CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041379	Bacteroides intestinalis strain APC919/174 chromosome, complete genome	1 crisprs	PrimPol,DEDDh,RT,PD-DExK,csa3,WYL,DinG	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041379_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041379_1

726843-726962

Orphan

Consensus_repeat	Method
CAGCATTAAAAATAGGCAAGCTTATTTTGTACTGCTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041379_1

>merge|NZ_CP041379|1|726843-726962|CRISPRCasFinder
CAGCATTAAAAATAGGCAAGCTTATTTTGTACTGCTTTCAGTTTACATTATCTTTGCCTAAAGCGAAGATAAGCTGCACCTCAGCATTAAAAATAAGCAAGCTTATTTTGTACTGCTTTC

>NZ_CP041379|1|1|726843-726962|CRISPRCasFinder
CAGCATTAAAAATAGGCAAGCTTATTTTGTACTGCTTTC	AGTTTACATTATCTTTGCCTAAAGCGAAGATAAGCTGCACCT
CAGCATTAAAAATAAGCAAGCTTATTTTGTACTGCTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041379.1\|WP_115503059.1\|727701_728775_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP041379.1\|WP_115503061.1\|721446_723876_-\|glycoside-hydrolase-family-95-protein	unknown	unknown	gnl\|CDD\|379625
NZ_CP041379.1\|WP_021967945.1\|725775_726729_+\|acetylornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235304
NZ_CP041379.1\|WP_007660535.1\|727000_727642_+\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|275384
NZ_CP041379.1\|WP_115503060.1\|724454_725702_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP041379.1\|WP_002558970.1\|732161_732323_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NZ_CP041379.1\|WP_007660537.1\|728771_729746_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP041379.1\|WP_115503056.1\|734303_734990_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP041379.1\|WP_167507418.1\|731033_731675_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375182
NZ_CP041379.1\|WP_115503066.1\|708242_709946_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374509
NZ_CP041379.1\|WP_007659744.1\|724016_724178_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041379.1\|WP_044532889.1\|732512_733079_+\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP041379.1\|WP_115503063.1\|714416_717281_-\|beta-glucosidase	unknown	unknown	gnl\|CDD\|185053
NZ_CP041379.1\|WP_044532893.1\|731682_732066_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP041379.1\|WP_021967942.1\|720186_721422_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211417
NZ_CP041379.1\|WP_115503057.1\|733294_734284_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133016
NZ_CP041379.1\|WP_115503062.1\|717494_720092_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226156
NZ_CP041379.1\|WP_115503064.1\|712081_714406_-\|DUF5110-domain-containing-protein	unknown	unknown	gnl\|CDD\|269877
NZ_CP041379.1\|WP_021967949.1\|729819_730977_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041379.1\|WP_115503065.1\|710378_712085_-\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350096

Protein	Function_ID	Function_description	E-value
NZ_CP041379.1\|WP_115503059.1\|727701_728775_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.26135e-114
NZ_CP041379.1\|WP_115503061.1\|721446_723876_-\|glycoside-hydrolase-family-95-protein	gnl\|CDD\|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	7.41819e-97
NZ_CP041379.1\|WP_021967945.1\|725775_726729_+\|acetylornithine-carbamoyltransferase	gnl\|CDD\|235304	PRK04523, PRK04523, N-acetylornithine carbamoyltransferase; Reviewed.	5.49439e-97
NZ_CP041379.1\|WP_007660535.1\|727000_727642_+\|PASTA-domain-containing-protein	gnl\|CDD\|275384	sd00037, PASTA, PASTA domain. PASTA domain is found at the C-termini of several penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. It is a small globular domain consisting of 3 beta-sheets and an alpha-helix. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain.	1.80757e-19
NZ_CP041379.1\|WP_115503060.1\|724454_725702_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP041379.1\|WP_007660537.1\|728771_729746_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	1.11049e-134
NZ_CP041379.1\|WP_115503056.1\|734303_734990_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.06911e-78
NZ_CP041379.1\|WP_167507418.1\|731033_731675_+\|hypothetical-protein	gnl\|CDD\|375182	pfam17415, NigD_C, NigD-like C-terminal beta sandwich domain. This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroides species. Proteins in this family are typically between 234 and 260 amino acids in length. These proteins possess an N-terminal lipoprotein attachment site. The family includes NigD a protein found in the Nig operon that encodes a bacteriocin called nigrescin. It has been suggested that NigD may be the immunity protein for nigrescin (NigC) because it is directly downstream. This entry represents the C-terminal beta-sandwich domain of NigD.	4.75931e-32
NZ_CP041379.1\|WP_115503066.1\|708242_709946_-\|hypothetical-protein	gnl\|CDD\|374509	pfam16378, DUF4988, Domain of unknown function. This family around 200 residues locates in the N-terminal of some uncharacterized proteins in various Bacteroides and Alistipes species. The function of this family remains unknown. The N-terminus of this model has been clipped by ~30 residues as it was capturing parts of collagen sequences, pfam01391.	4.35758e-10
NZ_CP041379.1\|WP_002558970.1\|732161_732323_-\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	8.65886e-14
NZ_CP041379.1\|WP_044532889.1\|732512_733079_+\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.0676e-93
NZ_CP041379.1\|WP_115503063.1\|714416_717281_-\|beta-glucosidase	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	1.53843e-154
NZ_CP041379.1\|WP_021967942.1\|720186_721422_-\|hypothetical-protein	gnl\|CDD\|211417	cd11576, GH99_GH71_like_2, Uncharacterized glycoside hydrolase family 99-like domain. This family of putative glycoside hydrolases resembles glycosyl hydrolase families 71 and 99 (following the CAZY nomenclature) and may share a similar catalytic site and mechanism. The domain may co-occur with other domains involved in the binding/processing of glycans.	0
NZ_CP041379.1\|WP_115503057.1\|733294_734284_+\|glycosyltransferase	gnl\|CDD\|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	8.20605e-44
NZ_CP041379.1\|WP_115503062.1\|717494_720092_+\|hypothetical-protein	gnl\|CDD\|226156	COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms].	1.02656e-07
NZ_CP041379.1\|WP_115503064.1\|712081_714406_-\|DUF5110-domain-containing-protein	gnl\|CDD\|269877	cd06591, GH31_xylosidase_XylS, xylosidase XylS-like. XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.	2.26019e-161
NZ_CP041379.1\|WP_044532893.1\|731682_732066_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	5.27235e-26
NZ_CP041379.1\|WP_115503065.1\|710378_712085_-\|family-43-glycosylhydrolase	gnl\|CDD\|350096	cd08982, GH43-like, Glycosyl hydrolase family 43 protein; uncharacterized. This glycosyl hydrolase family 43 (GH43)-like subfamily includes uncharacterized enzymes similar to those with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	2.83278e-168

>NZ_CP041379.1|WP_021967945.1|725775_726729_+|acetylornithine-carbamoyltransferase
MKKFTCVQDIGNLKAALDEAFEIKKDRFKYVELGRNKTLMMIFFNSSLRTRLSTQKAAINLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENKEDDYNEIIINQFIKYSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYDFVITHPEGYELDPQFVGHARVEYDQMKAFEGADFIYAKNWAAYAGDNYGQILSKDREWTVSDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLESL
>NZ_CP041379.1|WP_115503060.1|724454_725702_+|glutamate-5-semialdehyde-dehydrogenase
MDLNKVFATVQEASRELLSLSDRKINQILLAVADAALAKSDFILAENKKDLERMDPKDPKYDRLKLTAERLQGIAADTRNVATLPSPVGHILKENIHPKGMRLKKISVPFGVIGIIYEARPNVSFDVFALCLKSGNACILKGGSDADYSNRAIISVIHEVLERFQVNPHIVELLPADREATAELLNARGYVDLLIPRGSSSLINFVRQNATIPVIETGAGICHTFFDRYGDVEKGAAIINNAKTRRVSVCNALDCLLIDEERLSDLPVLCAPLPDSHVIIYADTHAYDVLKGSYPTDLLKEATEEDFGTEFLDYKMSVKTVQSIHEAIAHIQKYGSKHSECIVTNDKAHAEQFCRDVDAACVYVNVPTSFTDGAQFGLGAEIGISTQKLHARGPMALEELTTYKWIIEGEGQIRE
>NZ_CP041379.1|WP_007659744.1|724016_724178_-|hypothetical-protein
MEKVAFHHGETFFPPWWKERNSTVERINVRMEKANRWKGKSIGMPKNGVSYCI
>NZ_CP041379.1|WP_115503061.1|721446_723876_-|glycoside-hydrolase-family-95-protein
MKNRLISLCLLCACCMMVKADDLKLWYKQPAKVWTEALPLGNSRLGAMVYGGVVNEQIQLNEETVWGGGPHRNDSPKALGVLPTVRELLFSGREKEAEKVIADNFFTGQHGMPFQTIGSLMLEFEGHADYSDYRRELDLEKAIASVRYKIGEVNYTRTVFTSLADNALIVRIEADKPGAVNFTTRYSTPYKEYEIKKNGKSLLLSGHGSAHEGIPGAIRFETRTQIKAEKGKVNVTNDCIEVKGADAAVIYVTAATNFVNYKDVSANETRRATEFLSQAMKRPYAQALAAHEEAYQKLFGRVSLNVGASSKEETSYRIKHFNEGKDLGLVALMFQFGRYLLISSSQPGGQPAGLQGIWNHELLAPWDGKYTININTEMNYWPAEVTNLPEMHQPLFQMVKELSESAQGTARTLYDCRGWTVHHNTDLWRMAGPVDGASYVWPLGGAWLSQHLWQHYLYTGDQAFLQTAYPALKGAADFFLDFLVEHPKYGWMVCAPSMSPEQGPPGTGTMLTAGCTMDTQIVLDALTSVLSATKLLYPDHTSYCDSLQGMIKRLPPMQIGKHNQLQEWLADVDDPNNDHRHVSHLYGLYPSNQISPYAHPQLFQAAKRSLLYRGDMATGWSIGWKINLWARLLDGDHAYTIIKNMLKLVEKGNPDGRTYPNMFDAHPPFQIDGNFGFTAGVAEMLLQSHDEALHLLPALPTAWSKGSVKGLMARGAFEVDIDWDGGELTMATVTSRIGGNLRIRSYVPLEGAGLKEAKGENPNPLMKRGDIKEPLVAEGLKAQYPILYRIYEYDIQTRPGEKYTLQRAF
>NZ_CP041379.1|WP_021967942.1|720186_721422_-|hypothetical-protein
MVKRINWFIVCMLFSIGVTAQAAGKQYNSYKGLVMAGYQGWFNAPDDGAGRGWYHYTGHDGFRPGSCTIDFWPEVSEYKKLYKTEFKFADGTPAYTFSSHDESTVDTHFRWMKEYGLDGVFMQRFVGEIRNKSGLNHFNVVLNSAMKAANKYERAICVMYDLSGMRPGDEEVLLKDIVDIAQRHALKDHAKNPSYLYHNGKPLVTIWGVGFNDRRRYGLNEAEKIINGLKSQGFSVMLGVPTHWRELNGDTESDPRLHELIKRCDVVMPWFVGRYNENSYPRYQKLIKDDIAWAKKNKVDYAPLAFPGFSWRNMKGHENSVQIPRNKGSFLWKQLSGAIKEGAEMIYVAMFDEIDEGTAIFKCAKKVPVGASTFVPIEEGIGSDHYLWLVGQAGKMLRKEKPLEMKQPERK
>NZ_CP041379.1|WP_115503062.1|717494_720092_+|hypothetical-protein
MKKTQSIIFLLLMCMRSVAQLPEYGLHIQSYPLQNSEFTSMVLEDGKPIETKGDKITLSFNLWVRPDNVFGTVFRIITENNKNIDLMYSVSENDRRFPILVTGDAVHPIQKEVRRETWTSASLTLDVKEGNITVLYDSTEINVNYTDLKGTQKLRFAFGYCPYEGFSLADVASVNLRDISIKRGLQEIRLWKMARHNKEVCYDEISHSPASGKNTRWIIDQYITWKKIHSQQFKSSPSVAFDPTVGTFYIANNKQKLYVFHTDERITDTIQVKGGEFVANYPNQLIYLPEQHQLLSYNLNENLYSFFDPASQSWKGTQAAVQEHDYWNNTLVYNPANSSLISFGGYGHYHYNNKLLICYPYEDTPQRHLNLTNIHPRYSSSSVIVDSTLYIFGGRGCPSGRQELSPRNYYDLYAVNLLTQQANKLWELTQVPDGGDFQPSENMVYDTEKKCFYFFSTQQGGTLMKIDTQTPHFELMSLPIGLKLEAQYMYTNIYYSPKQKKLYTVIHQAEVSGKADIGIYELNFPPIPISSFKQPDVVADNTSQNDQPSIWLYIIVGILVIAGMGVFYYRKKKAEINRVKTTTENNKKTETNSLQSETANGSLINDISEIKIEMPIHTETTTFHNYDFSKGCVCFFGGFHVVDKEGNDITALFTPTLKALLILLILYTGRDSKGIIGHKLIQLLWYDKTDESAKNNRNVYMSKLRGLLEKVGDIKILNQNGFWSIQFEEGTICDYLEALHLYKENNSQNLEKLLELLLHGMMLPNMETDWIDTFKNDFSNSTIDLLCRLLKREDLSETLKLKIADTLFQHDYINEEALCVKCRILCQQGKKGLAKTVYDTFCKEYAASLGTEYKFSLMEIIDEQN
>NZ_CP041379.1|WP_115503063.1|714416_717281_-|beta-glucosidase
MNLKRHLFLFAGILSCSFLMAQQPSDILSVSASTNVEKASLAFDKDQKTMWEVSGQDLKADQWLMFTIQTPGDVCELGVQMQGVSKEDLKQLMNIFVTYDPMNLGVPVDYQVQGSAKEMRLKFSPKYGAHVRLAFKGGDRVKPFMVKEVSVLLADKELKDRKGEKTSLRYMDPTLPVEERVESLLSVMTPEDKMELIREGWGIPGIPHLYVPPITKVEAVHGFSYGSGATIFPQALAMGATWNKKLTEEVAMAVGDETLSAGTMQAWSPVLDVAQDARWGRCEETFGEDPVLVSQIGGAWIKGYQSMGLYTTPKHFGGHGAPLGGRDSHDIGLSEREMREVHLVPFRHVIRNYDCQSLMMAYSDFLGVPVAKSRELLHNILREEWGFSGFIVSDCGAIGNLTARKHYTAKNKIEAANQALAAGIATNCGDTYNDKEVIQAAKDGRINMENLDEVCRTMLRMMFRNELFEKAPNKPLDWNKIYPGWNSDSHKEMARQAARESIVLLENKDNILPLSKDMRTIAVLGPGANDLQPGDYTPKLQPGQLKSVLTGIKQAVGKQTKVIYEQGCDFTSLGENNIAKAVKVASQSDVVLLVLGDCSTSEATTDVYKTSGENHDYATLILPGKQQELLEAVCATGKPVILILQAGRPYNLSKASELCKAILVNWLPGQEGGPATADVLFGDYNPAGRLPMTFPRHVGQLPLYYNFKTSGRRYEYSDMEYYPLYYFGYGLSYTSFEYSGLKIQEKENGNITVQATVKNIGQRAGDEVVQLYVTDMYASVKTRITELKDFTRIHLKPGEAKTVSFELTPYELSLLNDHMDRVVEKGAFKILVGGVSPQYVAKDRIKDSVGYADSRKGLSGMLEYTHEFAADFGLTLFKVEENLVKNQKTIWVSVKNNGTLMDTGKIEMYVGGKKVGNNVHYELAPGEEKLIPFSVDKENTDPVIFTTKYKVLSI
>NZ_CP041379.1|WP_115503064.1|712081_714406_-|DUF5110-domain-containing-protein
MRKLLAFLCICVQIVPSWGQSVLRTPNGVKVETGTTCMELECFSSSIIRVKKYPVGKTPDKQSLSVTMQPEKVKYKLQETKGEVILATSELVAIMDIAQKQVRFTDKDGKVLLAEKPSSIGFTPFNDAGNSTYQVRQTFVLDSDEAIYGLGQHQQGRMNQRNQTLFLQQANTEICIPLVHSIKGYALFWDNYSPTTFTDNAEGMTFDSAVGDLCDYYFVYGGGADGVVAGLRELTGQAPMFPLWTYGFWQSRERYVSQDELVGVVRKYRDLKIPLDGIIQDWRYWGEDHKDWNAVEFRNPKFSDPKKMMEEVHCLNAHAIISVWPSFGPETGIYAELKSQNKLMVHETFPQNNGVKVYDTYDPVARDIYWKYMNKNMFSIGMDGWWLDATEPEHGPIKEGDLDFQTYLGSFRKVRNAFPIVSVGGVYDHQRQETSDKRVFILTRSAFAGQQRYAAQAWSGDVVSDWGVLRNQIPAALNISLTGIPYWNSDIGGFFSANKFPEGVKDPAFHELYVRWMQFATFTGMMRSHGTNTPREIFMFGERGYWAFDAQEKMINLRYRLLPYIYSTSWKITSEGGSLMRALFSDFPEDKKVLDLGDEYLFGKSILVAPVTSETRSRSLYLPAGTQWIDFWTGEVQDGGREITRETPVDIIPLYVKAGAIIPVGPAVQFATEKPWDDLQLRIYPGANGEFTLYEDEDDNYNYEKGKYSTIRMTWNDKERKLTIHPRQGSYNGMLQERKFHIVFVNGQDGLGLDNESYTVNVEYQGKKINIKLP
>NZ_CP041379.1|WP_115503065.1|710378_712085_-|family-43-glycosylhydrolase
MKKLAKLVSIALVSGLISSCTSEQVSVKNDRIVTNPIDLNYRFQPNDESRREAADPVLEYFKGYYYMFASKSGGYWRSEDLAKWEYIPCTTIPTMEDYAPTILVYGDTLYFTASSGNTRIYKNAHPEKDTWEEVDTKFEYPQHDPAFFKDDDERVYFYWGCSDVDPIMGVEVDPKDGFRAIGEPKALIQHNCDKYGWEVPGKNNEEPRQGWNEGPCVLKHNGRYYLQYAAPGTQYRIYGDGNYVGDNPLGPFEYVEDNPFSFKPGGFIGGAGHGHTFKDKYGNYWHVASMTISVRHWFERRLGLFPVVVSEKYGMYALTTFADYPFWIPDRKVDFEKEDISMGWNLLSYKKKISSSSYLEGYEPELANDEQVETWWAAQTGNAGEWLQIDLGKTMEVNAIQVNFADYNFNVHAPHDPVVYQYYIEGSTNGKDWTRLVDEEKNLQDAPHKLHTLNVPAKVQYLKICNTKDMEGSFSLFDLRVFGQGGGKVPAEVTGFQASRDNNDKRIYRFTWNPQENVTGYILRWGTQKEKLTHSMVVYENQYEARYFNRDSEYYFSMSAFNENGVGK
>NZ_CP041379.1|WP_115503066.1|708242_709946_-|hypothetical-protein
MNKRFFNALLLGAVVLSTGTFVSCDNDDVDDLKSRVSVIEVAIDDIKTQLSKALMTGASITKVDESNGTYTLTLSDGQKIVIKPGGGNISIVVTDTEAIITIEGEEYILPLGSLVNSLIYSPETIDGIVEIGNTATTVNFLARPALKSLDGAEFTIAESHVLTRAADGEQFKVSGDVTLEGDFIKVPIKALGEAEAGKTYAVSLQLNLKGTIIGSNYFTVKVSDDFSSIAEDLGGVTIKADYSPQDLADGFKEMTIKGSDLLVALNFKDLFSELPANAEFVVASSGKQPGGQAQEKQELLSKSLKKDGTWAFSERPGTSFNENADRKGFLINVLADDVVKAKIYVCINDELADVDFASTFNEEYEGEWGGRTKSLALGAQVIDIQNTFTNWEEDYAEITHRGKSFLENWANANYQVQTADGETVLFCDGNTLVMDDIAKKYAQFSRGIYWYFRGISILVPEAYGKWMNPATGKEVNGGDEIVGGFNDAHREDPEVYEAGFAKYGGVTMDQKTGKITLNDTYTGYGFRFAIAAVYEYAYGWKKLHKADQFGFFFFNRRVMPEGTTIPE
>NZ_CP041379.1|WP_007660535.1|727000_727642_+|PASTA-domain-containing-protein
MTIKEFFSFRQNKFFWVNLIAMIVVVALVLFGVLKGLDIYTRHGEAVVVPNVKGMGVTEAEKMFRNQGLTCIVSDSSYVKNLPAGCILEHNPAAGQKVKEGRTIYLTINTLNVPLQIVPDVADNSSMRQAQARLLATGFKLAENEYIAGEKDWVYGVKYKGRTLTNGEKVPVGSTLTLIVGDGGALAQESDSTNTETTGSVSSGDSATDDSWF
>NZ_CP041379.1|WP_115503059.1|727701_728775_+|RluA-family-pseudouridine-synthase
MIEELPDDIAIDDDLDDVEPVGDEVQLYEHFRVVVDRGQEMMRVDKYLFDRLTNASRNRIQKSAEAGFVMANNKPVKSSYKVKPMDVITIMMDRPRYENEVIPEDIPLNIVYEDKYLMIVNKPAGLVVHPGHGNYHGTLVNAIAWHMKDNPDYDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWGIVEQDEGTIIGNIGRNPKDRMQMTVLPDDQGKHAVTHYRVLERLGYVTLVECILETGRTHQIRVHMKHIGHVLFNDERYGGHEILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHPATGEEMYFTSEMPDDMTQLIDKWRGYISNRDLE
>NZ_CP041379.1|WP_007660537.1|728771_729746_+|D-alanine--D-alanine-ligase
MKRTIAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGNKAPIDRNDFSFQVDGKKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYLKVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVKAFGEAQEVLVEAFMEGTEVTCGCYKTKKNSVVFPITEVVTENEFFDYDAKYNGQVSEITPARISDDLTHRIQTLTSAIYDILGASGIIRVDYIITAGDKINLLEVNTTPGMTATSFIPQQVRAAGLDIKDVMTDIIENQF
>NZ_CP041379.1|WP_021967949.1|729819_730977_+|hypothetical-protein
MNMEFDEIRPYHDEELPQIYEELIADPAFQQVASAVFPEVPFEALAQKMRACKTKLEFQKAFCYVILRKFSRDTTQGVTLDHTAQPEHESAYTYISNHRDIILDSGFLSVELIDKGMDTVEIAIGDNLLIYPWIKKFVRVNKSFIVQRTLTMRQMLESSGRMSRYMHHTIKDKNQSIWIAQREGRAKDSNDRTQESVLKMLAMGGEGDIIDRLTEMNIVPLAISYEYDPCDYLKAQEFQLKRDIPDYKKTQADDLKNMQTGLFGAKGHVHFQVAPCINGELAKLDRSLPKPELFSEIAALIDRNIHANYRLYPGNYIAHDSLSGTGTFAGQYTSEEKKHFMDYIDQQLARIELPNKDMPFLREKILLMYANPLTNYLATQTDNPK
>NZ_CP041379.1|WP_167507418.1|731033_731675_+|hypothetical-protein
MLLCVLVSCSDDDDYYYPSVKLDFLTAQAGADGSLQSILTDEGETLAVVEDASNTRIDANSSLRIVSNYGKATTANGESGAKLYAVLKAISPVPQPEDKFKDGIKRDPVNVLSIWMGIDYLNLMLEIKSQNKSHAFHFIEDENIKDEETGTRTVRLSLYHDDGGDVQAYTKRAYASVPLRQYAEDGINKITVYLSINTYSGKEATYEFEYNPQ
>NZ_CP041379.1|WP_044532893.1|731682_732066_+|rhodanese-like-domain-containing-protein
MNSFIAGICLFFSSLFSCQQKGDFKSVSVEDFSTLIANPEMQRLDVRTLAEYSESHIPKSININVLDKTFAEIADSTLQKDRPVALYCRSGKRSKKAAAILSEKGYVVYDLDKGFEEWKKAGKEIEE
>NZ_CP041379.1|WP_002558970.1|732161_732323_-|50S-ribosomal-protein-L34
MKRTFQPSNRKRKNKHGFRERMASANGRRVLAARRAKGRKKLTVSDEYNGVKA
>NZ_CP041379.1|WP_044532889.1|732512_733079_+|elongation-factor-P
MINAQDIKIGTCIRMDNKLYFCIDFLHVKPGKGNTFMRVKLKDVVNGYVLERRFNIGEKLEDVRVERRPYQFLYKEGEDYIFMNQETFDQHPIAHDLINGVDFLLEGSVLDVVSDASTETVLYADMPIKVQMKITYTEPGVKGDTATNTLKPATVESGATVRVPLFINEGEMIEIDTRDGSYVSRVKA
>NZ_CP041379.1|WP_115503057.1|733294_734284_+|glycosyltransferase
MRYSVIIPVYNRPDEVDELLQSLTEQSFKDFEVVIVEDGSSIPCKEVVDRYQKQLDIHYYNKPNSGPGQTRNYGAERSTGEYLIILDSDCILPKDYLAAIEKELQVTPADAFGGPDRAHGSFTDIQKAINYSMTSFFTTGGIRGGKKKMDKFYPRSFNMGVKRDVYAALGGFSKMRFGEDIDFSIRIFKGGYRCRLFPDAWVYHKRRTDLKKFFKQVHNSGIARINLYKKYPESLKVVHLLPAAFTLGVAILLLGSPFCPYSLTPIALYALLVCVDSSIQNRSLRIGIYSIAASFIQLIGYGTGFWRAWWNRCILGKDEFEAFKKNFYK
>NZ_CP041379.1|WP_115503056.1|734303_734990_+|DNA-repair-protein-RadC
MKKLTINQWAEEDRPREKMMLKGAEALSDAELLAILIGSGNTEESAVSLMQRVLSTCSNDLNQLGKWEVRDFSRFKGFGPAKSITIMAALELGKRRKLQERPERTTIRSSKDIYEIFHPLLCDLAHEEFWVLLLNQASRVIDKSRISRGGIDQTTADVRSILREALMQRATQIALIHNHPSGSPRPSTDDQRLTQLVQKGAQTMNIRLIDHVIVTDGVYYSFNDEGMI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1025836 : 1034444

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007661536.1\|1025836_1026757_+	hypothetical protein	A0A0E3FQH0	Synechococcus_phage	5.7e-16	34.7
WP_115502381.1\|1026780_1028262_-	glycosyltransferase	A0A1V0SAH6	Catovirus	2.3e-11	40.9
WP_007661534.1\|1028269_1028986_-	hypothetical protein	NA	NA	NA	NA
WP_115502380.1\|1029131_1030175_+	4-phosphoerythronate dehydrogenase PdxB	M1H502	Paramecium_bursaria_Chlorella_virus	9.6e-20	27.1
WP_007661531.1\|1030289_1030865_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.1e-24	33.9
WP_004291965.1\|1031014_1031251_+	acyl carrier protein	A0A1P8VWH3	Flavobacterium_phage	7.4e-05	35.6
WP_007661518.1\|1031270_1032536_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_044534109.1\|1032542_1033418_+	ribonuclease III	A0A167RGU4	Powai_lake_megavirus	8.6e-22	30.1
WP_022393277.1\|1033433_1034444_-	6-phosphofructokinase	H8ZJH0	Ostreococcus_tauri_virus	1.2e-11	28.2

DBSCAN-SWA_2

2825994 : 2904990

Bacillus_phage(18.18%)

tRNA,transposase,protease,integrase

attL 2885870:2885929|attR 2888328:2888484

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115502596.1\|2825994_2826756_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_115502595.1\|2826784_2827681_+	EamA family transporter	NA	NA	NA	NA
WP_115502594.1\|2827698_2828169_+	GAF domain-containing protein	NA	NA	NA	NA
WP_115502593.1\|2828219_2828876_+	DUF3256 family protein	NA	NA	NA	NA
WP_115502592.1\|2828876_2829767_-	YitT family protein	NA	NA	NA	NA
WP_115502591.1\|2829915_2831028_-	AAA family ATPase	NA	NA	NA	NA
WP_115502590.1\|2831029_2831731_-	RNA ligase family protein	A0A292GKV8	Xanthomonas_phage	1.2e-21	36.9
WP_115502589.1\|2831766_2832384_-	peptide chain release factor H	NA	NA	NA	NA
WP_115502588.1\|2832390_2833788_-	RtcB family protein	K4F7X0	Cronobacter_phage	4.1e-42	34.1
WP_044535591.1\|2834314_2834695_+\|transposase	transposase	NA	NA	NA	NA
WP_115501675.1\|2834676_2835678_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	6.4e-21	30.4
WP_115502587.1\|2836137_2837019_-	hypothetical protein	NA	NA	NA	NA
WP_007215389.1\|2837142_2837958_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_115502586.1\|2837990_2839163_-	mannonate dehydratase	NA	NA	NA	NA
WP_167507379.1\|2839492_2840365_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_115502585.1\|2841273_2842056_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-44	40.0
WP_115502584.1\|2842042_2843623_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_115502583.1\|2843869_2844931_-	hypothetical protein	NA	NA	NA	NA
WP_115502582.1\|2844936_2846154_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_007212654.1\|2846506_2847001_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.5e-26	41.0
WP_007212655.1\|2847137_2847821_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_021968389.1\|2848055_2849168_+	DNA replication and repair protein RecF	NA	NA	NA	NA
WP_007212658.1\|2849164_2849455_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_044533284.1\|2849458_2850250_-	histidinol-phosphatase	NA	NA	NA	NA
WP_115502581.1\|2850246_2850786_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_115502580.1\|2850694_2852437_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.0e-21	26.5
WP_044534672.1\|2852525_2852987_-	dCMP deaminase family protein	H6WFU3	Cyanophage	1.0e-29	46.9
WP_115502579.1\|2852991_2853510_-	DUF4847 domain-containing protein	NA	NA	NA	NA
WP_115502578.1\|2853506_2855564_-	M3 family metallopeptidase	A0A1V0SD92	Indivirus	1.4e-38	22.4
WP_115502577.1\|2855747_2856758_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_115502706.1\|2856897_2857335_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_115502576.1\|2857558_2859112_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_044155130.1\|2859169_2863480_-	hybrid sensor histidine kinase/response regulator transcription factor	W8CYM9	Bacillus_phage	3.6e-12	34.4
WP_007666569.1\|2863556_2863871_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_007666554.1\|2863892_2865299_-	glycoside hydrolase family 88 protein	NA	NA	NA	NA
WP_115502575.1\|2865327_2868534_-	hypothetical protein	NA	NA	NA	NA
WP_115502705.1\|2868627_2871957_-	hypothetical protein	NA	NA	NA	NA
WP_115502704.1\|2871989_2873816_-	rhamnogalacturonan lyase	NA	NA	NA	NA
WP_115502574.1\|2873848_2876854_-	glycoside hydrolase family 2 protein	NA	NA	NA	NA
WP_007666550.1\|2876954_2878793_-	hypothetical protein	NA	NA	NA	NA
WP_007666549.1\|2878804_2880133_-	hypothetical protein	NA	NA	NA	NA
WP_115502573.1\|2880306_2882610_-	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_115502572.1\|2882637_2885997_-	TonB-dependent receptor	NA	NA	NA	NA
2885870:2885929	attL	NA	NA	NA	NA
WP_115502571.1\|2886788_2887970_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_115502570.1\|2888259_2891403_+	TonB-dependent receptor	NA	NA	NA	NA
2888328:2888484	attR	NA	NA	NA	NA
WP_115502569.1\|2891431_2893522_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_167507380.1\|2893778_2894459_-	SGNH/GDSL hydrolase family protein	Q597U1	Lactobacillus_virus	1.1e-32	39.9
WP_115502567.1\|2894495_2896574_-	beta-galactosidase	NA	NA	NA	NA
WP_115502566.1\|2896817_2897453_+	DUF4450 domain-containing protein	NA	NA	NA	NA
WP_044155128.1\|2897449_2898871_+	glycoside hydrolase family 28 protein	B6V2Q9	Bacillus_phage	1.8e-08	24.5
WP_021967045.1\|2898928_2900056_+	glycoside hydrolase family 88 protein	NA	NA	NA	NA
WP_021967044.1\|2900182_2901460_+	rhamnogalacturonan acetylesterase	NA	NA	NA	NA
WP_044155385.1\|2901577_2902243_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_044155126.1\|2902418_2903018_+	MarC family protein	NA	NA	NA	NA
WP_044534851.1\|2903350_2903632_+	LysO family transporter	NA	NA	NA	NA
WP_007666512.1\|2903628_2904255_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_044534852.1\|2904249_2904990_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

3756512 : 3765123

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115502802.1\|3756512_3757283_+	hypothetical protein	A0A0E3Y6D2	Fusobacterium_phage	5.7e-38	52.9
WP_115502801.1\|3757279_3758188_+	hypothetical protein	H2A0A8	Bacteroides_phage	2.2e-49	37.1
WP_115502800.1\|3758184_3758679_+	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	5.3e-21	44.7
WP_115502799.1\|3758685_3759138_+	hypothetical protein	A0A2I7QSJ1	Vibrio_phage	8.4e-05	30.8
WP_115502798.1\|3759154_3759820_+	hypothetical protein	NA	NA	NA	NA
WP_115502796.1\|3760084_3761242_+	DEAD/DEAH box helicase	A0A0S2MWK8	Cellulophaga_phage	2.3e-59	36.9
WP_115503003.1\|3761247_3761715_+	recombinase	NA	NA	NA	NA
WP_115502795.1\|3762467_3763115_+	hypothetical protein	NA	NA	NA	NA
WP_115502794.1\|3763111_3763300_+	hypothetical protein	NA	NA	NA	NA
WP_115502793.1\|3763404_3765123_+	ParB N-terminal domain-containing protein	A0A0F7L836	uncultured_marine_virus	9.9e-14	29.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage