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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012214 Campylobacter jejuni strain CJ088CC52 chromosome, complete genome 2 crisprs DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3 0 5 128 0

Results visualization

1. NZ_CP012214
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012214_1 1271586-1271665 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012214_2 1374620-1374792 TypeII NA
2 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012214_2 2.1|1374657|29|NZ_CP012214|CRISPRCasFinder 1374657-1374685 29 MN530981 Campylobacter phage DA10, complete genome 12856-12884 1 0.966
NZ_CP012214_2 2.3|1374663|25|NZ_CP012214|PILER-CR 1374663-1374687 25 MN530981 Campylobacter phage DA10, complete genome 12860-12884 1 0.96
NZ_CP012214_2 2.2|1374723|29|NZ_CP012214|CRISPRCasFinder 1374723-1374751 29 MN530981 Campylobacter phage DA10, complete genome 19435-19463 2 0.931
NZ_CP012214_2 2.4|1374729|28|NZ_CP012214|PILER-CR 1374729-1374756 28 MN530981 Campylobacter phage DA10, complete genome 19436-19463 2 0.929
NZ_CP012214_1 1.1|1271609|34|NZ_CP012214|CRISPRCasFinder 1271609-1271642 34 MH752385 Bacillus phage Ray17, complete genome 8509-8542 10 0.706

1. spacer 2.1|1374657|29|NZ_CP012214|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

tgattgaagtgtagtaaaggctgtagcac	CRISPR spacer
tgattgaagtgtggtaaaggctgtagcac	Protospacer
************.****************

2. spacer 2.3|1374663|25|NZ_CP012214|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.96

tgaagtgtagtaaaggctgtagcac	CRISPR spacer
tgaagtgtggtaaaggctgtagcac	Protospacer
********.****************

3. spacer 2.2|1374723|29|NZ_CP012214|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.931

tatactctaaaggctctccctcccacacg	CRISPR spacer
tatactctaaaggttctccttcccacacg	Protospacer
*************.*****.*********

4. spacer 2.4|1374729|28|NZ_CP012214|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.929

atactctaaaggctctccctcccacacg	CRISPR spacer
atactctaaaggttctccttcccacacg	Protospacer
************.*****.*********

5. spacer 1.1|1271609|34|NZ_CP012214|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 3466 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_2 8753 : 12671 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 17829 : 21419 5 Bacillus_thuringiensis_phage(50.0%) NA NA
DBSCAN-SWA_4 32126 : 34880 4 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 38426 : 46323 8 Synechococcus_phage(20.0%) NA NA
DBSCAN-SWA_6 53705 : 59711 4 Tupanvirus(25.0%) protease,tRNA NA
DBSCAN-SWA_7 63166 : 75629 14 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_8 84704 : 85463 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_9 96840 : 100596 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_10 109225 : 111034 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_11 133169 : 134066 1 Citrobacter_phage(100.0%) NA NA
DBSCAN-SWA_12 141592 : 142390 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_13 147234 : 147930 1 Sphenicid_alphaherpesvirus(100.0%) NA NA
DBSCAN-SWA_14 158080 : 162067 5 Streptococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_15 174491 : 175253 1 Escherichia_phage(100.0%) tRNA NA
DBSCAN-SWA_16 188978 : 191594 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_17 196853 : 197708 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_18 202367 : 203456 1 Acanthamoeba_polyphaga_moumouvirus(100.0%) NA NA
DBSCAN-SWA_19 207597 : 208851 1 Bacillus_virus(100.0%) protease NA
DBSCAN-SWA_20 216190 : 219986 3 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_21 224876 : 237864 16 uncultured_Mediterranean_phage(12.5%) tRNA NA
DBSCAN-SWA_22 241386 : 245509 4 Bovine_gammaherpesvirus(50.0%) NA NA
DBSCAN-SWA_23 253393 : 258883 8 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_24 262832 : 275347 9 uncultured_virus(25.0%) NA NA
DBSCAN-SWA_25 289694 : 292817 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_26 297116 : 302738 6 Ralstonia_phage(33.33%) NA NA
DBSCAN-SWA_27 306239 : 307516 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_28 311378 : 312614 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_29 322793 : 325540 2 Catovirus(50.0%) tRNA NA
DBSCAN-SWA_30 330429 : 332421 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_31 346187 : 349178 4 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_32 355610 : 356354 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_33 366896 : 370152 5 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_34 378249 : 380516 2 Mamastrovirus(50.0%) NA NA
DBSCAN-SWA_35 384767 : 387360 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_36 390744 : 399427 2 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_37 409932 : 415374 6 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_38 420217 : 436619 14 Tupanvirus(28.57%) tRNA NA
DBSCAN-SWA_39 448976 : 450140 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_40 457007 : 458717 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_41 472035 : 478290 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_42 485167 : 491530 7 Staphylococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_43 497125 : 504945 10 Pseudomonas_phage(25.0%) NA NA
DBSCAN-SWA_44 517438 : 519364 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_45 522914 : 528769 6 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_46 544301 : 546236 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_47 551189 : 554044 3 uncultured_Caudovirales_phage(50.0%) tRNA NA
DBSCAN-SWA_48 558673 : 561073 3 Pasteurella_phage(33.33%) NA NA
DBSCAN-SWA_49 565032 : 569012 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_50 572711 : 574031 1 Erwinia_phage(100.0%) protease NA
DBSCAN-SWA_51 577042 : 577771 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_52 598266 : 602019 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_53 612866 : 614120 1 Phage_TP(100.0%) NA NA
DBSCAN-SWA_54 618608 : 619361 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_55 625588 : 629191 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_56 639920 : 640910 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_57 651694 : 658954 6 Helicobacter_phage(33.33%) transposase NA
DBSCAN-SWA_58 664519 : 666788 3 Hokovirus(33.33%) tRNA NA
DBSCAN-SWA_59 671608 : 678436 4 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_60 687138 : 690349 3 Vibrio_phage(33.33%) tRNA NA
DBSCAN-SWA_61 701133 : 710030 9 Terra1_virus(20.0%) tRNA NA
DBSCAN-SWA_62 716204 : 725667 11 Chrysochromulina_ericina_virus(20.0%) tRNA NA
DBSCAN-SWA_63 732028 : 736346 5 Hokovirus(66.67%) tRNA NA
DBSCAN-SWA_64 748643 : 749492 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_65 753405 : 756807 3 Acinetobacter_phage(50.0%) integrase attL 751364:751380|attR 764364:764380
DBSCAN-SWA_66 763362 : 764409 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_67 767521 : 778555 6 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_68 785265 : 792118 9 Orpheovirus(33.33%) tRNA NA
DBSCAN-SWA_69 795246 : 796569 2 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_70 801473 : 814589 15 Hokovirus(20.0%) NA NA
DBSCAN-SWA_71 834360 : 843813 10 Acanthocystis_turfacea_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_72 860429 : 860957 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_73 873245 : 875764 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_74 879184 : 890707 10 Vibrio_phage(25.0%) protease,tRNA NA
DBSCAN-SWA_75 895335 : 896788 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_76 905628 : 916505 7 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_77 927561 : 930958 5 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_78 937867 : 944737 5 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_79 949558 : 952817 3 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_80 962917 : 963820 1 Rhodococcus_phage(100.0%) NA NA
DBSCAN-SWA_81 966846 : 988532 20 Staphylococcus_phage(27.27%) protease,tRNA NA
DBSCAN-SWA_82 991842 : 997822 5 Bathycoccus_sp._RCC1105_virus(33.33%) protease NA
DBSCAN-SWA_83 1006621 : 1009296 2 Aureococcus_anophage(50.0%) NA NA
DBSCAN-SWA_84 1015802 : 1033458 18 uncultured_virus(22.22%) NA NA
DBSCAN-SWA_85 1038654 : 1049016 13 Catovirus(20.0%) tRNA NA
DBSCAN-SWA_86 1052110 : 1061969 8 Salmonella_phage(40.0%) tRNA NA
DBSCAN-SWA_87 1073602 : 1074469 1 uncultured_phage(100.0%) NA NA
DBSCAN-SWA_88 1082019 : 1097317 16 uncultured_virus(20.0%) protease NA
DBSCAN-SWA_89 1101954 : 1102776 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_90 1114620 : 1116156 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_91 1128444 : 1130394 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_92 1138245 : 1148363 9 uncultured_Caudovirales_phage(25.0%) tRNA NA
DBSCAN-SWA_93 1157927 : 1164916 7 Tupanvirus(25.0%) tRNA NA
DBSCAN-SWA_94 1173888 : 1192221 19 uncultured_Mediterranean_phage(42.86%) tRNA NA
DBSCAN-SWA_95 1206907 : 1207915 1 Moraxella_phage(100.0%) tRNA NA
DBSCAN-SWA_96 1214464 : 1217116 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_97 1227151 : 1228159 1 Dinoroseobacter_phage(100.0%) NA NA
DBSCAN-SWA_98 1233810 : 1235607 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_99 1239177 : 1240497 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_100 1244777 : 1245380 1 Cassava_brown_streak_virus(100.0%) NA NA
DBSCAN-SWA_101 1254732 : 1256157 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_102 1260499 : 1261867 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_103 1266852 : 1267677 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_104 1271966 : 1276119 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_105 1280556 : 1281820 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_106 1288254 : 1294324 7 Synechococcus_phage(28.57%) NA NA
DBSCAN-SWA_107 1299248 : 1306425 7 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_108 1327385 : 1328798 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_109 1338152 : 1340519 1 Campylobacter_virus(100.0%) NA NA
DBSCAN-SWA_110 1347886 : 1351835 5 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_111 1360374 : 1362477 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_112 1380878 : 1390887 10 Cyanophage(20.0%) NA NA
DBSCAN-SWA_113 1397005 : 1406498 7 Powai_lake_megavirus(20.0%) NA NA
DBSCAN-SWA_114 1427324 : 1427990 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_115 1435425 : 1437057 1 Aureococcus_anophage(100.0%) NA NA
DBSCAN-SWA_116 1442855 : 1447416 5 Cellulophaga_phage(50.0%) NA NA
DBSCAN-SWA_117 1458204 : 1468647 9 Acinetobacter_phage(25.0%) NA NA
DBSCAN-SWA_118 1477125 : 1482175 5 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_119 1485736 : 1486582 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_120 1489601 : 1490324 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_121 1494255 : 1497037 3 uncultured_Caudovirales_phage(66.67%) NA NA
DBSCAN-SWA_122 1504736 : 1505390 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_123 1509930 : 1512206 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_124 1519281 : 1521384 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_125 1546777 : 1547920 2 Halovirus(50.0%) NA NA
DBSCAN-SWA_126 1553980 : 1558868 3 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_127 1569783 : 1570631 2 Emiliania_huxleyi_virus(50.0%) NA NA
DBSCAN-SWA_128 1574982 : 1591398 13 Streptococcus_virus(14.29%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage