CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012217	Campylobacter jejuni strain CJ071CC464 chromosome, complete genome	1 crisprs	DEDDh,cas14j,cas2,cas1,csa3	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012217_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012217_1

1664925-1665030

Unclear

Consensus_repeat	Method
TTTATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CRISPRCasFinder

1 spacers

cas2,cas1

The CRISPR arrays of NZ_CP012217_1

>merge|NZ_CP012217|1|1664925-1665030|CRISPRCasFinder
TTTATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAAATGAAAAAAAAGTTTAAAGATAGCTTTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP012217|1|1|1664925-1665030|CRISPRCasFinder
TTTATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	AATGAAAAAAAAGTTTAAAGATAGCT
TTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012217.1\|WP_002803269.1\|1658947_1659139_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP012217.1\|WP_032584582.1\|1670527_1670749_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182621
NZ_CP012217.1\|WP_002860687.1\|1672626_1673616_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP012217.1\|WP_002858888.1\|1660130_1661279_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP012217.1\|WP_032584578.1\|1669981_1670194_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012217.1\|WP_032584586.1\|1674278_1675028_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP012217.1\|WP_002779488.1\|1662945_1663167_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP012217.1\|WP_002797817.1\|1665173_1665605_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP012217.1\|WP_002860686.1\|1673676_1674282_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP012217.1\|WP_032584575.1\|1665597_1666488_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP012217.1\|WP_002934784.1\|1663167_1663614_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP012217.1\|WP_032584571.1\|1661402_1662944_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP012217.1\|WP_002851264.1\|1655505_1656147_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP012217.1\|WP_052775826.1\|1670211_1670535_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225611
NZ_CP012217.1\|WP_002867229.1\|1654576_1655509_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP012217.1\|WP_002887719.1\|1663617_1664808_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP012217.1\|WP_032584584.1\|1671192_1672416_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225154
NZ_CP012217.1\|WP_002851502.1\|1659113_1659827_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP012217.1\|WP_002855377.1\|1675002_1675734_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP012217.1\|WP_079254195.1\|1656143_1658948_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153

Protein	Function_ID	Function_description	E-value
NZ_CP012217.1\|WP_002803269.1\|1658947_1659139_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00537271
NZ_CP012217.1\|WP_032584582.1\|1670527_1670749_+\|hypothetical-protein	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	0.00904344
NZ_CP012217.1\|WP_002860687.1\|1672626_1673616_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP012217.1\|WP_002858888.1\|1660130_1661279_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP012217.1\|WP_032584586.1\|1674278_1675028_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	8.72225e-93
NZ_CP012217.1\|WP_002779488.1\|1662945_1663167_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP012217.1\|WP_002797817.1\|1665173_1665605_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
NZ_CP012217.1\|WP_002860686.1\|1673676_1674282_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.32317e-69
NZ_CP012217.1\|WP_032584575.1\|1665597_1666488_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.42012e-120
NZ_CP012217.1\|WP_002934784.1\|1663167_1663614_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.7419e-44
NZ_CP012217.1\|WP_032584571.1\|1661402_1662944_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.00536e-119
NZ_CP012217.1\|WP_002851264.1\|1655505_1656147_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP012217.1\|WP_052775826.1\|1670211_1670535_+\|hypothetical-protein	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	1.37131e-06
NZ_CP012217.1\|WP_002867229.1\|1654576_1655509_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	5.55833e-86
NZ_CP012217.1\|WP_002887719.1\|1663617_1664808_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	7.93699e-140
NZ_CP012217.1\|WP_032584584.1\|1671192_1672416_-\|hypothetical-protein	gnl\|CDD\|225154	COG2245, COG2245, Predicted membrane protein [Function unknown].	0.0069254
NZ_CP012217.1\|WP_002851502.1\|1659113_1659827_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP012217.1\|WP_002855377.1\|1675002_1675734_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.57422e-98
NZ_CP012217.1\|WP_079254195.1\|1656143_1658948_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0

>NZ_CP012217.1|WP_002887719.1|1663617_1664808_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGITPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENICIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDIIFMP
>NZ_CP012217.1|WP_002934784.1|1663167_1663614_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDISKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP012217.1|WP_002779488.1|1662945_1663167_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP012217.1|WP_032584571.1|1661402_1662944_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINYDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFKIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRAEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP012217.1|WP_002858888.1|1660130_1661279_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDRKNELQMIREFSYKDYSLRN
>NZ_CP012217.1|WP_002851502.1|1659113_1659827_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP012217.1|WP_002803269.1|1658947_1659139_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWEKYYIKAE
>NZ_CP012217.1|WP_079254195.1|1656143_1658948_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP012217.1|WP_002851264.1|1655505_1656147_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP012217.1|WP_002867229.1|1654576_1655509_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP012217.1|WP_002797817.1|1665173_1665605_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP012217.1|WP_032584575.1|1665597_1666488_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQASLSSALFNAFARHKIILLTCDETHSINGIFTPFLGHFQSAKIAKEQINVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFKNSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP012217.1|WP_032584578.1|1669981_1670194_+|hypothetical-protein
MALKIVISSYAELLLLLLACMYPVLISLKIRPITTVCALSLIALDYDPKDGNSINMADMVGQSDNVVRLF
>NZ_CP012217.1|WP_052775826.1|1670211_1670535_+|hypothetical-protein
MITYVVIIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYTLFPWLPVIFLFIAYFFTIKLDVVIANFVRISLVFLVEFARHRNVRKLGEDMMVILKGYG
>NZ_CP012217.1|WP_032584582.1|1670527_1670749_+|hypothetical-protein
MAEIFISVVSIIIAAGVCAKGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFANAILNRICIKI
>NZ_CP012217.1|WP_032584584.1|1671192_1672416_-|hypothetical-protein
MHNLNEALFQKKIKEIRLKAIASIICGFLGIIPYLGVLFVLASWILFFIVLYDLKIYGGAKNLFKNFLISVGIGFFGILVNTSILFAMLKPRTGIFGGLYFNQDNIFMAIAIFLVLHFAILALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGLVFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILNLLVLTFSFILEVISFEDFRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIWQGLSVFGSHLLFIPDFMVDQPPEIIYGSLNIILSLCYIIFAFLFFKILIQITKEKLFYLIFAFYVCIKILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWLMLKGQKNVKIC
>NZ_CP012217.1|WP_002860687.1|1672626_1673616_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP012217.1|WP_002860686.1|1673676_1674282_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLDSQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM
>NZ_CP012217.1|WP_032584586.1|1674278_1675028_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NZ_CP012217.1|WP_002855377.1|1675002_1675734_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012217_1	1.1\|1664965\|26\|NZ_CP012217\|CRISPRCasFinder	1664965-1664990	26	MN530981	Campylobacter phage DA10, complete genome	14803-14828	0	1.0
NZ_CP012217_1	1.1\|1664965\|26\|NZ_CP012217\|CRISPRCasFinder	1664965-1664990	26	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	795123-795148	5	0.808
NZ_CP012217_1	1.1\|1664965\|26\|NZ_CP012217\|CRISPRCasFinder	1664965-1664990	26	NZ_CP040856	Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence	90292-90317	5	0.808
NZ_CP012217_1	1.1\|1664965\|26\|NZ_CP012217\|CRISPRCasFinder	1664965-1664990	26	NZ_CP026733	Shigella boydii strain ATCC 8700 plasmid unnamed2, complete sequence	50101-50126	5	0.808
NZ_CP012217_1	1.1\|1664965\|26\|NZ_CP012217\|CRISPRCasFinder	1664965-1664990	26	NZ_CP026794	Shigella flexneri strain 74-1170 plasmid unnamed	250198-250223	5	0.808
NZ_CP012217_1	1.1\|1664965\|26\|NZ_CP012217\|CRISPRCasFinder	1664965-1664990	26	NC_014025	Bacillus megaterium QM B1551 plasmid pBM500, complete sequence	13249-13274	5	0.808
NZ_CP012217_1	1.1\|1664965\|26\|NZ_CP012217\|CRISPRCasFinder	1664965-1664990	26	KF302034	UNVERIFIED: Pseudoalteromonas phage HM1, complete genome	58041-58066	5	0.808

1. spacer 1.1|1664965|26|NZ_CP012217|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
aatgaaaaaaaagtttaaagatagct	Protospacer
**************************

2. spacer 1.1|1664965|26|NZ_CP012217|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
catgagaaaaaagtttaaagataaag	Protospacer
 ****.*****************.

3. spacer 1.1|1664965|26|NZ_CP012217|CRISPRCasFinder matches to NZ_CP040856 (Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
aatgaaaaaaaagtttaaatatccgc	Protospacer
******************* **   .

4. spacer 1.1|1664965|26|NZ_CP012217|CRISPRCasFinder matches to NZ_CP026733 (Shigella boydii strain ATCC 8700 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
gatgaaaaaaaatttaaaagatagtg	Protospacer
.*********** ** ********.

5. spacer 1.1|1664965|26|NZ_CP012217|CRISPRCasFinder matches to NZ_CP026794 (Shigella flexneri strain 74-1170 plasmid unnamed) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
gatgaaaaaaaatttaaaagatagtg	Protospacer
.*********** ** ********.

6. spacer 1.1|1664965|26|NZ_CP012217|CRISPRCasFinder matches to NC_014025 (Bacillus megaterium QM B1551 plasmid pBM500, complete sequence) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
aatgaaaaaagagtttaaagacataa	Protospacer
**********.**********.*

7. spacer 1.1|1664965|26|NZ_CP012217|CRISPRCasFinder matches to KF302034 (UNVERIFIED: Pseudoalteromonas phage HM1, complete genome) position: , mismatch: 5, identity: 0.808

aatgaaaaaaaagtttaaagatagct	CRISPR spacer
catgaagaaaaagtttaaagatgaat	Protospacer
 *****.***************.. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

204441 : 256204

Campylobacter_phage(58.06%)

protease,tail,plate,integrase,terminase,transposase

attL 229931:229947|attR 245073:245089

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115791380.1\|204441_206127_+	AAA family ATPase	X2KLG0	Campylobacter_phage	7.3e-86	38.1
WP_032582421.1\|206206_206836_+	LexA family transcriptional regulator	A7YGK7	Campylobacter_phage	2.6e-60	100.0
WP_002865000.1\|206916_207237_+	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_002843339.1\|207246_207441_+	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865289.1\|207520_207808_+	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
WP_002888079.1\|207835_208651_-	DNA adenine methylase	A7YGG5	Campylobacter_phage	4.1e-151	99.6
WP_002875578.1\|208755_209244_-	virion morphogenesis protein	A7YG96	Campylobacter_phage	1.6e-89	100.0
WP_052784354.1\|209247_211470_-\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	0.0e+00	99.9
WP_002865378.1\|211511_211817_+	hypothetical protein	A7YGX3	Campylobacter_phage	2.7e-39	100.0
WP_002843342.1\|211928_212168_-\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	3.2e-11	62.5
WP_032582436.1\|212272_212782_-\|tail	tail protein	A7YG76	Campylobacter_phage	9.5e-90	98.8
WP_052789865.1\|212808_214002_-\|tail	phage tail sheath family protein	A7YGA3	Campylobacter_phage	7.2e-197	99.5
WP_052783154.1\|214012_215026_-	hypothetical protein	A7YGY4	Campylobacter_phage	2.9e-191	99.4
WP_002888062.1\|215125_215497_-	DUF1353 domain-containing protein	A7YGF6	Campylobacter_phage	5.7e-68	100.0
WP_002869847.1\|215493_216000_-	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	1.4e-85	97.6
WP_115791381.1\|216009_217089_-\|tail	phage tail protein	A7YGV0	Campylobacter_phage	5.1e-149	99.3
WP_002864870.1\|217088_217709_-\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	2.8e-59	97.4
WP_014517221.1\|217705_218872_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002795239.1\|218868_219159_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002784486.1\|219155_219347_-	hypothetical protein	NA	NA	NA	NA
WP_002827116.1\|219355_219988_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	4.6e-09	35.6
WP_002784492.1\|219987_220302_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|220413_220662_-	hypothetical protein	NA	NA	NA	NA
WP_002827119.1\|220658_221000_-	hypothetical protein	NA	NA	NA	NA
WP_019108986.1\|221010_221400_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	1.7e-22	46.7
WP_002784501.1\|221548_221983_+	hypothetical protein	NA	NA	NA	NA
WP_002827123.1\|221984_222800_+	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_052800063.1\|222802_223330_+	hypothetical protein	NA	NA	NA	NA
WP_002888047.1\|223332_224310_+	hypothetical protein	R9TRN2	Rhizobium_phage	2.5e-06	23.4
WP_002855185.1\|224424_224883_+	DUF1320 family protein	NA	NA	NA	NA
WP_002803360.1\|224875_225475_+	DUF1804 family protein	NA	NA	NA	NA
WP_038401728.1\|225474_227145_+\|terminase	phage terminase large subunit	H1ZZE1	Pseudomonas_virus	1.5e-91	41.2
WP_004297439.1\|227154_228525_+	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	5.8e-17	26.6
WP_032584097.1\|228526_229765_+	hypothetical protein	M4M9M5	Vibrio_phage	1.9e-19	29.8
WP_002784519.1\|229890_230265_+\|tail	tail protein	NA	NA	NA	NA
229931:229947	attL	NA	NA	NA	NA
WP_002791401.1\|230257_230449_+\|tail	tail protein	NA	NA	NA	NA
WP_002852060.1\|230442_231420_+\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_032584099.1\|231416_231701_-	DNA-binding protein	NA	NA	NA	NA
WP_039332543.1\|231794_232466_+	deoxyribonuclease	NA	NA	NA	NA
WP_032584103.1\|232457_232733_-	hypothetical protein	NA	NA	NA	NA
WP_002841916.1\|232779_233229_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_038401749.1\|233225_233918_-	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|233917_234187_-	hypothetical protein	NA	NA	NA	NA
WP_032584108.1\|234183_235146_-	hypothetical protein	NA	NA	NA	NA
WP_002872701.1\|235204_235690_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	6.4e-19	33.3
WP_002791419.1\|235796_236138_-	hypothetical protein	NA	NA	NA	NA
WP_002824157.1\|236270_236456_-	hypothetical protein	NA	NA	NA	NA
WP_002791422.1\|236452_236644_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002806833.1\|236646_237570_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_032584110.1\|237740_239816_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002804142.1\|239812_240013_-	hypothetical protein	NA	NA	NA	NA
WP_032584112.1\|240162_240837_+	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	9.8e-26	32.1
WP_115791437.1\|240836_241535_+	hypothetical protein	NA	NA	NA	NA
WP_052775884.1\|243510_244179_-	hypothetical protein	NA	NA	NA	NA
WP_002902203.1\|244293_244707_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_002902200.1\|244703_245576_-	hypothetical protein	NA	NA	NA	NA
245073:245089	attR	NA	NA	NA	NA
WP_002826340.1\|248670_249180_-	DUF2393 family protein	NA	NA	NA	NA
WP_002868730.1\|249179_249710_-	DUF2393 domain-containing protein	NA	NA	NA	NA
WP_002924112.1\|249721_250810_-	membrane protein	NA	NA	NA	NA
WP_002851928.1\|250822_251737_-	branched-chain-amino-acid transaminase	NA	NA	NA	NA
WP_002924115.1\|251912_252119_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_052775810.1\|252115_252571_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002876228.1\|252570_253662_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_002857452.1\|253756_254197_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_002859836.1\|254196_254988_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_079254180.1\|254950_256204_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.5e-117	54.5

DBSCAN-SWA_2

1572663 : 1579299

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002857908.1\|1572663_1573329_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
WP_002857991.1\|1573316_1573922_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
WP_002858413.1\|1573909_1574929_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
WP_002857889.1\|1574948_1575800_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_002858299.1\|1575818_1576760_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
WP_002934842.1\|1576783_1577824_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	2.9e-69	44.1
WP_002852387.1\|1577823_1578750_-	hypothetical protein	NA	NA	NA	NA
WP_002858190.1\|1578753_1579299_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage