGCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031333_3

>merge|NZ_CP031333|3|1305662-1305760|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACGATTTGGAAATTACCCGAAACCCAAAAACAACTGAAACCGAACAGACCGGATTCCCGCCTGCGCGGAAATGACG

>NZ_CP031333|3|3|1305662-1305760|CRISPRCasFinder
GGATTCCCGCCTGCGCGGGAATGACG	ATTTGGAAATTACCCGAAACCCAAAAACAACTGAAACCGAACAGACC
GGATTCCCGCCTGCGCGGAAATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_014581297.1\|1301897_1304657_+\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|236766
NZ_CP031333.1\|WP_002228897.1\|1297457_1298267_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP031333.1\|WP_072104497.1\|1299191_1300364_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|223834
NZ_CP031333.1\|WP_012222102.1\|1298263_1298509_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002226919.1\|1313037_1313661_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP031333.1\|WP_019273923.1\|1308676_1310572_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP031333.1\|WP_002226918.1\|1314651_1315779_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP031333.1\|WP_002215509.1\|1306924_1308352_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_CP031333.1\|WP_015815957.1\|1298938_1299184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_014581298.1\|1300411_1301404_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182909
NZ_CP031333.1\|WP_025461156.1\|1301481_1301775_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002218608.1\|1297070_1297448_+\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NZ_CP031333.1\|WP_002221872.1\|1305775_1306765_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP031333.1\|WP_021437269.1\|1296417_1296915_-\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NZ_CP031333.1\|WP_014575111.1\|1311236_1311482_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002243953.1\|1298526_1298937_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002218599.1\|1310639_1311224_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_CP031333.1\|WP_002218592.1\|1316572_1317319_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|376506
NZ_CP031333.1\|WP_002221868.1\|1312165_1312939_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_CP031333.1\|WP_002216270.1\|1315959_1316517_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_014581297.1\|1301897_1304657_+\|Rne/Rng-family-ribonuclease	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0
NZ_CP031333.1\|WP_002228897.1\|1297457_1298267_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	8.50742e-132
NZ_CP031333.1\|WP_002221872.1\|1305775_1306765_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	3.90221e-172
NZ_CP031333.1\|WP_002226919.1\|1313037_1313661_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	7.65681e-89
NZ_CP031333.1\|WP_002226918.1\|1314651_1315779_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	6.45741e-46
NZ_CP031333.1\|WP_002215509.1\|1306924_1308352_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NZ_CP031333.1\|WP_019273923.1\|1308676_1310572_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP031333.1\|WP_014581298.1\|1300411_1301404_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	1.72923e-117
NZ_CP031333.1\|WP_002218608.1\|1297070_1297448_+\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	2.6515e-43
NZ_CP031333.1\|WP_072104497.1\|1299191_1300364_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|223834	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane].	2.68095e-176
NZ_CP031333.1\|WP_021437269.1\|1296417_1296915_-\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	1.40215e-56
NZ_CP031333.1\|WP_002216270.1\|1315959_1316517_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	8.06261e-103
NZ_CP031333.1\|WP_002221868.1\|1312165_1312939_-\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.38752e-83
NZ_CP031333.1\|WP_002218592.1\|1316572_1317319_+\|isoprenyl-transferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	1.02554e-133
NZ_CP031333.1\|WP_002218599.1\|1310639_1311224_+\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	2.56478e-105

>NZ_CP031333.1|WP_014581297.1|1301897_1304657_+|Rne/Rng-family-ribonuclease
MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVTEFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETEVQTGKRRRNGSRSERGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVAERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAEQARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEVATVPAEEMIQVETRQG
>NZ_CP031333.1|WP_025461156.1|1301481_1301775_-|hypothetical-protein
MHVPENRVRKGRIKKAIKIDAAVCLPRSERCGRKNGGRLLLVIVMPVFWAVCVWDLGPGCRLTSAPKRQNQFKLDYVLRLPAGNRRRENALRSAFLI
>NZ_CP031333.1|WP_014581298.1|1300411_1301404_-|RluA-family-pseudouridine-synthase
MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRIIRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFDVVYEDDALLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVKLPLFKYTGAQGEKMVRVSADGQSAHTVFRALNRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKAELPPDLAQFAVMLENGTKM
>NZ_CP031333.1|WP_072104497.1|1299191_1300364_-|lipid-A-disaccharide-synthase
MWGQTNMVDKKSPLIAVSVGEASGDLLGAHLIRAIRKRCPQARFVGIGGELMKAEGFESLYDQERLAVRGFVEVVRRLPEILRIRRGLVRDLLSLKPDVFVGIDAPDFNLGVAEKLKRSGIPTVHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLYLDAGGRAEFVGHPMAQLMPLEDDRETARQTLGVDAGIPVFALLPGSRVSEIDYMAPVFFQTALLLLERYPAACFLLPAATEATKRRLAEILQRSEFAGLPLTVTDRQSETVCRAADAVLVTSGTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPELLQHDAVPEKLAAALADWYEHPDKVAALQQDFRVLHLLLKKDTADLAARAVLEEAGC
>NZ_CP031333.1|WP_015815957.1|1298938_1299184_-|hypothetical-protein
MDYLLEAARITKEGGEIVINGTSNNKYLRGIPNEGELARVGLRLKYNGPLKEEFKQLKFHKSSRTNLDSKNLKLIVFEKVK
>NZ_CP031333.1|WP_002243953.1|1298526_1298937_-|hypothetical-protein
MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFPQEIPTPNYIDWVKIKFKQFSYLKFIYGYATKSQDKDIDNILELGELKQDDEILDYGGTLELIGGRCDLLTGFSIDIVCREIELEFLDQESFN
>NZ_CP031333.1|WP_012222102.1|1298263_1298509_-|hypothetical-protein
MPRKQLYRISFSVETPPLGHLSFGAVESDFIWEGRNPFQIRTTHRATLYVSSRVLKHMPIRSLSAKCRLNNIFSDGILYGG
>NZ_CP031333.1|WP_002228897.1|1297457_1298267_+|4-hydroxy-tetrahydrodipicolinate-reductase
MTPLKIAIAGANGRMGRVLVEAVNNHPDTVLSGALEHSGSEALGLDAGYAVGLKTGIAISDDVDAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTGFDDAGKAAIHTAAEQTGIVFAANFSVGVNLTFHILDTVARVLNEGYDIEIIEGHHRHKVDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHTALFATDGERVEITHKAGSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR
>NZ_CP031333.1|WP_002218608.1|1297070_1297448_+|outer-membrane-protein-assembly-factor-BamE
MNKTLILALSALLGLAACSAERVSLFPSYKLKIIQGNELEPRAVAALRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLVRTEGDVLQNAAEALKDRQNTDKP
>NZ_CP031333.1|WP_021437269.1|1296417_1296915_-|ferric-iron-uptake-transcriptional-regulator
MGKQAEIAYYNVYCFTGVLNIMEKFNNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRILLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVTEFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR
>NZ_CP031333.1|WP_002221872.1|1305775_1306765_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKNLLRARAEALGKSVVLRDFDPESGGAAYGELEVLHIPAVEAVEAGKLNPANAAYVLQLLDTALAGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKGLRVALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFGIKNPKILVAGLNPHAGEGGHLGHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKYHSFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGSL
>NZ_CP031333.1|WP_002215509.1|1306924_1308352_+|sodium:alanine-symporter-family-protein
MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQFRLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVFWMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSLIFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVVPLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKRGLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYGDLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITAVFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKLKMGKDPEFKLSEHPGLKRRIKSDVW
>NZ_CP031333.1|WP_019273923.1|1308676_1310572_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQAVEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLKRGFKDAK
>NZ_CP031333.1|WP_002218599.1|1310639_1311224_+|ribonuclease-HII
MHILTAGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAAASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVRNLLAQQTLF
>NZ_CP031333.1|WP_014575111.1|1311236_1311482_+|hypothetical-protein
MPSELQTAFPASQLQRERTHTAIPAKNRKSKKKPKIRHSRAGGNPIRPVSVFFEFQVTSKPPFPQKRESRNSKLQEFIKND
>NZ_CP031333.1|WP_002221868.1|1312165_1312939_-|ParA-family-protein
MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQGNATTGSGIDKAGLQSGVYQVLLGDADVQSAAVRSKEGGYAVLGANRALAGAEIELVQEIAREVRLKNALKAVEEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGISDLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNIRLAEAPSHGMPVMAYDAQAKGTKAYLALADELAARVSGK
>NZ_CP031333.1|WP_002226919.1|1313037_1313661_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MERKERLRAGIAAMGLDISETAQDRLLVYVDLLKKWNKTYNLTALRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANTKKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTVHLLKDGGYWAAMKGVYPQEEIGRLPQDVCVEKVQRLDVPGLDAERHIVILSKR
>NZ_CP031333.1|WP_002226918.1|1314651_1315779_+|FUSC-family-protein
MNTSQRNRLVSRWLNSYERYRYRRLIHAVRLGGAVLFATASARLLHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGNLLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWLDSGLMRAMNVLIGAAIAIAAAKLLPLKSTLMWRFMLADNLADCSKMIAEISNGRRMTRERLEENMAKMRQINARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSEIRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLSTNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG
>NZ_CP031333.1|WP_002216270.1|1315959_1316517_+|ribosome-recycling-factor
MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDLMAI
>NZ_CP031333.1|WP_002218592.1|1316572_1317319_+|isoprenyl-transferase
MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGVSEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSEQLPIEQQRN

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Crispr_ID: NZ_CP031333_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_4

1523585-1523665

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCTTTTGCGGGAATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031333_4

>merge|NZ_CP031333|4|1523585-1523665|CRISPRCasFinder
CTAGATTCCCGCTTTTGCGGGAATGATGGGATGTAGGTTTTCTTAACCCTGCGTCCTAGATTCCCGCTTTTGCGGGAATGA

>NZ_CP031333|4|4|1523585-1523665|CRISPRCasFinder
CTAGATTCCCGCTTTTGCGGGAATGA	TGGGATGTAGGTTTTCTTAACCCTGCGTC
CTAGATTCCCGCTTTTGCGGGAATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_014581600.1\|1535414_1536215_+\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|223986
NZ_CP031333.1\|WP_033908675.1\|1514073_1514514_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002218228.1\|1538196_1538571_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_014581602.1\|1531902_1533186_+\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NZ_CP031333.1\|WP_002223221.1\|1521408_1522866_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273342
NZ_CP031333.1\|WP_002227769.1\|1519412_1520516_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP031333.1\|WP_002223219.1\|1523960_1528130_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP031333.1\|WP_002218249.1\|1516284_1517127_-\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NZ_CP031333.1\|WP_002223215.1\|1533260_1533476_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002223225.1\|1514939_1515527_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171564
NZ_CP031333.1\|WP_014581601.1\|1533758_1535102_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP031333.1\|WP_002223223.1\|1518416_1519310_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NZ_CP031333.1\|WP_002220005.1\|1515548_1516295_-\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP031333.1\|WP_002221731.1\|1530561_1531791_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP031333.1\|WP_002218247.1\|1517625_1518075_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP031333.1\|WP_002223224.1\|1517243_1517552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_033909208.1\|1528184_1530011_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP031333.1\|WP_002238447.1\|1536254_1537241_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|223689
NZ_CP031333.1\|WP_033908471.1\|1514754_1514967_-\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP031333.1\|WP_002221729.1\|1533468_1533684_-\|DUF4177-domain-containing-protein	unknown	unknown	gnl\|CDD\|379366

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_002223219.1\|1523960_1528130_-\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP031333.1\|WP_014581602.1\|1531902_1533186_+\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	2.66773e-16
NZ_CP031333.1\|WP_002223221.1\|1521408_1522866_-\|MFS-transporter	gnl\|CDD\|273342	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP031333.1\|WP_002227769.1\|1519412_1520516_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP031333.1\|WP_033909208.1\|1528184_1530011_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	1.37869e-172
NZ_CP031333.1\|WP_002218249.1\|1516284_1517127_-\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	6.09039e-151
NZ_CP031333.1\|WP_002223225.1\|1514939_1515527_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171564	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional.	1.88454e-125
NZ_CP031333.1\|WP_014581601.1\|1533758_1535102_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP031333.1\|WP_002223223.1\|1518416_1519310_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	7.32936e-63
NZ_CP031333.1\|WP_002220005.1\|1515548_1516295_-\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	5.3181e-115
NZ_CP031333.1\|WP_002221731.1\|1530561_1531791_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP031333.1\|WP_002218247.1\|1517625_1518075_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.78246e-27
NZ_CP031333.1\|WP_014581600.1\|1535414_1536215_+\|competence/damage-inducible-protein-A	gnl\|CDD\|223986	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only].	3.15949e-88
NZ_CP031333.1\|WP_002238447.1\|1536254_1537241_+\|S49-family-peptidase	gnl\|CDD\|223689	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.73558e-78
NZ_CP031333.1\|WP_033908471.1\|1514754_1514967_-\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000221972
NZ_CP031333.1\|WP_002221729.1\|1533468_1533684_-\|DUF4177-domain-containing-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	7.07695e-09

>NZ_CP031333.1|WP_002223221.1|1521408_1522866_-|MFS-transporter
MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYIAINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISSGTPMPIAVFALIVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD
>NZ_CP031333.1|WP_002227769.1|1519412_1520516_+|peptide-chain-release-factor-2
MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV
>NZ_CP031333.1|WP_002223223.1|1518416_1519310_+|patatin-like-phospholipase-family-protein
MVTFSKIRPLLAIAAAALLAACGTAGNNAARKPVQTAKPAAVVGLALGGGASKGFAHIGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEILGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRRIQQFPIKFAAIATDFETGKAVAFNQGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISARPGKNISQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIRLGEEAARAALPEIKRKLAAYRY
>NZ_CP031333.1|WP_002218247.1|1517625_1518075_-|DoxX-family-protein
MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQFPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGYNVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD
>NZ_CP031333.1|WP_002223224.1|1517243_1517552_-|hypothetical-protein
MNKNIAAALAGALSLSLAAGAVAADKPASNATGVHKSAHGSCGASKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK
>NZ_CP031333.1|WP_002218249.1|1516284_1517127_-|DUF692-family-protein
MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWARKQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGGHLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAVAREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDADRVCYIHIAGHDVETPELLIDTHGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKECRRAA
>NZ_CP031333.1|WP_002220005.1|1515548_1516295_-|DUF2063-domain-containing-protein
MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNHSKYTPSPAAFIRQYRYDVTDDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSGWTEQRIIIPSLSAISENMEGNSPGQNHLSA
>NZ_CP031333.1|WP_002223225.1|1514939_1515527_-|sigma-70-family-RNA-polymerase-sigma-factor
MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTALDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK
>NZ_CP031333.1|WP_033908471.1|1514754_1514967_-|zf-HC2-domain-containing-protein
MVQPRKPEVNVMKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQLQTIKRSLAKTTRTSK
>NZ_CP031333.1|WP_033908675.1|1514073_1514514_-|hypothetical-protein
MIKETLMRPIFLSFVLFPILITACSTPDKSARWENIGTISNGNIHTYINKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSSLQLFDTKNTEISTQNYTASSLRPMSILSGTLTEKQYETVCGKKL
>NZ_CP031333.1|WP_002223219.1|1523960_1528130_-|translocation/assembly-module-TamB
MTDTAPTDTDPTENGTRKMPSEHRPTPPAKKRRPLLKLSAALLSVLILAVCFLGWLAGTEAGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEGADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPAAVYLERFETGKISVGKTFDKQTVYLERLNAAYRYDRKGHRLDLKAADTPWSSSSGSASVGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHPFAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENTKAGFADRNGIPVRQVLGGFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLNIGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPANGQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRINPQLPAGNINGSINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKTDGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARNLHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQHRIRTHAAMTLDGKPFKFDLDASGGINRELTLWKGSIGILDIGGAFNLKLQNRMTLEAGAERVAASAANWQAMGGSLNLQHFSWDKKTGISAKGGAHGLHIAELHNFFKPPFEHNLVLNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGARFGRINADLGIANAFGGNMANAPLGGRITASLPDLGALKPFLPAAAQNITGSLNAAAQIGGRVGSPSVNAAVNGSSNYGKINGNITVGQSRSFDTAPLGGRLNLTVADAEVFRNFLPVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRKWVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRYSPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLNDGIRFAGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFVGPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGSGSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQLTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGSRSSGGELTYTIRFDRFSGSDKKDSAGNSKGK
>NZ_CP031333.1|WP_033909208.1|1528184_1530011_-|outer-membrane-protein-assembly-factor
MIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFKNKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEASDNVKTMLRSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEYYRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKAYPLAKLGNTRAAVNPDTATADLNVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHYSGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKGYIGSVVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVRDRAGIDARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDGKIGTTLGAFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTVARDNANVPSGLMFRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDAAANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF
>NZ_CP031333.1|WP_002221731.1|1530561_1531791_+|serine/threonine-transporter-SstT
MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLFGSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIILYLIGTFSAALTAVIAGMVFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGAALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKLLAVLLGCMAFIALAVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMALAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVATVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTDVLFTAAADLGRQRNRAE
>NZ_CP031333.1|WP_014581602.1|1531902_1533186_+|transferrin-binding-protein-like-solute-binding-protein
MFERSVIAMACIFALSACGGGGGGSPDVKSADTLSKPAAPVVAEKETEVKEDAPQAGSQGQGAPSTQGSQDMAAVSAENTGNGGAATTDKPKNEDEGPQNDMLQNSAESANQTGNNQPADSSDSAPASNPAPANGGSNFGRVDLANGVLIDGPSQNITLTHCKGDSCNGDNLLDEEAPSKSEFENLNESERIEKYKKDGKSDKFTNLVATAVQANGTNKYVIIYKDKSASSSFARFRRSARSRRSLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD
>NZ_CP031333.1|WP_002223215.1|1533260_1533476_-|hypothetical-protein
MFKLGVYTCLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGLFVIILAALLVFGQYFSEKKMKDDGFIN
>NZ_CP031333.1|WP_002221729.1|1533468_1533684_-|DUF4177-domain-containing-protein
MKEYKVVIYQESQLSSLFFGAAKVNPVNFSAFLNKQTPEGWRVVTMEKDLRRMLLFFKREAYVVILERDRV
>NZ_CP031333.1|WP_014581601.1|1533758_1535102_-|argininosuccinate-synthase
MSQNHTILQSLPVGQKVGIAFSGGLDTSAALLWMKLKGALPYAYTANLGQPDEDDYNAIPKKAMEYGAENARLIDCRAQLAHEGIAAIQCGAFHVSTGGIAYFNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPWLDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKIVKPIMGVAFWDENVEVKPEEVSVRFEEGVPVALNGKEYADPVELFLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQGRWFDSQALMLRETAQRWVAKAVTGEVTLELRRGNDYSILNTESPNLTYQPERLSMEKVEGAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLSLGEGSVLPQLGNKK
>NZ_CP031333.1|WP_014581600.1|1535414_1536215_+|competence/damage-inducible-protein-A
MNAFNLIIIGDEILHGSSQDKHFAFFKSLLESKGLKLNQVQYLPDEPDLLVRQLRRSFSDGMPTFVTGGIGATPDDHTRQAAAAALDLPVVRHPEAAKFIEGITQKRGEPLDSPEHAQRLKMADFPEGAELVPNPFNNTAGFSIREHYFFPGFPVMAHPMAEWVLETYYAGRFNQTERGSRSVYVFEQPESRITPLMEHIEQTYPGVRSYSLPSVGWTHSDGTQVKPHIEFGIKAEGEAVNLLDAAWAEVLHSLDGLGAELKNRVN
>NZ_CP031333.1|WP_002238447.1|1536254_1537241_+|S49-family-peptidase
MQYRIRRENEAPEAKNAGETLWERDIMREVLLSAYRDRRRERMWKNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR
>NZ_CP031333.1|WP_002218228.1|1538196_1538571_-|hypothetical-protein
MIIQNEFNLYPSNMLPERFCYPEKYVRISNDTSLIPYIQPHNFHWWFENYGTEGAEVTYIFRNSILPDLNLIPFASNGEWEAYFDGNDVTGNPRVIVINLDNIENHEFFNSFEEWLELAIKDTW

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Crispr_ID: NZ_CP031333_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_5

1705890-1705973

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCTTTCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031333_5

>merge|NZ_CP031333|5|1705890-1705973|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGGGATGTAGGTTTTCTTAACCCTGCGTCCTAGATTCCCGCTTTCGCGGGAATGACGG

>NZ_CP031333|5|5|1705890-1705973|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGG	GATGTAGGTTTTCTTAACCCTGCGTC
CTAGATTCCCGCTTTCGCGGGAATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_002221640.1\|1712544_1712823_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225655
NZ_CP031333.1\|WP_002221950.1\|1697438_1698107_-\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|226201
NZ_CP031333.1\|WP_002214868.1\|1699164_1699455_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP031333.1\|WP_002219885.1\|1708003_1708393_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_086558185.1\|1698201_1698953_+\|IS5-like-element-IS1301-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP031333.1\|WP_014581576.1\|1706317_1707760_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143407
NZ_CP031333.1\|WP_014581577.1\|1703453_1705235_-\|para-aminobenzoate-synthase	unknown	unknown	gnl\|CDD\|223225
NZ_CP031333.1\|WP_002221641.1\|1710539_1711316_+\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	unknown	unknown	gnl\|CDD\|223838
NZ_CP031333.1\|WP_002214854.1\|1707794_1707995_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002233157.1\|1695601_1695694_-\|methionine/alanine-import-family-NSS-transporter-small-subunit	unknown	unknown	gnl\|CDD\|293556
NZ_CP031333.1\|WP_002245234.1\|1694321_1695542_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP031333.1\|WP_002226757.1\|1694140_1694311_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338858
NZ_CP031333.1\|WP_002229974.1\|1713771_1714134_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002219880.1\|1711897_1712488_+\|phospholipid-binding-protein-MlaC	unknown	unknown	gnl\|CDD\|225410
NZ_CP031333.1\|WP_002214840.1\|1712819_1713647_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP031333.1\|WP_012779597.1\|1701877_1703395_+\|DUF560-domain-containing-protein	unknown	unknown	gnl\|CDD\|368004
NZ_CP031333.1\|WP_002248549.1\|1699547_1701182_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP031333.1\|WP_049776678.1\|1695690_1697322_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271366
NZ_CP031333.1\|WP_002221642.1\|1709690_1710491_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224052
NZ_CP031333.1\|WP_002223101.1\|1711366_1711861_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl\|CDD\|275223

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_002221640.1\|1712544_1712823_+\|STAS-domain-containing-protein	gnl\|CDD\|225655	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only].	2.58801e-34
NZ_CP031333.1\|WP_002221950.1\|1697438_1698107_-\|IS1595-family-transposase	gnl\|CDD\|226201	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.15912e-43
NZ_CP031333.1\|WP_002214868.1\|1699164_1699455_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.91348e-50
NZ_CP031333.1\|WP_086558185.1\|1698201_1698953_+\|IS5-like-element-IS1301-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.35609e-20
NZ_CP031333.1\|WP_014581576.1\|1706317_1707760_-\|aldehyde-dehydrogenase	gnl\|CDD\|143407	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.	0
NZ_CP031333.1\|WP_014581577.1\|1703453_1705235_-\|para-aminobenzoate-synthase	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	4.45744e-116
NZ_CP031333.1\|WP_002221641.1\|1710539_1711316_+\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	6.07394e-90
NZ_CP031333.1\|WP_002233157.1\|1695601_1695694_-\|methionine/alanine-import-family-NSS-transporter-small-subunit	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	3.9378e-05
NZ_CP031333.1\|WP_002245234.1\|1694321_1695542_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP031333.1\|WP_002226757.1\|1694140_1694311_+\|hypothetical-protein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	3.19315e-05
NZ_CP031333.1\|WP_002219880.1\|1711897_1712488_+\|phospholipid-binding-protein-MlaC	gnl\|CDD\|225410	COG2854, Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism].	4.87932e-67
NZ_CP031333.1\|WP_002214840.1\|1712819_1713647_+\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	2.75871e-103
NZ_CP031333.1\|WP_012779597.1\|1701877_1703395_+\|DUF560-domain-containing-protein	gnl\|CDD\|368004	pfam04575, DUF560, Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.	7.58738e-86
NZ_CP031333.1\|WP_002248549.1\|1699547_1701182_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP031333.1\|WP_049776678.1\|1695690_1697322_-\|sodium-dependent-transporter	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
NZ_CP031333.1\|WP_002221642.1\|1709690_1710491_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	6.89668e-144
NZ_CP031333.1\|WP_002223101.1\|1711366_1711861_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	8.69376e-73

>NZ_CP031333.1|WP_014581577.1|1703453_1705235_-|para-aminobenzoate-synthase
MPYFALFDDAVSGRAKRYQNYVESRFFRPEELDALDGALQKGWQKGLHSVLFADYEFGLPLTGVESERGGNLALHWFADCTDTDAASWLARHSDDLPAGISTPQSSVSETDYLDRIRQIHEAIRRGDTYQINYTTRLHLQAYGNPVSLYRRLRQPVPYAVLSHLPDAEGQSAWTLCFSPELFLKIGSDGTISTEPMKGTAPILGDGQDERRAAELQADPKNRAENVMIVDLLRNDFGKIAQTGKVCVPEPFKVSRFGSVWQMTSTIQAQALPDTSFADILRAAFPCGSITGAPKKMSMQIIESLETEARGLYTGSIGYLKPCAGGLGFEGAFNVVIRTLSLTPLSDGIYQGVYGVGSGIVIDSDPAAEYRECGWKARFLNELRPDFGIFETLRAENGRCTLLDRHLCRLKTSAQALNLPLPDGCENQIKQYIADLPDGAFRVKALLASDGISLSRAVLNRLTDKQRVIISPTILPAQNYLRRFKTTCRTVFDQAWQTAETQGAFDSLFFNSDGILLEGGRSNVFVKHRGQWLTPSLDLDILNGIMRQAVLDEPQKYLQTNQVIETHITQKTLQEAEEIRLSNALRGVFAAALA
>NZ_CP031333.1|WP_012779597.1|1701877_1703395_+|DUF560-domain-containing-protein
MLYFRYGFLVVWCAAGVSAAYGADAPAILDDKALLQVQRSVSDKWAESDWKVENDAPRVVDGDFLLAHPKMLEHSLRDALNGNQADLIASLADLYAKLPDYDAVLYGRARALLAKLAGRPAEAVARYRELHGENAADERILLDLAAAEFDDFRLKSAERHFAEAAKLDLPAPVLENVGRFRKKTEGLTGWRFSGGISPAVNRNANNAAPQYCRQNGGRQICSVSRAERAAGLNYEIEAEKLTALADNHYLLFRSNIGGTSYYFSKKSAYDDGFGRAYLGWQYKNARQTAGILPFYQVQLSGSDGFDAKTKRVNNRRLPPYMLAHGVGVQLSHTYRPNPGWQFSVALEHYRQRYREQDRAEYNNGRQDGFYVSLAKRLGESATVFGGWQFVRFVPKRETVGGAVNNAAYQRNGVYAGWAQEWRQLGGLNSRVSASYARRNYKGVAAFSTEAQRNREWNVSLALSHDKLSYKGIVPALNYRFGRTESNVPYAKRRNSEVFVSADWRF
>NZ_CP031333.1|WP_002248549.1|1699547_1701182_+|chaperonin-GroEL
MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNPFVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLQDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAVPDMGGMGGMGGMM
>NZ_CP031333.1|WP_002214868.1|1699164_1699455_+|co-chaperone-GroES
MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVGAGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK
>NZ_CP031333.1|WP_086558185.1|1698201_1698953_+|IS5-like-element-IS1301-family-transposase
MARTAITDNIWEQLQTTMKAHGCHQWKNDRTVMEAILWKLRTGAPWRDIPIELGSWKTAYNRFNRWSKKRLVAEFFFDLRKEIDKEWVFIDGSYVRCHQHASGARRGFDRAIGQSRGGNTTKIHLCVDSHGNPLDFKVTGGNVHDGQVANDLIEVIQEAQYFIADKGYDSQEIRDKAIEHGMKAIIPKRKNAKKPNPDFDSYLYKLRHLVENAFARLKQFRSIATRYEKLARNFKSMLYLACSIIHAKLN
>NZ_CP031333.1|WP_002221950.1|1697438_1698107_-|IS1595-family-transposase
MLPSKYEDNALQIKEKSTERTAPFFVLEVTARSAADILGIHPNSAVLFYRKIRTVINHHLALAADEVFEGPVEPDESDFGGRRKGRRGRGAAGKVVVFGILKRNGRGYTVVVDNAKSETLLPVIKKKIMPDSIVYTDSLSSCDKLDVSGFIHYRINHSKEFADRQNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFNFGTPSQQLKILRDWCGI
>NZ_CP031333.1|WP_049776678.1|1695690_1697322_-|sodium-dependent-transporter
MFFQKTLSLSDAISIYFAYNGLFLINNSRGINVSDSKTKERATFGTRRAFMIAAIGSAVGLGNIWRFPYIAFENGGGAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVICIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMAGPEALGLDFVGKVAGPLAGVWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWSKLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAGIGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAGVTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFVNTYGIVAAGFAYVAAIIISGRLPELRKHLNALSSIRIGGLWTVCVVVTVVMLGYMLFKDTSGLMEKNYEGYPDGFLSIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQGEEK
>NZ_CP031333.1|WP_002233157.1|1695601_1695694_-|methionine/alanine-import-family-NSS-transporter-small-subunit
MSTSAIVMMIVSIVIIWGGLLLSLLRLPNE
>NZ_CP031333.1|WP_002245234.1|1694321_1695542_+|diaminopimelate-decarboxylase
MTLFCEQVPYPRLAEAFGTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELVRVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLIEACERILILVDALAAEGIVLEHLDLGGGVGIVYKDESVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVETKNISPLTANIVGPICETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNARNRAAEVLVDGNEYRLIRRRETLEQQMANELACL
>NZ_CP031333.1|WP_002226757.1|1694140_1694311_+|hypothetical-protein
MKYGVFFAAATALLLSACGYKGDLYLPKEGDKARFGVIQTGLQLQSKPQSAPPTQK
>NZ_CP031333.1|WP_014581576.1|1706317_1707760_-|aldehyde-dehydrogenase
MKQLAMYINGRFENDFNGEWRDVLNPSTEETIAREPKGGKADVDRAVAAARAAQPAWERLPAVERGAYLRKIAQGIRERADELTDTIVAEGGKTKDLARVEVMFTADYLDYQAEWARRYEGEIIQSDRPRENILLFKRPLGVIAGILPWNFPFFLIARKMGPALVTGNTIVVKPSSVTPINCHIFAEIVDAVGLPAGVFNVVNGPGAEIGNALSAHPQVDMVSLTGSVEAGRQVMEAASANITKVSLELGGKAPAIVLKDADLDLAVKSILASRVGNTGQICNCAERVYVHSCLKDAFIEKMTAAMKGVRYGNPAEAEAGALEMGPLIEERAVKAVAEKVERAVKQGAKLVCGGKRAEGRGYFFEPTLLTDTDNSMDIMKEETFGPVLPVSTFDTLDQVIALANDCEFGLTSSVYTTNLNEAFYVTRRLQFGETYINRENFEAMQGFHAGWKKSGIGGADGKHGLEEYLQTQVVYLETDI
>NZ_CP031333.1|WP_002214854.1|1707794_1707995_-|hypothetical-protein
MDTVGSLAIGYATGGNAGAFTGANADWNNRQLHSSEYKLAEQYADIVASRLNISKETCTVIYLGIN
>NZ_CP031333.1|WP_002219885.1|1708003_1708393_-|hypothetical-protein
MLYKCKIKKLDNTIEEAVLIEINGYELHCFISYCPFKIFENQFYEVELSYEIFNDYILDKSTSNIGFRKIDDSFKYEITAELKNNHLTLQNIQFEEDEYLINYSYLDNCLVTLTADRISVSFIREIQAA
>NZ_CP031333.1|WP_002221642.1|1709690_1710491_+|ABC-transporter-ATP-binding-protein
MSPSPFIEMKDVAFAYGDRPILKNINFSIPQGNFAAVMGGSGSGKTTLMRLITGQIRPQSGQVLIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFDNIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSRRVALARTIALDPEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSIMVTHDIEKSLEIVDQVIFLAHGEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLQQDLLG
>NZ_CP031333.1|WP_002221641.1|1710539_1711316_+|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE
MNFIRSVGAKTLGLIQSLGSITLFLLNILAKSGTAFVRPRLSVRQVYFAGVLSVLIVAVSGLFVGMVLGLQGYTQLSKFKSADILGYMVAASLLRELGPVLAAILFASSAGGAMTSEIGLMKTTEQLEAMNVMAVNPVARVVAPRFWAGVFSMPLLASIFNVAGIFGAYLVGVSWLSLDSGIFWSQMQNNITIHYDVINGLIKSAAFGVAVTLIAVHQGFHCVPTSEGILRASTRTVVSSALTILAVDFILTAWMFTD
>NZ_CP031333.1|WP_002223101.1|1711366_1711861_+|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MKKNILEFWVGLFVLIGAAAVAFLAFRVAGGAAFGNSGKTYTVYADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAEKAAE
>NZ_CP031333.1|WP_002219880.1|1711897_1712488_+|phospholipid-binding-protein-MlaC
MKKSSLISALGIGILSIGMAFAAPADAVNQIRQNATQVLSILKSGDANTARQKAEAYAIPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGTMLKLKNANVNVKDNPIVNKGGKEIIVRAEVGVPGQKPVNMDFTTYQSGGKYRTYNVAIEGASLVTVYRNQFGEIIKAKGVDGLIAELKAKNGSK
>NZ_CP031333.1|WP_002221640.1|1712544_1712823_+|STAS-domain-containing-protein
MHTELNNGTLHISGDITVKTLTGEAFERFQQQCRLKETIAVDFGGVKRADSACVSLLLEVLRGCKGSVRLTGIPESVRALSELYEIKDWLKS
>NZ_CP031333.1|WP_002214840.1|1712819_1713647_+|VacJ-family-lipoprotein
MKKTAYAFLLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQADRYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGINTTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLPVLGPSTVRDALGTGITSVYSPKNIVFRTPVGRWGTTAVSAVSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRARQTGATPAEGTEDNIDIDELVESAETGAAETAVQEDSVSETQAEAAGEAETQPGTQP
>NZ_CP031333.1|WP_002229974.1|1713771_1714134_+|hypothetical-protein
MYEVNRSVFVLIPLEPFWNWLQTLPGNHLDGLTLEDIQADANSYLVRPCETADEVWDEIEARFEDIFAAELADWCEDEREWPALDADIFNEWFDIQLSTVITDLEHEPLAREAFQPINLN

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Crispr_ID: NZ_CP031333_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_6

1744107-1744214

Orphan

I-E

Consensus_repeat	Method
TTCGTCATTCCCGCGCAGGCGGGAATCTAGTCCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031333_6

>merge|NZ_CP031333|6|1744107-1744214|CRISPRCasFinder
TTCGTCATTCCCGCGCAGGCGGGAATCTAGTCCGTTCGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCACTTCGTCATTCCCGCGCAGGCGGGAATCCAGTCCGTT

>NZ_CP031333|6|6|1744107-1744214|CRISPRCasFinder
TTCGTCATTCCCGCGCAGGCGGGAATCTAGTCCGTT	CGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCAC
TTCGTCATTCCCGCGCAGGCGGGAATCCAGTCCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_002227678.1\|1753298_1755164_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|131258
NZ_CP031333.1\|WP_019742910.1\|1742025_1742865_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NZ_CP031333.1\|WP_002235212.1\|1756253_1756625_-\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|225863
NZ_CP031333.1\|WP_061732537.1\|1755301_1756228_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP031333.1\|WP_101090829.1\|1740028_1740931_+\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|133037
NZ_CP031333.1\|WP_002223072.1\|1751633_1753199_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP031333.1\|WP_002218026.1\|1756671_1757634_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_CP031333.1\|WP_002259765.1\|1739584_1739986_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP031333.1\|WP_019742912.1\|1743013_1743856_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NZ_CP031333.1\|WP_002258369.1\|1737073_1737484_+\|YggL-family-protein	unknown	unknown	gnl\|CDD\|225712
NZ_CP031333.1\|WP_002223073.1\|1750825_1751572_-\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NZ_CP031333.1\|WP_002214782.1\|1735345_1735768_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP031333.1\|WP_002239330.1\|1757883_1758075_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002236171.1\|1757660_1757864_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_019742909.1\|1740985_1741984_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP031333.1\|WP_101119385.1\|1746114_1746909_+\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NZ_CP031333.1\|WP_019742911.1\|1742876_1742972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002258370.1\|1736091_1736997_+\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP031333.1\|WP_101133158.1\|1737504_1739568_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP031333.1\|WP_002235218.1\|1745180_1745906_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_002227678.1\|1753298_1755164_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	0
NZ_CP031333.1\|WP_019742910.1\|1742025_1742865_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	9.81457e-82
NZ_CP031333.1\|WP_002235212.1\|1756253_1756625_-\|DUF1294-domain-containing-protein	gnl\|CDD\|225863	COG3326, COG3326, Predicted membrane protein [Function unknown].	1.04222e-30
NZ_CP031333.1\|WP_061732537.1\|1755301_1756228_-\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	4.37249e-127
NZ_CP031333.1\|WP_101090829.1\|1740028_1740931_+\|glycosyltransferase-family-8-protein	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	7.23803e-77
NZ_CP031333.1\|WP_002223072.1\|1751633_1753199_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP031333.1\|WP_002218026.1\|1756671_1757634_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
NZ_CP031333.1\|WP_002259765.1\|1739584_1739986_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.02401e-19
NZ_CP031333.1\|WP_019742912.1\|1743013_1743856_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	5.00866e-86
NZ_CP031333.1\|WP_002258369.1\|1737073_1737484_+\|YggL-family-protein	gnl\|CDD\|225712	COG3171, COG3171, Uncharacterized protein conserved in bacteria [Function unknown].	8.28689e-49
NZ_CP031333.1\|WP_002223073.1\|1750825_1751572_-\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	7.83531e-133
NZ_CP031333.1\|WP_101119385.1\|1746114_1746909_+\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	1.1102e-82
NZ_CP031333.1\|WP_019742909.1\|1740985_1741984_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	4.42261e-39
NZ_CP031333.1\|WP_002214782.1\|1735345_1735768_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	1.01545e-50
NZ_CP031333.1\|WP_101133158.1\|1737504_1739568_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP031333.1\|WP_002258370.1\|1736091_1736997_+\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP031333.1\|WP_002235218.1\|1745180_1745906_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	2.54281e-95

>NZ_CP031333.1|WP_019742912.1|1743013_1743856_+|glycosyltransferase-family-25-protein
MQNHVISLASAAERRAHIADTFGRHGIPFQFFDALMPSERLEQAMAELVPGLSAHPYLSGVEKACFMSHTVLWKQALDESLPYIAVFEDDVLLGEGAEKFLAEDTWLEERFDKDSAFIVRLETMFAKVIVRPDKVLNYENRSFPLLESEHWGTAGYIISREAMRFFLERFAVLPAEWIKAVDWMMFTYFFDKEGMPVYQVNPALCTQELHYAKFLSKNSMLGSDLEKDREQGRRHRRSLKVMFDLKRALGKFGREKKKRMERQRQAELEKAYGRRVISFK
>NZ_CP031333.1|WP_019742911.1|1742876_1742972_+|hypothetical-protein
MDIVFAADDRMRRLFTLRQYFGILHRLLKNR
>NZ_CP031333.1|WP_019742910.1|1742025_1742865_+|glycosyltransferase-family-25-protein
MQNHVISLASAAERRAHIADTFGRHGIPFQFFDALMPSERLEQAMAELVPGLSAHPYLSSVEKACFMSHVVLWKQALDEGVPYVAVFEDDVLLGEGAEKFLDEDAWLQERFDKDSAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISRKAMRFFLDRFAALPPEGLHPVDLMMFSDFFDREGVPVCQLNPALCAQELHYAKFHDQNSALGSLIEHDRLLNRKQQWRDSPANTFKRRLIRALTKISREREKRRQRREQLIGKIIVPFQ
>NZ_CP031333.1|WP_019742909.1|1740985_1741984_+|glycosyltransferase-family-2-protein
MQSLVSVLICAYNVEKYFAQSLAAVVNQTWRNLEILIVDDGSTDGTLAIAKDFQKRDSRIKILAQAQNSGLIPSLNIGLDELAKSGMGEYIARTDADDIAAPDWIEKIVGEMEKDRSIIAMGAWLEVLSEEKDGNRLARHHRHGKIWKKPTRPEDIADFFPFGNPIHNNTMIMRRSVIDGGLRYNTERDWAEDYQFWYDVSKLGRLAYYPEALVKYRLHANQVSSKYSIRQHEIAQGIQKTARNDFLQSMGFKTRFDSLEYRQIKAVAYELLEKHLPEEDFERARRFLYQCFKRTDTLPAGAWLDFAADGRMRRLFTLRQYFGILHRLLKNR
>NZ_CP031333.1|WP_101090829.1|1740028_1740931_+|glycosyltransferase-family-8-protein
MPPIFALRQKAWKRPIPIRKSGSTSSMPASVRQTGRRLLPICGGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLKPLWDTDLGDNWLGACIDLFVERQNAYKQKIGMADGEYYFNAGVLLINLKKWRQHDIFKMACEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNDAFMANRFASRHTDPLYRDRTYTAMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTSVPEEWRGKLAVPHRVFPTKRMLQRWRRKLSARFLRKIY
>NZ_CP031333.1|WP_002259765.1|1739584_1739986_+|glycosyltransferase-family-2-protein
MPSEAFRRHRAYRENKLQPLVSVLICAYNVEKYFAQSLAAVVNQTWRNLEILIVDDGSTDGTLAIAKDFQKRDSRIKILAHDRLLNRKQQRRDSPANTFKHRLIRALTKISREREKRRQRREQLIGKIIVPFQ
>NZ_CP031333.1|WP_101133158.1|1737504_1739568_+|glycine--tRNA-ligase-subunit-beta
MMTQTLLIELLTEELPPKALNNLGNHFAAAVAEGLEKAQLVDGAAEFTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAMKDGAPTKALEGFARGAGAKIEDLTIVHDGKQDVYAYEYVQTGKPLGGLLEDIINQVVKKLPIPKVMRWGSSTFTFVRPVHGLIVLHGGDIVNVSVLGLQSSNQTLGHRFLSNGEITIENADSYAEQMRGQGKVVASFAERKAAIQTALEGQARSLNAAVAADEALLDEVTALVEWPVVLEAGFEEHFLAVPQECLILTMQQNQKYFPLLDQNGKLMNRFLLVSNLQTEDPSHIIRGNERVLRARLSDAEFFYKQDQKATLESRLPKLSSVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAARLAKADLVTEMVGEFPELQGTMGKYYARLDGETEEIAEAVEQHYQPRFAGDKLPESKIATAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFDSFPKGLLNEQTPSETADFMQARLAVLLQNDYPQDIVAAVLAKQPRRLDDVVAKLQAVAAFKQLPEAAALAAANKRVQNLLKKADAELGAVNESLLQQDEEKALFAAAQGLQPKIAAAVAEGNFQTALSELASVKPQVDAFFDGVMVMADDAAVKQNRLNLLNRLAEQMNAVADIALLGE
>NZ_CP031333.1|WP_002258369.1|1737073_1737484_+|YggL-family-protein
MPVYFRTPSRKRLHKMNRRQHKKLHLGEFQTLIFGVQGSLHQAADDAEAFGRFMDELIAYLAANGLEMAGGGDCGDFSCLFQKSGARSLGETEKKAIISWLAGREDVATLYATPLVDGFYGDDGWENYSETYKQAD
>NZ_CP031333.1|WP_002258370.1|1736091_1736997_+|glycine--tRNA-ligase-subunit-alpha
MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRALGPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGIDPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITYGIERLAMYLQGVENVYDLVWAKTLDGNTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQFNDYEAQAKRLLAVEEASLALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRALSRAVAQKYVESREKLGFPLMKANAA
>NZ_CP031333.1|WP_002214782.1|1735345_1735768_+|F0F1-ATP-synthase-subunit-epsilon
MSIMQVEVVSSEQKIYSGEATFIVVPTVQGELGIYPRHEPIMSLVRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTVLADVAVRSAEMDQARAEEAKKAAEAGISQAKDDKALAEAHKALAAAIAQLKTLDYIRSHKK
>NZ_CP031333.1|WP_002235218.1|1745180_1745906_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPRFYLPENLSVGQTVALPDNIVRHLNVLRVRPNENITLFNGKGKAHAAQLTVLEKRRAEAEILHEDTTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAPLAALAAMQTLWGDFA
>NZ_CP031333.1|WP_101119385.1|1746114_1746909_+|inositol-monophosphatase-family-protein
MLHRLQKVVRHIAQTEIMPRFLNTPSCRKEDGSMLSEADIAAQTAFAAALPLLIDSPMLGEEMSRQEQSALWEQYSGEKGLWIVDPIDGTNNFVNGLPHFAVSVAFVRNGRAELGVIYNPVSGECFYAERGQGAFLNGTRLPLRLVDKKLNEAIAGVEIKYLRSGKLSSRMSTLAPFGTVRSMGSSTLDWCYLACGRYDVYVHGGQKLWDYAAGALIFEEAGGRLTTLEGDGFWSGEHVFKRSVVAALEPKLFERWVGWIRENQ
>NZ_CP031333.1|WP_002223073.1|1750825_1751572_-|3-oxoacyl-ACP-reductase-FabG
MSTQDLNGKIALVTGASRGIGAAIADTLAAAGAKVIGTATSESGAAAISERLAQWGSEGRVLNSAEPETIESLIADIEKAFGKLDILVNNAGITRDNLLMRMKEEEWDDIMQVNLKSVFRASKAVLRGMMKQRSGRIINITSVVGVMGNAGQTNYAAAKAGLIGFSKSMAREVGSRGITVNCVAPGFIDTDMTRALPEETRQTFTAQTALGRFGDAQDIADAVLFLASDQAKYITGQTLHVNGGMLMP
>NZ_CP031333.1|WP_002223072.1|1751633_1753199_-|glutamine-hydrolyzing-GMP-synthase
MTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLDEIKAFNPKGIILSGGPNSVYESDYQADTGIFDLGIPVLGICYGMQFMAHHLGGEVQPGNQREFGYAQVKTIDSELTRGIQDGEPNTLDVWMSHGDKVSKLPDGFAVIGNTPSCPIAMMENAEKQFYGIQFHPEVTHTKQGRALLNRFVLDICGAQPGWTMPNYIEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNESKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHPFPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTSWYDLTSQAFAVFLPVKSVGVMGDGRTYDYVIALRAVITSDFMTAHWAELPYSLLGKVSNRIINEVKGINRVVYDVSGKPPATIEWE
>NZ_CP031333.1|WP_002227678.1|1753298_1755164_-|lipid-A-export-permease/ATP-binding-protein-MsbA
MIEKLTFGLFKKEDARSFMRLMAYVRPYKIRIIAALIAIFGVAATESYLAAFIAPLINHGFSAPAAPPELSAAAGIISTLQNWREQFTYMVWGTENKIWTVPLFLIILVVIRGICRFTSTYLMTWVSVMTISKIRKDMFAKMLTLSSRYHQETPSGTVLMNMLNLTEQSVSNASDIFTVLTRDTMIVTGLTIVLLYLNWQLSLIVVLMFPLLSLLSRYYRDRLKHVISDSQKSIGTMNNVIAETHQGHRVVKLFNGQAQAANRFDAVNRTIVRLSKKITQATAAHSPFSELIASIALAVVIFIALWQSQNGYTTIGEFMAFIVAMLQMYAPIKSLANISIPMQTMFLAADGVCAFLDTPPEQDKGTLAPQRVEGRISFRNVDVEYRSDGIKALDGFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNKDAAVRTA
>NZ_CP031333.1|WP_061732537.1|1755301_1756228_-|ACP-S-malonyltransferase
MSFAFFFPGQGSQSLGMMNGFTGQAVVKNTFDEASAILGQDLWAMINGSDAEIIGQTVNTQPIMLAAGVAVYRAYLEAGGKTPAAVAGHSLGEYTALVAAGALDFANAVKLVRLRAELMQSAVPQGVGAMAAILGLEDGQVKAICAESAQGEVVEAVNFNSPGQVVIAGNAAAVGRAMTAAKEAGAKRALPLPVSVPSHCSLMKPAADKLAEALKTVEIKQPQIRVIHNADVAAYDDADKIKDALVRQLYSPVRWTETVNALVSDGIAESAECGPGKVLASLAKRINKTAACSALTDAGQVAAFIETH
>NZ_CP031333.1|WP_002235212.1|1756253_1756625_-|DUF1294-domain-containing-protein
MKRQAFFKPIACAAFLSAVSLRLPVLGACYAILSLYAFALYGIDKRRAVRGKRRIPEHRLLLPALFGGWAGAYLGSRIFRHKTAKKRFVVLFRLTVSGNVLATCILIDYFVPPELFVKLGQHL
>NZ_CP031333.1|WP_002218026.1|1756671_1757634_-|ketoacyl-ACP-synthase-III
MQYAKISGTGSYLPANRVSNDDLAQKVDTSDEWITARTGIKFRHIAAENEKTSDLAAEAARRALDAAGLDSGEIDLIIVATATPDMQFPSTATIVQQKLGITNGCPAFDVQAVCAGFMYALTTANAYIKSGMAKNALVIGAETFSRIVDWNDRTTCVLFGDGAGAVVLSAADKPGIIHSKLKADGNYLKLLNVPGQIACGKVSGSPYISMDGPGVFKFAVKMLSKIADDVIEEAGYTAAQIDWIVPHQANRRIIESTAKHLGLSMDKVVLTVQDHGNTSAASIPLALDTGIRSGQIKRGQNLLLEGIGGGFAWGAVLLQY
>NZ_CP031333.1|WP_002236171.1|1757660_1757864_-|hypothetical-protein
MPSEACLVFRRHFLRLKQRIGNPALPVHGNLHLKTICIPNHTPIPVSVICTLSVLGNHRFFAYNSRI
>NZ_CP031333.1|WP_002239330.1|1757883_1758075_-|hypothetical-protein
MIQTILEDGDIEVKNLKTENYSGKAREILGDSYPIEHISKNISTIQNIISEFMIQKQTPAPII

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Crispr_ID: NZ_CP031333_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_7

1825934-1826040

Orphan

I-E

Consensus_repeat	Method
GATTCCCGCCTGCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031333_7

>merge|NZ_CP031333|7|1825934-1826040|CRISPRCasFinder
CATTCCCGCGCAGGCGGGAATCTAGGATGCGGAATCTAGAGAAACCGTTTATCCGATAAGTTTCCGTTCCGACAGGTCTGGATTCCCGCCTGCGCGGGAATGACGGA

>NZ_CP031333|7|7|1825934-1826040|CRISPRCasFinder
CATTCCCGCGCAGGCGGGAATCTAGG	ATGCGGAATCTAGAGAAACCGTTTATCCGATAAGTTTCCGTTCCGACAGGTCTG
GATTCCCGCCTGCGCGGGAATGACGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_002224078.1\|1828083_1828593_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP031333.1\|WP_002223015.1\|1817996_1818386_-\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|225408
NZ_CP031333.1\|WP_002214617.1\|1816293_1816842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002227634.1\|1833328_1834420_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP031333.1\|WP_002214615.1\|1816844_1817408_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP031333.1\|WP_115435319.1\|1834689_1836570_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP031333.1\|WP_002214626.1\|1809343_1809601_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002214623.1\|1811946_1812846_+\|LysR-family-transcriptional-regulator-CrgA	unknown	unknown	gnl\|CDD\|176167
NZ_CP031333.1\|WP_014581559.1\|1813071_1816287_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP031333.1\|WP_041917712.1\|1826639_1827719_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
NZ_CP031333.1\|WP_115435289.1\|1822593_1825686_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|225953
NZ_CP031333.1\|WP_002227636.1\|1831538_1833215_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_CP031333.1\|WP_002223013.1\|1819129_1820263_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP031333.1\|WP_002223003.1\|1836632_1837928_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP031333.1\|WP_002221504.1\|1830932_1831364_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NZ_CP031333.1\|WP_115435290.1\|1828935_1829376_+\|HpaR-family-adhesin-repressor-NadR	unknown	unknown	gnl\|CDD\|188209
NZ_CP031333.1\|WP_002227645.1\|1811129_1811708_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP031333.1\|WP_002233027.1\|1829490_1829991_+\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	unknown	unknown	gnl\|CDD\|131349
NZ_CP031333.1\|WP_002221505.1\|1830006_1830702_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044
NZ_CP031333.1\|WP_162467430.1\|1809687_1810758_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_002223015.1\|1817996_1818386_-\|DUF559-domain-containing-protein	gnl\|CDD\|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	3.33205e-69
NZ_CP031333.1\|WP_002227634.1\|1833328_1834420_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP031333.1\|WP_002214615.1\|1816844_1817408_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	9.78323e-38
NZ_CP031333.1\|WP_115435319.1\|1834689_1836570_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.52162e-73
NZ_CP031333.1\|WP_002224078.1\|1828083_1828593_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	5.70546e-51
NZ_CP031333.1\|WP_002214623.1\|1811946_1812846_+\|LysR-family-transcriptional-regulator-CrgA	gnl\|CDD\|176167	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.62903e-123
NZ_CP031333.1\|WP_014581559.1\|1813071_1816287_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP031333.1\|WP_041917712.1\|1826639_1827719_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.41729e-144
NZ_CP031333.1\|WP_115435289.1\|1822593_1825686_-\|pilus-assembly-protein	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP031333.1\|WP_002227636.1\|1831538_1833215_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_CP031333.1\|WP_162467430.1\|1809687_1810758_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP031333.1\|WP_002223003.1\|1836632_1837928_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP031333.1\|WP_002221504.1\|1830932_1831364_-\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	4.77811e-54
NZ_CP031333.1\|WP_115435290.1\|1828935_1829376_+\|HpaR-family-adhesin-repressor-NadR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	2.11864e-61
NZ_CP031333.1\|WP_002227645.1\|1811129_1811708_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	8.286e-61
NZ_CP031333.1\|WP_002233027.1\|1829490_1829991_+\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	gnl\|CDD\|131349	TIGR02296, HpaC, 4-hydroxyphenylacetate 3-monooxygenase, reductase component. This model identifies the reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase. This enzyme catalyzes the first step (hydroxylation at the 3-position) in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.	1.59571e-97
NZ_CP031333.1\|WP_002221505.1\|1830006_1830702_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	8.54924e-99
NZ_CP031333.1\|WP_002223013.1\|1819129_1820263_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0

>NZ_CP031333.1|WP_115435289.1|1822593_1825686_-|pilus-assembly-protein
MNKTLKRRVFRHTALYAAILMFSHTGGGGAMAQTHQYAIIMNERKQPEVKSNVPSSIKDKDRKREYTHYKYKTGGGSVSFNNSDELVSQQSGTAVFGTATYLPPYGKVSGFDDKRLKERGNAVNWIHTTHPGLIGYSYAGVVCRDSTGCPKLVYKTRFSFDNPDLAKTGGGLDRHTEPSRDNSPIYKLKDHPWLGVSFNLGSENTVKNGNSFNKLISSFSENNNNQTIVSTTESHPISLGDGQREHTAVVYYLNAKLHLLDKKGIKDITNKTVQLGVLRPSIDVRLQRNTGLAGLLNFWASWDIKDNGQIPVKLGLPEVKAGRCINANNPNKSTKAPSPALTAPALWFGPVQNGKMEMYSASVSTYPDSSSSRIFLQNLKRKNDPNKPGRYSLADLSASEIKSKEPTFTGRQTVIRLDKGVHQIKLKGNEVEGFKGNNGNDTFGIVSEGSFMPDDSEWKKVLLPWTVRAFNDDGQFNTVNKEENNGKPKYSQKYRSRNNGKHERNLGDIVNSPIVAVGEYLATSANDGMVHIFKKSGGDDRNYSLKLSYIPGTMPRKDIQSQDSTLAKELRAFAEKSYVGDRYGVDGGFVLRQVEWKGQNHVFMFGAMGFGGRGAYALDLTKAENGDPTAVSLFDVKHDNNGKNSNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKDINNGDNKTALYVYDLESNNGTPIAKIEVPNGKGGLSSPTLVDKDLDGTVDIAYAGDRGGSMYRFDLSGNNPTSWSARAIFSGNKPITSAPAISQLKDKRVVIFGTGSDLSEEDVDSKEIQHVYGIFDNETDTGTAKDGQGNGLLEQVLSEENKTLFLTDYKRSDGSGSKGWVVKLKEGQRVTVKPTVVLRTAFVTIRKYNDGGCGAETAILGINTADGGKLTKKSARPIVPDTNTAVAQYSGHKKGTNGKSIPIGCMQKGNEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRAGKNNRCFSQKGVRTLLMNDLDSLDITGPMCGMKRISWREVFY
>NZ_CP031333.1|WP_002223013.1|1819129_1820263_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILTDPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWALGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPAQTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAIGAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTLQGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA
>NZ_CP031333.1|WP_002223015.1|1817996_1818386_-|DUF559-domain-containing-protein
MNPHEKLLTTDNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEKQYAQ
>NZ_CP031333.1|WP_002214615.1|1816844_1817408_-|ComF-family-protein
MAIELNGNWTKGFALDHHMQKSILLGYDELGHPHFDSKRSVIGEWVYQLKYRNQTQNVSLLVDYILQKFSGLESINLIVPAPFTTERINQPVQLIAKELSDRLNIPYSPILRKSSSHTPLKNIEEKSEKLEILNNSITIDNIDLSNKNILVIDDLFDSGATLEISTEKLFSKNARSVIVLAMTKTRG
>NZ_CP031333.1|WP_002214617.1|1816293_1816842_-|hypothetical-protein
MRTIFFSGSRSISRLNPQIRERINNILSNNFDIVIGDANGADKAIQKFLQEQDYANVHIYFSGKIYRNNVGNWQFVQVDSKGTGRVFYTAKDKKMAEIADYGFILWDGKSIGSLNNIAELLQLNKPSLVYHSQTKEFFKIKSSADLENILSNIEDDVLASILEKGNTFLKSYVTKQPSLIQE
>NZ_CP031333.1|WP_014581559.1|1813071_1816287_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVNTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFTLDELRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTLEEIHEICAIDPWFLAQIEDLMKEEKAVSDGILSDLDFAALRRLKRKGFSDKRLAQLLNVSEKEVREHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGSGPNRIGQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLAKVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGVGASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQALGYGICATRGTAQYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRN
>NZ_CP031333.1|WP_002214623.1|1811946_1812846_+|LysR-family-transcriptional-regulator-CrgA
MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGNNLCG
>NZ_CP031333.1|WP_002227645.1|1811129_1811708_-|NAD(P)H-dependent-oxidoreductase
MNILLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVIDAGYDVEAEIEKFVWMDAVIWQMPGWWMHEPWTVKKYIDEVLTAGHGKLYQSDGRHSVNPTEGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDFFEGKGVDVLYMHFHKANEFLGMTRLPTFLCNDVVKNPQVEKYLADYQAHLEKVFG
>NZ_CP031333.1|WP_162467430.1|1809687_1810758_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MAACPNESVKMDISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPLQDRVFGDLSDYVGEGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKPGMGLVFEGGIRAVMVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDSRYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVEKIEEHKMHSEWFEVPSETAAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTDIFITPGYRFNVADRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGDAMILGRNEGVVR
>NZ_CP031333.1|WP_002214626.1|1809343_1809601_-|hypothetical-protein
MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTVSEHHSARFAPLPQAGCFLKNQRNNPPEHRQPLKEQKWICAN
>NZ_CP031333.1|WP_041917712.1|1826639_1827719_-|iron-sulfur-cluster-carrier-protein-ApbC
MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHFGFPVAHIASETADRIQEILMPLTGDTHIHLSIDTEIGTHKVQPGVTTIKGVKNIIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIPVESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICTNCGHSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIAKIYTDAAFQIALSIADKGKDFSSRFPKIVVE
>NZ_CP031333.1|WP_002224078.1|1828083_1828593_+|protein-disulfide-oxidoreductase
MKKKLLSGIKFAVQTALVFLLVSLFLDWVRKPDEPAGAAGRPLTLLSGQRLTLGQFSRDRTVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSSAEVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRARIFQADVFG
>NZ_CP031333.1|WP_115435290.1|1828935_1829376_+|HpaR-family-adhesin-repressor-NadR
MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDTIEEVLGREKMLLLKDLLAELAKIEDALNS
>NZ_CP031333.1|WP_002233027.1|1829490_1829991_+|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component
MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVTPVTDEPPTVMLCINRSARIIPILSENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAYHIWHRGKTGQLEIEGALAHLHGHIVGKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRRQFRFLD
>NZ_CP031333.1|WP_002221505.1|1830006_1830702_+|nucleotidyltransferase-family-protein
MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQAGFTEIVINHAWLGRQIEDALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGGQPFLVVNGDVLTDIDFTAAFQAASSLPEHISAHLWLVENPPHNPDGDFSLLPDGSVRPEVNGGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRGEMRQNRVSGQKHTGLWLDVGTVCRLKEAQALAGAWK
>NZ_CP031333.1|WP_002221504.1|1830932_1831364_-|EamA-family-transporter
MSSNAWLFWALASAGFASLTAVFAKMGLQGIDSDFATFIRTLVILAALVLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPIDKFSLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR
>NZ_CP031333.1|WP_002227636.1|1831538_1833215_+|formate--tetrahydrofolate-ligase
MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINPAEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPVFGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELDIDPKRVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKERLGNILVAYAKDGSPVYAKDLKAHGAMAVLLKDAIKPNLVQTIEGTPAFVHGGPFANIAHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLAGLKPDAAVVVATVRALKYNGGVERANLGEENLEALAKGLPNLLKHISNLKNVFGLPVVVALNRFVSDSDAELAMIEKACAEHGVEVSLTEVWGKGGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKIRAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGFRITVRGITVSAGAGFIVALCGNMMKMPGLPKVPAAEKIDVDEHGVIHGLF
>NZ_CP031333.1|WP_002227634.1|1833328_1834420_+|redox-regulated-ATPase-YchF
MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVSEDGFENNPHLDRLKELAAKENAPVVAVCAAMESEIAELEEDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYEDFIALGGEAKAKEAGKMRVEGKEYVVQDGDVMHFLFNV
>NZ_CP031333.1|WP_115435319.1|1834689_1836570_+|acyltransferase
MSQALPYRPDIDTLRAAAVLSVIVFHIEKDWLPGGFLGVDIFFVISGFLMTTILHREMSGGGGRFSLKAFYIRRIKRILPAFFAVLAATLAGGFFLFTKDDFFLLWKSALTALGFASNLYFARGKDYFDPAQEEKPLLHIWSLSVEEQFYFVFPILLLLVARKSLRVQFGFLAALCALSLAASFMPSAFDKYYLPHLRACEMLVGSLTAVWMRYRQQRNLAVGRCCAAAGALFSSCILSACLFAYSEQTAYFPGPAALIPCLAVAALIYFNHYEHPLKKFFQWKITVAAGLISYSLYLWHWPILAFMRYIGPDNLPPYSPAAAVVLILLLSLFSYHCIEKPFKKWQGSFAQSVLWIYALPMLILGAGSFFAMRLPFMAQYDRLGLTRSNTSCHNNTGKQCLWGDTEKQPELLVLGDSHADHYKTFFDAVGKKEKWSATMVSADACAYVEGYASRVFQNWAACRAVYRYAEEHLPRYSKVVLAMRWGSQMPENSRSLAYDAGFFQKFDRMLHKLSSEKQAVYLMADNLASSYNVQRAYILSSRIPGYRQALRPDDESTLKANARIRELAAKYPNVYIIDAAAYIPADFQIGGLPVYSDKDHINPYGGTELAKRFSEKQRFLDTRHNH
>NZ_CP031333.1|WP_002223003.1|1836632_1837928_+|tyrosine--tRNA-ligase
MSVIQDLQSRGLIAQTTDIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRNQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLNQKQVFGLTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSIEEIDAIEAKDKASGTKPEAQRILAEEMTRLIHGEAALQAAQRISESLFAEDQSSLTESDFEQLALDGLPVFEISDGINAVEALVKTGLASSNKEARGFVNAKAVLLNGKPAEANNPNHAAERPDDACLLTDEHKRFGKYTILRRGKRNHALLVWK

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Crispr_ID: NZ_CP031333_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_8

1826276-1826443

Orphan

I-E

Consensus_repeat	Method
GATTCCCGCCTGCGCGGGAATGACGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP031333_8

>merge|NZ_CP031333|8|1826276-1826443|CRISPRCasFinder
GATTCCCGCCTACGCGGGAATGACGGGTCTTTTATAATCTTTGAATATTGCTGTTGTTCTAAGGTCTAGATTCCCGCCTGCGCGGGAATGACGGTTTAGAAGTTGCCCGAAACCTCAAAAAAAACCGAAACCGAACAAGCCGGATTCCCGCCTGCGCGGGAATGACGG

>NZ_CP031333|8|8|1826276-1826443|CRISPRCasFinder
GATTCCCGCCTACGCGGGAATGACGG	GTCTTTTATAATCTTTGAATATTGCTGTTGTTCTAAGGTCTA
GATTCCCGCCTGCGCGGGAATGACGG	TTTAGAAGTTGCCCGAAACCTCAAAAAAAACCGAAACCGAACAAGCCG
GATTCCCGCCTGCGCGGGAATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_002224078.1\|1828083_1828593_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP031333.1\|WP_002223015.1\|1817996_1818386_-\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|225408
NZ_CP031333.1\|WP_002214617.1\|1816293_1816842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002227634.1\|1833328_1834420_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP031333.1\|WP_002214615.1\|1816844_1817408_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP031333.1\|WP_115435319.1\|1834689_1836570_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP031333.1\|WP_002214626.1\|1809343_1809601_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031333.1\|WP_002214623.1\|1811946_1812846_+\|LysR-family-transcriptional-regulator-CrgA	unknown	unknown	gnl\|CDD\|176167
NZ_CP031333.1\|WP_014581559.1\|1813071_1816287_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP031333.1\|WP_041917712.1\|1826639_1827719_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
NZ_CP031333.1\|WP_115435289.1\|1822593_1825686_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|225953
NZ_CP031333.1\|WP_002227636.1\|1831538_1833215_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_CP031333.1\|WP_002223013.1\|1819129_1820263_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP031333.1\|WP_002223003.1\|1836632_1837928_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP031333.1\|WP_002221504.1\|1830932_1831364_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NZ_CP031333.1\|WP_115435290.1\|1828935_1829376_+\|HpaR-family-adhesin-repressor-NadR	unknown	unknown	gnl\|CDD\|188209
NZ_CP031333.1\|WP_002227645.1\|1811129_1811708_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP031333.1\|WP_002233027.1\|1829490_1829991_+\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	unknown	unknown	gnl\|CDD\|131349
NZ_CP031333.1\|WP_002221505.1\|1830006_1830702_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044
NZ_CP031333.1\|WP_162467430.1\|1809687_1810758_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_002223015.1\|1817996_1818386_-\|DUF559-domain-containing-protein	gnl\|CDD\|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	3.33205e-69
NZ_CP031333.1\|WP_002227634.1\|1833328_1834420_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP031333.1\|WP_002214615.1\|1816844_1817408_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	9.78323e-38
NZ_CP031333.1\|WP_115435319.1\|1834689_1836570_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.52162e-73
NZ_CP031333.1\|WP_002224078.1\|1828083_1828593_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	5.70546e-51
NZ_CP031333.1\|WP_002214623.1\|1811946_1812846_+\|LysR-family-transcriptional-regulator-CrgA	gnl\|CDD\|176167	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.62903e-123
NZ_CP031333.1\|WP_014581559.1\|1813071_1816287_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP031333.1\|WP_041917712.1\|1826639_1827719_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.41729e-144
NZ_CP031333.1\|WP_115435289.1\|1822593_1825686_-\|pilus-assembly-protein	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP031333.1\|WP_002227636.1\|1831538_1833215_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_CP031333.1\|WP_162467430.1\|1809687_1810758_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP031333.1\|WP_002223003.1\|1836632_1837928_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP031333.1\|WP_002221504.1\|1830932_1831364_-\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	4.77811e-54
NZ_CP031333.1\|WP_115435290.1\|1828935_1829376_+\|HpaR-family-adhesin-repressor-NadR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	2.11864e-61
NZ_CP031333.1\|WP_002227645.1\|1811129_1811708_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	8.286e-61
NZ_CP031333.1\|WP_002233027.1\|1829490_1829991_+\|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component	gnl\|CDD\|131349	TIGR02296, HpaC, 4-hydroxyphenylacetate 3-monooxygenase, reductase component. This model identifies the reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase. This enzyme catalyzes the first step (hydroxylation at the 3-position) in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.	1.59571e-97
NZ_CP031333.1\|WP_002221505.1\|1830006_1830702_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	8.54924e-99
NZ_CP031333.1\|WP_002223013.1\|1819129_1820263_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0

>NZ_CP031333.1|WP_115435289.1|1822593_1825686_-|pilus-assembly-protein
MNKTLKRRVFRHTALYAAILMFSHTGGGGAMAQTHQYAIIMNERKQPEVKSNVPSSIKDKDRKREYTHYKYKTGGGSVSFNNSDELVSQQSGTAVFGTATYLPPYGKVSGFDDKRLKERGNAVNWIHTTHPGLIGYSYAGVVCRDSTGCPKLVYKTRFSFDNPDLAKTGGGLDRHTEPSRDNSPIYKLKDHPWLGVSFNLGSENTVKNGNSFNKLISSFSENNNNQTIVSTTESHPISLGDGQREHTAVVYYLNAKLHLLDKKGIKDITNKTVQLGVLRPSIDVRLQRNTGLAGLLNFWASWDIKDNGQIPVKLGLPEVKAGRCINANNPNKSTKAPSPALTAPALWFGPVQNGKMEMYSASVSTYPDSSSSRIFLQNLKRKNDPNKPGRYSLADLSASEIKSKEPTFTGRQTVIRLDKGVHQIKLKGNEVEGFKGNNGNDTFGIVSEGSFMPDDSEWKKVLLPWTVRAFNDDGQFNTVNKEENNGKPKYSQKYRSRNNGKHERNLGDIVNSPIVAVGEYLATSANDGMVHIFKKSGGDDRNYSLKLSYIPGTMPRKDIQSQDSTLAKELRAFAEKSYVGDRYGVDGGFVLRQVEWKGQNHVFMFGAMGFGGRGAYALDLTKAENGDPTAVSLFDVKHDNNGKNSNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKDINNGDNKTALYVYDLESNNGTPIAKIEVPNGKGGLSSPTLVDKDLDGTVDIAYAGDRGGSMYRFDLSGNNPTSWSARAIFSGNKPITSAPAISQLKDKRVVIFGTGSDLSEEDVDSKEIQHVYGIFDNETDTGTAKDGQGNGLLEQVLSEENKTLFLTDYKRSDGSGSKGWVVKLKEGQRVTVKPTVVLRTAFVTIRKYNDGGCGAETAILGINTADGGKLTKKSARPIVPDTNTAVAQYSGHKKGTNGKSIPIGCMQKGNEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRAGKNNRCFSQKGVRTLLMNDLDSLDITGPMCGMKRISWREVFY
>NZ_CP031333.1|WP_002223013.1|1819129_1820263_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILTDPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWALGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPAQTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAIGAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTLQGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA
>NZ_CP031333.1|WP_002223015.1|1817996_1818386_-|DUF559-domain-containing-protein
MNPHEKLLTTDNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEKQYAQ
>NZ_CP031333.1|WP_002214615.1|1816844_1817408_-|ComF-family-protein
MAIELNGNWTKGFALDHHMQKSILLGYDELGHPHFDSKRSVIGEWVYQLKYRNQTQNVSLLVDYILQKFSGLESINLIVPAPFTTERINQPVQLIAKELSDRLNIPYSPILRKSSSHTPLKNIEEKSEKLEILNNSITIDNIDLSNKNILVIDDLFDSGATLEISTEKLFSKNARSVIVLAMTKTRG
>NZ_CP031333.1|WP_002214617.1|1816293_1816842_-|hypothetical-protein
MRTIFFSGSRSISRLNPQIRERINNILSNNFDIVIGDANGADKAIQKFLQEQDYANVHIYFSGKIYRNNVGNWQFVQVDSKGTGRVFYTAKDKKMAEIADYGFILWDGKSIGSLNNIAELLQLNKPSLVYHSQTKEFFKIKSSADLENILSNIEDDVLASILEKGNTFLKSYVTKQPSLIQE
>NZ_CP031333.1|WP_014581559.1|1813071_1816287_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVNTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFTLDELRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTLEEIHEICAIDPWFLAQIEDLMKEEKAVSDGILSDLDFAALRRLKRKGFSDKRLAQLLNVSEKEVREHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGSGPNRIGQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLAKVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGVGASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQALGYGICATRGTAQYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRN
>NZ_CP031333.1|WP_002214623.1|1811946_1812846_+|LysR-family-transcriptional-regulator-CrgA
MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGNNLCG
>NZ_CP031333.1|WP_002227645.1|1811129_1811708_-|NAD(P)H-dependent-oxidoreductase
MNILLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVIDAGYDVEAEIEKFVWMDAVIWQMPGWWMHEPWTVKKYIDEVLTAGHGKLYQSDGRHSVNPTEGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDFFEGKGVDVLYMHFHKANEFLGMTRLPTFLCNDVVKNPQVEKYLADYQAHLEKVFG
>NZ_CP031333.1|WP_162467430.1|1809687_1810758_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MAACPNESVKMDISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPLQDRVFGDLSDYVGEGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKPGMGLVFEGGIRAVMVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDSRYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVEKIEEHKMHSEWFEVPSETAAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTDIFITPGYRFNVADRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGDAMILGRNEGVVR
>NZ_CP031333.1|WP_002214626.1|1809343_1809601_-|hypothetical-protein
MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTVSEHHSARFAPLPQAGCFLKNQRNNPPEHRQPLKEQKWICAN
>NZ_CP031333.1|WP_041917712.1|1826639_1827719_-|iron-sulfur-cluster-carrier-protein-ApbC
MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHFGFPVAHIASETADRIQEILMPLTGDTHIHLSIDTEIGTHKVQPGVTTIKGVKNIIAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIPVESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICTNCGHSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIAKIYTDAAFQIALSIADKGKDFSSRFPKIVVE
>NZ_CP031333.1|WP_002224078.1|1828083_1828593_+|protein-disulfide-oxidoreductase
MKKKLLSGIKFAVQTALVFLLVSLFLDWVRKPDEPAGAAGRPLTLLSGQRLTLGQFSRDRTVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSSAEVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRARIFQADVFG
>NZ_CP031333.1|WP_115435290.1|1828935_1829376_+|HpaR-family-adhesin-repressor-NadR
MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDTIEEVLGREKMLLLKDLLAELAKIEDALNS
>NZ_CP031333.1|WP_002233027.1|1829490_1829991_+|4-hydroxyphenylacetate-3-monooxygenase,-reductase-component
MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVTPVTDEPPTVMLCINRSARIIPILSENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAYHIWHRGKTGQLEIEGALAHLHGHIVGKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRRQFRFLD
>NZ_CP031333.1|WP_002221505.1|1830006_1830702_+|nucleotidyltransferase-family-protein
MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQAGFTEIVINHAWLGRQIEDALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGGQPFLVVNGDVLTDIDFTAAFQAASSLPEHISAHLWLVENPPHNPDGDFSLLPDGSVRPEVNGGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRGEMRQNRVSGQKHTGLWLDVGTVCRLKEAQALAGAWK
>NZ_CP031333.1|WP_002221504.1|1830932_1831364_-|EamA-family-transporter
MSSNAWLFWALASAGFASLTAVFAKMGLQGIDSDFATFIRTLVILAALVLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPIDKFSLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR
>NZ_CP031333.1|WP_002227636.1|1831538_1833215_+|formate--tetrahydrofolate-ligase
MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINPAEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPVFGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELDIDPKRVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKERLGNILVAYAKDGSPVYAKDLKAHGAMAVLLKDAIKPNLVQTIEGTPAFVHGGPFANIAHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLAGLKPDAAVVVATVRALKYNGGVERANLGEENLEALAKGLPNLLKHISNLKNVFGLPVVVALNRFVSDSDAELAMIEKACAEHGVEVSLTEVWGKGGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKIRAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGFRITVRGITVSAGAGFIVALCGNMMKMPGLPKVPAAEKIDVDEHGVIHGLF
>NZ_CP031333.1|WP_002227634.1|1833328_1834420_+|redox-regulated-ATPase-YchF
MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVSEDGFENNPHLDRLKELAAKENAPVVAVCAAMESEIAELEEDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYEDFIALGGEAKAKEAGKMRVEGKEYVVQDGDVMHFLFNV
>NZ_CP031333.1|WP_115435319.1|1834689_1836570_+|acyltransferase
MSQALPYRPDIDTLRAAAVLSVIVFHIEKDWLPGGFLGVDIFFVISGFLMTTILHREMSGGGGRFSLKAFYIRRIKRILPAFFAVLAATLAGGFFLFTKDDFFLLWKSALTALGFASNLYFARGKDYFDPAQEEKPLLHIWSLSVEEQFYFVFPILLLLVARKSLRVQFGFLAALCALSLAASFMPSAFDKYYLPHLRACEMLVGSLTAVWMRYRQQRNLAVGRCCAAAGALFSSCILSACLFAYSEQTAYFPGPAALIPCLAVAALIYFNHYEHPLKKFFQWKITVAAGLISYSLYLWHWPILAFMRYIGPDNLPPYSPAAAVVLILLLSLFSYHCIEKPFKKWQGSFAQSVLWIYALPMLILGAGSFFAMRLPFMAQYDRLGLTRSNTSCHNNTGKQCLWGDTEKQPELLVLGDSHADHYKTFFDAVGKKEKWSATMVSADACAYVEGYASRVFQNWAACRAVYRYAEEHLPRYSKVVLAMRWGSQMPENSRSLAYDAGFFQKFDRMLHKLSSEKQAVYLMADNLASSYNVQRAYILSSRIPGYRQALRPDDESTLKANARIRELAAKYPNVYIIDAAAYIPADFQIGGLPVYSDKDHINPYGGTELAKRFSEKQRFLDTRHNH
>NZ_CP031333.1|WP_002223003.1|1836632_1837928_+|tyrosine--tRNA-ligase
MSVIQDLQSRGLIAQTTDIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRNQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLNQKQVFGLTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSIEEIDAIEAKDKASGTKPEAQRILAEEMTRLIHGEAALQAAQRISESLFAEDQSSLTESDFEQLALDGLPVFEISDGINAVEALVKTGLASSNKEARGFVNAKAVLLNGKPAEANNPNHAAERPDDACLLTDEHKRFGKYTILRRGKRNHALLVWK

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Crispr_ID: NZ_CP031333_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031333_9

1868869-1868967

Orphan

I-E

Consensus_repeat	Method
TGGATTTCTGCCTGCGCGGGAATGACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031333_9

>merge|NZ_CP031333|9|1868869-1868967|CRISPRCasFinder
TGGATTTCTGCCTGCGCGGGAATGACGGCTCAAAAGTTACGAGACGAAAAACAACCGGAACCGGACAAGTTGGATTTCTGCCTGCGCGGGAATGACGGC

>NZ_CP031333|9|9|1868869-1868967|CRISPRCasFinder
TGGATTTCTGCCTGCGCGGGAATGACGGC	TCAAAAGTTACGAGACGAAAAACAACCGGAACCGGACAAGT
TGGATTTCTGCCTGCGCGGGAATGACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031333.1\|WP_002219786.1\|1874420_1876817_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP031333.1\|WP_002222986.1\|1858079_1859255_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NZ_CP031333.1\|WP_014581547.1\|1869036_1871322_-\|type-IV-pilus-secretin-PilQ	unknown	unknown	gnl\|CDD\|227133
NZ_CP031333.1\|WP_033914512.1\|1878672_1880625_+\|cytochrome-c-biogenesis-protein	unknown	unknown	gnl\|CDD\|224252
NZ_CP031333.1\|WP_002227620.1\|1876937_1877567_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP031333.1\|WP_014581549.1\|1863554_1864019_-\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|224246
NZ_CP031333.1\|WP_002222987.1\|1856121_1858032_-\|NADH-dependent-dehydratase-PglD	unknown	unknown	gnl\|CDD\|224011
NZ_CP031333.1\|WP_002214520.1\|1872551_1873151_-\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|225707
NZ_CP031333.1\|WP_014581552.1\|1854773_1856066_-\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|226485
NZ_CP031333.1\|WP_014581550.1\|1862412_1863522_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP031333.1\|WP_002214509.1\|1877772_1878396_+\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_CP031333.1\|WP_002239999.1\|1867346_1867859_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP031333.1\|WP_002232989.1\|1866187_1867267_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_CP031333.1\|WP_002214522.1\|1871340_1871886_-\|pilus-assembly-protein-PilP	unknown	unknown	gnl\|CDD\|225709
NZ_CP031333.1\|WP_014581548.1\|1864048_1864891_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP031333.1\|WP_002214517.1\|1873153_1874269_-\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|227306
NZ_CP031333.1\|WP_002227626.1\|1859387_1860629_-\|pilin-glycosylation-protein-PglB	unknown	unknown	gnl\|CDD\|376775
NZ_CP031333.1\|WP_014581551.1\|1860796_1862218_-\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225153
NZ_CP031333.1\|WP_061728242.1\|1880617_1881805_+\|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl\|CDD\|274447
NZ_CP031333.1\|WP_002217908.1\|1871903_1872551_-\|type-4a-pilus-biogenesis-protein-PilO	unknown	unknown	gnl\|CDD\|225708

Protein	Function_ID	Function_description	E-value
NZ_CP031333.1\|WP_002219786.1\|1874420_1876817_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP031333.1\|WP_002222986.1\|1858079_1859255_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	2.37451e-161
NZ_CP031333.1\|WP_014581547.1\|1869036_1871322_-\|type-IV-pilus-secretin-PilQ	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	0
NZ_CP031333.1\|WP_033914512.1\|1878672_1880625_+\|cytochrome-c-biogenesis-protein	gnl\|CDD\|224252	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones].	9.61002e-164
NZ_CP031333.1\|WP_002227620.1\|1876937_1877567_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	2.811e-104
NZ_CP031333.1\|WP_014581549.1\|1863554_1864019_-\|transcriptional-repressor-NrdR	gnl\|CDD\|224246	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].	8.8597e-74
NZ_CP031333.1\|WP_002222987.1\|1856121_1858032_-\|NADH-dependent-dehydratase-PglD	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NZ_CP031333.1\|WP_002214520.1\|1872551_1873151_-\|PilN-domain-containing-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	2.93941e-62
NZ_CP031333.1\|WP_014581552.1\|1854773_1856066_-\|valine--pyruvate-transaminase	gnl\|CDD\|226485	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism].	0
NZ_CP031333.1\|WP_014581550.1\|1862412_1863522_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	9.6763e-121
NZ_CP031333.1\|WP_002214509.1\|1877772_1878396_+\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.06154e-40
NZ_CP031333.1\|WP_002239999.1\|1867346_1867859_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	1.73511e-75
NZ_CP031333.1\|WP_002232989.1\|1866187_1867267_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
NZ_CP031333.1\|WP_002214522.1\|1871340_1871886_-\|pilus-assembly-protein-PilP	gnl\|CDD\|225709	COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion].	2.28298e-85
NZ_CP031333.1\|WP_014581548.1\|1864048_1864891_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.69581e-143
NZ_CP031333.1\|WP_002214517.1\|1873153_1874269_-\|pilus-assembly-protein-PilM	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	2.23923e-147
NZ_CP031333.1\|WP_002227626.1\|1859387_1860629_-\|pilin-glycosylation-protein-PglB	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	9.0318e-92
NZ_CP031333.1\|WP_014581551.1\|1860796_1862218_-\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	5.85906e-29
NZ_CP031333.1\|WP_061728242.1\|1880617_1881805_+\|c-type-cytochrome-biogenesis-protein-CcsB	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	6.81538e-80
NZ_CP031333.1\|WP_002217908.1\|1871903_1872551_-\|type-4a-pilus-biogenesis-protein-PilO	gnl\|CDD\|225708	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion].	3.93473e-90

>NZ_CP031333.1|WP_002239999.1|1867346_1867859_-|shikimate-kinase
MKNFNGKLILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEIAVAAGVPIPTIFEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETLLERTRCDNSRPLLQVADPLAKLRELYAARDPVYRQTADFTVESANCRQTVQTLLKRLSR
>NZ_CP031333.1|WP_002232989.1|1866187_1867267_-|3-dehydroquinate-synthase
MKTLTVHTPSHSYPIFIGNGLLPQAGSLLKPHLGKRAAIIANETVAPLYLGTLQTALDAAGVSHFSIILPDGEAHKNWQTLNLIFDGLMQNRAERKTTLIALGGGVIGDMVGFAAATYQRGAPFVQIPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQPQAVLADLDTLHTLPVRELSAGMAEVIKYGALGDIGFFEWLEQNISGLMTLDREKLAQAVYRCCQMKADIVAQDETEQGIRAWLNLGHTFGHAIETEMGYGTWLHGEAIAAGCVLAARLSEQLGKISAADTARLAALLEAAGLPSAPPVFAFEKWLEHMSHDKKVSGGIMRFIGLNRLGEANITEITDTDILRRTLQPYL
>NZ_CP031333.1|WP_014581548.1|1864048_1864891_-|class-II-glutamine-amidotransferase
MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFFEGKGVRLFHDDKPSANSPVADLVRAYQIKSENVIAHIRKASQGQTSLANTHPFMREMWGGYWLFAHNGHLIDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAGLTHEIRKFGLFNFMLSDGIALFAHASTLLHYIVRQAPFGKARLLDDDVMVDFAEVTTPSDRVAVIATLPLTRDESWSQLAVDELVMFREGKIILNDRPRHPVYMSVEEGLETARAAGVAV
>NZ_CP031333.1|WP_014581549.1|1863554_1864019_-|transcriptional-repressor-NrdR
MKCPFCTHPDTRVADSRLMEERNAVRRRRHCPNCGKRFGTLETAELKMPAVIGPDKKRSPFNAQRLRNDLTAAARKSALTPEQIDETVRLTEHRLYTSGLRDIPSAELADMVLKELLEHNTEAAVRFAALHKRFDNPADFASWLAQAVKTGGKA
>NZ_CP031333.1|WP_014581550.1|1862412_1863522_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MFSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIKTVFRKNGNAF
>NZ_CP031333.1|WP_014581551.1|1860796_1862218_-|lipopolysaccharide-biosynthesis-protein
MDTKEILGYAAGSIGSAVLAVIILPLLSWYFPADDIGRIVLMQTAAGLTVSVLCLGLDQAYVREYYAAADKDTLFKTLFLPPLLSAAAIAALLLSRPSLPSEILFSLDDAAAGIGLVLFELSFLPIRFLLLVLRMEGRALAFSSAQLVSKLAILLLLPLTVGLLHFPANTAVLTAVYALANLAAAAFLLFQNRCRLKAVRHAPFSPAVLHRGLRYGIPIALSSIAYWGLASADRLFLKKYAGLEQLGVYSMGISFGGAALLFQSIFSTVWTPYIFRAIEENAPPARLSATAESAAALLASALCLTGIFSPLASLLLPENYAAVRFIVVSCMLPPLFCTLVEISGIGLNVVRKTRPIALATLGALAANLLLLGLAVPSGGARGAAVACAASFWLFFAFKTESSCRLWQPLKRLPLYLHTLFCLTSSAAYTCFGTPANYPLFAGVWAAYLAGCILRHRKDLHKLFHYLKKQGFPL
>NZ_CP031333.1|WP_002227626.1|1859387_1860629_-|pilin-glycosylation-protein-PglB
MSKFFKRLFDIVASASGLIFLSPVFLILIYLIRKNLDSPVFFFQERPGKDGKPFKMVKFRSMRDALDSDGIPLPDGERLTPFGKKLRAASLDELPELWNILKGEMSLVGPRPLLMQYLPLYDNFQNRRHEMKPGITGWAQVNGRNALSWDEKFACDVWYIDHFSLCLDIKILLLTVKKVLIKEGISAQGEATMPPFTGKRKLAVVGAGGHGKVVADLAAALGRYREIVFLDDRAQGSVNGFSVIGTTLLLENSLSPEQYDVAVAVGNNRIRRQIAEKAAALGFALPVLVHPDATVSPSATVGQGSVVMAKAVVQAGSVLKDGVIVNTAATVDHDCLLNAFVHISPGAHLSGNTHIGEESWIGTGACSRQQIRIGSRATIGAGAVVVRDVSDGMTVAGNPAKPLPRKNPETSTA
>NZ_CP031333.1|WP_002222986.1|1858079_1859255_-|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MLNTFLSPWPCFTQEEADAVSKVLLSNKVNYWTGNECREFEKEFAAFAGTRYAVALANGTLALDVALKAMGIGAGDDVIVTSRTFLASASCIVNAGANPVFADVDLNSQNISAETVKAALTPTTKAVIVVHLAGMPAEMDGIMALAKEHNLWVIEDCAQAHGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKTLWEKMWSYKDHGKSYDAVYNHEHAPGFRWLHESFGTNWRMMEMQAVIGRIQLKRLPEWTARRRENAAKLAESLGKFSSIRLVEVADYIGHAQYKFYAFVKPEHLKDGWTRDRIVGELNARKVPCYQGSCSEVYLEKAFDNTPWRPKERLTNAVELGDTSLMFLVHPTLTDDEIAFCKKHIEAVLTEAAR
>NZ_CP031333.1|WP_002222987.1|1856121_1858032_-|NADH-dependent-dehydratase-PglD
MNLETLIALPRNIKKICFLIHDFLMIFIAFWFTQSLKADYSDEWFDFANWQSFLLTALLTITLFIRMGLYHAVTRFVSFRILTTALAGSLASAVLFFLNTLIFEERLRLALPIVYFLLLFVSVTGSRMVLRGLLSEHPKKQMIPVIIYGAGRSGRQLLEAVKQMREYSAAAFVDDDPKLWHTVIYDLAVYQPDAIAFLIERYGVEKILLAIPGATQEQRRRIINKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVAPDDRLMSADIEGKTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAIEKELRETCIQKRLDTEILPFLGSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLECALAATTSGVRTFVLISTDKAVRPTNTMGASKRMAELCLQALAAEPGQKTRFSMVRFGNVLGSSGSVVPLFEKQIAEGGPLTLTHPEITRYFMTIPEAAQLVIQAGAMGTGGDVFVLDMGESVKIIDLARQMITLSGLKPNTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRKTGHPRIMTANETMLPWHELSALLDRIRAACDRYDQQAIRTLLINAPTGFAPSDGICDLLWVRETHRKNAV
>NZ_CP031333.1|WP_014581552.1|1854773_1856066_-|valine--pyruvate-transaminase
MQFSAFGEKFTQHSGILQLMDDLGDALKSDKPVNMLGGGNPARIPEIDQAFADIFSKLAAEHAVENIGNYSNPQGDAVLIDALTAFLNREYSWNLTADNIALTNGSQNAFFYLFNLFGGKFNLSDGTSAEKAILLPLAPEYIGYADVHVEGQHFVSVKPKIENVEHEGEAGFFKYRVDFDALENLPELKAGKIGAICCSRPTNPTGNVLTDGEMARLDALAREHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAAPEVVKAVSSLNAIVNLAPTRFGAAIAAPLLESGEMKRLADQVIRPFYRNQAQTAVSLLKRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEMLKAEGTLIIPGEHFFVGIDTQDYPHAGECIRMSIAQDAQTLGKGIAAIGKTVRKLYDNV
>NZ_CP031333.1|WP_014581547.1|1869036_1871322_-|type-IV-pilus-secretin-PilQ
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPSTKSAVSVSKPFTPAKQQAAAPFTESVVSVSAPFSPEKQQAAASAKQQTAAPAKQQAAAPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRSILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIMGTAGNSLRY
>NZ_CP031333.1|WP_002214522.1|1871340_1871886_-|pilus-assembly-protein-PilP
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAELLLNSSDKNTEQAAAPAAEQN
>NZ_CP031333.1|WP_002217908.1|1871903_1872551_-|type-4a-pilus-biogenesis-protein-PilO
MASKSSKTNLDLNNLHLLNLPARLFIALLAVAAVLGLGYAGLFKSQMESLEEYEAKETELKNTYKQKSIDAASLNNLRDELASIRSAFDIMLKQLPTDAEIPNLVQELHQAGSSNGLRLDSVMPQPPVDDGPIKRLPYSISITGNYEQISQFTRDVGSLSRIITLESLKIAQSPENGGNPDGKSSILNLSAIATTYQAKSVEELAAEAAQNAEQK
>NZ_CP031333.1|WP_002214520.1|1872551_1873151_-|PilN-domain-containing-protein
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQEKDAFLIKKNKIEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELLSIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN
>NZ_CP031333.1|WP_002214517.1|1873153_1874269_-|pilus-assembly-protein-PilM
MRLFKSLKNPKKTDAKLPKKSSGLNNRAAIGIDIDQHSIKMVQLSGRSLNQIQLEKYVIAKLPKNIIQGNKVQNYDQLVTYLQQAYAKLGTSCKNIIASVPQNLATIEQLTYTDKDAELDLQGFVESSISEVSSISLEEANYDYQVLSQSAAGEAVLAVASRKDEIEPLIDAFNAAGMKLSALDVDIFGQYNAYALWINHFAPELAAEKVAIFGVYAAQTYALVIQDGKILYKQETSVSEEQLNQLIQRTYQVTEEKAEEIINSPQKPSDYQESVANYFNQQITQEIQRVLQFYYTTQTADDMTDIKHILLTGEAARQEGIAQTVASQTNADVQCVHPARYFADNLKTDKQQFELDAPTLTRAFGLAVRGL
>NZ_CP031333.1|WP_002219786.1|1874420_1876817_+|penicillin-binding-protein-1A
MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHYQPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWGVARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPERAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVRKIDQSALYVAEMVRQELYEKYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVEETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPGGRRVTLDRRALGFAARAVNNEKMGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFNRAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRYSGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETTPLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLVAGQNAPQAIDPRNAYIMYKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPKSMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLTLDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF
>NZ_CP031333.1|WP_002227620.1|1876937_1877567_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MNLFQNAKFFTTVNHLKDLPDTPLEIAFVGRSNAGKSSAINTLTNHVRLAYVSKTPGRTQHINFFELQNGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLQQRKQLIGLVLIMDARHPLKELDIRMLDFFHTTGRPVHILLSKADKLSKNEQIKTLSQVKKLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWFDAADAAASSPEEN
>NZ_CP031333.1|WP_002214509.1|1877772_1878396_+|cytochrome-c4
MKRLTLLAFVLAAGAVSASPKADVEKGKQVAATVCAACHAADGNSGIAMYPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGEANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVEQMNAYKSGQRKNTIMEDIANRMSEEDLKAVANFIQGLR
>NZ_CP031333.1|WP_033914512.1|1878672_1880625_+|cytochrome-c-biogenesis-protein
MRFAVALLSLLGIASVIGTVLQQNQPQTDYLVKFGPFWAQIFGFLGLYDVYASAWFVVIMMFLVVSTSLCLIRNVPPFWREMKSFREKVKEKSLAAMRHSSLLDVKIAPEVAKRYLEVQGFQGKTINREDGSVLIAAKKGTMNKWGYIFAHVALIVICLGGLIDSNLLLKLGMLTGRIVPDNQAVYAKDFKPESILSASNLSFRGNVNISEGQSADVVFLNADNGILVQDLPFEVKLKKFHIDFYNTGMPRDFASDIEVTDKATGEKLERTIRVNHPLTLHGITIYQASFADGGSDLTFKAWNLGDASREPVVLKATSIHQFPLEIGKHKYRLEFDQFTSMNVEDMSEGAEREKSLKSTLNDVRAVTQEGKKYTNIGPSIVYRIRDAAGQAVEYKNYMLPVLQEQDYFWITGTRSGLQQQYRWLRIPLDKQLKADTFMALREFLKDGEGRKRLVADATKGAPAEIREQFMLAAENTLNIFAQKGYLGLDEFITSNIPKEQQDKMQGYFYEMLYGVMNAALDETIRRYGLPEWQQDEARNRFLLHSMDAYTGLTEYPAPMLLQLDGFSEVRSSGLQMTRSPGALLVYLGSVLLVLGTVLMFYVREKRAWVLFSDGKIRFAMSSARSERDLQKEFPKHVESLQRLGKDLNHD
>NZ_CP031333.1|WP_061728242.1|1880617_1881805_+|c-type-cytochrome-biogenesis-protein-CcsB
MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTRSGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPLSVLLAYAAVGLYGGNIKSAEIFLLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAGFTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVFGFMAVVVGFVLWYSVSREAHTIQPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAELFSLRAEGKGGKSWLPQSVLIEEVMYKAIAVGFLFFTIATILGALWAADAWGRYWSWDPKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSYGTL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP031333_5	5.1\|1705919\|26\|NZ_CP031333\|CRISPRCasFinder	1705919-1705944	26	NZ_CP031333.1	86670-86695	0	1.0
NZ_CP031333_5	5.1\|1705919\|26\|NZ_CP031333\|CRISPRCasFinder	1705919-1705944	26	NZ_CP031333.1	87422-87447	0	1.0
NZ_CP031333_5	5.1\|1705919\|26\|NZ_CP031333\|CRISPRCasFinder	1705919-1705944	26	NZ_CP031333.1	2193575-2193600	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	711441-711476	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	764836-764871	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	764932-764967	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	765155-765190	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	765251-765286	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	765503-765538	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	766243-766278	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	1016549-1016584	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	1449634-1449669	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	1484180-1484215	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	2176430-2176465	0	1.0
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	2176712-2176747	0	1.0
NZ_CP031333_8	8.2\|1826370\|48\|NZ_CP031333\|CRISPRCasFinder	1826370-1826417	48	NZ_CP031333.1	1305179-1305226	0	1.0
NZ_CP031333_5	5.1\|1705919\|26\|NZ_CP031333\|CRISPRCasFinder	1705919-1705944	26	NZ_CP031333.1	620095-620120	1	0.962
NZ_CP031333_5	5.1\|1705919\|26\|NZ_CP031333\|CRISPRCasFinder	1705919-1705944	26	NZ_CP031333.1	1612682-1612707	1	0.962
NZ_CP031333_5	5.1\|1705919\|26\|NZ_CP031333\|CRISPRCasFinder	1705919-1705944	26	NZ_CP031333.1	2194245-2194270	1	0.962
NZ_CP031333_5	5.1\|1705919\|26\|NZ_CP031333\|CRISPRCasFinder	1705919-1705944	26	NZ_CP031333.1	2194891-2194916	1	0.962
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	764214-764249	1	0.972
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	1449290-1449325	1	0.972
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	1450251-1450286	1	0.972
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	1450922-1450957	1	0.972
NZ_CP031333_6	6.1\|1744143\|36\|NZ_CP031333\|CRISPRCasFinder	1744143-1744178	36	NZ_CP031333.1	1822063-1822098	1	0.972

1. spacer 5.1|1705919|26|NZ_CP031333|CRISPRCasFinder matches to position: 86670-86695, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

2. spacer 5.1|1705919|26|NZ_CP031333|CRISPRCasFinder matches to position: 87422-87447, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

3. spacer 5.1|1705919|26|NZ_CP031333|CRISPRCasFinder matches to position: 2193575-2193600, mismatch: 0, identity: 1.0

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgcgtc	Protospacer
**************************

4. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 711441-711476, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

5. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 764836-764871, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

6. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 764932-764967, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

7. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 765155-765190, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

8. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 765251-765286, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

9. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 765503-765538, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

10. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 766243-766278, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

11. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 1016549-1016584, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

12. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 1449634-1449669, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

13. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 1484180-1484215, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

14. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 2176430-2176465, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

15. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 2176712-2176747, mismatch: 0, identity: 1.0

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttccac	Protospacer
************************************

16. spacer 8.2|1826370|48|NZ_CP031333|CRISPRCasFinder matches to position: 1305179-1305226, mismatch: 0, identity: 1.0

tttagaagttgcccgaaacctcaaaaaaaaccgaaaccgaacaagccg	CRISPR spacer
tttagaagttgcccgaaacctcaaaaaaaaccgaaaccgaacaagccg	Protospacer
************************************************

17. spacer 5.1|1705919|26|NZ_CP031333|CRISPRCasFinder matches to position: 620095-620120, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgcaggttttcttaaccctgcgtc	Protospacer
****.*********************

18. spacer 5.1|1705919|26|NZ_CP031333|CRISPRCasFinder matches to position: 1612682-1612707, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgagtc	Protospacer
********************** ***

19. spacer 5.1|1705919|26|NZ_CP031333|CRISPRCasFinder matches to position: 2194245-2194270, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgagtc	Protospacer
********************** ***

20. spacer 5.1|1705919|26|NZ_CP031333|CRISPRCasFinder matches to position: 2194891-2194916, mismatch: 1, identity: 0.962

gatgtaggttttcttaaccctgcgtc	CRISPR spacer
gatgtaggttttcttaaccctgagtc	Protospacer
********************** ***

21. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 764214-764249, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcgcttgttttaagtttcgggtaacttctac	Protospacer
*********************************.**

22. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 1449290-1449325, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcacttgttttaagtttcgggtaacttccac	Protospacer
*******.****************************

23. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 1450251-1450286, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcacttgttttaagtttcgggtaacttccac	Protospacer
*******.****************************

24. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 1450922-1450957, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcacttgttttaagtttcgggtaacttccac	Protospacer
*******.****************************

25. spacer 6.1|1744143|36|NZ_CP031333|CRISPRCasFinder matches to position: 1822063-1822098, mismatch: 1, identity: 0.972

cggtttcgcttgttttaagtttcgggtaacttccac	CRISPR spacer
cggtttcacttgttttaagtttcgggtaacttccac	Protospacer
*******.****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 2496

Bacillus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002229267.1\|437_1820_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	2.1e-51	32.1
WP_002229261.1\|1986_2496_-	cyclophilin	A0A1B1IVS0	uncultured_Mediterranean_phage	2.9e-14	36.8

DBSCAN-SWA_2

6441 : 8409

Bathycoccus_sp._RCC1105_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213965.1\|6441_8409_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5ESM9	Bathycoccus_sp._RCC1105_virus	6.5e-110	42.4

DBSCAN-SWA_3

13765 : 14731

Staphylococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002248700.1\|13765_14731_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.0e-36	35.1

DBSCAN-SWA_4

22670 : 23969

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061732549.1\|22670_23969_+	adenylosuccinate synthase	A0A291AUF9	Pandoravirus	1.4e-57	30.9

DBSCAN-SWA_5

30347 : 37896

Synechococcus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217546.1\|30347_31319_+	ADP-heptose synthase	M4QF80	Synechococcus_phage	6.6e-15	29.6
WP_002219492.1\|31355_32591_+	DNA (cytosine-5-)-methyltransferase	Q6DMX0	Streptococcus_phage	2.9e-47	31.2
WP_002225406.1\|32592_33624_+	HNH endonuclease	NA	NA	NA	NA
WP_002227458.1\|33752_34757_+	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	1.9e-25	33.0
WP_002227457.1\|34833_36375_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.5e-101	42.4
WP_021437362.1\|36491_36584_+	hypothetical protein	NA	NA	NA	NA
WP_033909723.1\|37281_37896_+	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	1.1e-34	48.1

DBSCAN-SWA_6

41567 : 44609

Agrobacterium_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002236494.1\|41567_43859_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-165	42.6
WP_002221161.1\|43860_44163_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_002217533.1\|44405_44609_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.4e-22	78.8

DBSCAN-SWA_7

47724 : 56928

Pseudomonas_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581495.1\|47724_49425_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	7.4e-70	31.6
WP_014581494.1\|49856_51218_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	2.2e-24	37.7
WP_041917667.1\|51390_51714_+	periplasmic protein	NA	NA	NA	NA
WP_014581493.1\|51818_52772_-	PhoH family protein	H6X2N1	Pseudomonas_phage	7.1e-46	47.8
WP_025458644.1\|52810_54007_-	glycosyltransferase	NA	NA	NA	NA
WP_002222689.1\|54150_54855_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_002222688.1\|54918_55485_-	dCTP deaminase	S5VM63	Pseudomonas_phage	2.1e-74	71.1
WP_002222687.1\|55550_55967_-	hypothetical protein	NA	NA	NA	NA
WP_002217521.1\|56028_56928_-	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	1.5e-45	35.5

DBSCAN-SWA_8

71475 : 72267

Ostreococcus_lucimarinus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002234797.1\|71475_72267_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	4.5e-38	33.7

DBSCAN-SWA_9

77226 : 78210

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213870.1\|77226_78210_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	3.4e-43	34.7

DBSCAN-SWA_10

81873 : 82947

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002219453.1\|81873_82947_-	sulfate/molybdate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.4e-28	32.7

DBSCAN-SWA_11

88529 : 89936

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002240464.1\|88529_89936_+	replicative DNA helicase	O80281	Escherichia_phage	3.4e-129	54.2

DBSCAN-SWA_12

94569 : 98863

Paenibacillus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086558185.1\|94569_95320_+\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_086558185.1\|96231_96983_-\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_014581478.1\|98410_98863_+	dUTP diphosphatase	G0YQD9	Erwinia_phage	5.5e-49	71.9

DBSCAN-SWA_13

105047 : 111809

Moraxella_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002220686.1\|105047_105965_+	KilA-N domain-containing protein	A0A0R6PDL1	Moraxella_phage	2.6e-29	60.0
WP_002220687.1\|106022_106232_-	hypothetical protein	NA	NA	NA	NA
WP_002219435.1\|106368_106560_-	hypothetical protein	NA	NA	NA	NA
WP_014581475.1\|106562_106856_-	hypothetical protein	NA	NA	NA	NA
WP_002223443.1\|106852_107113_-	hypothetical protein	NA	NA	NA	NA
WP_002222643.1\|107147_107363_-	hypothetical protein	NA	NA	NA	NA
WP_002222642.1\|107432_108287_-	YfdQ family protein	NA	NA	NA	NA
WP_002220694.1\|108311_108671_-	hypothetical protein	I6XKT1	Burkholderia_virus	1.7e-05	32.6
WP_002219431.1\|108738_108939_-	hypothetical protein	NA	NA	NA	NA
WP_002219430.1\|109182_109608_-	hypothetical protein	NA	NA	NA	NA
WP_002220696.1\|109710_110427_-	helix-turn-helix transcriptional regulator	E5AGE6	Erwinia_phage	1.0e-33	37.8
WP_014581474.1\|110843_111809_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	1.8e-36	35.1

DBSCAN-SWA_14

130038 : 131430

environmental_Halophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002235699.1\|130038_131430_+	purine permease	H9YQ34	environmental_Halophage	2.3e-21	47.4

DBSCAN-SWA_15

144369 : 149516

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221128.1\|144369_145107_+	redoxin family protein	A0A1D8KSL1	Synechococcus_phage	5.1e-44	54.7
WP_002217391.1\|145355_146759_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_002217390.1\|147037_147415_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_002217389.1\|147408_147750_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_002222618.1\|147752_149516_+	succinate dehydrogenase flavoprotein subunit	M1GXT4	Acanthocystis_turfacea_Chlorella_virus	5.2e-18	27.8

DBSCAN-SWA_16

156562 : 165603

Erysipelothrix_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217382.1\|156562_157996_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-48	29.7
WP_002213751.1\|158120_158408_+	hypothetical protein	NA	NA	NA	NA
WP_002222616.1\|158506_159673_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_002222615.1\|159683_160574_+	succinate--CoA ligase subunit alpha	A0A2K9L1S3	Tupanvirus	2.0e-18	33.2
WP_002222614.1\|161124_162720_-	hypothetical protein	P79669	Escherichia_phage	8.5e-185	58.0
WP_002244094.1\|162753_165603_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-310	56.0

DBSCAN-SWA_17

170231 : 173755

Acinetobacter_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213729.1\|170231_170822_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.8e-74	66.8
WP_002227406.1\|170885_171944_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	6.2e-75	45.1
WP_002222083.1\|172720_173755_+	replication protein	S0F3I3	Stenotrophomonas_phage	3.1e-23	31.8

DBSCAN-SWA_18

182905 : 215104

Pseudomonas_phage(18.18%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581471.1\|182905_184486_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.1e-65	47.2
WP_025458829.1\|185099_186056_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	4.3e-27	34.4
WP_002227393.1\|186208_186643_+	gp16 family protein	L7P7R1	Pseudomonas_phage	8.0e-21	41.5
WP_002233778.1\|186623_187052_+	hypothetical protein	A0A0M3LRS6	Mannheimia_phage	2.1e-21	40.4
WP_002227392.1\|187359_187905_+	N-acetylmuramoyl-L-alanine amidase	U5PZX6	Acinetobacter_phage	2.4e-38	50.3
WP_002225299.1\|187901_188105_+	hypothetical protein	NA	NA	NA	NA
WP_002219316.1\|188274_188511_+	hypothetical protein	NA	NA	NA	NA
WP_002225297.1\|188482_188887_+	hypothetical protein	NA	NA	NA	NA
WP_014581468.1\|188928_189936_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014581467.1\|190068_191835_-	adhesin	NA	NA	NA	NA
WP_002239042.1\|194165_194336_-	rubredoxin	NA	NA	NA	NA
WP_002217325.1\|194807_195899_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_002233788.1\|196033_196582_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_002213703.1\|196736_197108_-	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_115435230.1\|197402_199094_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_002258184.1\|199618_203452_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA
WP_002233790.1\|203528_204530_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_002222579.1\|204743_204923_-	hypothetical protein	NA	NA	NA	NA
WP_115435231.1\|205109_206117_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_002239049.1\|206381_206585_-	hypothetical protein	NA	NA	NA	NA
WP_002239050.1\|206596_206878_-	hypothetical protein	NA	NA	NA	NA
WP_049776673.1\|206915_207179_-	hypothetical protein	NA	NA	NA	NA
WP_014581463.1\|208135_209011_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	3.0e-43	39.5
WP_002232332.1\|209055_209346_-	hypothetical protein	NA	NA	NA	NA
WP_002222576.1\|209357_209603_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.8e-12	55.0
WP_002219357.1\|209595_209820_-	DNA-binding protein	NA	NA	NA	NA
WP_002222575.1\|210091_210463_+	helix-turn-helix transcriptional regulator	A0A1S5NPU3	Burkholderia_phage	8.1e-06	35.1
WP_002222574.1\|210464_211088_+	hypothetical protein	NA	NA	NA	NA
WP_002233797.1\|211080_211275_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002225288.1\|211298_211862_+	hypothetical protein	NA	NA	NA	NA
WP_002225287.1\|211892_212840_+	hypothetical protein	NA	NA	NA	NA
WP_002222571.1\|212924_213428_+	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	2.7e-52	60.4
WP_002213679.1\|213539_213872_+	hypothetical protein	NA	NA	NA	NA
WP_002213678.1\|213868_214279_+	hypothetical protein	NA	NA	NA	NA
WP_002260534.1\|214283_214862_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.4e-50	50.6
WP_079274828.1\|214885_214996_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.8e-07	65.7
WP_079274829.1\|215002_215104_+\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_19

222136 : 226826

Staphylococcus_phage(33.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223889.1\|222136_223102_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	1.8e-36	35.5
WP_002222563.1\|223241_224201_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.2e-112	78.6
WP_002222562.1\|224266_225130_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_002222561.1\|225164_225527_-	RidA family protein	NA	NA	NA	NA
WP_002217103.1\|225601_226081_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_002217104.1\|226103_226826_+	DnaJ domain-containing protein	M1PC06	Moumouvirus	5.4e-14	62.1

DBSCAN-SWA_20

232209 : 233480

Ostreococcus_lucimarinus_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002244107.1\|232209_232644_-	hypothetical protein	G9E546	Ostreococcus_lucimarinus_virus	5.0e-23	43.8
WP_002235836.1\|232658_233054_-	restriction endonuclease NlaIV	G9E546	Ostreococcus_lucimarinus_virus	2.2e-17	37.6
WP_002240544.1\|233219_233480_-	DNA (cytosine-5-)-methyltransferase	A0A193GZ36	Escherichia_phage	2.4e-12	48.2

DBSCAN-SWA_21

241937 : 244409

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581461.1\|241937_244409_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.9e-74	30.3

DBSCAN-SWA_22

252499 : 318592

Mannheimia_phage(24.39%)

terminase,head,plate,transposase,tail,integrase

attL 257578:257606|attR 316537:316565

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221064.1\|252499_253465_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	8.0e-37	35.5
WP_002222546.1\|253586_255497_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	5.2e-56	30.2
WP_002219343.1\|255515_256160_-	DedA family protein	NA	NA	NA	NA
WP_002222545.1\|256324_257143_-	adhesin Opc	NA	NA	NA	NA
257578:257606	attL	NA	NA	NA	NA
WP_162467427.1\|257856_258792_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_061732572.1\|259095_260346_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	4.7e-98	52.7
WP_002222535.1\|260826_262602_-	gamma-glutamyltransferase	Q5GF27	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-05	28.7
WP_079760669.1\|263179_263401_+	hypothetical protein	NA	NA	NA	NA
WP_002213659.1\|263376_263595_+	YdcH family protein	NA	NA	NA	NA
WP_014581459.1\|263737_264712_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.5e-46	37.7
WP_014581458.1\|264957_265803_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_002225265.1\|265879_266482_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_002213654.1\|266537_266894_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_002225264.1\|266927_267464_+	NUDIX hydrolase	NA	NA	NA	NA
WP_002255874.1\|268130_268490_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.3e-13	46.1
WP_002221046.1\|268518_269199_-	membrane protein	NA	NA	NA	NA
WP_061728204.1\|269363_272396_+	hypothetical protein	G1FGP1	Mycobacterium_phage	6.5e-85	48.9
WP_002235743.1\|272620_273883_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.4e-137	62.6
WP_002221043.1\|273895_275005_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.9e-112	58.4
WP_002245026.1\|275250_277044_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	1.5e-09	26.9
WP_161624710.1\|277135_277801_+	YecA family protein	G9E3U3	Emiliania_huxleyi_virus	7.2e-05	40.3
WP_002229436.1\|277883_278735_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_002217263.1\|278805_279936_-	carboxypeptidase family protein	NA	NA	NA	NA
WP_061728205.1\|280105_281002_+	acetylglutamate kinase	NA	NA	NA	NA
WP_002222525.1\|282876_283545_-	HAD family hydrolase	NA	NA	NA	NA
WP_002213636.1\|283541_284210_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_162467426.1\|284314_284893_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	7.2e-09	29.9
WP_072104465.1\|285114_285327_-	helix-turn-helix transcriptional regulator	X4YTE2	Pseudomonas_phage	6.7e-05	42.0
WP_002227210.1\|285493_286207_-	transcriptional regulator	NA	NA	NA	NA
WP_002232388.1\|286421_286673_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_061386493.1\|286674_288651_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M3LPN5	Mannheimia_phage	5.5e-117	42.1
WP_014581454.1\|288686_289859_+	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	4.0e-51	45.3
WP_002219320.1\|289860_290382_+	hypothetical protein	NA	NA	NA	NA
WP_014581453.1\|290524_291070_+	N-acetylmuramoyl-L-alanine amidase	U5PZX6	Acinetobacter_phage	3.9e-41	51.4
WP_002225299.1\|291066_291270_+	hypothetical protein	NA	NA	NA	NA
WP_002219316.1\|291439_291676_+	hypothetical protein	NA	NA	NA	NA
WP_041917659.1\|291647_292067_+	hypothetical protein	NA	NA	NA	NA
WP_002221081.1\|292086_292269_+	hypothetical protein	NA	NA	NA	NA
WP_002215844.1\|292313_292484_-	YegP family protein	NA	NA	NA	NA
WP_002215845.1\|292496_292715_+	hypothetical protein	NA	NA	NA	NA
WP_002222592.1\|292711_293050_+	hypothetical protein	NA	NA	NA	NA
WP_002213717.1\|293061_293328_+	hypothetical protein	NA	NA	NA	NA
WP_002213716.1\|293324_293522_+	hypothetical protein	NA	NA	NA	NA
WP_002227349.1\|293524_294031_+	DUF1804 family protein	I6PBD1	Pseudomonas_phage	1.5e-39	50.6
WP_002222513.1\|294027_294618_-	hypothetical protein	A0A127KNL4	Pseudomonas_phage	8.1e-08	36.3
WP_002222512.1\|294630_296253_+\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	3.2e-224	69.7
WP_002219310.1\|296252_297821_+	DUF935 domain-containing protein	A0A0M3LRU4	Mannheimia_phage	1.0e-187	61.4
WP_002222511.1\|297807_299103_+\|head	phage head morphogenesis protein	B7SDN5	Haemophilus_phage	8.3e-114	50.1
WP_002213608.1\|299212_299629_+	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	2.4e-30	48.2
WP_002232421.1\|299859_300921_+	hypothetical protein	A0A2D1GNS3	Pseudomonas_phage	9.6e-60	43.0
WP_002221064.1\|301008_301974_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	8.0e-37	35.5
WP_002213605.1\|302085_302484_+	hypothetical protein	NA	NA	NA	NA
WP_002213604.1\|302483_302906_+	DUF1320 family protein	A0A2P9JZJ4	Alteromonadaceae_phage	2.2e-15	42.5
WP_002213603.1\|302895_303546_+	DUF1834 family protein	B7SDP5	Haemophilus_phage	6.8e-32	38.4
WP_002213602.1\|303542_303740_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_002222506.1\|303739_305152_+\|tail	tail sheath protein	B7SDP8	Haemophilus_phage	9.6e-124	52.6
WP_002222505.1\|305216_305594_+	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	5.3e-29	50.8
WP_002217234.1\|305597_305963_+	hypothetical protein	F6MIK9	Haemophilus_phage	5.3e-10	37.7
WP_014580554.1\|305937_306171_+	hypothetical protein	NA	NA	NA	NA
WP_002222503.1\|306214_306817_-	hypothetical protein	NA	NA	NA	NA
WP_014581450.1\|306971_309110_+	hypothetical protein	A0A0M3LPB6	Mannheimia_phage	1.2e-37	26.6
WP_002227342.1\|309109_310441_+	phage morphogeneis protein	A0A0M3LQ21	Mannheimia_phage	2.1e-64	35.4
WP_002222500.1\|310430_311576_+	hypothetical protein	F6MIL3	Haemophilus_phage	3.0e-115	57.9
WP_002217230.1\|311572_312241_+\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.8e-59	52.1
WP_002217228.1\|312341_312689_+	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	9.5e-33	61.2
WP_115435232.1\|312702_313758_+\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	2.9e-101	56.4
WP_002234869.1\|313754_314315_+	YmfQ family protein	A0A0M3LQE1	Mannheimia_phage	3.1e-25	39.2
WP_002234870.1\|314325_316299_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	3.7e-129	55.6
WP_002213586.1\|316864_317167_-	BrnA antitoxin family protein	A0A2H4J5Y5	uncultured_Caudovirales_phage	1.1e-05	38.8
316537:316565	attR	NA	NA	NA	NA
WP_002217222.1\|317138_317426_-	hypothetical protein	NA	NA	NA	NA
WP_002234871.1\|317505_318111_+	hypothetical protein	D0UIH2	Aggregatibacter_phage	9.2e-15	41.8
WP_002219300.1\|318089_318386_+	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	1.4e-24	61.4
WP_002222487.1\|318382_318592_+	hypothetical protein	A0A0R6PHB4	Moraxella_phage	3.1e-07	48.2

DBSCAN-SWA_23

325700 : 327563

Organic_Lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222477.1\|325700_327563_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	2.4e-106	41.1

DBSCAN-SWA_24

345579 : 346866

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581444.1\|345579_346866_-	sulfate adenylyltransferase subunit 1	A0A1V0SA87	Catovirus	1.3e-18	30.0

DBSCAN-SWA_25

355177 : 359370

Lactococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041917655.1\|355177_357568_+	ribonuclease R	Q0GXV6	Lactococcus_phage	3.2e-71	37.2
WP_002217182.1\|357906_359370_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.7e-95	41.8

DBSCAN-SWA_26

366595 : 373417

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222440.1\|366595_373417_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	8.7e-37	27.6

DBSCAN-SWA_27

378704 : 379364

Harp_seal_herpesvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061732527.1\|378704_379364_+	uracil-DNA glycosylase	A0A0R5YU95	Harp_seal_herpesvirus	9.9e-55	52.2

DBSCAN-SWA_28

383493 : 394642

Tupanvirus(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115435236.1\|383493_385413_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	4.6e-68	31.5
WP_011798904.1\|385489_385921_-	membrane protein	NA	NA	NA	NA
WP_002224514.1\|386058_387366_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_002220974.1\|387358_387793_+	hypothetical protein	NA	NA	NA	NA
WP_002213508.1\|387851_388121_-	HU family DNA-binding protein	A3E2K9	Sodalis_phage	3.8e-21	62.9
WP_002227310.1\|388302_390753_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	9.5e-212	52.2
WP_002227308.1\|391003_392107_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_115435237.1\|392134_393880_-	exodeoxyribonuclease V subunit alpha	A0A0K2FLP8	Brevibacillus_phage	2.6e-22	24.9
WP_002258219.1\|393946_394642_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	5.4e-35	43.1

DBSCAN-SWA_29

399225 : 404575

Tupanvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002224512.1\|399225_400854_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	9.0e-57	28.0
WP_002222420.1\|400925_402179_+	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	1.3e-71	41.9
WP_002215827.1\|402263_402941_+\|transposase	IS1595-like element ISNme3 family transposase	NA	NA	NA	NA
WP_002217140.1\|403153_403462_+	hypothetical protein	NA	NA	NA	NA
WP_002220958.1\|403543_404575_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.1e-07	25.3

DBSCAN-SWA_30

411421 : 425074

Staphylococcus_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221064.1\|411421_412387_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	8.0e-37	35.5
WP_002222409.1\|412535_413570_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.9e-69	43.8
WP_002222408.1\|414329_415007_+	hypothetical protein	NA	NA	NA	NA
WP_002220947.1\|414999_415593_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.4e-44	48.4
WP_002225186.1\|416990_418328_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.1e-59	37.5
WP_002213472.1\|418487_418625_-	hypothetical protein	NA	NA	NA	NA
WP_002222407.1\|419244_420555_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	3.8e-82	39.3
WP_002222168.1\|421092_422058_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.6e-37	35.5
WP_061732592.1\|422134_425074_-	type III restriction-modification system endonuclease	Q71TG1	Escherichia_phage	8.6e-276	51.7

DBSCAN-SWA_31

428459 : 433031

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061732533.1\|428459_429017_-	peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.3e-07	31.0
WP_061732532.1\|429081_429999_-	GTP-binding protein	NA	NA	NA	NA
WP_002222403.1\|430181_430454_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_002222402.1\|430450_430744_-	nucleotidyltransferase	NA	NA	NA	NA
WP_002222401.1\|430788_431265_-	transcriptional repressor	NA	NA	NA	NA
WP_061732534.1\|431335_431848_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_002232545.1\|431915_433031_-	glycerate kinase	W6LM47	Streptococcus_phage	2.1e-73	51.6

DBSCAN-SWA_32

436054 : 444441

uncultured_virus(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217091.1\|436054_436267_-	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	1.4e-10	49.3
WP_002220901.1\|436896_438333_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	2.1e-49	33.7
WP_002224501.1\|438343_439330_+	DUF459 domain-containing protein	NA	NA	NA	NA
WP_002227285.1\|439326_440520_+	hypothetical protein	Q4ZC48	Staphylococcus_virus	4.3e-08	23.7
WP_153957932.1\|440557_440758_+	hypothetical protein	NA	NA	NA	NA
WP_014581435.1\|440768_442322_+	fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	5.8e-29	26.5
WP_002237041.1\|442413_444441_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.9e-19	26.1

DBSCAN-SWA_33

454515 : 469444

Burkholderia_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222386.1\|454515_455358_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	5.7e-47	41.6
WP_002222384.1\|455372_455813_+	DUF4149 domain-containing protein	NA	NA	NA	NA
WP_002222383.1\|455860_457147_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.5e-147	62.3
WP_002213385.1\|457160_457439_+	cell division protein FtsB	NA	NA	NA	NA
WP_002217077.1\|457479_457770_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	7.5e-15	54.5
WP_033908593.1\|458014_459169_-	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	1.8e-165	75.1
WP_002213380.1\|459208_460396_-	type II restriction enzyme	E5E3X4	Burkholderia_phage	6.6e-33	38.9
WP_002222381.1\|460388_461402_-	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	8.0e-88	52.8
WP_002222380.1\|461459_463739_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.2e-309	67.6
WP_002233953.1\|464252_464579_+	hypothetical protein	NA	NA	NA	NA
WP_002227278.1\|464889_465657_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_002227277.1\|465744_466572_-	DNA-formamidopyrimidine glycosylase	F8WPX6	Bacillus_phage	7.3e-23	29.5
WP_002227276.1\|466623_467289_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_002227275.1\|467467_469444_+	LysM peptidoglycan-binding domain-containing protein	A0A0A0RVE6	Bacillus_phage	1.1e-08	38.3

DBSCAN-SWA_34

474902 : 475217

Geobacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213349.1\|474902_475217_+	integration host factor subunit beta	A0A0H3UZA0	Geobacillus_virus	2.4e-11	40.0

DBSCAN-SWA_35

479668 : 480094

Powai_lake_megavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213338.1\|479668_480094_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.9e-19	40.2

DBSCAN-SWA_36

483818 : 489919

Agrobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002225167.1\|483818_484433_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	9.8e-57	57.1
WP_002233971.1\|484528_485839_-	trigger factor	NA	NA	NA	NA
WP_115435240.1\|486046_488485_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.3e-85	47.5
WP_002245072.1\|488707_489919_+	uracil-xanthine permease	Q2WG41	Clostridium_botulinum_D_phage	8.2e-23	23.0

DBSCAN-SWA_37

494314 : 497566

Orpheovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213296.1\|494314_495265_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	5.2e-65	46.0
WP_014581429.1\|495403_497566_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.7e-196	52.5

DBSCAN-SWA_38

502607 : 506923

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222360.1\|502607_502970_-	hypothetical protein	S4TR57	Salmonella_phage	1.9e-07	37.5
WP_162819252.1\|503082_505182_-	excinuclease ABC subunit B	NA	NA	NA	NA
WP_153308396.1\|505282_505429_-	hypothetical protein	NA	NA	NA	NA
WP_061732528.1\|505438_506923_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	6.5e-22	27.2

DBSCAN-SWA_39

518365 : 520150

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002227248.1\|518365_520150_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.2e-33	25.9

DBSCAN-SWA_40

542618 : 557228

Gordonia_phage(14.29%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002239156.1\|542618_543974_-	exodeoxyribonuclease VII large subunit	A0A1B3AYB4	Gordonia_phage	1.2e-33	27.7
WP_014573949.1\|544170_544992_+	NAD(+) synthase	A0A222YW38	Synechococcus_phage	2.0e-57	49.6
WP_002213213.1\|545843_546176_+	thioredoxin TrxA	A0A1J0GW78	Streptomyces_phage	6.5e-15	41.6
WP_002222330.1\|546228_547176_-	oxidoreductase	NA	NA	NA	NA
WP_002220827.1\|547503_548892_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.1e-53	33.2
WP_009348581.1\|549166_549367_-	hypothetical protein	NA	NA	NA	NA
WP_002222329.1\|549380_549935_-	hypothetical protein	NA	NA	NA	NA
WP_002220826.1\|550019_550520_-	hypothetical protein	NA	NA	NA	NA
WP_002222328.1\|550923_552120_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.5e-29	27.8
WP_002222327.1\|552222_553467_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.3e-129	57.6
WP_002220822.1\|553657_554029_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_002222326.1\|554061_554985_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_021438889.1\|555201_555642_+	type III restriction/modification enzyme methylation subunit	NA	NA	NA	NA
WP_025458878.1\|555869_557228_+	site-specific DNA-methyltransferase	A0A2R3ZYF2	Campylobacter_phage	3.6e-51	36.0

DBSCAN-SWA_41

563554 : 567959

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213175.1\|563554_563941_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.9e-53	79.0
WP_002216984.1\|564027_564348_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.8e-23	50.5
WP_002222321.1\|564307_564529_-	alternative ribosome-rescue factor A	NA	NA	NA	NA
WP_002219110.1\|564610_565111_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_002216981.1\|565208_567959_+	DNA gyrase subunit A	A0A172JHV7	Bacillus_phage	8.8e-89	30.4

DBSCAN-SWA_42

574735 : 576181

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222316.1\|574735_576181_-	glucose-6-phosphate dehydrogenase	M4SP85	Cyanophage	3.1e-77	36.0

DBSCAN-SWA_43

582321 : 586832

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002216968.1\|582321_582882_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	2.1e-45	51.9
WP_002224462.1\|584699_586832_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	6.5e-47	29.0

DBSCAN-SWA_44

590263 : 600135

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581420.1\|590263_591262_+	calcium-binding protein	A0A2H4JEI4	uncultured_Caudovirales_phage	3.0e-23	40.9
WP_115435243.1\|592051_597199_+	iron-regulated protein frpC	A0A2H4JEI4	uncultured_Caudovirales_phage	5.4e-23	40.9
WP_002222308.1\|597531_600135_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	8.0e-15	24.0

DBSCAN-SWA_45

604912 : 606286

Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222301.1\|604912_606286_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-52	32.5

DBSCAN-SWA_46

610284 : 615458

Catovirus(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581417.1\|610284_611796_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	5.3e-88	37.1
WP_002213067.1\|611950_613204_-	divalent metal cation transporter	NA	NA	NA	NA
WP_014581416.1\|613661_615458_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	3.5e-155	47.1

DBSCAN-SWA_47

622573 : 623107

Clostridioides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002235938.1\|622573_623107_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	6.2e-23	43.4

DBSCAN-SWA_48

629601 : 641946

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222288.1\|629601_630087_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.2e-20	42.5
WP_002222287.1\|630134_630848_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_002222286.1\|630847_631516_-	O-methyltransferase	NA	NA	NA	NA
WP_002213027.1\|631526_631712_-	DUF3460 family protein	NA	NA	NA	NA
WP_002222285.1\|631855_633832_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.2e-84	31.9
WP_115435245.1\|633926_636047_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	1.2e-45	36.5
WP_002219073.1\|636126_636462_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_002213013.1\|637846_638893_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	6.2e-120	65.3
WP_002229647.1\|639113_639911_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	1.6e-19	33.8
WP_002249022.1\|639930_641946_+	DNA helicase Rep	A7KV33	Bacillus_phage	1.4e-107	36.8

DBSCAN-SWA_49

659091 : 664841

EBPR_podovirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212976.1\|659091_659616_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	1.5e-34	60.7
WP_002225104.1\|659619_661002_-	MFS transporter	NA	NA	NA	NA
WP_002212974.1\|661112_661736_-	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	3.0e-05	34.0
WP_002235017.1\|662470_662962_-\|transposase	transposase	NA	NA	NA	NA
WP_002212532.1\|663632_664841_+	replication initiation factor	B1NI77	Stenotrophomonas_phage	1.9e-27	33.5

DBSCAN-SWA_50

677134 : 679714

Cronobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581410.1\|677134_679714_+	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	3.6e-116	36.2

DBSCAN-SWA_51

686649 : 690472

Lactococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581407.1\|686649_687897_-	peptidoglycan DD-metalloendopeptidase family protein	A0A1P8BKT8	Lactococcus_phage	6.3e-10	39.8
WP_014581406.1\|688152_688899_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-59	47.7
WP_002238116.1\|688915_690472_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	3.0e-33	36.1

DBSCAN-SWA_52

699526 : 700735

Stenotrophomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212532.1\|699526_700735_+	replication initiation factor	B1NI77	Stenotrophomonas_phage	1.9e-27	33.5

DBSCAN-SWA_53

716145 : 720059

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222245.1\|716145_717000_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	8.1e-09	36.9
WP_014581404.1\|717040_718249_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	3.2e-43	32.8
WP_014581403.1\|718340_720059_+\|tRNA	arginine--tRNA ligase	A0A2K9L2F0	Tupanvirus	6.3e-85	34.8

DBSCAN-SWA_54

726635 : 727370

Bradyrhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581400.1\|726635_727370_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.3e-34	38.0

DBSCAN-SWA_55

739286 : 743561

Paenibacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086558185.1\|739286_740037_+\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_002229688.1\|740900_741347_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.2e-24	45.5
WP_014581397.1\|741401_742412_-	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA
WP_041917638.1\|742808_743561_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.3e-21	39.1

DBSCAN-SWA_56

752373 : 756269

Helicobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581392.1\|752373_754146_+	DNA primase	A0A1S5RFN0	Helicobacter_phage	8.0e-43	31.9
WP_002225051.1\|754340_756269_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.7e-30	30.5

DBSCAN-SWA_57

767167 : 770584

Only_Syngen_Nebraska_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222222.1\|767167_768802_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.1e-155	53.5
WP_002222221.1\|768913_770584_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	4.4e-35	25.9

DBSCAN-SWA_58

774393 : 776082

Escherichia_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025458612.1\|774393_776082_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	3.5e-197	60.9

DBSCAN-SWA_59

780575 : 784295

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222210.1\|780575_781202_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-24	37.6
WP_002212827.1\|781308_782127_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_002244237.1\|782385_782826_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_002225032.1\|782888_784295_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	8.3e-43	36.1

DBSCAN-SWA_60

792758 : 794486

Yellowstone_lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115435251.1\|792758_794486_-	biosynthetic-type acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.5e-57	29.9

DBSCAN-SWA_61

811602 : 823842

Klosneuvirus(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222191.1\|811602_814227_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.6e-76	36.4
WP_002218975.1\|814315_815338_-	hypothetical protein	NA	NA	NA	NA
WP_014575487.1\|815391_816561_-	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	1.6e-55	38.6
WP_072104340.1\|816906_817143_+	hypothetical protein	NA	NA	NA	NA
WP_101045608.1\|818407_819364_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.1e-25	34.4
WP_002222190.1\|819540_820485_+	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_002220519.1\|820558_821242_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_115435315.1\|821538_823842_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	7.6e-86	37.4

DBSCAN-SWA_62

828102 : 829272

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002234138.1\|828102_829272_-	O-succinylhomoserine sulfhydrylase	A0A2K9L4S9	Tupanvirus	5.7e-05	23.4

DBSCAN-SWA_63

838185 : 838623

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222174.1\|838185_838623_+	ribonuclease HI	J9Q745	Salmonella_phage	7.7e-40	55.0

DBSCAN-SWA_64

845548 : 846304

Microcystis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002227122.1\|845548_846304_+	formylglycine-generating enzyme family protein	A0A7F1	Microcystis_virus	2.3e-15	32.7

DBSCAN-SWA_65

851595 : 859534

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581382.1\|851595_852702_-	phosphoserine transaminase	M1Q1P2	Streptococcus_phage	6.2e-86	47.6
WP_002216731.1\|853066_853498_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_014581381.1\|853525_855028_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_014581380.1\|855039_857928_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.6e-19	23.1
WP_002235087.1\|858139_859534_-	DUF3482 domain-containing protein	A0A0R6PHS5	Moraxella_phage	1.5e-92	50.6

DBSCAN-SWA_66

878908 : 886531

Methanothermobacter_phage(20.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222148.1\|878908_880093_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.3e-41	33.4
WP_002222147.1\|880159_882316_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9L285	Tupanvirus	8.3e-10	35.3
WP_002212665.1\|882407_882614_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002222146.1\|882672_883290_-	guanylate kinase	U5J9X2	Bacillus_phage	7.9e-14	32.5
WP_002227106.1\|883450_884017_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	7.7e-32	45.6
WP_002222143.1\|884062_884851_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_002222142.1\|885175_886531_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-111	59.6

DBSCAN-SWA_67

896699 : 899552

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061732545.1\|896699_899552_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	2.4e-254	49.4

DBSCAN-SWA_68

903725 : 911730

Pandoravirus(20.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002227098.1\|903725_904826_+	chorismate synthase	A0A291AU41	Pandoravirus	2.9e-83	44.5
WP_002227097.1\|904917_905343_+	osmoprotectant transport activator ProQ	NA	NA	NA	NA
WP_002227096.1\|905416_907402_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	2.0e-95	35.0
WP_002220454.1\|907468_908077_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_002227094.1\|908157_909453_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	54.0
WP_002222131.1\|909530_910529_-	2-hydroxyacid dehydrogenase	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	1.2e-64	44.7
WP_002222130.1\|910653_911730_-	peptide chain release factor 1	G0YKC3	Acinetobacter_phage	6.9e-05	46.3

DBSCAN-SWA_69

916222 : 917074

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222125.1\|916222_917074_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	5.4e-21	32.7

DBSCAN-SWA_70

930019 : 930814

Microbacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222109.1\|930019_930814_-	thymidylate synthase	A0A2R4A1R4	Microbacterium_phage	7.3e-105	68.3

DBSCAN-SWA_71

970336 : 971371

Stenotrophomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222083.1\|970336_971371_+	replication protein	S0F3I3	Stenotrophomonas_phage	3.1e-23	31.8

DBSCAN-SWA_72

1005693 : 1009604

Stenotrophomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212532.1\|1005693_1006902_-	replication initiation factor	B1NI77	Stenotrophomonas_phage	1.9e-27	33.5
WP_002212532.1\|1008395_1009604_+	replication initiation factor	B1NI77	Stenotrophomonas_phage	1.9e-27	33.5

DBSCAN-SWA_73

1020651 : 1021902

Thermus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101133174.1\|1020651_1021902_+	N-acetylmuramoyl-L-alanine amidase	C8CHK8	Thermus_virus	1.0e-15	50.0

DBSCAN-SWA_74

1033941 : 1034907

Staphylococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217985.1\|1033941_1034907_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	4.7e-37	35.5

DBSCAN-SWA_75

1043620 : 1044829

Stenotrophomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212532.1\|1043620_1044829_+	replication initiation factor	B1NI77	Stenotrophomonas_phage	1.9e-27	33.5

DBSCAN-SWA_76

1059730 : 1061041

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212503.1\|1059730_1061041_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.6e-59	36.5

DBSCAN-SWA_77

1102937 : 1103603

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002235484.1\|1102937_1103603_-	beta-phosphoglucomutase	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	1.7e-09	27.4

DBSCAN-SWA_78

1108862 : 1110539

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002227014.1\|1108862_1110539_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	2.4e-41	28.5

DBSCAN-SWA_79

1117789 : 1119364

Bathycoccus_sp._RCC1105_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002212449.1\|1117789_1119364_-	inorganic phosphate transporter	E5ESL8	Bathycoccus_sp._RCC1105_virus	1.4e-38	28.1

DBSCAN-SWA_80

1135967 : 1142710

Paenibacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086558185.1\|1135967_1136719_-\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_014581337.1\|1137256_1138066_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002239498.1\|1138067_1138769_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_014581336.1\|1139237_1139972_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-24	29.2
WP_014581335.1\|1140045_1140576_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_014581334.1\|1140556_1141138_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_061386456.1\|1141134_1141671_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	7.8e-26	44.4
WP_115435264.1\|1141735_1142710_-	KpsF/GutQ family sugar-phosphate isomerase	A0A0B6VSY5	Edwardsiella_phage	8.1e-21	35.1

DBSCAN-SWA_81

1165955 : 1166930

Indivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002226981.1\|1165955_1166930_-	octaprenyl diphosphate synthase	A0A1V0SE37	Indivirus	1.5e-06	25.6

DBSCAN-SWA_82

1173657 : 1176792

Pneumococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002237610.1\|1173657_1174131_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-50	68.7
WP_002226976.1\|1174310_1174997_+	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	1.3e-62	62.3
WP_014581325.1\|1175499_1176792_-	M23 family metallopeptidase	A8ATH6	Listeria_phage	5.5e-25	46.2

DBSCAN-SWA_83

1184955 : 1186567

Erwinia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002218701.1\|1184955_1185444_-	dihydrofolate reductase	A0A1B2IBQ4	Erwinia_phage	8.4e-27	46.9
WP_002221951.1\|1185511_1186567_-	3-deoxy-7-phosphoheptulonate synthase AroG	A0A0B6VT43	Edwardsiella_phage	5.0e-85	48.5

DBSCAN-SWA_84

1205301 : 1212405

Streptococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221942.1\|1205301_1207452_+	ATP-dependent DNA helicase DinG	A0A1X9I5C8	Streptococcus_phage	4.3e-14	31.4
WP_002221941.1\|1207487_1208102_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_002226961.1\|1208382_1210251_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	6.2e-54	37.4
WP_002233479.1\|1210330_1211701_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.4e-108	45.5
WP_002215682.1\|1211772_1212405_-	TIGR00730 family Rossman fold protein	A0A1D8KU27	Synechococcus_phage	1.3e-19	36.8

DBSCAN-SWA_85

1224182 : 1227330

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581314.1\|1224182_1224965_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.6e-56	50.6
WP_002221929.1\|1225029_1227330_+	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	1.2e-78	35.6

DBSCAN-SWA_86

1231550 : 1235335

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050888735.1\|1231550_1232270_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.9e-20	45.9
WP_002235414.1\|1232323_1232650_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_014581312.1\|1232731_1233316_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_101171756.1\|1233478_1235335_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.7e-32	41.5

DBSCAN-SWA_87

1260152 : 1262360

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581306.1\|1260152_1262360_-	DNA helicase II	S5M596	Bacillus_phage	6.0e-72	31.1

DBSCAN-SWA_88

1267227 : 1268193

Staphylococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002219428.1\|1267227_1268193_+\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	2.7e-37	35.5

DBSCAN-SWA_89

1274519 : 1274756

Ralstonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002215574.1\|1274519_1274756_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	1.7e-09	42.5

DBSCAN-SWA_90

1279714 : 1288471

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115435270.1\|1279714_1281229_+	catalase	A0A2K9L0T1	Tupanvirus	1.1e-101	48.5
WP_002221883.1\|1281625_1282192_+	manganese efflux pump MntP family protein	NA	NA	NA	NA
WP_014581303.1\|1282814_1284851_-	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	5.8e-45	23.8
WP_002224809.1\|1284938_1285811_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_014581302.1\|1286080_1288471_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	A0A172JHT4	Bacillus_phage	4.5e-97	29.8

DBSCAN-SWA_91

1310639 : 1312939

Cafeteria_roenbergensis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002218599.1\|1310639_1311224_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	2.4e-28	44.5
WP_014575111.1\|1311236_1311482_+	hypothetical protein	NA	NA	NA	NA
WP_002221868.1\|1312165_1312939_-	ParA family protein	Q8JL10	Natrialba_phage	7.1e-20	30.6

DBSCAN-SWA_92

1316572 : 1317319

Flavobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002218592.1\|1316572_1317319_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.4e-20	40.4

DBSCAN-SWA_93

1330497 : 1333335

Klosneuvirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002226913.1\|1330497_1333335_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.8e-143	37.1

DBSCAN-SWA_94

1350992 : 1364730

Catovirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221846.1\|1350992_1352177_-	elongation factor Tu	A0A1V0SC62	Catovirus	6.6e-09	32.6
WP_002218568.1\|1352262_1354368_-	elongation factor G	E4ZFJ7	Streptococcus_phage	2.5e-59	27.8
WP_002215391.1\|1354386_1354857_-	30S ribosomal protein S7	NA	NA	NA	NA
WP_002218431.1\|1354974_1355346_-	30S ribosomal protein S12	NA	NA	NA	NA
WP_002215381.1\|1355524_1355674_-	DUF560 domain-containing protein	NA	NA	NA	NA
WP_002221845.1\|1355670_1355928_-	hypothetical protein	NA	NA	NA	NA
WP_002221842.1\|1356219_1360395_-	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	7.6e-76	25.3
WP_002220155.1\|1360551_1364730_-	DNA-directed RNA polymerase subunit beta	A0A0N9R0J7	Chrysochromulina_ericina_virus	2.2e-22	29.3

DBSCAN-SWA_95

1368322 : 1387330

Catovirus(12.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221846.1\|1368322_1369507_-	elongation factor Tu	A0A1V0SC62	Catovirus	6.6e-09	32.6
WP_002215364.1\|1369923_1370175_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	2.3e-20	55.7
WP_002215358.1\|1370297_1370867_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_002233408.1\|1370955_1371333_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002221836.1\|1371450_1372002_+	hypothetical protein	NA	NA	NA	NA
WP_033908460.1\|1372024_1372717_+	hypothetical protein	NA	NA	NA	NA
WP_002221835.1\|1372789_1375096_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.7e-109	39.7
WP_002215351.1\|1375167_1375629_-	DUF494 family protein	NA	NA	NA	NA
WP_061732521.1\|1375654_1376848_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.2e-31	38.1
WP_115435272.1\|1376938_1378216_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_115435273.1\|1378208_1380329_-	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	6.5e-07	23.5
WP_002216221.1\|1380328_1380928_-	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_014581289.1\|1380893_1382153_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_014581288.1\|1382231_1383158_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.3e-07	29.0
WP_002215341.1\|1383244_1383790_-	peptide deformylase	A0A2I7S809	Vibrio_phage	4.4e-16	35.3
WP_002233401.1\|1383931_1385149_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_002218543.1\|1385211_1385877_-	hypothetical protein	NA	NA	NA	NA
WP_002216215.1\|1385941_1386400_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_002215336.1\|1386409_1387330_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	3.5e-58	41.7

DBSCAN-SWA_96

1392366 : 1393938

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002243941.1\|1392366_1393938_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	5.1e-25	25.3

DBSCAN-SWA_97

1410475 : 1413066

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061732525.1\|1410475_1411015_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.3e-52	52.5
WP_061732524.1\|1411068_1411935_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	3.6e-105	64.6
WP_002236574.1\|1412040_1413066_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.0e-98	53.6

DBSCAN-SWA_98

1417587 : 1418238

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002218516.1\|1417587_1418238_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.3e-11	29.8

DBSCAN-SWA_99

1427795 : 1434918

Enterobacteria_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115435274.1\|1427795_1428815_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	5.6e-81	44.0
WP_002236574.1\|1428930_1429956_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.0e-98	53.6
WP_061732524.1\|1430061_1430928_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	3.6e-105	64.6
WP_024015112.1\|1430966_1431539_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-50	53.4
WP_002220107.1\|1431582_1433601_-	oligopeptide transporter, OPT family	NA	NA	NA	NA
WP_002220105.1\|1433796_1434918_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.3e-27	33.7

DBSCAN-SWA_100

1459311 : 1459797

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002257085.1\|1459311_1459797_-	CinA family protein	B5TK85	Pseudomonas_phage	2.7e-25	46.5

DBSCAN-SWA_101

1462858 : 1464229

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581277.1\|1462858_1464229_+	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	A0A2K9L277	Tupanvirus	2.1e-30	36.0

DBSCAN-SWA_102

1470993 : 1476033

Paramecium_bursaria_Chlorella_virus(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061374816.1\|1470993_1472832_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.5e-140	46.1
WP_014581273.1\|1472947_1475002_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	7.6e-53	28.1
WP_002220067.1\|1475079_1476033_-	D-2-hydroxyacid dehydrogenase	M1HTA3	Paramecium_bursaria_Chlorella_virus	6.2e-26	30.2

DBSCAN-SWA_103

1486846 : 1491123

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581267.1\|1486846_1488295_+	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	E3SJC4	Synechococcus_phage	5.4e-37	33.3
WP_014581266.1\|1488357_1489629_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_115435280.1\|1489669_1490119_+	CopD family copper resistance protein	NA	NA	NA	NA
WP_014581264.1\|1490151_1491123_+	TerC family protein	A0A291LBC5	Escherichia_phage	2.5e-46	36.2

DBSCAN-SWA_104

1495321 : 1495972

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002215189.1\|1495321_1495972_-	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	5.6e-26	33.7

DBSCAN-SWA_105

1500322 : 1502917

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223232.1\|1500322_1502917_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	8.2e-28	24.7

DBSCAN-SWA_106

1509041 : 1513600

Streptococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002235309.1\|1509041_1509653_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	2.8e-19	39.3
WP_014581603.1\|1509704_1510022_-	DUF4298 domain-containing protein	NA	NA	NA	NA
WP_002224204.1\|1510179_1511451_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_002220011.1\|1511484_1512087_+	L-threonylcarbamoyladenylate synthase	S4VW33	Pandoravirus	5.9e-06	30.3
WP_002217985.1\|1512634_1513600_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	4.7e-37	35.5

DBSCAN-SWA_107

1518416 : 1522866

Klosneuvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223223.1\|1518416_1519310_+	patatin-like phospholipase family protein	A0A1V0SKV5	Klosneuvirus	4.2e-08	28.6
WP_002227769.1\|1519412_1520516_+	peptide chain release factor 2	W8EDB3	Pseudomonas_phage	8.9e-08	30.2
WP_002223221.1\|1521408_1522866_-	MFS transporter	A0A0P0IY73	Acinetobacter_phage	4.1e-61	32.7

DBSCAN-SWA_108

1533758 : 1537241

Dickeya_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581601.1\|1533758_1535102_-	argininosuccinate synthase	A0A140XAJ5	Dickeya_phage	3.7e-56	82.5
WP_014581600.1\|1535414_1536215_+	competence/damage-inducible protein A	NA	NA	NA	NA
WP_002238447.1\|1536254_1537241_+	S49 family peptidase	A0A1B0WM92	Flavobacterium_phage	3.0e-07	31.2

DBSCAN-SWA_109

1561275 : 1563143

Caulobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217774.1\|1561275_1561869_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	2.8e-16	36.2
WP_002217775.1\|1561873_1562221_-	YraN family protein	NA	NA	NA	NA
WP_002217776.1\|1562267_1563143_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	2.5e-37	33.9

DBSCAN-SWA_110

1567062 : 1574245

Moumouvirus(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581594.1\|1567062_1568484_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.6e-46	32.4
WP_002223195.1\|1568566_1569346_+	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	1.2e-35	33.1
WP_014581593.1\|1569332_1569677_+	hypothetical protein	NA	NA	NA	NA
WP_002235285.1\|1569687_1570218_+	hypothetical protein	NA	NA	NA	NA
WP_002246521.1\|1570310_1571426_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002215045.1\|1571601_1572183_+	RDD family protein	NA	NA	NA	NA
WP_002227750.1\|1572244_1573099_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.7e-30	38.6
WP_002224176.1\|1573738_1574245_+	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	A0A1B1IUK5	uncultured_Mediterranean_phage	2.6e-23	39.3

DBSCAN-SWA_111

1602408 : 1607805

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223169.1\|1602408_1603233_+	DNA ligase	A0A1X9VNU1	Mimivirus	5.4e-26	30.0
WP_002223168.1\|1603301_1603865_+	hypoxanthine-guanine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	3.2e-06	34.1
WP_002214994.1\|1603947_1604385_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002219949.1\|1604453_1604723_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_002219948.1\|1604722_1606498_+	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	5.6e-12	28.5
WP_002225688.1\|1606866_1607805_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.8e-32	38.1

DBSCAN-SWA_112

1629622 : 1630306

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223156.1\|1629622_1630306_+	membrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	6.5e-25	40.3

DBSCAN-SWA_113

1640211 : 1641303

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223147.1\|1640211_1641303_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	2.1e-25	29.1

DBSCAN-SWA_114

1646640 : 1650860

Paenibacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086558185.1\|1646640_1647392_-\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_061732571.1\|1647428_1647638_-	hypothetical protein	NA	NA	NA	NA
WP_002223143.1\|1647681_1649325_-	AAA family ATPase	NA	NA	NA	NA
WP_002223142.1\|1649468_1650860_-	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	1.8e-45	31.2

DBSCAN-SWA_115

1655222 : 1672779

Clostridioides_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002219917.1\|1655222_1655978_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	4.3e-22	48.6
WP_014581586.1\|1656222_1657131_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_002227713.1\|1657198_1658653_-	magnesium transporter	NA	NA	NA	NA
WP_014581585.1\|1658884_1663357_-	autotransporter domain-containing protein	Q9LA58	Enterobacterial_phage	9.3e-80	36.9
WP_014581584.1\|1663663_1664422_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_014581583.1\|1664516_1668473_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	5.6e-113	54.6
WP_003710665.1\|1668630_1668843_-	hypothetical protein	NA	NA	NA	NA
WP_002214902.1\|1668937_1669276_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_014581582.1\|1669334_1670093_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.1e-12	28.6
WP_014574268.1\|1670175_1670802_-	hypothetical protein	NA	NA	NA	NA
WP_014581581.1\|1670846_1671821_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_002238174.1\|1671810_1672779_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.5e-43	36.5

DBSCAN-SWA_116

1680628 : 1684999

Enterobacterial_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115435285.1\|1680628_1684999_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	4.5e-79	34.0

DBSCAN-SWA_117

1688506 : 1691302

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002235242.1\|1688506_1691302_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	1.8e-73	31.4

DBSCAN-SWA_118

1698201 : 1705235

Paenibacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086558185.1\|1698201_1698952_+\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_002214868.1\|1699164_1699455_+	co-chaperone GroES	A0A221S308	uncultured_virus	7.5e-15	42.6
WP_002248549.1\|1699547_1701182_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	2.4e-174	63.0
WP_012779597.1\|1701877_1703395_+	DUF560 domain-containing protein	NA	NA	NA	NA
WP_014581577.1\|1703453_1705235_-	para-aminobenzoate synthase	S4VT78	Pandoravirus	1.2e-35	29.2

DBSCAN-SWA_119

1709690 : 1710491

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221642.1\|1709690_1710491_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.6e-25	32.4

DBSCAN-SWA_120

1715085 : 1715253

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024465111.1\|1715085_1715253_-	acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	1.6e-06	50.0

DBSCAN-SWA_121

1720466 : 1728020

Bacillus_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162819263.1\|1720466_1720913_-	GatB/YqeY domain-containing protein	G3MAQ0	Bacillus_virus	6.8e-07	31.7
WP_002214819.1\|1721044_1721257_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_002227691.1\|1721545_1723393_-	lytic transglycosylase domain-containing protein	A0A0S2SXL7	Bacillus_phage	2.5e-15	39.1
WP_160336981.1\|1723910_1724660_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.9e-34	39.8
WP_002226745.1\|1724661_1725348_+	ABC transporter permease	NA	NA	NA	NA
WP_002224121.1\|1725507_1726371_+	membrane protein	NA	NA	NA	NA
WP_002214807.1\|1726432_1727131_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_002218058.1\|1727159_1728020_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	1.1e-13	31.4

DBSCAN-SWA_122

1739584 : 1741984

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002259765.1\|1739584_1739986_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	5.1e-06	35.9
WP_101090829.1\|1740028_1740931_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_019742909.1\|1740985_1741984_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	9.5e-09	31.9

DBSCAN-SWA_123

1750825 : 1755164

Trichoplusia_ni_ascovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223073.1\|1750825_1751572_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	1.7e-15	32.7
WP_002223072.1\|1751633_1753199_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.8e-20	31.2
WP_002227678.1\|1753298_1755164_-	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	1.7e-35	26.5

DBSCAN-SWA_124

1767665 : 1768769

Rhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223059.1\|1767665_1768769_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	4.5e-52	35.4

DBSCAN-SWA_125

1773238 : 1777026

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061728247.1\|1773238_1775869_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	5.0e-182	41.2
WP_061728248.1\|1776097_1776889_+	restriction endonuclease	A0A2P0QEG9	Haloarcula_hispanica_pleomorphic_virus	5.4e-07	50.0
WP_079762054.1\|1776885_1777026_+	DNA adenine methylase	R9TL68	Synechococcus_phage	2.7e-07	55.6

DBSCAN-SWA_126

1793900 : 1794542

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223035.1\|1793900_1794542_-	orotate phosphoribosyltransferase	A0A1V0SHG3	Hokovirus	7.0e-05	28.6

DBSCAN-SWA_127

1798854 : 1799772

Gordonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217973.1\|1798854_1799772_+	tyrosine recombinase XerC	A0A1B3B212	Gordonia_phage	5.8e-13	26.8

DBSCAN-SWA_128

1805702 : 1806314

Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002225781.1\|1805702_1806314_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.3e-29	40.1

DBSCAN-SWA_129

1811946 : 1812846

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002214623.1\|1811946_1812846_+	LysR family transcriptional regulator CrgA	Q6JIH3	Burkholderia_virus	5.0e-09	23.3

DBSCAN-SWA_130

1819129 : 1820263

Halovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002223013.1\|1819129_1820263_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	7.6e-47	34.4

DBSCAN-SWA_131

1834689 : 1842306

Pseudomonas_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115435319.1\|1834689_1836570_+	acyltransferase	W6MVL2	Pseudomonas_phage	6.9e-53	34.7
WP_002223003.1\|1836632_1837928_+\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	1.2e-85	43.1
WP_002223001.1\|1838454_1839375_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_002223000.1\|1839516_1842306_+\|tRNA	isoleucine--tRNA ligase	L7Y3E1	Megavirus	1.5e-75	26.1

DBSCAN-SWA_132

1849100 : 1852535

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222991.1\|1849100_1852535_-	DNA polymerase III subunit alpha	A0A291AVG1	Streptomyces_phage	4.3e-178	35.7

DBSCAN-SWA_133

1856121 : 1859255

Megavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222987.1\|1856121_1858032_-	NADH-dependent dehydratase PglD	L7Y3T9	Megavirus	6.0e-20	27.1
WP_002222986.1\|1858079_1859255_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L470	Tupanvirus	1.2e-106	49.9

DBSCAN-SWA_134

1862412 : 1863522

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581550.1\|1862412_1863522_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-48	33.9

DBSCAN-SWA_135

1881920 : 1945982

Moraxella_phage(35.71%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222974.1\|1881920_1882985_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.4e-88	50.1
WP_002222973.1\|1883028_1883880_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_002219782.1\|1884261_1885431_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.9e-126	62.4
WP_014581546.1\|1885602_1886610_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_086558185.1\|1886825_1887577_-\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_002234261.1\|1887801_1888026_+	AAA family ATPase	B0ZSI1	Halomonas_phage	7.8e-12	54.8
WP_100199148.1\|1888038_1888446_+	chromosome partitioning protein ParA	K7R2R7	Vibrio_phage	1.3e-28	50.0
WP_002214489.1\|1888488_1888692_+	hypothetical protein	NA	NA	NA	NA
WP_086558185.1\|1888899_1889650_+\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_049776676.1\|1889730_1890876_+	cupin domain-containing protein	NA	NA	NA	NA
WP_002220746.1\|1890882_1891089_+	hypothetical protein	NA	NA	NA	NA
WP_002261717.1\|1891112_1891448_+	hypothetical protein	NA	NA	NA	NA
WP_002248022.1\|1891482_1893579_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	1.2e-32	25.8
WP_002214479.1\|1893580_1894843_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002214477.1\|1895112_1895952_-	hypothetical protein	NA	NA	NA	NA
WP_115435291.1\|1895992_1897000_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_002222967.1\|1897942_1899352_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_002222966.1\|1899516_1900083_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_002222940.1\|1900652_1901966_+	CitMHS family transporter	NA	NA	NA	NA
WP_101125614.1\|1902389_1903610_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_002214463.1\|1903643_1905137_-	ribonuclease G	NA	NA	NA	NA
WP_002221441.1\|1905349_1905607_+	glutaredoxin 3	A0A1X7BZ88	Faustovirus	9.6e-06	32.4
WP_002214461.1\|1905627_1906071_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_014581543.1\|1906156_1908199_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_002222937.1\|1909261_1910305_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_002222936.1\|1910301_1910583_-	hypothetical protein	NA	NA	NA	NA
WP_002239280.1\|1910834_1911155_+	cupin	NA	NA	NA	NA
WP_002237323.1\|1911266_1911983_+	cupin domain-containing protein	NA	NA	NA	NA
WP_002249064.1\|1911991_1912198_+	hypothetical protein	NA	NA	NA	NA
WP_002222935.1\|1912209_1912419_+	hypothetical protein	NA	NA	NA	NA
WP_002222933.1\|1912402_1912762_+	hypothetical protein	NA	NA	NA	NA
WP_162467417.1\|1913394_1913550_+	hypothetical protein	NA	NA	NA	NA
WP_002221436.1\|1913915_1914218_+	hypothetical protein	NA	NA	NA	NA
WP_002236088.1\|1914501_1914741_+	ATP-binding protein	NA	NA	NA	NA
WP_115435292.1\|1914801_1916544_+	two-partner secretion system transporter TpsB1	A0A0R6PI85	Moraxella_phage	1.8e-31	27.5
WP_115435293.1\|1916653_1922752_+	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	4.4e-64	24.0
WP_002214437.1\|1922767_1923199_+	hypothetical protein	NA	NA	NA	NA
WP_014580961.1\|1923343_1926007_+	S-layer family protein	A0A0R6PJK4	Moraxella_phage	8.7e-33	33.2
WP_002219760.1\|1926013_1926523_+	hypothetical protein	NA	NA	NA	NA
WP_025458570.1\|1926582_1928271_+	S-layer family protein	A0A0R6PJK4	Moraxella_phage	8.0e-16	51.5
WP_002217880.1\|1928279_1928657_+	hypothetical protein	NA	NA	NA	NA
WP_002224016.1\|1928934_1929309_+	hypothetical protein	NA	NA	NA	NA
WP_115435294.1\|1929343_1931149_+	hypothetical protein	NA	NA	NA	NA
WP_061726307.1\|1931151_1932087_+	immunity 49 family protein	NA	NA	NA	NA
WP_061732599.1\|1932849_1933338_+	hypothetical protein	NA	NA	NA	NA
WP_002217985.1\|1933401_1934367_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	4.7e-37	35.5
WP_002224040.1\|1942492_1942909_+	hypothetical protein	NA	NA	NA	NA
WP_002225626.1\|1942977_1943991_+	hypothetical protein	NA	NA	NA	NA
WP_002233812.1\|1943962_1944271_+	hypothetical protein	NA	NA	NA	NA
WP_002225624.1\|1944282_1944597_+	hypothetical protein	NA	NA	NA	NA
WP_014581538.1\|1944762_1945164_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_086558185.1\|1945231_1945982_+\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7

DBSCAN-SWA_136

1950515 : 1951928

Clostridioides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002227071.1\|1950515_1951928_-	Fic family protein	A0A1V0E025	Clostridioides_phage	2.3e-24	29.7

DBSCAN-SWA_137

1956016 : 1956397

Macacine_betaherpesvirus(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222952.1\|1956016_1956397_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.7e-22	60.5

DBSCAN-SWA_138

1962822 : 1963857

Stenotrophomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222083.1\|1962822_1963857_-	replication protein	S0F3I3	Stenotrophomonas_phage	3.1e-23	31.8

DBSCAN-SWA_139

1978387 : 1996828

Moraxella_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002237722.1\|1978387_1978873_-	DNA helicase	Q7Y5V9	Haemophilus_phage	1.9e-18	47.8
WP_002219732.1\|1978969_1979953_-	RepB family plasmid replication initiator protein	A0A218MNI2	uncultured_virus	9.0e-36	38.9
WP_115435320.1\|1979899_1981579_+	two-partner secretion system transporter TpsB1	A0A0R6PI85	Moraxella_phage	1.8e-31	27.5
WP_014581532.1\|1981688_1987886_+	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	4.4e-64	24.0
WP_002219725.1\|1987890_1988274_+	hypothetical protein	NA	NA	NA	NA
WP_115435295.1\|1988523_1990848_+	S-layer family protein	A0A0R6PJK4	Moraxella_phage	1.7e-40	33.9
WP_002234239.1\|1990866_1991130_+	hypothetical protein	NA	NA	NA	NA
WP_115435296.1\|1991236_1993522_+	S-layer family protein	A0A0R6PJK4	Moraxella_phage	5.5e-36	41.3
WP_002214437.1\|1993537_1993969_+	hypothetical protein	NA	NA	NA	NA
WP_115435297.1\|1994113_1996828_+	S-layer family protein	A0A0R6PJK4	Moraxella_phage	8.8e-33	33.2

DBSCAN-SWA_140

2007421 : 2012404

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002244020.1\|2007421_2007703_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.2e-07	56.0
WP_002217875.1\|2007723_2008950_-	YihY family inner membrane protein	NA	NA	NA	NA
WP_002222914.1\|2009494_2010154_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	5.4e-61	55.0
WP_002222913.1\|2010181_2010700_+	DUF1543 domain-containing protein	NA	NA	NA	NA
WP_002222912.1\|2010706_2011129_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	9.2e-22	41.0
WP_002222911.1\|2011397_2011769_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_002222910.1\|2011765_2012404_+	7-carboxy-7-deazaguanine synthase QueE	A0A1V0DYC7	Dinoroseobacter_phage	2.4e-13	34.8

DBSCAN-SWA_141

2015905 : 2082483

Staphylococcus_phage(15.38%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002214418.1\|2015905_2017405_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	8.3e-25	32.2
WP_002217860.1\|2017542_2018172_-	endonuclease III	NA	NA	NA	NA
WP_002224005.1\|2018217_2018631_-	DedA family protein	NA	NA	NA	NA
WP_002217858.1\|2019220_2020444_+	sugar MFS transporter	NA	NA	NA	NA
WP_002227587.1\|2020734_2022114_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
WP_002219709.1\|2022243_2023068_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_061728245.1\|2023069_2023585_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_002254851.1\|2023703_2024639_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_002231852.1\|2025042_2026236_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_002217852.1\|2026317_2026815_-	DNA-mimic protein DMP19	NA	NA	NA	NA
WP_002217851.1\|2026930_2027134_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_061728244.1\|2027302_2028889_-	L-lactate permease	NA	NA	NA	NA
WP_002230310.1\|2029157_2029880_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_009345706.1\|2029876_2030128_-	hypothetical protein	NA	NA	NA	NA
WP_014581529.1\|2030129_2033615_+	chromosome segregation protein SMC	NA	NA	NA	NA
WP_014581528.1\|2033779_2034826_-	alcohol dehydrogenase AdhP	A0A2K9L7I1	Tupanvirus	3.2e-23	27.4
WP_014581527.1\|2035108_2035495_-	type IV pilin protein	NA	NA	NA	NA
WP_002214393.1\|2035720_2036899_+	MacA family efflux pump subunit	A0A140XAI1	Dickeya_phage	2.3e-06	55.8
WP_002240344.1\|2036964_2038899_+	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.2e-36	40.1
WP_002214390.1\|2039216_2039999_-	DsbC family protein	NA	NA	NA	NA
WP_115435300.1\|2040137_2042327_+	primosomal protein N'	NA	NA	NA	NA
WP_061825456.1\|2043494_2044481_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	1.3e-26	34.0
WP_002214383.1\|2045514_2047443_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	9.0e-149	51.6
WP_002222886.1\|2047650_2047923_-	hypothetical protein	NA	NA	NA	NA
WP_002222885.1\|2048108_2048795_+	helix-turn-helix transcriptional regulator	A5X9F5	Aeromonas_virus	6.3e-28	36.4
WP_002219692.1\|2048926_2049265_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	4.4e-27	53.7
WP_002222884.1\|2049424_2049889_+	hypothetical protein	NA	NA	NA	NA
WP_002214375.1\|2049923_2051435_+	ubiquinone biosynthesis regulatory protein kinase UbiB	M4QMK7	Micromonas_pusilla_virus	1.7e-38	32.9
WP_002214372.1\|2051791_2052610_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_002214370.1\|2052793_2053372_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_002219688.1\|2053495_2053711_-	(Na+)-NQR maturation NqrM	NA	NA	NA	NA
WP_002222883.1\|2053736_2054792_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_002227574.1\|2055085_2056093_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_061729912.1\|2056487_2057453_-\|transposase	IS30-like element IS1655 family transposase	W5R8L2	Staphylococcus_phage	5.2e-36	35.1
WP_002222881.1\|2057623_2058841_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit F	NA	NA	NA	NA
WP_002214363.1\|2058854_2059448_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit E	NA	NA	NA	NA
WP_002214361.1\|2059451_2060078_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit D	NA	NA	NA	NA
WP_002221363.1\|2060077_2060854_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_002222880.1\|2060846_2062079_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA
WP_002236764.1\|2062081_2063425_-	Na(+)-translocating NADH-quinone reductase subunit A	NA	NA	NA	NA
WP_002222877.1\|2063774_2065196_-	sodium:proton antiporter	NA	NA	NA	NA
WP_002222875.1\|2065556_2065916_-	YbaN family protein	NA	NA	NA	NA
WP_002231938.1\|2065912_2066509_-	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_002221359.1\|2066564_2067047_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_004519544.1\|2067320_2067587_-	hypothetical protein	NA	NA	NA	NA
WP_002222873.1\|2067557_2068658_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_033908566.1\|2068804_2069206_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_002214343.1\|2069357_2070605_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_041917673.1\|2072568_2073219_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.9e-24	32.5
WP_115435301.1\|2073357_2073852_+	copper-binding protein	NA	NA	NA	NA
WP_014581524.1\|2073939_2075601_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_002222865.1\|2075730_2076273_-	peptidase C39	NA	NA	NA	NA
WP_002227566.1\|2077498_2078152_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_086558185.1\|2078658_2079410_-\|transposase	IS5-like element IS1301 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-15	36.7
WP_115435302.1\|2080050_2082483_+	calcium-binding protein	A0A2H4JEI4	uncultured_Caudovirales_phage	1.7e-19	39.0

DBSCAN-SWA_142

2091616 : 2092294

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002214312.1\|2091616_2092294_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-29	34.8

DBSCAN-SWA_143

2095314 : 2096085

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002227557.1\|2095314_2096085_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.9e-26	33.5

DBSCAN-SWA_144

2099322 : 2105827

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002227552.1\|2099322_2100432_-	histone deacetylase family protein	A0A2K9L2T7	Tupanvirus	1.8e-32	28.8
WP_002226590.1\|2100559_2100826_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.0e-10	49.4
WP_002227551.1\|2101037_2102891_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_002219655.1\|2102894_2103830_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.5e-43	35.8
WP_002217790.1\|2104052_2104322_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_002254252.1\|2104420_2104564_-	hypothetical protein	NA	NA	NA	NA
WP_002222840.1\|2104702_2105827_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-27	35.8

DBSCAN-SWA_145

2113381 : 2115766

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581520.1\|2113381_2115766_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	5.9e-174	36.1

DBSCAN-SWA_146

2123385 : 2124981

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002226578.1\|2123385_2124981_-	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	3.2e-14	35.7

DBSCAN-SWA_147

2129520 : 2130579

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002219640.1\|2129520_2130579_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.3e-27	37.6

DBSCAN-SWA_148

2135353 : 2137717

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002225519.1\|2135353_2136223_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	3.5e-68	49.1
WP_002222823.1\|2136250_2136850_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_002227538.1\|2136842_2137076_-	hypothetical protein	NA	NA	NA	NA
WP_002222820.1\|2137183_2137717_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	6.4e-20	37.7

DBSCAN-SWA_149

2151492 : 2157728

Clostridioides_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002219611.1\|2151492_2152323_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2R2ZGN5	Clostridioides_phage	6.3e-06	36.9
WP_002227534.1\|2152399_2152789_-	RidA family protein	NA	NA	NA	NA
WP_002219609.1\|2152924_2153449_-	outer membrane beta-barrel protein NspA	NA	NA	NA	NA
WP_010980824.1\|2153619_2153814_-	hypothetical protein	NA	NA	NA	NA
WP_002227533.1\|2154033_2155233_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA
WP_033910078.1\|2155265_2157728_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	1.1e-117	35.2

DBSCAN-SWA_150

2161129 : 2161750

Bacteriophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222793.1\|2161129_2161750_+	dTMP kinase	A0A1L2BX49	Bacteriophage	2.7e-30	40.2

DBSCAN-SWA_151

2172910 : 2173387

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014581517.1\|2172910_2173387_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.0e-17	40.6

DBSCAN-SWA_152

2178299 : 2179844

Mollivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222778.1\|2178299_2179844_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.8e-84	39.1

DBSCAN-SWA_153

2183742 : 2184471

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217681.1\|2183742_2184471_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-34	40.9

DBSCAN-SWA_154

2187910 : 2193271

Enterobacterial_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115435306.1\|2187910_2193271_-	IgA-specific serine endopeptidase autotransporter	Q9LA58	Enterobacterial_phage	6.1e-78	38.1

DBSCAN-SWA_155

2206008 : 2206872

Salicola_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217665.1\|2206008_2206872_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	1.5e-42	39.0

DBSCAN-SWA_156

2212279 : 2227455

uncultured_Mediterranean_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221244.1\|2212279_2213395_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.7e-87	47.0
WP_002222759.1\|2213703_2215617_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.4e-125	36.8
WP_010951024.1\|2215634_2216156_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.5e-13	34.0
WP_002232040.1\|2216302_2216500_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002214103.1\|2216512_2216872_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_002217654.1\|2217217_2218210_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	2.0e-30	35.1
WP_002222757.1\|2218392_2219451_+	DNA cytosine methyltransferase	NA	NA	NA	NA
WP_002222756.1\|2219453_2220923_+	type II restriction endonuclease	NA	NA	NA	NA
WP_002217650.1\|2220919_2221570_+	site-specific DNA-methyltransferase	Q5ZGB2	Flavobacterium_phage	1.9e-50	50.2
WP_014581513.1\|2221594_2223958_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002214080.1\|2224031_2224334_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	6.8e-11	37.4
WP_002214078.1\|2224317_2224626_+	hypothetical protein	NA	NA	NA	NA
WP_002222754.1\|2224955_2225441_+	membrane protein FxsA	NA	NA	NA	NA
WP_002227501.1\|2225700_2225940_+	hypothetical protein	NA	NA	NA	NA
WP_002229230.1\|2226153_2227455_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	7.0e-20	26.4

DBSCAN-SWA_157

2231088 : 2233668

Corynebacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002222747.1\|2231088_2231943_+	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	9.0e-08	32.8
WP_002222746.1\|2232023_2232965_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_002217634.1\|2233065_2233668_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.3e-18	33.9

DBSCAN-SWA_158

2241390 : 2248404

Staphylococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002227494.1\|2241390_2241957_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.8e-34	40.2
WP_002214042.1\|2242041_2242335_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_014580525.1\|2242463_2243414_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_002214039.1\|2243825_2244266_+	peroxiredoxin	NA	NA	NA	NA
WP_002227491.1\|2244317_2245193_+	site-specific tyrosine recombinase XerD	A0A1P8DJJ6	Virus_Rctr41k	7.5e-18	31.2
WP_002227489.1\|2245364_2245565_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_002227488.1\|2245730_2245964_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_002227487.1\|2246478_2247342_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.8e-39	40.9
WP_002227486.1\|2247540_2248404_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	8.7e-51	36.5

DBSCAN-SWA_159

2253595 : 2262263

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002217611.1\|2253595_2254528_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	6.4e-84	56.5
WP_033909161.1\|2254990_2255890_+	DMT family transporter	NA	NA	NA	NA
WP_014581510.1\|2256154_2257174_-	signal peptidase I	NA	NA	NA	NA
WP_002222735.1\|2257316_2259110_-	elongation factor 4	A0A1B0RXH7	Streptococcus_phage	1.0e-21	24.6
WP_002222734.1\|2259252_2259954_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_002222733.1\|2260139_2261252_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_002223913.1\|2261285_2262263_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	9.6e-14	34.2

DBSCAN-SWA_160

2273690 : 2277305

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115435311.1\|2273690_2277305_-	exodeoxyribonuclease V subunit beta	A0A068EQC7	Bacillus_phage	5.9e-08	20.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031333

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection