CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012221	Campylobacter jejuni strain CJ018CCUA chromosome, complete genome	1 crisprs	DEDDh,WYL,cas2,cas1,cas9,csa3	0	15	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012221_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012221_1

1537972-1538404

TypeII

Consensus_repeat	Method
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

6 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP012221_1

>merge|NZ_CP012221|1|1537972-1538404|CRISPRCasFinder,CRT,PILER-CR
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTTGTTGAGTGGGTTATGAGCCAAAATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCTACCCCTATCCACAACCGCCAAGTGATTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATGAGTTATCAAGTTTTTGTATTTAGCAGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCAAAGTGCTGAAAAAGATAGAAACTTACTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCAGAGATAACGAGTTTAATTACACTAGAGAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCATTATTTATAATACTATCACTTGCCAAAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP012221|1|1|1537972-1538404|CRISPRCasFinder
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTGTTGAGTGGGTTATGAGCCAAAATA
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACCCCTATCCACAACCGCCAAGTGATT
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGAGTTATCAAGTTTTTGTATTTAGCA
GGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGTGCTGAAAAAGATAGAAACTTACT
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAGAGATAACGAGTTTAATTACACTAGAG
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CATTATTTATAATACTATCACTTGCCAAA
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP012221|1|1|1537973-1538404|CRT
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTGTTGAGTGGGTTATGAGCCAAAATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACCCCTATCCACAACCGCCAAGTGATTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGAGTTATCAAGTTTTTGTATTTAGCAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGTGCTGAAAAAGATAGAAACTTACTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAGAGATAACGAGTTTAATTACACTAGAGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CATTATTTATAATACTATCACTTGCCAAAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP012221|1|1|1537974-1538404|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTGTTGAGTGGGTTATGAGCCAAAATAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACCCCTATCCACAACCGCCAAGTGATTAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGAGTTATCAAGTTTTTGTATTTAGCAGG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAAAGTGCTGAAAAAGATAGAAACTTACTTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CAGAGATAACGAGTTTAATTACACTAGAGAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CATTATTTATAATACTATCACTTGCCAAAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012221.1\|WP_002780988.1\|1538548_1538980_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP012221.1\|WP_002873941.1\|1545217_1546441_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225154
NZ_CP012221.1\|WP_002779488.1\|1535990_1536212_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP012221.1\|WP_002898615.1\|1549755_1550793_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP012221.1\|WP_115766866.1\|1534447_1535989_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP012221.1\|WP_002797819.1\|1538972_1539863_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP012221.1\|WP_002851264.1\|1528549_1529191_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP012221.1\|WP_057035824.1\|1549027_1549759_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP012221.1\|WP_002851502.1\|1532157_1532871_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP012221.1\|WP_002858431.1\|1533175_1534324_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP012221.1\|WP_079676471.1\|1529187_1531992_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP012221.1\|WP_002860687.1\|1546651_1547641_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP012221.1\|WP_115766868.1\|1548303_1549053_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP012221.1\|WP_002876343.1\|1543021_1543204_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182621
NZ_CP012221.1\|WP_032686121.1\|1547701_1548307_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP012221.1\|WP_115766867.1\|1539859_1542814_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP012221.1\|WP_002858151.1\|1536662_1537853_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP012221.1\|WP_002858889.1\|1536212_1536659_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP012221.1\|WP_002851537.1\|1531991_1532183_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP012221.1\|WP_002867229.1\|1527620_1528553_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645

Protein	Function_ID	Function_description	E-value
NZ_CP012221.1\|WP_002780988.1\|1538548_1538980_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.96465e-59
NZ_CP012221.1\|WP_002873941.1\|1545217_1546441_-\|hypothetical-protein	gnl\|CDD\|225154	COG2245, COG2245, Predicted membrane protein [Function unknown].	0.00301243
NZ_CP012221.1\|WP_002779488.1\|1535990_1536212_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP012221.1\|WP_002898615.1\|1549755_1550793_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.98028e-33
NZ_CP012221.1\|WP_115766866.1\|1534447_1535989_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.61372e-118
NZ_CP012221.1\|WP_002797819.1\|1538972_1539863_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
NZ_CP012221.1\|WP_002851264.1\|1528549_1529191_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP012221.1\|WP_057035824.1\|1549027_1549759_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	3.34939e-100
NZ_CP012221.1\|WP_002851502.1\|1532157_1532871_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP012221.1\|WP_002858431.1\|1533175_1534324_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP012221.1\|WP_079676471.1\|1529187_1531992_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP012221.1\|WP_002860687.1\|1546651_1547641_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP012221.1\|WP_115766868.1\|1548303_1549053_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	5.79643e-93
NZ_CP012221.1\|WP_002876343.1\|1543021_1543204_+\|hypothetical-protein	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	0.000391506
NZ_CP012221.1\|WP_032686121.1\|1547701_1548307_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	8.24028e-70
NZ_CP012221.1\|WP_115766867.1\|1539859_1542814_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP012221.1\|WP_002858151.1\|1536662_1537853_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_CP012221.1\|WP_002858889.1\|1536212_1536659_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.09823e-44
NZ_CP012221.1\|WP_002851537.1\|1531991_1532183_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP012221.1\|WP_002867229.1\|1527620_1528553_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	5.55833e-86

>NZ_CP012221.1|WP_002858151.1|1536662_1537853_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP012221.1|WP_002858889.1|1536212_1536659_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP012221.1|WP_002779488.1|1535990_1536212_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP012221.1|WP_115766866.1|1534447_1535989_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLVPKQFPQGEILKALPLLKNKSKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLTGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVKLPKKIKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP012221.1|WP_002858431.1|1533175_1534324_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP012221.1|WP_002851502.1|1532157_1532871_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP012221.1|WP_002851537.1|1531991_1532183_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP012221.1|WP_079676471.1|1529187_1531992_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEALEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP012221.1|WP_002851264.1|1528549_1529191_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP012221.1|WP_002867229.1|1527620_1528553_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP012221.1|WP_002780988.1|1538548_1538980_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP012221.1|WP_002797819.1|1538972_1539863_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP012221.1|WP_115766867.1|1539859_1542814_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIVKRRGYDDIKNSDDKEKGTILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPEKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDCLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP012221.1|WP_002876343.1|1543021_1543204_+|hypothetical-protein
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKTPSREYTSF
>NZ_CP012221.1|WP_002873941.1|1545217_1546441_-|hypothetical-protein
MHNLNEALFQKKIKEIRFKAIASIVCGFLSIIPYLGVLFNLVSWILFFILLYDLKIYGGAKNLFKNFLISVGIGFFGILVNTSILFAMLKPRTGIFGGLYFNQDNIFMAIAIFLVLHFAILALIFPFLKAFYYEIARATKQKYFTYAFNTFYLGLLALIIGIGLVFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILNLLVLTFSFILEIISFEDFRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIWQGLSVFGSHLLFIPDFMVDQPPEIVYGSLNIILSLCYIIFAFLFFKILIQITKEKLFYLIFAFYVCIEILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWLMLKGQKNVKIC
>NZ_CP012221.1|WP_002860687.1|1546651_1547641_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP012221.1|WP_032686121.1|1547701_1548307_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGKIVFNNKEAKKILENFTHPKIRAKILEQIQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP012221.1|WP_115766868.1|1548303_1549053_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINLNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNQKVQNKIKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NZ_CP012221.1|WP_057035824.1|1549027_1549759_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQFFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP012221.1|WP_002898615.1|1549755_1550793_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKILKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012221_1	1.2\|1538075\|29\|NZ_CP012221\|CRISPRCasFinder	1538075-1538103	29	MN530981	Campylobacter phage DA10, complete genome	14886-14914	0	1.0
NZ_CP012221_1	1.3\|1538141\|29\|NZ_CP012221\|CRISPRCasFinder	1538141-1538169	29	MN530981	Campylobacter phage DA10, complete genome	1729-1757	0	1.0
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	MN530981	Campylobacter phage DA10, complete genome	34982-35010	0	1.0
NZ_CP012221_1	1.8\|1538075\|30\|NZ_CP012221\|CRT	1538075-1538104	30	MN530981	Campylobacter phage DA10, complete genome	14886-14915	0	1.0
NZ_CP012221_1	1.9\|1538141\|30\|NZ_CP012221\|CRT	1538141-1538170	30	MN530981	Campylobacter phage DA10, complete genome	1728-1757	0	1.0
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	MN530981	Campylobacter phage DA10, complete genome	34981-35010	0	1.0
NZ_CP012221_1	1.14\|1538075\|31\|NZ_CP012221\|PILER-CR	1538075-1538105	31	MN530981	Campylobacter phage DA10, complete genome	14886-14916	1	0.968
NZ_CP012221_1	1.15\|1538141\|31\|NZ_CP012221\|PILER-CR	1538141-1538171	31	MN530981	Campylobacter phage DA10, complete genome	1727-1757	1	0.968
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	MN530981	Campylobacter phage DA10, complete genome	34980-35010	1	0.968
NZ_CP012221_1	1.6\|1538339\|29\|NZ_CP012221\|CRISPRCasFinder	1538339-1538367	29	MN530981	Campylobacter phage DA10, complete genome	18503-18531	2	0.931
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	MN530981	Campylobacter phage DA10, complete genome	18503-18532	2	0.933
NZ_CP012221_1	1.1\|1538009\|29\|NZ_CP012221\|CRISPRCasFinder	1538009-1538037	29	JX560521	Acinetobacter phage phiAC-1, complete genome	6842-6870	3	0.897
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	MN530981	Campylobacter phage DA10, complete genome	18503-18533	3	0.903
NZ_CP012221_1	1.3\|1538141\|29\|NZ_CP012221\|CRISPRCasFinder	1538141-1538169	29	AF440571	Sulfolobus islandicus filamentous virus, partial genome	11644-11672	5	0.828
NZ_CP012221_1	1.3\|1538141\|29\|NZ_CP012221\|CRISPRCasFinder	1538141-1538169	29	AP013610	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, * SEQUENCING IN PROGRESS *	6962-6990	6	0.793
NZ_CP012221_1	1.3\|1538141\|29\|NZ_CP012221\|CRISPRCasFinder	1538141-1538169	29	KX467643	Sulfolobus islandicus filamentous virus 2, complete genome	10552-10580	6	0.793
NZ_CP012221_1	1.6\|1538339\|29\|NZ_CP012221\|CRISPRCasFinder	1538339-1538367	29	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	37160-37188	6	0.793
NZ_CP012221_1	1.7\|1538009\|30\|NZ_CP012221\|CRT	1538009-1538038	30	JX560521	Acinetobacter phage phiAC-1, complete genome	6842-6871	6	0.8
NZ_CP012221_1	1.9\|1538141\|30\|NZ_CP012221\|CRT	1538141-1538170	30	AF440571	Sulfolobus islandicus filamentous virus, partial genome	11644-11673	6	0.8
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	37160-37189	6	0.8
NZ_CP012221_1	1.15\|1538141\|31\|NZ_CP012221\|PILER-CR	1538141-1538171	31	AF440571	Sulfolobus islandicus filamentous virus, partial genome	11644-11674	6	0.806
NZ_CP012221_1	1.9\|1538141\|30\|NZ_CP012221\|CRT	1538141-1538170	30	AP013610	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, * SEQUENCING IN PROGRESS *	6961-6990	7	0.767
NZ_CP012221_1	1.9\|1538141\|30\|NZ_CP012221\|CRT	1538141-1538170	30	KX467643	Sulfolobus islandicus filamentous virus 2, complete genome	10552-10581	7	0.767
NZ_CP012221_1	1.13\|1538009\|31\|NZ_CP012221\|PILER-CR	1538009-1538039	31	JX560521	Acinetobacter phage phiAC-1, complete genome	6842-6872	7	0.774
NZ_CP012221_1	1.3\|1538141\|29\|NZ_CP012221\|CRISPRCasFinder	1538141-1538169	29	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	38343-38371	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	MN172529	Listeria phage LP-039, complete genome	15314-15342	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	MG649967	Vibrio virus Thalassa, complete genome	82306-82334	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	MT178766	Listeria virus P100plus, complete genome	117318-117346	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	DQ003638	Listeria phage A511, complete genome	15838-15866	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	MT178767	Listeria virus P200, complete genome	117319-117347	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	DQ004855	Listeria bacteriophage P100, complete genome	113673-113701	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	KJ094033	Listeria phage LP-048, complete genome	17768-17796	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	NC_042095	Vibrio phage Thalassa, complete genome	82306-82334	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	15796-15824	8	0.724
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	MT448617	Vibrio phage River4, complete genome	82097-82125	8	0.724
NZ_CP012221_1	1.6\|1538339\|29\|NZ_CP012221\|CRISPRCasFinder	1538339-1538367	29	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	573502-573530	8	0.724
NZ_CP012221_1	1.6\|1538339\|29\|NZ_CP012221\|CRISPRCasFinder	1538339-1538367	29	MF033351	Acinetobacter phage vB_ApiP_P2, complete genome	36349-36377	8	0.724
NZ_CP012221_1	1.6\|1538339\|29\|NZ_CP012221\|CRISPRCasFinder	1538339-1538367	29	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	158838-158866	8	0.724
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	MG649967	Vibrio virus Thalassa, complete genome	82306-82335	8	0.733
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	NC_042095	Vibrio phage Thalassa, complete genome	82306-82335	8	0.733
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	MT448617	Vibrio phage River4, complete genome	82097-82126	8	0.733
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	573502-573531	8	0.733
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	158837-158866	8	0.733
NZ_CP012221_1	1.15\|1538141\|31\|NZ_CP012221\|PILER-CR	1538141-1538171	31	AP013610	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, * SEQUENCING IN PROGRESS *	6960-6990	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	MG649967	Vibrio virus Thalassa, complete genome	82306-82336	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NC_042095	Vibrio phage Thalassa, complete genome	82306-82336	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	MT448617	Vibrio phage River4, complete genome	82097-82127	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	20424-20454	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	29785-29815	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NZ_CP047427	Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence	21728-21758	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NZ_CP053310	Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence	27-57	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NC_007389	Spiroplasma citri pSci3 plasmid	4230-4260	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NC_007392	Spiroplasma citri plasmid pSci6	28463-28493	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NZ_CP047431	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence	26752-26782	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NZ_CP046369	Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence	46608-46638	8	0.742
NZ_CP012221_1	1.16\|1538207\|31\|NZ_CP012221\|PILER-CR	1538207-1538237	31	NZ_CP042474	Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence	7062-7092	8	0.742
NZ_CP012221_1	1.4\|1538207\|29\|NZ_CP012221\|CRISPRCasFinder	1538207-1538235	29	CAJDKB010000002	Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence	26456-26484	9	0.69
NZ_CP012221_1	1.9\|1538141\|30\|NZ_CP012221\|CRT	1538141-1538170	30	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	38343-38372	9	0.7
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	MN172529	Listeria phage LP-039, complete genome	15313-15342	9	0.7
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	MT178766	Listeria virus P100plus, complete genome	117317-117346	9	0.7
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	DQ003638	Listeria phage A511, complete genome	15837-15866	9	0.7
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	MT178767	Listeria virus P200, complete genome	117318-117347	9	0.7
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	DQ004855	Listeria bacteriophage P100, complete genome	113672-113701	9	0.7
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	KJ094033	Listeria phage LP-048, complete genome	17767-17796	9	0.7
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	15795-15824	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP045828	Escherichia coli strain AUSMDU00014361 plasmid pAUSMDU00014361_01, complete sequence	12379-12408	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP047380	Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence	13697-13726	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP024617	Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence	51897-51926	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP023674	Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence	76346-76375	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	MF033351	Acinetobacter phage vB_ApiP_P2, complete genome	36349-36378	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP038393	Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-5, complete sequence	39175-39204	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP024055	Escherichia coli strain SMN197SH3 plasmid pO177A3, complete sequence	61977-62006	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_CP027589	Escherichia coli strain 2014C-3011 plasmid unnamed1	20377-20406	9	0.7
NZ_CP012221_1	1.12\|1538339\|30\|NZ_CP012221\|CRT	1538339-1538368	30	NZ_AP014804	Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence	46574-46603	9	0.7
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_CP045828	Escherichia coli strain AUSMDU00014361 plasmid pAUSMDU00014361_01, complete sequence	12379-12409	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_CP047380	Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence	13697-13727	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_CP024617	Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence	51897-51927	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_CP023674	Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence	76346-76376	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_CP038393	Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-5, complete sequence	39174-39204	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_CP024055	Escherichia coli strain SMN197SH3 plasmid pO177A3, complete sequence	61976-62006	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_CP027589	Escherichia coli strain 2014C-3011 plasmid unnamed1	20376-20406	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_AP014804	Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence	46573-46603	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	573502-573532	9	0.71
NZ_CP012221_1	1.18\|1538339\|31\|NZ_CP012221\|PILER-CR	1538339-1538369	31	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	158836-158866	9	0.71
NZ_CP012221_1	1.10\|1538207\|30\|NZ_CP012221\|CRT	1538207-1538236	30	CAJDKB010000002	Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence	26455-26484	10	0.667
NZ_CP012221_1	1.15\|1538141\|31\|NZ_CP012221\|PILER-CR	1538141-1538171	31	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	38343-38373	10	0.677

1. spacer 1.2|1538075|29|NZ_CP012221|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctacccctatccacaaccgccaagtgatt	CRISPR spacer
ctacccctatccacaaccgccaagtgatt	Protospacer
*****************************

2. spacer 1.3|1538141|29|NZ_CP012221|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatgagttatcaagtttttgtatttagca	CRISPR spacer
tatgagttatcaagtttttgtatttagca	Protospacer
*****************************

3. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaagtgctgaaaaagatagaaacttact	Protospacer
*****************************

4. spacer 1.8|1538075|30|NZ_CP012221|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctacccctatccacaaccgccaagtgatta	CRISPR spacer
ctacccctatccacaaccgccaagtgatta	Protospacer
******************************

5. spacer 1.9|1538141|30|NZ_CP012221|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
tatgagttatcaagtttttgtatttagcag	Protospacer
******************************

6. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaagtgctgaaaaagatagaaacttactt	Protospacer
******************************

7. spacer 1.14|1538075|31|NZ_CP012221|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ctacccctatccacaaccgccaagtgattag	CRISPR spacer
ctacccctatccacaaccgccaagtgattaa	Protospacer
******************************.

8. spacer 1.15|1538141|31|NZ_CP012221|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

tatgagttatcaagtttttgtatttagcagg	CRISPR spacer
tatgagttatcaagtttttgtatttagcagt	Protospacer
******************************

9. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
caaagtgctgaaaaagatagaaacttactta	Protospacer
******************************.

10. spacer 1.6|1538339|29|NZ_CP012221|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.931

cattatttataatactatcacttgccaaa	CRISPR spacer
cattatttataatactatcgcttgctaaa	Protospacer
*******************.*****.***

11. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

cattatttataatactatcacttgccaaaa	CRISPR spacer
cattatttataatactatcgcttgctaaaa	Protospacer
*******************.*****.****

12. spacer 1.1|1538009|29|NZ_CP012221|CRISPRCasFinder matches to JX560521 (Acinetobacter phage phiAC-1, complete genome) position: , mismatch: 3, identity: 0.897

ttttgttgagtgggttatgagccaaaata-	CRISPR spacer
ttttgtggagtgggttatgag-caaactag	Protospacer
****** ************** **** **

13. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 3, identity: 0.903

cattatttataatactatcacttgccaaaag	CRISPR spacer
cattatttataatactatcgcttgctaaaaa	Protospacer
*******************.*****.****.

14. spacer 1.3|1538141|29|NZ_CP012221|CRISPRCasFinder matches to AF440571 (Sulfolobus islandicus filamentous virus, partial genome) position: , mismatch: 5, identity: 0.828

tatgagttatcaagtttttgtatttagca	CRISPR spacer
tataagttaacaagtttttgtatttttcc	Protospacer
***.***** ***************  *

15. spacer 1.3|1538141|29|NZ_CP012221|CRISPRCasFinder matches to AP013610 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.793

tatgagttatcaagtttttgtatttagca	CRISPR spacer
cttttgttctaaagtttttgtatttagca	Protospacer
. *  *** * ******************

16. spacer 1.3|1538141|29|NZ_CP012221|CRISPRCasFinder matches to KX467643 (Sulfolobus islandicus filamentous virus 2, complete genome) position: , mismatch: 6, identity: 0.793

tatgagttatcaagtttttgtatttagca	CRISPR spacer
tgtaagttaacaagtttttgtatttttct	Protospacer
*.*.***** ***************  *

17. spacer 1.6|1538339|29|NZ_CP012221|CRISPRCasFinder matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

cattatttataatactatcact--tgccaaa	CRISPR spacer
gattaattataatactatcactgctatca--	Protospacer
 **** ****************  *..**

18. spacer 1.7|1538009|30|NZ_CP012221|CRT matches to JX560521 (Acinetobacter phage phiAC-1, complete genome) position: , mismatch: 6, identity: 0.8

ttttgttgagtgggttatgagccaaaataa	CRISPR spacer
ttttgtggagtgggttatgagcaaactaga	Protospacer
****** *************** **   .*

19. spacer 1.9|1538141|30|NZ_CP012221|CRT matches to AF440571 (Sulfolobus islandicus filamentous virus, partial genome) position: , mismatch: 6, identity: 0.8

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
tataagttaacaagtttttgtatttttcca	Protospacer
***.***** ***************  * .

20. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

cattatttataatactatcact--tgccaaaa	CRISPR spacer
gattaattataatactatcactgctatcaa--	Protospacer
 **** ****************  *..***

21. spacer 1.15|1538141|31|NZ_CP012221|PILER-CR matches to AF440571 (Sulfolobus islandicus filamentous virus, partial genome) position: , mismatch: 6, identity: 0.806

tatgagttatcaagtttttgtatttagcagg	CRISPR spacer
tataagttaacaagtttttgtatttttccag	Protospacer
***.***** ***************  * .*

22. spacer 1.9|1538141|30|NZ_CP012221|CRT matches to AP013610 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
cttttgttctaaagtttttgtatttagcaa	Protospacer
. *  *** * ******************.

23. spacer 1.9|1538141|30|NZ_CP012221|CRT matches to KX467643 (Sulfolobus islandicus filamentous virus 2, complete genome) position: , mismatch: 7, identity: 0.767

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
tgtaagttaacaagtttttgtatttttcta	Protospacer
*.*.***** ***************  * .

24. spacer 1.13|1538009|31|NZ_CP012221|PILER-CR matches to JX560521 (Acinetobacter phage phiAC-1, complete genome) position: , mismatch: 7, identity: 0.774

ttttgttgagtgggttatgagccaaaataag	CRISPR spacer
ttttgtggagtgggttatgagcaaactagaa	Protospacer
****** *************** **   .*.

25. spacer 1.3|1538141|29|NZ_CP012221|CRISPRCasFinder matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.724

tatgagttatcaagtttttgtatttagca	CRISPR spacer
attgagtttttaagtttttgtatttcatc	Protospacer
  ****** *.************** ..

26. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

27. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
attgacgctgaaaaagataaaaacttaat	Protospacer
   ...*************.******* *

28. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

29. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

30. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

31. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

32. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

33. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
attgacgctgaaaaagataaaaacttaat	Protospacer
   ...*************.******* *

34. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
caaaatgctgaaaaagatagacagaagtg	Protospacer
****.**************** *   ..

35. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 8, identity: 0.724

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
attgacgctgaaaaagataaaaacttaat	Protospacer
   ...*************.******* *

36. spacer 1.6|1538339|29|NZ_CP012221|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.724

cattatttataatactatcacttgccaaa	CRISPR spacer
cattattaataatactatcaattatattg	Protospacer
******* ************ **..   .

37. spacer 1.6|1538339|29|NZ_CP012221|CRISPRCasFinder matches to MF033351 (Acinetobacter phage vB_ApiP_P2, complete genome) position: , mismatch: 8, identity: 0.724

cattatttataatactatcacttgccaaa	CRISPR spacer
gattatttataacactatcactagatgct	Protospacer
 ***********.********* * ..

38. spacer 1.6|1538339|29|NZ_CP012221|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.724

cattatttataatactatcacttgccaaa	CRISPR spacer
cattattaataatactatcaattatattg	Protospacer
******* ************ **..   .

39. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 8, identity: 0.733

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
attgacgctgaaaaagataaaaacttaatt	Protospacer
   ...*************.******* **

40. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 8, identity: 0.733

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
attgacgctgaaaaagataaaaacttaatt	Protospacer
   ...*************.******* **

41. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 8, identity: 0.733

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
attgacgctgaaaaagataaaaacttaatt	Protospacer
   ...*************.******* **

42. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.733

cattatttataatactatcacttgccaaaa	CRISPR spacer
cattattaataatactatcaattatattga	Protospacer
******* ************ **..   .*

43. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.733

cattatttataatactatcacttgccaaaa	CRISPR spacer
cattattaataatactatcaattatattga	Protospacer
******* ************ **..   .*

44. spacer 1.15|1538141|31|NZ_CP012221|PILER-CR matches to AP013610 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26-MedDCM-OCT-S45-C147, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.742

tatgagttatcaagtttttgtatttagcagg	CRISPR spacer
cttttgttctaaagtttttgtatttagcaac	Protospacer
. *  *** * ******************.

45. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
attgacgctgaaaaagataaaaacttaattg	Protospacer
   ...*************.******* ***

46. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
attgacgctgaaaaagataaaaacttaattg	Protospacer
   ...*************.******* ***

47. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
attgacgctgaaaaagataaaaacttaattg	Protospacer
   ...*************.******* ***

48. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

49. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

50. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NZ_CP047427 (Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

51. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NZ_CP053310 (Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

52. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NC_007389 (Spiroplasma citri pSci3 plasmid) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

53. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NC_007392 (Spiroplasma citri plasmid pSci6) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

54. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NZ_CP047431 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

55. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NZ_CP046369 (Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

56. spacer 1.16|1538207|31|NZ_CP012221|PILER-CR matches to NZ_CP042474 (Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence) position: , mismatch: 8, identity: 0.742

caaagtgctgaaaaagatagaaacttacttg	CRISPR spacer
ctttttaatgaaaaagatagaaatttaattg	Protospacer
*    *. ***************.*** ***

57. spacer 1.4|1538207|29|NZ_CP012221|CRISPRCasFinder matches to CAJDKB010000002 (Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.69

caaagtgctgaaaaagatagaaacttact	CRISPR spacer
gtgagtgctgaaaaagataaaaacaatgg	Protospacer
  .****************.****

58. spacer 1.9|1538141|30|NZ_CP012221|CRT matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.7

tatgagttatcaagtttttgtatttagcag	CRISPR spacer
attgagtttttaagtttttgtatttcatca	Protospacer
  ****** *.************** .. .

59. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

60. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

61. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

62. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

63. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

64. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

65. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 9, identity: 0.7

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
caaaatgctgaaaaagatagacagaagtgc	Protospacer
****.**************** *   .. .

66. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP045828 (Escherichia coli strain AUSMDU00014361 plasmid pAUSMDU00014361_01, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

67. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP047380 (Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

68. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP024617 (Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

69. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP023674 (Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

70. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to MF033351 (Acinetobacter phage vB_ApiP_P2, complete genome) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
gattatttataacactatcactagatgctt	Protospacer
 ***********.********* * ..

71. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP038393 (Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-5, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

72. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP024055 (Escherichia coli strain SMN197SH3 plasmid pO177A3, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

73. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_CP027589 (Escherichia coli strain 2014C-3011 plasmid unnamed1) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

74. spacer 1.12|1538339|30|NZ_CP012221|CRT matches to NZ_AP014804 (Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence) position: , mismatch: 9, identity: 0.7

cattatttataatactatcacttgccaaaa	CRISPR spacer
atacaacggtattactatcacttgccaaaa	Protospacer
   .* . .** ******************

75. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_CP045828 (Escherichia coli strain AUSMDU00014361 plasmid pAUSMDU00014361_01, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

76. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_CP047380 (Escherichia coli strain CAU16175 plasmid pCAU16175_2, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

77. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_CP024617 (Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

78. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_CP023674 (Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

79. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_CP038393 (Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-5, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

80. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_CP024055 (Escherichia coli strain SMN197SH3 plasmid pO177A3, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

81. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_CP027589 (Escherichia coli strain 2014C-3011 plasmid unnamed1) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

82. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_AP014804 (Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
atacaacggtattactatcacttgccaaaag	Protospacer
   .* . .** *******************

83. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
cattattaataatactatcaattatattgat	Protospacer
******* ************ **..   .*

84. spacer 1.18|1538339|31|NZ_CP012221|PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.71

cattatttataatactatcacttgccaaaag	CRISPR spacer
cattattaataatactatcaattatattgat	Protospacer
******* ************ **..   .*

85. spacer 1.10|1538207|30|NZ_CP012221|CRT matches to CAJDKB010000002 (Enterococcus phage vB_EhiS_268 genome assembly, contig: phage268-genome, whole genome shotgun sequence) position: , mismatch: 10, identity: 0.667

caaagtgctgaaaaagatagaaacttactt	CRISPR spacer
gtgagtgctgaaaaagataaaaacaatgga	Protospacer
  .****************.****

86. spacer 1.15|1538141|31|NZ_CP012221|PILER-CR matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.677

tatgagttatcaagtttttgtatttagcagg	CRISPR spacer
attgagtttttaagtttttgtatttcatcac	Protospacer
  ****** *.************** .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

916703 : 974775

Phaeocystis_globosa_virus(33.33%)

plate,tRNA,integrase,protease

attL 926603:926621|attR 950160:950178

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052795143.1\|916703_917222_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_052795144.1\|917319_917736_+	PepSY-like domain-containing protein	NA	NA	NA	NA
WP_115766807.1\|917743_919360_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	R4TQL5	Phaeocystis_globosa_virus	1.8e-70	43.9
WP_002869231.1\|919363_920614_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_115651691.1\|920610_922182_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_115651692.1\|922178_923234_-	3-dehydroquinate synthase	A0A0P0C619	Ostreococcus_mediterraneus_virus	5.7e-28	34.5
WP_002856550.1\|923279_924680_-	potassium transporter TrkA	NA	NA	NA	NA
WP_115651693.1\|924709_925831_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	7.5e-71	39.0
WP_052786629.1\|925832_926600_+	magnesium transporter CorA family protein	NA	NA	NA	NA
926603:926621	attL	NA	NA	NA	NA
WP_057036129.1\|927526_928198_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_052786887.1\|928623_928854_+	hypothetical protein	NA	NA	NA	NA
WP_070285991.1\|929425_929680_-	hypothetical protein	NA	NA	NA	NA
WP_002789000.1\|929855_930125_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_002779691.1\|930114_930336_-	hypothetical protein	NA	NA	NA	NA
WP_162825679.1\|930441_930585_-	hypothetical protein	NA	NA	NA	NA
WP_002887129.1\|931363_931651_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_002782139.1\|932071_932299_+	hypothetical protein	NA	NA	NA	NA
WP_002873961.1\|936001_936805_-	hypothetical protein	NA	NA	NA	NA
WP_115766808.1\|936827_938123_-	hypothetical protein	NA	NA	NA	NA
WP_115766809.1\|938134_941629_-	hypothetical protein	NA	NA	NA	NA
WP_115766904.1\|941625_943011_-	hypothetical protein	NA	NA	NA	NA
WP_052805665.1\|943614_944118_-	hypothetical protein	NA	NA	NA	NA
WP_052854873.1\|944236_944746_-	hypothetical protein	NA	NA	NA	NA
WP_052805652.1\|944864_945368_-	hypothetical protein	NA	NA	NA	NA
WP_052805653.1\|945486_945984_-	hypothetical protein	NA	NA	NA	NA
WP_100620669.1\|945984_947505_-	hypothetical protein	NA	NA	NA	NA
WP_100620581.1\|947649_947967_-	hypothetical protein	NA	NA	NA	NA
WP_032585000.1\|947974_948298_-	hypothetical protein	NA	NA	NA	NA
WP_044260528.1\|949781_950147_-	hypothetical protein	NA	NA	NA	NA
WP_002910003.1\|950143_950680_-	hypothetical protein	NA	NA	NA	NA
950160:950178	attR	NA	NA	NA	NA
WP_044260529.1\|950993_951671_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_002779560.1\|952777_953137_+	hypothetical protein	NA	NA	NA	NA
WP_115766811.1\|953405_957338_+	hypothetical protein	NA	NA	NA	NA
WP_115766812.1\|957583_958852_+	hypothetical protein	NA	NA	NA	NA
WP_115766813.1\|959154_960441_+	hypothetical protein	NA	NA	NA	NA
WP_002779664.1\|960444_961344_-	FHA domain-containing protein	NA	NA	NA	NA
WP_115766814.1\|961340_964868_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_002779662.1\|964985_965501_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002869988.1\|965750_966524_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002779660.1\|966520_967918_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002779659.1\|967927_968374_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002779658.1\|968499_969747_+	nucleobase:cation symporter	NA	NA	NA	NA
WP_002779657.1\|969815_970301_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002869989.1\|970302_971757_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002779655.1\|971759_972152_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002779654.1\|972148_973870_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002779653.1\|973866_974775_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

1048212 : 1128687

Campylobacter_phage(29.27%)

terminase,plate,protease,transposase,tail,head,tRNA,integrase

attL 1056577:1056594|attR 1067797:1067814

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052786481.1\|1048212_1049574_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_002869114.1\|1049570_1049681_-	membrane protein	NA	NA	NA	NA
WP_052786482.1\|1049674_1052428_-\|tRNA	isoleucine--tRNA ligase	A0A2P1ELB8	Moumouvirus	2.8e-66	24.5
WP_052786483.1\|1052526_1053615_+	CinA family protein	B5TK85	Pseudomonas_phage	2.7e-09	34.6
WP_052786485.1\|1054567_1055173_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_002870227.1\|1055380_1056184_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002876361.1\|1056282_1056552_+	hypothetical protein	NA	NA	NA	NA
WP_002870225.1\|1056567_1056759_+	hypothetical protein	NA	NA	NA	NA
1056577:1056594	attL	NA	NA	NA	NA
WP_115766822.1\|1056759_1058874_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_052784313.1\|1058962_1059820_+	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	5.6e-26	31.2
WP_069360446.1\|1059816_1060008_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_002824157.1\|1060004_1060190_+	hypothetical protein	NA	NA	NA	NA
WP_002865075.1\|1060245_1060677_+	hypothetical protein	NA	NA	NA	NA
WP_043020465.1\|1060750_1061089_+	hypothetical protein	NA	NA	NA	NA
WP_002806832.1\|1061284_1061770_+	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	3.2e-18	34.0
WP_002791416.1\|1061766_1061946_+	hypothetical protein	NA	NA	NA	NA
WP_002791414.1\|1062009_1062282_+	hypothetical protein	NA	NA	NA	NA
WP_002791413.1\|1062278_1062665_+	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
WP_002864977.1\|1062779_1062959_+	hypothetical protein	NA	NA	NA	NA
WP_002790255.1\|1062955_1063384_+	hypothetical protein	NA	NA	NA	NA
WP_002918730.1\|1063435_1063627_+	hypothetical protein	NA	NA	NA	NA
WP_002918728.1\|1063613_1064093_+	hypothetical protein	A7YGZ0	Campylobacter_phage	2.8e-06	30.2
WP_002870187.1\|1064231_1065365_-	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_002870186.1\|1065357_1066740_-	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	8.2e-11	22.7
WP_002865465.1\|1066736_1068263_-\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
1067797:1067814	attR	NA	NA	NA	NA
WP_002790261.1\|1068352_1068667_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|1068778_1069027_-	hypothetical protein	NA	NA	NA	NA
WP_002854893.1\|1069023_1069365_-	hypothetical protein	NA	NA	NA	NA
WP_002870185.1\|1069375_1069765_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	4.2e-21	45.9
WP_002790266.1\|1069754_1070120_-	hypothetical protein	NA	NA	NA	NA
WP_002790896.1\|1070116_1070470_-	hypothetical protein	NA	NA	NA	NA
WP_002875630.1\|1070466_1070694_-	hypothetical protein	NA	NA	NA	NA
WP_002790002.1\|1070693_1071581_-\|head	head protein	A0A2K9VH18	Faecalibacterium_phage	3.5e-63	43.7
WP_052802992.1\|1071580_1072621_-	hypothetical protein	NA	NA	NA	NA
WP_002865847.1\|1072751_1073216_+	DUF1804 family protein	NA	NA	NA	NA
WP_002795236.1\|1073212_1073845_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	1.0e-08	33.9
WP_002873733.1\|1073853_1074045_+	hypothetical protein	NA	NA	NA	NA
WP_002795239.1\|1074041_1074332_+\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_115766823.1\|1074328_1075495_+\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002864870.1\|1075592_1076213_+\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	2.8e-59	97.4
WP_002903449.1\|1076212_1077292_+\|tail	phage tail protein	A7YGV0	Campylobacter_phage	3.9e-149	100.0
WP_002903450.1\|1077301_1077808_+	DUF4376 domain-containing protein	A7YGY7	Campylobacter_phage	1.2e-84	97.0
WP_061563589.1\|1077804_1078176_+	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	5.7e-68	99.2
WP_115766824.1\|1078276_1079290_+	hypothetical protein	A7YGF5	Campylobacter_phage	4.7e-189	99.4
WP_115766825.1\|1079308_1080499_+\|tail	phage tail sheath family protein	A7YGZ6	Campylobacter_phage	2.2e-193	98.0
WP_002865794.1\|1080621_1081137_+\|tail	tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
WP_002789979.1\|1081147_1081384_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002870149.1\|1081491_1081722_-	hypothetical protein	NA	NA	NA	NA
WP_002876455.1\|1081751_1083716_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002789966.1\|1083717_1084092_+\|tail	tail protein	NA	NA	NA	NA
WP_002789964.1\|1084084_1084276_+\|tail	tail protein	NA	NA	NA	NA
WP_002865687.1\|1084269_1085238_+\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	4.3e-14	26.8
WP_002888079.1\|1085339_1086155_+	DNA adenine methylase	A7YGG5	Campylobacter_phage	4.1e-151	99.6
WP_002865266.1\|1086184_1086472_-	hypothetical protein	A7YGI8	Campylobacter_phage	6.6e-48	100.0
WP_002843339.1\|1086551_1086746_-	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865000.1\|1086755_1087076_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_115766826.1\|1087156_1087786_-	LexA family transcriptional regulator	A7YG70	Campylobacter_phage	2.2e-56	94.7
WP_052786486.1\|1088071_1088608_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_052786487.1\|1088604_1089711_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_002812868.1\|1090640_1091018_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_002856575.1\|1091026_1091578_+	single-stranded DNA-binding protein	D5LH30	Escherichia_phage	1.3e-15	43.6
WP_002853032.1\|1091588_1091849_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_002878791.1\|1091907_1094283_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.7e-134	37.9
WP_002860191.1\|1094299_1094947_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002852982.1\|1095107_1095497_+	flagellar assembly protein FliW	NA	NA	NA	NA
WP_002873292.1\|1095496_1096228_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.2e-18	28.3
WP_002853046.1\|1096224_1096527_+	type II secretion system protein	NA	NA	NA	NA
WP_002858296.1\|1096523_1097186_+	hypothetical protein	NA	NA	NA	NA
WP_002859148.1\|1097182_1097635_+	hypothetical protein	NA	NA	NA	NA
WP_002859147.1\|1097631_1098261_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_002852670.1\|1098238_1098871_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_002873290.1\|1098860_1099673_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_002852847.1\|1099669_1100356_-	endonuclease III domain-containing protein	NA	NA	NA	NA
WP_052786489.1\|1100352_1101114_-	ATP-binding protein	NA	NA	NA	NA
WP_115766827.1\|1101115_1104052_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_002868630.1\|1104051_1104447_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_002866112.1\|1104383_1105286_-	M23 family metallopeptidase	A0A2D0ZM66	Rhodococcus_phage	2.0e-18	46.4
WP_079461874.1\|1105272_1106457_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_002873286.1\|1106422_1107820_-	hypothetical protein	NA	NA	NA	NA
WP_002867193.1\|1107803_1108316_-	hypothetical protein	NA	NA	NA	NA
WP_002873285.1\|1108312_1110742_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	5.3e-154	39.9
WP_052786493.1\|1110751_1111723_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.7e-50	45.8
WP_002873283.1\|1111722_1113303_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_052786494.1\|1113295_1113568_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.5e-09	40.0
WP_115766828.1\|1113540_1114866_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_002873281.1\|1115102_1116299_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.1e-67	40.8
WP_002858067.1\|1116438_1117662_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_002873279.1\|1117671_1118559_+	aspartate carbamoyltransferase catalytic subunit	Q84489	Paramecium_bursaria_Chlorella_virus	3.6e-28	32.7
WP_052786497.1\|1118562_1120284_+	M3 family oligoendopeptidase	A0A1X9I5X5	Streptococcus_phage	4.9e-13	20.9
WP_052786498.1\|1120277_1120715_+	hypothetical protein	NA	NA	NA	NA
WP_052786499.1\|1120711_1122787_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	1.4e-94	36.0
WP_002865069.1\|1122783_1123602_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_002852854.1\|1123595_1123823_+	carbon storage regulator CsrA	NA	NA	NA	NA
WP_002865329.1\|1123819_1124587_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002853449.1\|1124583_1125036_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.1e-19	40.3
WP_002853867.1\|1125046_1125649_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_002856038.1\|1125648_1125939_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A218MMY6	uncultured_virus	2.2e-14	50.6
WP_002865327.1\|1125935_1128065_+	AAA domain-containing protein	K4FB40	Cronobacter_phage	4.2e-131	45.0
WP_002853966.1\|1128039_1128687_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA

DBSCAN-SWA_3

1752778 : 1764494

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002855578.1\|1752778_1754350_+	single-stranded-DNA-specific exonuclease RecJ	A0A0R6PDC6	Moraxella_phage	3.4e-53	47.4
WP_079261572.1\|1754403_1755441_+	type II asparaginase	NA	NA	NA	NA
WP_070311052.1\|1756030_1756753_-	capsular biosynthesis protein	E3SJ89	Synechococcus_phage	8.4e-15	26.3
WP_002903942.1\|1756749_1758273_-	hypothetical protein	B2ZYD9	Ralstonia_phage	5.3e-35	27.5
WP_014516848.1\|1758269_1758668_-	capsule biosynthesis phosphatase	A0A2K9L0P7	Tupanvirus	1.7e-09	41.0
WP_002903935.1\|1758707_1760627_-	hypothetical protein	E3SJ94	Synechococcus_phage	2.9e-06	27.8
WP_002903931.1\|1760620_1762480_-	methyltransferase domain-containing protein	M4QRS6	Synechococcus_phage	3.0e-56	40.2
WP_002826454.1\|1762476_1762806_-	hypothetical protein	NA	NA	NA	NA
WP_014516850.1\|1762808_1763144_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_060786364.1\|1763136_1763862_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	1.2e-29	33.6
WP_002826458.1\|1763855_1764494_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	2.2e-35	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage