CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012211	Campylobacter jejuni strain CJ031CC45 chromosome, complete genome	2 crisprs	DEDDh,WYL,cas2,cas1,cas9,csa3	0	3	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012211_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012211_1

1268911-1268990

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012211_1

>merge|NZ_CP012211|1|1268911-1268990|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP012211|1|1|1268911-1268990|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012211.1\|WP_002855429.1\|1270785_1271322_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP012211.1\|WP_002866683.1\|1272085_1273447_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP012211.1\|WP_002866681.1\|1274637_1275822_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP012211.1\|WP_002866689.1\|1265006_1265678_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP012211.1\|WP_002855339.1\|1268510_1268837_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP012211.1\|WP_012006764.1\|1277115_1278171_-\|phosphonoacetaldehyde-reductase	unknown	unknown	gnl\|CDD\|341461
NZ_CP012211.1\|WP_032603617.1\|1264178_1265003_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP012211.1\|WP_093958685.1\|1275818_1276913_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP012211.1\|WP_002866694.1\|1259200_1260541_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP012211.1\|WP_002866685.1\|1269292_1270663_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP012211.1\|WP_002862076.1\|1271669_1272089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012211.1\|WP_002862071.1\|1267937_1268483_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP012211.1\|WP_002866688.1\|1265674_1266877_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP012211.1\|WP_012006765.1\|1278163_1279360_-\|phosphonopyruvate-decarboxylase	unknown	unknown	gnl\|CDD\|274508
NZ_CP012211.1\|WP_115786725.1\|1260843_1262685_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP012211.1\|WP_002866684.1\|1271321_1271669_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP012211.1\|WP_002866687.1\|1266879_1267878_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP012211.1\|WP_002779147.1\|1260622_1260847_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP012211.1\|WP_002866682.1\|1273443_1274565_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012211.1\|WP_002866691.1\|1262681_1264175_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654

Protein	Function_ID	Function_description	E-value
NZ_CP012211.1\|WP_002855429.1\|1270785_1271322_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NZ_CP012211.1\|WP_002866683.1\|1272085_1273447_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.31142e-79
NZ_CP012211.1\|WP_002866681.1\|1274637_1275822_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP012211.1\|WP_002866689.1\|1265006_1265678_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	5.68462e-86
NZ_CP012211.1\|WP_002855339.1\|1268510_1268837_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP012211.1\|WP_012006764.1\|1277115_1278171_-\|phosphonoacetaldehyde-reductase	gnl\|CDD\|341461	cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor, although NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes.	1.43189e-115
NZ_CP012211.1\|WP_032603617.1\|1264178_1265003_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP012211.1\|WP_093958685.1\|1275818_1276913_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	3.25114e-177
NZ_CP012211.1\|WP_002866694.1\|1259200_1260541_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	1.58203e-117
NZ_CP012211.1\|WP_002866685.1\|1269292_1270663_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP012211.1\|WP_002862071.1\|1267937_1268483_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	5.80445e-58
NZ_CP012211.1\|WP_002866688.1\|1265674_1266877_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP012211.1\|WP_012006765.1\|1278163_1279360_-\|phosphonopyruvate-decarboxylase	gnl\|CDD\|274508	TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (AEP).	1.24048e-106
NZ_CP012211.1\|WP_115786725.1\|1260843_1262685_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP012211.1\|WP_002866684.1\|1271321_1271669_+\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	4.4236e-40
NZ_CP012211.1\|WP_002866687.1\|1266879_1267878_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	5.88368e-168
NZ_CP012211.1\|WP_002779147.1\|1260622_1260847_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP012211.1\|WP_002866691.1\|1262681_1264175_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	9.26297e-155

>NZ_CP012211.1|WP_002855339.1|1268510_1268837_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP012211.1|WP_002862071.1|1267937_1268483_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP012211.1|WP_002866687.1|1266879_1267878_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKYGTQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP012211.1|WP_002866688.1|1265674_1266877_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPVQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP012211.1|WP_002866689.1|1265006_1265678_-|triose-phosphate-isomerase
MIFAVNLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVKHCGGVLIGSAALKVENFIKLIKG
>NZ_CP012211.1|WP_032603617.1|1264178_1265003_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTCALLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP012211.1|WP_002866691.1|1262681_1264175_-|hydrogenase-small-subunit
MAKLSNEELKNILEGRIKKLENSILKEDKVVNEESVKILAKHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKVGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS
>NZ_CP012211.1|WP_115786725.1|1260843_1262685_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALANGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLYIAKILLN
>NZ_CP012211.1|WP_002779147.1|1260622_1260847_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP012211.1|WP_002866694.1|1259200_1260541_+|MmgE/PrpD-family-protein
MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTDKNTPIWVNDQKLVPIYAAMLDGIASHALDFDDTHTEAILHASAILTPLCLSYGFHVNKDAKKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHFAKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELSKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLDSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP012211.1|WP_002866685.1|1269292_1270663_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDEIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFDDIKARLKN
>NZ_CP012211.1|WP_002855429.1|1270785_1271322_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP012211.1|WP_002866684.1|1271321_1271669_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKNFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP012211.1|WP_002862076.1|1271669_1272089_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NZ_CP012211.1|WP_002866683.1|1272085_1273447_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYILGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEDFVPDVVGRLTVRSANGMRIKFSKREL
>NZ_CP012211.1|WP_002866682.1|1273443_1274565_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIEADLSKIEKKEQFPFFKISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANVIIDKLKRNESKQDYELILVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP012211.1|WP_002866681.1|1274637_1275822_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELEIEVWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQDIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEQTILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPILVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP012211.1|WP_093958685.1|1275818_1276913_-|capsular-polysaccharide-biosynthesis-protein
MFGFSLWKRHFIKPFFKAKDNEIIFLNSIKSLLRYKLKDDDKFFIWGKRIDYNTLKSTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKPSKLEELLQNEIFDENILNRAKNIIKILLENRFSKYNGLKHENLKINAKIGQKVILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYKCKRRTRKLSLEELVAGVLITYPRYINPKTKTLCEIEVCLDIMLNLQKDYFSKKHIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP012211.1|WP_012006764.1|1277115_1278171_-|phosphonoacetaldehyde-reductase
MSDFRYYNPVKINFNVSYEHIIDSLKTDSILLLTSKSFYKKGLTKILEDKLGDRLKGVIYDILPNPEINYAELIKKDYRNYKEIIAFGGGSVLDMAKYFSVSGDVIRNGGNLDISNSCSFIPIFAIPTTAGTSSELTKWATLWDTPNNIKFSLSDENLYCKEAFYDPNLFLNIPRELTIYTALDALSHSIESIWNKNSNAISTNHAIKAIELILEYLPRLQNDLNSKELRLKIILASIYAGLAFSNTQTALAHAISYPITMKLGISHGLACSFTIPILLQCIDDVKINKLLSIYKEKIISLFHILNISTNLKSYGITKQFIEDIFDNLNSRAKNGMFDLELTKKRFLLCIK
>NZ_CP012211.1|WP_012006765.1|1278163_1279360_-|phosphonopyruvate-decarboxylase
MLNMEFFGEALKTIGCFQFSGVPCSYLSPMINYAINENSFIMSNNEGDAIAIATGISLANMEKKDNFGVVLMQNSGLSNALSPLTSLNYTFEIPILGFVSLRGERDDQDRNTDEPQHELLGTITDRLLETCNIAYDFLSPDYNQAIRQLQIAHKYLKQQKSYFFIVKNNTFEKCSLKNFNIPVKNIGREIIQQENSLAEFQPKRIEILECIANFSYKNNIALFATTGKTGRELYEIRDTENQLYMVGSMGCVSSLALGVSLQNSKKIIAIDGDSALLMRMGALTTNAYYTKNNNKGNFCHILLDNESHDSTGGQFNLSPFINFPQIAHFCGYEKIFIINSLDDLIQALDFFIARKEGGAVFIYVKILKGSKGKLGRPKITPKEVALRIAQFLNRKSDE

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Crispr_ID: NZ_CP012211_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012211_2

1371928-1372094

TypeII

Consensus_repeat	Method
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder

2 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP012211_2

>merge|NZ_CP012211|2|1371928-1372094|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGATTTATTAGTAACCCATCAAGTTGGCTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCTTTTAAGATTTTATATACACCTGAGCTCAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP012211|2|2|1371928-1372094|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGATTTATTAGTAACCCATCAAGTTGGCTTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTTTTAAGATTTTATATACACCTGAGCTCAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012211.1\|WP_002877301.1\|1381606_1382341_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP012211.1\|WP_002867060.1\|1368405_1369947_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP012211.1\|WP_002780988.1\|1372239_1372671_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP012211.1\|WP_022552433.1\|1363146_1365951_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP012211.1\|WP_012006785.1\|1366116_1366830_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP012211.1\|WP_002867071.1\|1380280_1380886_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP012211.1\|WP_002877469.1\|1367133_1368282_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP012211.1\|WP_002867075.1\|1382337_1383375_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP012211.1\|WP_002855824.1\|1361579_1362512_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP012211.1\|WP_002867072.1\|1380882_1381632_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP012211.1\|WP_002779495.1\|1378193_1379171_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340821
NZ_CP012211.1\|WP_002851537.1\|1365950_1366142_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP012211.1\|WP_002867062.1\|1370170_1370617_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP012211.1\|WP_002851264.1\|1362508_1363150_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP012211.1\|WP_002867064.1\|1372663_1373554_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP012211.1\|WP_002867063.1\|1370620_1371811_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP012211.1\|WP_002867061.1\|1369948_1370170_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP012211.1\|WP_012006786.1\|1373550_1376505_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP012211.1\|WP_002867070.1\|1379230_1380220_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP012211.1\|WP_012006787.1\|1376711_1378169_+\|anaerobic-C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl\|CDD\|225611

Protein	Function_ID	Function_description	E-value
NZ_CP012211.1\|WP_002877301.1\|1381606_1382341_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.2203e-99
NZ_CP012211.1\|WP_002867060.1\|1368405_1369947_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.1439e-117
NZ_CP012211.1\|WP_002780988.1\|1372239_1372671_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.96465e-59
NZ_CP012211.1\|WP_022552433.1\|1363146_1365951_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP012211.1\|WP_012006785.1\|1366116_1366830_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000581315
NZ_CP012211.1\|WP_002867071.1\|1380280_1380886_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.80993e-71
NZ_CP012211.1\|WP_002877469.1\|1367133_1368282_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP012211.1\|WP_002867075.1\|1382337_1383375_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.51502e-33
NZ_CP012211.1\|WP_002855824.1\|1361579_1362512_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.52433e-86
NZ_CP012211.1\|WP_002867072.1\|1380882_1381632_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.20349e-93
NZ_CP012211.1\|WP_002779495.1\|1378193_1379171_-\|hypothetical-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.05794e-09
NZ_CP012211.1\|WP_002851537.1\|1365950_1366142_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP012211.1\|WP_002867062.1\|1370170_1370617_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.04214e-42
NZ_CP012211.1\|WP_002851264.1\|1362508_1363150_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP012211.1\|WP_002867064.1\|1372663_1373554_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.27175e-120
NZ_CP012211.1\|WP_002867063.1\|1370620_1371811_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	1.19384e-142
NZ_CP012211.1\|WP_002867061.1\|1369948_1370170_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP012211.1\|WP_012006786.1\|1373550_1376505_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP012211.1\|WP_002867070.1\|1379230_1380220_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP012211.1\|WP_012006787.1\|1376711_1378169_+\|anaerobic-C4-dicarboxylate-transporter-DcuC	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	2.86452e-71

>NZ_CP012211.1|WP_002867063.1|1370620_1371811_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDIIFMP
>NZ_CP012211.1|WP_002867062.1|1370170_1370617_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDDISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP012211.1|WP_002867061.1|1369948_1370170_+|MoaD/ThiS-family-protein
MIKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP012211.1|WP_002867060.1|1368405_1369947_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGKERIYHFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP012211.1|WP_002877469.1|1367133_1368282_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKVFKEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN
>NZ_CP012211.1|WP_012006785.1|1366116_1366830_-|hypothetical-protein
MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIAMAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP012211.1|WP_002851537.1|1365950_1366142_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP012211.1|WP_022552433.1|1363146_1365951_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAYYVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP012211.1|WP_002851264.1|1362508_1363150_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP012211.1|WP_002855824.1|1361579_1362512_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVASLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP012211.1|WP_002780988.1|1372239_1372671_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP012211.1|WP_002867064.1|1372663_1373554_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIGQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP012211.1|WP_012006786.1|1373550_1376505_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKSEILKAIKQNEEKLVNYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCITQSFLKDELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINILNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKILNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAEIECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKLSDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPEKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAAIIAYANNSIVKAFSDFKKEQESNSVELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP012211.1|WP_012006787.1|1376711_1378169_+|anaerobic-C4-dicarboxylate-transporter-DcuC
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPRCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIAVSLNNK
>NZ_CP012211.1|WP_002779495.1|1378193_1379171_-|hypothetical-protein
MKNIVFHSDGFGDLLVCFKALYAIKQLYPEYKLFLLTNGLMESDFLEKIPFIDEVLIYKDDFLEKIQSKNPVIFITTRRQGLYFKKLKFLNVQKCIVFPHLISIISKNLTTPLPFFRAKKHMSEIVLKLVRMINTRHFDKNFNQIDFSKIKNLLPYDARLSDNFFKQIDTKYEKIIGINAFSNNSEYRGFNFFIKDWIGLARQLSLKYPKFLFILLNFSTNSIQYNIDQNANLKVFCNNKNIASLVSISQKLDFLITVDTGNLHLCDILQIPTLAFTSSLAAYRFGGGSYGGRFDKLIVKPAWQKEYRKIYEIFTKKAENNLENL
>NZ_CP012211.1|WP_002867070.1|1379230_1380220_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATVKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPSGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP012211.1|WP_002867071.1|1380280_1380886_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENALELEKIFSPFSLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP012211.1|WP_002867072.1|1380882_1381632_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFS
>NZ_CP012211.1|WP_002877301.1|1381606_1382341_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFAADDLKSGFGEEYYKLDIDQKRQIFFTKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP012211.1|WP_002867075.1|1382337_1383375_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012211_2	2.1\|1371963\|31\|NZ_CP012211\|CRISPRCasFinder	1371963-1371993	31	NZ_CP014746	Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence	12709-12739	0	1.0
NZ_CP012211_2	2.1\|1371963\|31\|NZ_CP012211\|CRISPRCasFinder	1371963-1371993	31	CP013734	Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence	5197-5227	1	0.968
NZ_CP012211_2	2.1\|1371963\|31\|NZ_CP012211\|CRISPRCasFinder	1371963-1371993	31	NZ_CP007184	Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence	13126-13156	2	0.935
NZ_CP012211_2	2.2\|1372029\|31\|NZ_CP012211\|CRISPRCasFinder	1372029-1372059	31	MN530981	Campylobacter phage DA10, complete genome	20070-20100	2	0.935
NZ_CP012211_2	2.1\|1371963\|31\|NZ_CP012211\|CRISPRCasFinder	1371963-1371993	31	NC_008770	Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence	4559-4589	3	0.903
NZ_CP012211_2	2.1\|1371963\|31\|NZ_CP012211\|CRISPRCasFinder	1371963-1371993	31	NZ_CP010074	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence	10105-10135	3	0.903
NZ_CP012211_2	2.1\|1371963\|31\|NZ_CP012211\|CRISPRCasFinder	1371963-1371993	31	NC_017284	Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence	4556-4586	4	0.871
NZ_CP012211_1	1.1\|1268934\|34\|NZ_CP012211\|CRISPRCasFinder	1268934-1268967	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.1|1371963|31|NZ_CP012211|CRISPRCasFinder matches to NZ_CP014746 (Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence) position: , mismatch: 0, identity: 1.0

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacccatcaagttggcttg	Protospacer
*******************************

2. spacer 2.1|1371963|31|NZ_CP012211|CRISPRCasFinder matches to CP013734 (Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence) position: , mismatch: 1, identity: 0.968

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacccatcaagttggctta	Protospacer
******************************.

3. spacer 2.1|1371963|31|NZ_CP012211|CRISPRCasFinder matches to NZ_CP007184 (Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence) position: , mismatch: 2, identity: 0.935

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacacatcaagttggctta	Protospacer
*************** **************.

4. spacer 2.2|1372029|31|NZ_CP012211|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.935

cttttaagattttatatacacctgagctcag	CRISPR spacer
cttttaagattttatatatacctgagctaag	Protospacer
******************.********* **

5. spacer 2.1|1371963|31|NZ_CP012211|CRISPRCasFinder matches to NC_008770 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence) position: , mismatch: 3, identity: 0.903

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacacatcaagttgggtta	Protospacer
*************** *********** **.

6. spacer 2.1|1371963|31|NZ_CP012211|CRISPRCasFinder matches to NZ_CP010074 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence) position: , mismatch: 3, identity: 0.903

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacacatcaagttgggtta	Protospacer
*************** *********** **.

7. spacer 2.1|1371963|31|NZ_CP012211|CRISPRCasFinder matches to NC_017284 (Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence) position: , mismatch: 4, identity: 0.871

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacacatcaagttgggcta	Protospacer
*************** *********** .*.

8. spacer 1.1|1268934|34|NZ_CP012211|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1413203 : 1444438

Campylobacter_phage(52.0%)

head,plate,transposase,tail,integrase,terminase

attL 1433090:1433107|attR 1444604:1444621

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115786730.1\|1413203_1413833_+	LexA family transcriptional regulator	A7YGK7	Campylobacter_phage	2.6e-60	100.0
WP_002865000.1\|1413913_1414234_+	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_002843339.1\|1414243_1414438_+	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865289.1\|1414517_1414805_+	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
WP_115786731.1\|1414834_1415650_-	DNA adenine methylase	A7YGI9	Campylobacter_phage	9.1e-151	98.9
WP_002865687.1\|1415751_1416720_-\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	4.3e-14	26.8
WP_002789964.1\|1416713_1416905_-\|tail	tail protein	NA	NA	NA	NA
WP_002870151.1\|1416897_1417272_-\|tail	tail protein	NA	NA	NA	NA
WP_002876455.1\|1417273_1419238_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002870149.1\|1419267_1419498_+	hypothetical protein	NA	NA	NA	NA
WP_002789979.1\|1419605_1419842_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002865794.1\|1419852_1420368_-\|tail	tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
WP_085782109.1\|1420490_1421681_-\|tail	phage tail sheath family protein	A7YGY2	Campylobacter_phage	3.8e-198	98.2
WP_085782110.1\|1421699_1422707_-	hypothetical protein	A7YGZ7	Campylobacter_phage	7.2e-190	98.8
WP_002878908.1\|1422703_1423090_-	DUF1353 domain-containing protein	A7YGA5	Campylobacter_phage	1.2e-65	97.5
WP_002924980.1\|1423086_1423593_-	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	5.7e-87	99.4
WP_085782111.1\|1423617_1424649_-\|tail	phage tail protein	A7YG81	Campylobacter_phage	4.5e-187	98.5
WP_002934177.1\|1424648_1425269_-\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	2.8e-59	97.4
WP_002934176.1\|1425366_1426533_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	2.2e-12	25.5
WP_002934175.1\|1426529_1426820_-\|plate	baseplate assembly protein	V5YTB2	Pseudomonas_phage	3.0e-08	39.5
WP_002784486.1\|1426816_1427008_-	hypothetical protein	NA	NA	NA	NA
WP_002873732.1\|1427016_1427649_-\|plate	phage baseplate assembly protein V	A0A0F7LDY9	Escherichia_phage	6.0e-09	31.4
WP_002901330.1\|1427645_1428110_-	DUF1804 family protein	NA	NA	NA	NA
WP_002790001.1\|1428240_1429281_+	hypothetical protein	NA	NA	NA	NA
WP_002790002.1\|1429280_1430168_+\|head	head protein	A0A2K9VH18	Faecalibacterium_phage	3.5e-63	43.7
WP_019108985.1\|1430167_1430437_+	hypothetical protein	NA	NA	NA	NA
WP_002790896.1\|1430433_1430787_+	hypothetical protein	NA	NA	NA	NA
WP_002790266.1\|1430783_1431149_+	hypothetical protein	NA	NA	NA	NA
WP_115786732.1\|1431138_1431528_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	6.5e-22	45.9
WP_002854893.1\|1431538_1431880_+	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|1431876_1432125_+	hypothetical protein	NA	NA	NA	NA
WP_002790261.1\|1432236_1432551_+	hypothetical protein	NA	NA	NA	NA
WP_002865465.1\|1432640_1434167_+\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
1433090:1433107	attL	NA	NA	NA	NA
WP_002870186.1\|1434163_1435546_+	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	8.2e-11	22.7
WP_002870187.1\|1435538_1436672_+	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_002913855.1\|1436810_1437290_-	hypothetical protein	A7YGZ0	Campylobacter_phage	2.3e-05	29.6
WP_115786733.1\|1437276_1437468_-	hypothetical protein	NA	NA	NA	NA
WP_002790255.1\|1437519_1437948_-	hypothetical protein	NA	NA	NA	NA
WP_002864977.1\|1437944_1438124_-	hypothetical protein	NA	NA	NA	NA
WP_052797554.1\|1438237_1438645_-	hypothetical protein	A0A2R3ZY25	Campylobacter_phage	5.9e-34	54.1
WP_002938698.1\|1438655_1439087_-	hypothetical protein	NA	NA	NA	NA
WP_042962965.1\|1439083_1439356_-	hypothetical protein	NA	NA	NA	NA
WP_002872701.1\|1439427_1439913_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	6.4e-19	33.3
WP_052777360.1\|1440108_1440447_-	hypothetical protein	NA	NA	NA	NA
WP_002865075.1\|1440520_1440952_-	hypothetical protein	NA	NA	NA	NA
WP_002824157.1\|1441007_1441193_-	hypothetical protein	NA	NA	NA	NA
WP_002791422.1\|1441189_1441381_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002790751.1\|1441377_1442235_-	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	9.6e-26	31.2
WP_085782113.1\|1442323_1444438_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
1444604:1444621	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012211

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection