CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012224	Campylobacter jejuni strain CJ066CC508 chromosome, complete genome	2 crisprs	DEDDh,WYL,cas2,cas1	0	2	1	0

1. NZ_CP012224

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012224_1

• CRISPR_ID: NZ_CP012224_1
• CRISPR_location: 1300896-1300975
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP012224_1

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

spacers of NZ_CP012224_1

>1.1|1300919|34|NZ_CP012224|CRISPRCasFinder
TTTTTTAGCTTTATACTCAGCCTTACTCATATAA

CRISPR arrays and Neighbor proteins around NZ_CP012224_1

CRISPR arrays

The CRISPR arrays of NZ_CP012224_1

>merge|NZ_CP012224|1|1300896-1300975|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP012224|1|1|1300896-1300975|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012224.1|WP_002880396.1|1298863_1299862_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NZ_CP012224.1|WP_052775677.1|1305428_1306550_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP012224.1|WP_002922774.1|1303654_1304074_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP012224.1|WP_052775678.1|1307803_1309873_-|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl|CDD|226093
NZ_CP012224.1|WP_002922791.1|1294665_1296159_-|hydrogenase-small-subunit	unknown	unknown	gnl|CDD|224654
NZ_CP012224.1|WP_002922780.1|1297658_1298861_-|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_CP012224.1|WP_002862071.1|1299921_1300467_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|223985
NZ_CP012224.1|WP_002922775.1|1301277_1302648_-|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl|CDD|100091
NZ_CP012224.1|WP_002922638.1|1310371_1311133_-|NTP-transferase-domain-containing-protein	unknown	unknown	gnl|CDD|224134
NZ_CP012224.1|WP_002922795.1|1292606_1292831_+|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|224830
NZ_CP012224.1|WP_002887977.1|1306622_1307807_-|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl|CDD|226092
NZ_CP012224.1|WP_002922790.1|1296162_1296987_-|enoyl-ACP-reductase-FabI	unknown	unknown	gnl|CDD|181416
NZ_CP012224.1|WP_074470094.1|1309869_1310382_-|adenylyl-sulfate-kinase	unknown	unknown	gnl|CDD|235498
NZ_CP012224.1|WP_002877383.1|1302769_1303306_+|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl|CDD|181433
NZ_CP012224.1|WP_002922782.1|1296990_1297662_-|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NZ_CP012224.1|WP_002922793.1|1292827_1294669_+|ferrous-iron-transport-protein-B	unknown	unknown	gnl|CDD|223447
NZ_CP012224.1|WP_052775676.1|1304070_1305432_-|cytochrome-P450	unknown	unknown	gnl|CDD|225035
NZ_CP012224.1|WP_002922796.1|1291184_1292525_+|MmgE/PrpD-family-protein	unknown	unknown	gnl|CDD|377179
NZ_CP012224.1|WP_002922777.1|1300494_1300815_+|ribosome-silencing-factor	unknown	unknown	gnl|CDD|223870
NZ_CP012224.1|WP_002825806.1|1303306_1303654_+|holo-ACP-synthase	unknown	unknown	gnl|CDD|223807

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP012224.1|WP_002880396.1|1298863_1299862_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	9.08437e-168
NZ_CP012224.1|WP_052775678.1|1307803_1309873_-|capsular-polysaccharide-biosynthesis-protein	gnl|CDD|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP012224.1|WP_002922791.1|1294665_1296159_-|hydrogenase-small-subunit	gnl|CDD|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	4.40469e-156
NZ_CP012224.1|WP_002922780.1|1297658_1298861_-|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP012224.1|WP_002862071.1|1299921_1300467_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl|CDD|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	5.80445e-58
NZ_CP012224.1|WP_002922775.1|1301277_1302648_-|phosphoglucosamine-mutase-PgmL	gnl|CDD|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP012224.1|WP_002922638.1|1310371_1311133_-|NTP-transferase-domain-containing-protein	gnl|CDD|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.4249e-74
NZ_CP012224.1|WP_002922795.1|1292606_1292831_+|ferrous-iron-transport-protein-A	gnl|CDD|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.93923e-21
NZ_CP012224.1|WP_002887977.1|1306622_1307807_-|capsule-polysaccharide-modification-protein-KpsS	gnl|CDD|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP012224.1|WP_002922790.1|1296162_1296987_-|enoyl-ACP-reductase-FabI	gnl|CDD|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP012224.1|WP_074470094.1|1309869_1310382_-|adenylyl-sulfate-kinase	gnl|CDD|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	3.16368e-101
NZ_CP012224.1|WP_002877383.1|1302769_1303306_+|flagellar-basal-body-associated-protein-FliL	gnl|CDD|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.16937e-91
NZ_CP012224.1|WP_002922782.1|1296990_1297662_-|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	6.47031e-85
NZ_CP012224.1|WP_002922793.1|1292827_1294669_+|ferrous-iron-transport-protein-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP012224.1|WP_052775676.1|1304070_1305432_-|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.64031e-78
NZ_CP012224.1|WP_002922796.1|1291184_1292525_+|MmgE/PrpD-family-protein	gnl|CDD|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	1.22538e-116
NZ_CP012224.1|WP_002922777.1|1300494_1300815_+|ribosome-silencing-factor	gnl|CDD|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	2.40287e-36
NZ_CP012224.1|WP_002825806.1|1303306_1303654_+|holo-ACP-synthase	gnl|CDD|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40

Protein sequences

>NZ_CP012224.1|WP_002922777.1|1300494_1300815_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKTKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKR
>NZ_CP012224.1|WP_002862071.1|1299921_1300467_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP012224.1|WP_002880396.1|1298863_1299862_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDSFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP012224.1|WP_002922780.1|1297658_1298861_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMAQVYVNDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP012224.1|WP_002922782.1|1296990_1297662_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEMIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENSIKEILSVNHCSGVLIGSAALKVENFIKLIKG
>NZ_CP012224.1|WP_002922790.1|1296162_1296987_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAQLAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLDEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP012224.1|WP_002922791.1|1294665_1296159_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDVNIITTLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQNFDENSMPSKDFWKYLEMSFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVNKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP012224.1|WP_002922793.1|1292827_1294669_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSKFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFISLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLYIAKILLN
>NZ_CP012224.1|WP_002922795.1|1292606_1292831_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNAIIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP012224.1|WP_002922796.1|1291184_1292525_+|MmgE/PrpD-family-protein
MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTEKNTPIWVNDQKLDPIYAAMLDGIASHALDFDDTHTEAILHASAILTPLCLSYGFHVSKDAKKITKAFIIGWEIAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIIVAHFAKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELSKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLESYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP012224.1|WP_002922775.1|1301277_1302648_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDEIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKIMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFSLFNEIKARLKN
>NZ_CP012224.1|WP_002877383.1|1302769_1303306_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEETKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP012224.1|WP_002825806.1|1303306_1303654_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP012224.1|WP_002922774.1|1303654_1304074_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILLRNLDKQTIGK
>NZ_CP012224.1|WP_052775676.1|1304070_1305432_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAIIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKREL
>NZ_CP012224.1|WP_052775677.1|1305428_1306550_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKTDLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKIGIMQERIKLFANTIVDKLKQNESKQDYELILVAHSVGTIVCIEVLECILRQHLDLSLLCKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP012224.1|WP_002887977.1|1306622_1307807_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIRMEKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP012224.1|WP_052775678.1|1307803_1309873_-|capsular-polysaccharide-biosynthesis-protein
MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQTKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDIIQTLAKYKDIEKANSNRLFMLGFTLWKRHFIKPFFKAKDNEIIFLNSFKSLVRYKLKEDDKFFIWGKKYDENTLKNLLLVKAKEQNLTNFSPKVSLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKPSKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETRILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKHRCERRTRKLSLEELVAGALITYPRYINPKTKTLCEIEVCLDIMLNLQKDYFSKKHIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP012224.1|WP_074470094.1|1309869_1310382_-|adenylyl-sulfate-kinase
MMNSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYFDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELMQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NZ_CP012224.1|WP_002922638.1|1310371_1311133_-|NTP-transferase-domain-containing-protein
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMINGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDE

Crispr_ID: NZ_CP012224_2

• CRISPR_ID: NZ_CP012224_2
• CRISPR_location: 1423381-1423547
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: cas2,cas1

Consensus repeat of NZ_CP012224_2

Consensus_repeat	Method
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder

spacers of NZ_CP012224_2

>2.1|1423416|31|NZ_CP012224|CRISPRCasFinder
CCATTAGTTTTTAAAGGGTGTAAGTATAACG
>2.2|1423482|31|NZ_CP012224|CRISPRCasFinder
ATTCAATGTTGTGTAAAGCGATAATGGTATG

CRISPR arrays and Neighbor proteins around NZ_CP012224_2

CRISPR arrays

The CRISPR arrays of NZ_CP012224_2

>merge|NZ_CP012224|2|1423381-1423547|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCCATTAGTTTTTAAAGGGTGTAAGTATAACGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATTCAATGTTGTGTAAAGCGATAATGGTATGTTTTAGCCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP012224|2|2|1423381-1423547|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCATTAGTTTTTAAAGGGTGTAAGTATAACG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATTCAATGTTGTGTAAAGCGATAATGGTATG
TTTTAGCCCCTTTTTAAATTTCTTTATGGTAAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012224.1|WP_002851546.1|1433841_1434291_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_CP012224.1|WP_002867075.1|1432739_1433777_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
NZ_CP012224.1|WP_002867072.1|1431287_1432037_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_CP012224.1|WP_002851502.1|1417159_1417873_-|hypothetical-protein	unknown	unknown	gnl|CDD|225916
NZ_CP012224.1|WP_002855427.1|1429635_1430625_-|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NZ_CP012224.1|WP_052775653.1|1424115_1425006_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NZ_CP012224.1|WP_002826882.1|1430685_1431291_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NZ_CP012224.1|WP_002921301.1|1421213_1421657_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391
NZ_CP012224.1|WP_002851537.1|1416993_1417185_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|236534
NZ_CP012224.1|WP_002851264.1|1413551_1414193_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NZ_CP012224.1|WP_002921304.1|1423691_1424123_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_CP012224.1|WP_002921299.1|1418176_1419325_-|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NZ_CP012224.1|WP_002921302.1|1421653_1422070_+|GyrI-like-domain-containing-protein	unknown	unknown	gnl|CDD|214874
NZ_CP012224.1|WP_044306280.1|1428160_1429615_+|anaerobic-C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl|CDD|225611
NZ_CP012224.1|WP_002868022.1|1432011_1432743_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl|CDD|225539
NZ_CP012224.1|WP_002921303.1|1422072_1423263_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NZ_CP012224.1|WP_079264288.1|1414189_1416994_-|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|239153
NZ_CP012224.1|WP_002779488.1|1420991_1421213_+|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|224888
NZ_CP012224.1|WP_052775654.1|1434417_1435638_-|glucose-6-phosphate-isomerase	unknown	unknown	gnl|CDD|235168
NZ_CP012224.1|WP_002921300.1|1419448_1420990_+|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP012224.1|WP_052775653.1|1424115_1425006_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	2.9e-98	323.1	9.7
NZ_CP012224.1|WP_002921304.1|1423691_1424123_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	3.3e-58	189.7	1.3

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP012224.1|WP_002851546.1|1433841_1434291_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP012224.1|WP_002867075.1|1432739_1433777_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.51502e-33
NZ_CP012224.1|WP_002867072.1|1431287_1432037_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.20349e-93
NZ_CP012224.1|WP_002851502.1|1417159_1417873_-|hypothetical-protein	gnl|CDD|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP012224.1|WP_002855427.1|1429635_1430625_-|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP012224.1|WP_052775653.1|1424115_1425006_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.05844e-120
NZ_CP012224.1|WP_002826882.1|1430685_1431291_+|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.12902e-70
NZ_CP012224.1|WP_002921301.1|1421213_1421657_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	4.82364e-43
NZ_CP012224.1|WP_002851537.1|1416993_1417185_-|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP012224.1|WP_002851264.1|1413551_1414193_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP012224.1|WP_002921304.1|1423691_1424123_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.28646e-58
NZ_CP012224.1|WP_002921299.1|1418176_1419325_-|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP012224.1|WP_002921302.1|1421653_1422070_+|GyrI-like-domain-containing-protein	gnl|CDD|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	5.92329e-11
NZ_CP012224.1|WP_044306280.1|1428160_1429615_+|anaerobic-C4-dicarboxylate-transporter-DcuC	gnl|CDD|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	7.97176e-72
NZ_CP012224.1|WP_002868022.1|1432011_1432743_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.02462e-101
NZ_CP012224.1|WP_002921303.1|1422072_1423263_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	3.0947e-140
NZ_CP012224.1|WP_079264288.1|1414189_1416994_-|formate-dehydrogenase-subunit-alpha	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP012224.1|WP_002779488.1|1420991_1421213_+|MoaD/ThiS-family-protein	gnl|CDD|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP012224.1|WP_052775654.1|1434417_1435638_-|glucose-6-phosphate-isomerase	gnl|CDD|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP012224.1|WP_002921300.1|1419448_1420990_+|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	7.43923e-120

Protein sequences

>NZ_CP012224.1|WP_002921303.1|1422072_1423263_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKALKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHIGVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNVEFKNGCILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP012224.1|WP_002921302.1|1421653_1422070_+|GyrI-like-domain-containing-protein
MIQEIEEFSIYGVSVQTNEELESDLNSSLIFPLWKKFHSIFGVPDEIYSVYYDYKNTPKLEYKICVGVKNPHEKGEKICIKGGKYMLFEDLGKPEIIAPKLWQNINEFFKNSSLQRKFDTDFEFYTTNKTQIYISMKE
>NZ_CP012224.1|WP_002921301.1|1421213_1421657_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLK
>NZ_CP012224.1|WP_002779488.1|1420991_1421213_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP012224.1|WP_002921300.1|1419448_1420990_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGIPVPPDQDGSPHDPILAGKERIYRFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPKDGEFKLESAYYDRDKMMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP012224.1|WP_002921299.1|1418176_1419325_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP012224.1|WP_002851502.1|1417159_1417873_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP012224.1|WP_002851537.1|1416993_1417185_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP012224.1|WP_079264288.1|1414189_1416994_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPINTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP012224.1|WP_002851264.1|1413551_1414193_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP012224.1|WP_002921304.1|1423691_1424123_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNARALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP012224.1|WP_052775653.1|1424115_1425006_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLRDINIIVLESLQVSLSSALFNAFAKHKIILLTCDETHSINGIFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVTNFKNALLYEDELKIVKFDD
>NZ_CP012224.1|WP_044306280.1|1428160_1429615_+|anaerobic-C4-dicarboxylate-transporter-DcuC
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIELKIQK
>NZ_CP012224.1|WP_002855427.1|1429635_1430625_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP012224.1|WP_002826882.1|1430685_1431291_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP012224.1|WP_002867072.1|1431287_1432037_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFS
>NZ_CP012224.1|WP_002868022.1|1432011_1432743_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP012224.1|WP_002867075.1|1432739_1433777_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP012224.1|WP_002851546.1|1433841_1434291_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP012224.1|WP_052775654.1|1434417_1435638_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLSLIDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHKEGENLAIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTRKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012224_2	2.1|1423416|31|NZ_CP012224|CRISPRCasFinder	1423416-1423446	31	MN530981	Campylobacter phage DA10, complete genome	32318-32348	1	0.968
NZ_CP012224_2	2.1|1423416|31|NZ_CP012224|CRISPRCasFinder	1423416-1423446	31	MT774405	CrAssphage cr115_1, complete genome	65541-65571	7	0.774
NZ_CP012224_1	1.1|1300919|34|NZ_CP012224|CRISPRCasFinder	1300919-1300952	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.1|1423416|31|NZ_CP012224|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ccattagtttttaaagggtgtaagtataacg	CRISPR spacer
ccattagtttttaaagggtgtaagtataact	Protospacer
****************************** 

2. spacer 2.1|1423416|31|NZ_CP012224|CRISPRCasFinder matches to MT774405 (CrAssphage cr115_1, complete genome) position: , mismatch: 7, identity: 0.774

ccattagtttttaaagggtgtaagtataacg	CRISPR spacer
ccataagtttttaaaaggtgtaagtttccat	Protospacer
**** **********.********* *    

3. spacer 1.1|1300919|34|NZ_CP012224|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **    

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1323774 : 1334824	14	Acanthocystis_turfacea_Chlorella_virus(20.0%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP012224|1323774:1334824|DBSCAN-SWA
ATCATTTATTGCCGCCATCTTTATGAGGATTTTCTTTTTTTAAAAGCTCTTTAATTTGATCATAATTTAAACTTATAAATTCGGACGGACGAATGGCTTTATCATCAACATAAAATCCATCATACCCACACCAAGGTTTACCTATGATTATCTCATCATACGGTACATCATATTTTTTAAGCCAAGTGATAATTGTAGGCAAAGTATGAGTTTTAATTTTTTCAAGCTCACCATCAAACGTACGCATGTTGCGACTTGTGAAAATATTGATTTTAAAACCTTGTTTTTTATACTCTTTTAAAGTTTGAATTAAATCAAGATTTGGTTTTTTATCAATATAATCTACATTCTCTTCATCAATTGTCAAAGTTCCATCTAAATCAATAAGTAGAGTTTTCATATTCCCATAATCATAAAAATTTTAAAATATTTTTATGATTATATGCAATAAACCTTACAATTTATTTATTGCTTTAAAAATTTCTAAATCCTCAGGTATTCCAATGCCATGCATTTTGGAAAAATTAATATTATAAATACCTATTTTAGCACCGCTTTTTATAGCATAATTATAAACAGGACAAGTATAAAATTCATTATTAACTCTATCATTTTCTATAATCATATCTATAGCACTTTCAACAAATATTTTTCCTTTATTAAAAAAATAAATCCCAACTGTAGCAAATTCACTAATAGCTTCTTTTTCTTTTACTTCTACTACCAAATCATTATTTAATTTTGCAAATGACCATTTTGGGTTTTTTTCTTTATCAATAAAAGTCAATATCGAACCATCTAAACCTCGTTTGAAACTATCATTAATAAAATCAGCTATATCAACATCAACAATCTGATCAGAATTTGCTATCATCAATGGCGTATCATTATTAATATATTTTCTTGCATAAAGCACGGTACAAGCTGTTCCTTCTGTAAGTTTATCGATAGCTATAAATTCAACATTAAAATTATTTTTAATTTTATCAACTAACTTTTTTTCTTTAGTCAAATGTTCTTTTCTTGCTATTAAAATATATCTTGCACCTTTATATTTTAAATTTTCAAGCACTCTAACTATCATTGGCTTATCTAAAACATCGATAAAAGGCTTTGGTTTATCAAAACCAGCCTTTACAAAACGACTTCCAAGCCCAGCCATAGGAATCACTATATTCATTGACATTCTCCTAAATATTTATCATCATTAGCTCCTGGAAGTTTTACGACGACATTCGTTGTATCTTCCAAAGCTTCAAAATCTGTAGCTTCACCTGGATAAATCATCACTATATCGCCTTTAGAATATATCCTATCATTCATCCTTACTTTACCACTAATAATAACAGTAATTTCAGTTGCAATTTTATGATGATGTTTTTCTTCGGTATCACCTTTTTTATATTCTTTCACGCCAACTTCCACATTATTAGTTTTAAAAACACTTGGATCGAAATTTCCCACAAACCAACCACGAATCATTTCATCTAATTTATAATTTTTCACAATCAACCTTTCGGAATATCCAAATAAGCACGCAACTCAACAATTTTTTCATTATACCATTCTATGATATCCACACCTTCAAGTCTGGTTTCATCAAGCATTAAAATGAATTCTATAAAAGTTGTATTTTTATCTTGAAAAATATTTTTAGCACTAAAGCTTAGTTCTTTGCAACTATTGAAAATATTTTCAATAGCTTTTAAACATTCTTCTTTGCCTTCTATTCTTTTTACAACTGGATCTTCTAAAACAAAATTCTCATTTAACAAATTTGCTACTTCTTTTATATCTTTTTTATTAAAAGCATTAATATATTTTTCAGTTAATTTTTTAAGCATTTTTAATCCTTTCATATTCATTAATTTTCGCATGAGAATAAAAAGTAAAATAACGATTTTTATCAATTGAAATATTTATAATTTTCTTGTCTTGTAAAATTAATTCATTTAATATTGAGGCGATAAAATATTTTCCTTCATAATTAACATCTTTTTTAATCATATCAAAGGCTGATGTTATGAAAAATTTAGCCTTATTAAAATAATAAAATCCCGCTATTGCATTTTTACTTACAGGTTTTTTTTCAAAAGCTTCTAAAACAAAATTATTTTCATCACATTTTACATAAGCCCATCTTGGATGAACACTCTCAAAGCTTAAAACACCTGCATCATTTAAAGATAAATCTGAAATAACTTCATTTAAATCACACTCAAAAATTTGATCCATATTAACAATAAGCAAAGAATCATTTAAATTAATCTCATCAATAGCCATCAAAACAGAACAAACCATGCCTTGTGTTTCATTTTTAAGAATAATAATTTTGCTTTGATTATTAGTTAAAACATTAATTGCATCATCCAAATGATAACGCTTTACGTCTTCTTCTTTAAGTATAAAAATAAAACGTTTACTCTTGACATTTTCATAATTTTTAACAAAATGTTCCAACATAGTTTTTCCACAAATTTCAATAAACGGCTTTGGAAAACCATCTTTTTCATTATCAAAAAAATAACTTTTACCCGCAATAGGAACCACTATATTTAACATTTCAATTCCTTTTCAAATTTAAAAATATGATTTTTAATATTTTCATAATTTACTTCGTTAACTTCCTCTACAATCATTACATTAGCTCCGCTTGCCCTAGCTGCTTTTATACCATTTTCATTATCCTCTACTATCATACATTCTTTAGGATTTAACTTTAATCTTTCTATAGCTTTAATATACATTTCAGGGTCAGGTTTTCCTTTTTTTACATCTTCATTGGAAATATAAAAATCTAAATAATTTTCAAGAGCTGATTTTTTCATCATTACTTCAATGCTATTGCGTATAGAATTAGAACAAACTGCCATTTTATAACCTTCAAATTTTAGCTTTGATAAAGCATATTCATGATGGAACCTAGGTTTGCATAAACTATAAACTATTTCCATGGTGTACTGCTGTTTTAATTCATTTATAAAAGAATGTAGCGATTTAGGCAACCCTCTTTCCAATGAAAGCATTTTTAATTTATCCTTAGTTGGCAAGCCATCAAAAGTTGTTAAGTGCTCATATCTAGTAATTTCCATGCCAAAAAGTTTTAAAGCTCTATTTAAAGCTTCATAATGCCAATCTTTAGCTTCAATCAAAACTCCATCCATATCGAAAATAATGGCTTTTATCTTAGTCATTAAAGAACCTCCTTGCCTCATCAGGATAATCAGTACAAATCATTAATTGTTCTTGTATATGTAACTCTTTTTCTATTTGTTTGTATTCTTGCCATTCTTTCTTATAATCTCTTTTATGAAGCTCTGAAGAAACTATACAAACTGATTTGCCATTATCAATATGCTTTTTTATGGTATTTTTATCTATCCAATGTGAATAAAACTCATCCATCCAAATACCACAAGCTTTATCATAAAAACTAGGCTCTTTTTCATATTCACTTTGTCTAGTAAAGACATTAAAATTCAAATCAATATAAAGTAAAGCATCAGGAACCGACATATCAAATACAAAATAATTTGTAATTTTATATTTTTGAATAAGTTTCTTAAGTGGAATTTGAAGTCCATCAGCCTTTATATTTAAGGCTAAAGGTAAATTTGTATTATATTTTTTATAAAGCTTAAAAAAATCTTCTAATTTTAAACAATTTTCACTTGCCATATCATGTGATATGACTATACCCCCCCCCATATCTCTTAAATCTGTTTCAAGACCGTATGAATTAAGAAAACTTCGATTAAAAGCAGTAATAGAATTTTTTTCCTGCTTGTTTTTCCAATAACCACGATGCGAAAGTATTTTCATTAGCTTAATCTCACTTTGAAATAAATTTTCCAATAACAATATATTAACATAATTTAGTATAATAAAATATTTAAAAAATTATTAAGAAAGGAAAATTATGCATTGTCCATTATGTCAAAGTGAAAATGATCAAAAAGAACTTTTTAAGACTTTAAATGTTTTTACTTCTTCAGGAAAACTTGATAAAAACCCGACCCAAATAAAAACAACTAATGATGACGGGGGGGGGTATTGTAAAGGTAACAACACTATAACTTTTACACAGTGTCAAGATTGTGGATACATCTATAACTCGATATTTGATTTAAATAAAATCTCTAAAGAATACCAAAGTGAAGGCTATTTTTCCCGCAAAATAGTCTCAAAAGCCATGAGCAATAATATAAAAACAATTAAAGATAAGTGTTTAAATTATATTAATAAAAATAGCATTTGCTTGGAAATTGCTCCAGGAAGTGGAGATATGGTAAATGCTCTTATACGTAATGTAAAATTTATGTATACCGTTGATCCATCTTTAGTTTCTTTAGAAATGGAAAATATAAATAATCTTAAACATATACACGGATTTTTTAATTTTAATATTTTAAAAGATAGACTAGAACATAAAATTGATTTCATTATATTTAGACATCTACTAGAACATATTAATACACCTCTAGGCTTTTTAAAAGATGTAGTTAAACTACTTGAAAACAATGGTATTATATATATAGAAGTTCCGAATATTGAAGAATTTATTGAATATAGAAGATTTTATGAAATTTTTAATGATCACTGCGGATATTATCAAAAAAATGTTTTAATTAACACTTTACAATCTTTAGGTTGTGAATTTATAGATGAAATTTTTCTTTATAGAGAACAACATATGGGATTATTTTTTAGAAAAAATACAAATATATGCGACATAAATAAGTTGAATTTTAAACTTTTTGATAAAAACATTTACACCTTATTTCAAGAAAATATAAGAAAATTAAATAATCTTTTACATGATTATAACAATATCGCAATTTATGGTTCTGGAGCCCATGGAAATACTATTATAACCTTTATTGATAACTCAGAAAAAATCAAAAAATGCTTTGATCTTGATATAAGAAAACAAGGAATGTATTTACAAAATTCTTCAATTATCATTCAAGAACCAAATATAGAAAATTTTAAAGATCTTGAAGCCATTATCATAGCAGCGCCTTTATATGAAGAAGAAATTATAAGATCTTTAAGAGAAAAAGGATATAAAGGAGATATTATTGCCACAGAAAAAGAGTTAAAAATAATATAGAATCACACTTGAGAATTATAAAAAAACCTATAATCCTCAGGCACGCCAATATCTATAAAATAATCATCAAAAATATGAGCTTTAGCTTTTAGTTTTTTATAATTTTCTTGCAAAAATTCTTCAAAAGAGAATTTTTCCTGCAAAGCAAAATCTTTAAAAATATCTTTATCTAAAAGATAAATTCCACCATTGATTAAACCTTGCTTTTTGAATACCTTTTCCTCAAAAGAAATTACAAGAGCTCGCCCATCAACATTTACCGTACCATATCTATCAAAATTATTCATTTGTTTTAGAGCAAGATAAATTTTACTTCCATTTAGCTTTAATTTACTTAAATCTATATCAAAAAAAGTATCGCCGTTTAAAACATAAGCTTCATTTTTTATAAATTTCAAAGCCTCTTTTATAGCTCCGCCTGTTCCTAGAGGCTCTTTTTCGATGCTGTATTTTATTTTTATACCTAAAAACTCATCTTTAAAATACTCTTTTATCACTTCATATTTGTATGATACTGCTAAGATAACTTCTTTTATGCCTTGCTTTTTAAGATACTCAAAAATAAATTCTAAAAAAGGCTTATCATTTATCGGTGCCATAGGTTTTGGAATATCTTTTATAACGCTTTTAAGTCTTGTTCCCAAACCACCGCAAAGTATTATTGCTTGCAAGAAAAACCTTTACCGAAAAGCTCTTCTTCGGTGATAGCACAAATAATATGCCCTATTAAAATATGTGCTTCTTGAATTCTTGGCGTGCAAGTTGAAGGCACTTTTATACAATAATCACAAAGCTCATTCATCGCTCCGCCACTAGCTCCGCTTAAGCCTATACTTATGATTCCTTTTTGCTTGCAAAGATCTAGAGCTTTTAAGATATTTTTACTATTTCCACTTGTAGAAATACCTATAAAAATATCTCCCTTAACACCTTGAGCTTGTACTTGTCTAGCAAATAAATTTTCATAACCATAATCGTTGCCAATAGCTGTTAAAATACTTGTATCTGTAGTAAGTGCAATACTTGCGATACCGGGTCTATCAAAATAAAACCTACTTACAAATTCCCCTGCGATATGCTGTGCATCAGCTGCACTACCACCGTTTCCTGCTAGTAAGGTTTTATTGCCATTTCGATAAGCTTTTATGACTTCTAATGAAGCATTCTTAATAAGAGTTATTAAATTCTCATCTTTTAAAATTTGCTCTTTTACTAAAATAGAATCTGTAAAATGTTCTTTTATATAGGAATTTAAATTCTCCATGATTTAACCCCCTCTTTTGCAAATGAAAAATCTTGCACATAACCTTGCTCTTTGCTTAAAGCTTTGATTAAGTTGTATTTTTTTGTAGGATCTACAAAGAAAAACATAAATCCACCAGCTCCTGCTCCGCTAGTTTTGCCGCTATAAGCTCCATTATCTATAGCTAGTTTATAAATTCTTTCAAGTTCATCATTGCTAACGATTTCTGAAATGATTTTTTTTGACTGCCAAGACTTGCCTAAAATTTTCGCCAAAGTATCAAAATCCGCCTTAAATAAAGCTTCTTTCATCTTTATAGCATCTTGTTTTATAGCGTGCATAGCTTCGAGGGATTTTTCATCTCCAAGCTTTCCTTTTTTATGCTCTTCTATATCTTTTGCTTCTCTTGTAATATTTGTAAAATAAAGCACAGTTCTAGCTTCAAGCTCACTAGCTATCCAGTTTTTAATACGCAAAGGATTAACAATGACTCTTTTATTATCATAAAATTCCATAAAATTAAAGCCACCAAAAGTTGCGGCGTATTGATCTTGTGCTCCGCCTACTATGCCTAAATCTTCTCTTTCTATCTCATAAGCAAGCTTAGCGATTTCATATTCTCCCAAAGGTAGATTAAGCCATTCTGCAAAGGCTTTTATAACCCCTACAACTAAGGTTGAGCTTCCGCCCAAACCACTACCACTTGGTACATCTGAGTATGTATGCAAAGAAAAACTTAAAGGTTTTTTTGTAAAATCTTTTACAATACGATTATAAATACTTTTGAAAATATCTAGTTTTCCATCATTTTCTAAACGCTCTTTACTTTCATACTCACAGTAAGAATTTGTATCAGGAGAATCAAAAATGATTTTTCCATCTTCTCTTTCGATCAAAGTACAATGTATATATAAAGATATAGTCGCATTTAAAACATAACCTGTGTATTTATCACAATATAAATTTATATCAGTCCCCCCACCTGCTAAACCAAGGCGAAGAGGAGTTTGCGTGCGTATAGTTTTCATTGAATTACTACTTATTTTGCTATAATTTATTATAAAAATTATAGCAAAATATACTTAACTTCTATATAATATTATTTAAACATTTGCAAAGCGATTAACTTTCATCATTTTAAACGCTCTTAAAAGTTCTTCAATGCCATCTTCTAAAGTATTATCTGGTTTCCAACCTGTAGCCTCTAATTTAGCATTTGAAACCAAATAATCTCTTTTATCCGGATCTTCGCCTATGCTGGCTGAATGGATATAAAAATCAGGAATATACTTTTTAATCGTTTCAGCAAGCTGTCTTTTAGTCAAATTTGCAGAACTTAATCCCATATTATAAGCCTGACCCTTCATCTTATCATAATTCTCAATTCCATGAATAAATCCTTTAACCACATCGCGAACATGAATATAATTGCGTCTAAAATGCTCTTCAAAAAGCACTATAAATTTATCTTTATATGCACGATAGGTAAAATCATTAACAAGTAAATCAAGTCTCATTCTAGGTGAAATTCCAAAAACAGTAGCCAAACGAAAAGTTACACAATTTCCTTTATCAAGCAAATATTGCTCCGCGTGCACTTTATCGATCCCATATTCTGAGATAGGACGCAAGGGAGATTCTTCAGTGCACATTGCATCTTTTTCTCCTATACCATAACCGCTATTTGTATTAGGATAAATAAATATTTGAGAAGGACTTGCAAAATCACTTATCATTTTTACAGCTTCATAATTGATCATTTTAGCTAATTTTGGATTTCTTTTACAAAGTGGAGCTCCAACCAAAGCAGCTAGGGGAATAATAATATCAGCTTTTGCTACCTCTTGCTTAATGAGATTTTCATCCATAGCGTCACCATTTATAAAAGTAAAATTTTTATTATGAGAACAAGATAAAAGAGAGATTTGATCAAACATCAAATTATCAATCACACAAACTTCATAACCTTTTTCGAGTAAAATCGGTGTTAAAACCGAACCTATATAACCTGCACCACCTGTAATTAAAACTTTTTTTGACATATTTTTCCTTTAAATCGATGGTTTTATCGATTTAAAGGAATTCTGCCTCTCTTAATTTCATTTCTCCAATGATTTAGCAAATCTTTAAGCATTTGTCTAACAGGAATTTCAGCTTTCCAATCGATAAAACTCTTTATTTTACTATTATCAAACATTTGATAGTCAGCATCAATAGGACGCATCCTATCTTCAACTTGTCTTACCTCAATACCCCCCCCCCATATCACTAAAATTTAGCAATATATCTATAACTTCAGGAAGTTTAAAAGCCTCTTCTCCTGCTATATTAAAAGCTTCTCCGCAAGGAATATTACCCTTTTGACTCTCAAGAGAAAGTAGATAATAAGCCCTTATAGCATCGCGACAATCTTGAAAGGTTCTTACACTCGAAAGATTTCCAACCTTGATAACAGGCTCTTGATAACCCGCTTCAATTAAAGCAATTTGTTTTGCAACTGTGCTTTCAAAAAACACATCGCTTCTTCTTGGGCCACTATGCGTTCCCATTCTTGTAACAAAAGTGCGAATGTTATAAGCTTCGCCATAAAATCTTCCCAAATAATCAGTGCCAATTTTGCTTATGCTATAAGGACTTGCACCGTGAAAAGCTGTTTCTTCATTAAGTTTAACACCTGTTTTTGCTTTACCATAAACTTCACTTGAAGAGCAGATATGTACTACAGGGTCATATCCATCTTTTGCCTTTAAAATTCTAATGTTTTCCAAAATATTTGCTGTTCCTATGATATTTGTTTGTAATGTTTCTATAGGTATATCAAAAGAAGTTTTTGGATAAGATTGAGCTGCTAGGTGAAAAATCACATCAGGCCTTTGACTCTCGAAAAGTTTTTGAAGACTAGAGTAATCATTTAAATCTGCATAAAAAATACTGATTCTATCTTTTTTATTAATCCTATCGCTTAAATGATAGATATTGTCCATAGGTTCTTGCCAACGCATCATACCTATAACATCATAGTCTGTGTTTTCTAGCAAGAAATCTGCCATTTGTGAGCCAACTTGCCCTGTAAATCCTGTAATTAATGCTGTTTTTTTCATGATTTATCCTATTGTCTTATATTTTGCTCTTTTAAATACCATTCATACATCATTTTAATGCCGTCTTCAAGCTTGATTTTTGCCTTCCAGCCTAAATTTTGCAATCTTGAACTATCTAACATTCTATCCATTGTAGAATCTGGTTTTGAATTGTTAAACACAATTTCACCCTTAAATCCAACAATATTTTTAATCAAAAAAGCAAGTTCTTTTATACTTAAAAATTCCCCACTTCCTACATTAAAATGCGGTTCATTAGATGAAACAATATCTTTAAAATCTATATTTTTCATCACATAAATAGAAGCATCAGCTAAATCTTTTGCATGAATAAATTCCCTAATTACACTACCGCCACCCCAAATTTCTACGCTATCTTTACTTACACCAAATTTTTGTAAATATTCCATTACTTGCTCTAAGGAATTCATTTGCAAATCCTTTAGAACCTCATCAATTTTATTTTCATCTAAAAGTTTTGCTAAATGAAATTTGCGAAGTAAAGCCGGTAAAACTTTTGCTTTTTGTAAATCAAACTCGGTTGTCTCTCCATACAGGTTTGCAAGATATAAAGTGATAAAATTTGTTCCATATTGTAAGTTATAACTTTCGCACATTTTTGTTCCTATAATTTTTGGCAAACCATATGCAATGGCTTTTAAATCTAGCTTTCCATCTAATAAATTCTCTTCTTTAATAGGATTTATAGCTTTTTGAGGGTAAGCCCAAGCAGATCCATAAAAAACAAGCTTTTTAACATTATTTTGATAAGATGAATGAATAATATTTGCTTGAAGTACGCTATTTTCATAAATTACATCGGCTGGAGTAAAAAGCCCTAAGGTATCAAGCTTGGCAGCACATAAAAAAACATATTCTGGTTTTTCTTTTGCGAAAAAATCAGTCACAGCTTTTTGATCTACTAAATCTAATTCTTTTCTTGTTTTTACGATAATATTATTAAAACCCTCATCTATAAGTGTATTATAAAGAGTTTTTCCCAAAGTGCCGCCATGCCCTGCTATATAAATTTTAGAATCTTTTTGCATCATTTATCCTTACTCATCGCTAAAATATCACGCTCTGAAAGGATAGGAGAATTTGTTGGCCAATCTATACCAATTCTTTCATCATTCCATGCATAAGTAAATTGATCATGTGCATCCATATATTCTCCTAAATAAGCACATTTATAGTAATACACTGCACTTTCACTGCTAACATAATGAGCATTTCCAAAACCTGCTGGAACTAAAATGATTTGCTGATTATCTTGATTTATGATGAATCTTTCATGCTTCAAATAAGTTGGTGAATCTTTTCTGCAATCAACCACAACTTGATGCACTTCTCCATAAACACAAGTGGCAAGCTTATAAGTTTTTACATCGCCATGGATACCGCGGATAACATTATGTTTAGAATGTATGAATTTATCGTGTATAAATTTTAATCCATTTGGCAAGAGTTTATCTATGGCTTCACTTGTAAAAGCTGTCCAAATTTCACCCCTTAAATCTCTAAATTTGTTAGGAGTTATAATATACACTCCTTTTAAAATTTTTGATTCTTGTATATCAAATTCTATTGCCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP012224|1323774:1334824|1333238_1334279_-|WP_002923011.1|DBSCAN-SWA
MQKDSKIYIAGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVDQKAVTDFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNNVKKLVFYGSAWAYPQKAINPIKEENLLDGKLDLKAIAYGLPKIIGTKMCESYNLQYGTNFITLYLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNSLEQVMEYLQKFGVSKDSVEIWGGGSVIREFIHAKDLADASIYVMKNIDFKDIVSSNEPHFNVGSGEFLSIKELAFLIKNIVGFKGEIVFNNSKPDSTMDRMLDSSRLQNLGWKAKIKLEDGIKMMYEWYLKEQNIRQ
>NZ_CP012224|1323774:1334824|1328888_1329557_-|WP_002931637.1|DBSCAN-SWA
MQAIILCGGLGTRLKSVIKDIPKPMAPINDKPFLEFIFEYLKKQGIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEAYVLNGDTFFDIDLSKLKLNGSKIYLALKQMNNFDRYGTVNVDGRALVISFEEKVFKKQGLINGGIYLLDKDIFKDFALQEKFSFEEFLQENYKKLKAKAHIFDDYFIDIGVPEDYRFFYNSQV
>NZ_CP012224|1323774:1334824|1324949_1325279_-|WP_002922027.1|DBSCAN-SWA
MKNYKLDEMIRGWFVGNFDPSVFKTNNVEVGVKEYKKGDTEEKHHHKIATEITVIISGKVRMNDRIYSKGDIVMIYPGEATDFEALEDTTNVVVKLPGANDDKYLGECQ
>NZ_CP012224|1323774:1334824|1326959_1327595_-|WP_052799753.1|DBSCAN-SWA
MKILSHRGYWKNKQEKNSITAFNRSFLNSYGLETDLRDMGGGIVISHDMASENCLKLEDFFKLYKKYNTNLPLALNIKADGLQIPLKKLIQKYKITNYFVFDMSVPDALLYIDLNFNVFTRQSEYEKEPSFYDKACGIWMDEFYSHWIDKNTIKKHIDNGKSVCIVSSELHKRDYKKEWQEYKQIEKELHIQEQLMICTDYPDEARRFFND
>NZ_CP012224|1323774:1334824|1330137_1331157_-|WP_002923023.1|DBSCAN-SWA
MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCTLIEREDGKIIFDSPDTNSYCEYESKERLENDGKLDIFKSIYNRIVKDFTKKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQDQYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELERIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFAKEGVKSWRI
>NZ_CP012224|1323774:1334824|1327692_1328886_+|WP_004314117.1|DBSCAN-SWA
MHCPLCQSENDQKELFKTLNVFTSSGKLDKNPTQIKTTNDDGGGYCKGNNTITFTQCQDCGYIYNSIFDLNKISKEYQSEGYFSRKIVSKAMSNNIKTIKDKCLNYINKNSICLEIAPGSGDMVNALIRNVKFMYTVDPSLVSLEMENINNLKHIHGFFNFNILKDRLEHKIDFIIFRHLLEHINTPLGFLKDVVKLLENNGIIYIEVPNIEEFIEYRRFYEIFNDHCGYYQKNVLINTLQSLGCEFIDEIFLYREQHMGLFFRKNTNICDINKLNFKLFDKNIYTLFQENIRKLNNLLHDYNNIAIYGSGAHGNTIITFIDNSEKIKKCFDLDIRKQGMYLQNSSIIIQEPNIENFKDLEAIIIAAPLYEEEIIRSLREKGYKGDIIATEKELKII
>NZ_CP012224|1323774:1334824|1334278_1334824_-|WP_002858844.1|DBSCAN-SWA
MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAIDKLLPNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHERFIINQDNQQIILVPAGFGNAHYVSSESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGIDWPTNSPILSERDILAMSKDK
>NZ_CP012224|1323774:1334824|1324227_1324953_-|WP_002922025.1|DBSCAN-SWA
MNIVIPMAGLGSRFVKAGFDKPKPFIDVLDKPMIVRVLENLKYKGARYILIARKEHLTKEKKLVDKIKNNFNVEFIAIDKLTEGTACTVLYARKYINNDTPLMIANSDQIVDVDIADFINDSFKRGLDGSILTFIDKEKNPKWSFAKLNNDLVVEVKEKEAISEFATVGIYFFNKGKIFVESAIDMIIENDRVNNEFYTCPVYNYAIKSGAKIGIYNINFSKMHGIGIPEDLEIFKAINKL
>NZ_CP012224|1323774:1334824|1329544_1330150_-|WP_002923024.1|DBSCAN-SWA
MENLNSYIKEHFTDSILVKEQILKDENLITLIKNASLEVIKAYRNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYENLFARQVQAQGVKGDIFIGISTSGNSKNILKALDLCKQKGIISIGLSGASGGAMNELCDYCIKVPSTCTPRIQEAHILIGHIICAITEEELFGKGFSCKQ
>NZ_CP012224|1323774:1334824|1326328_1326967_-|WP_002922037.1|DBSCAN-SWA
MTKIKAIIFDMDGVLIEAKDWHYEALNRALKLFGMEITRYEHLTTFDGLPTKDKLKMLSLERGLPKSLHSFINELKQQYTMEIVYSLCKPRFHHEYALSKLKFEGYKMAVCSNSIRNSIEVMMKKSALENYLDFYISNEDVKKGKPDPEMYIKAIERLKLNPKECMIVEDNENGIKAARASGANVMIVEEVNEVNYENIKNHIFKFEKELKC
>NZ_CP012224|1323774:1334824|1325281_1325617_-|WP_002922029.1|DBSCAN-SWA
MLKKLTEKYINAFNKKDIKEVANLLNENFVLEDPVVKRIEGKEECLKAIENIFNSCKELSFSAKNIFQDKNTTFIEFILMLDETRLEGVDIIEWYNEKIVELRAYLDIPKG
>NZ_CP012224|1323774:1334824|1323774_1324173_-|WP_002922023.1|DBSCAN-SWA
MKTLLIDLDGTLTIDEENVDYIDKKPNLDLIQTLKEYKKQGFKINIFTSRNMRTFDGELEKIKTHTLPTIITWLKKYDVPYDEIIIGKPWCGYDGFYVDDKAIRPSEFISLNYDQIKELLKKENPHKDGGNK
>NZ_CP012224|1323774:1334824|1325609_1326335_-|WP_002922035.1|DBSCAN-SWA
MLNIVVPIAGKSYFFDNEKDGFPKPFIEICGKTMLEHFVKNYENVKSKRFIFILKEEDVKRYHLDDAINVLTNNQSKIIILKNETQGMVCSVLMAIDEINLNDSLLIVNMDQIFECDLNEVISDLSLNDAGVLSFESVHPRWAYVKCDENNFVLEAFEKKPVSKNAIAGFYYFNKAKFFITSAFDMIKKDVNYEGKYFIASILNELILQDKKIINISIDKNRYFTFYSHAKINEYERIKNA
>NZ_CP012224|1323774:1334824|1331232_1332171_-|WP_002858841.1|DBSCAN-SWA
MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLSCSHNKNFTFINGDAMDENLIKQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVKMISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGNCVTFRLATVFGISPRMRLDLLVNDFTYRAYKDKFIVLFEEHFRRNYIHVRDVVKGFIHGIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSASIGEDPDKRDYLVSNAKLEATGWKPDNTLEDGIEELLRAFKMMKVNRFANV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002922023.1|1323774_1324173_-	HAD-IIIC family phosphatase	A0A2K9L0P7	Tupanvirus	1.2e-10	42.0
WP_002922025.1|1324227_1324953_-	LPS biosynthesis protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	1.3e-52	50.0
WP_002922027.1|1324949_1325279_-	hypothetical protein	NA	NA	NA	NA
WP_002922029.1|1325281_1325617_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002922035.1|1325609_1326335_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	6.0e-29	32.7
WP_002922037.1|1326328_1326967_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	3.8e-35	42.8
WP_052799753.1|1326959_1327595_-	hypothetical protein	NA	NA	NA	NA
WP_004314117.1|1327692_1328886_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_002931637.1|1328888_1329557_-	NTP transferase domain-containing protein	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	1.3e-06	27.6
WP_002923024.1|1329544_1330150_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.8e-15	34.4
WP_002923023.1|1330137_1331157_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.5
WP_002858841.1|1331232_1332171_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	7.9e-74	46.3
WP_002923011.1|1333238_1334279_-	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	7.5e-65	40.8
WP_002858844.1|1334278_1334824_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	3.7e-15	30.4