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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP031442 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome 1 crisprs WYL,csa3,DinG,DEDDh,cas3,cas2,cas1 0 1 1 0

Results visualization

1. NZ_CP031442
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031442_1 1138923-1139014 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP050083 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence 272569-272598 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP050106 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence 51838-51867 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP049733 Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence 263538-263567 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 562924-562953 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP025506 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence 42775-42804 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP050111 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence 52022-52051 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP021128 Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence 512956-512985 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP022668 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence 495523-495552 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 571257-571286 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP050088 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence 177039-177068 6 0.8
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP053207 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence 294346-294375 7 0.767
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 MH051248 Mycobacterium phage BigPhil, complete genome 31319-31348 7 0.767
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 KF017004 Mycobacteriophage Velveteen, complete genome 31319-31348 7 0.767
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 MT889380 Mycobacterium phage Coco12, complete genome 35394-35423 7 0.767
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 KM215148 Mycobacterium phage Cerasum, complete genome 31337-31366 7 0.767
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 KY702574 Mycobacterium phage Kingsley, complete genome 34127-34156 7 0.767
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NC_028844 Mycobacterium phage Phatniss, complete genome 35487-35516 7 0.767
NZ_CP031442_1 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder 1138954-1138983 30 NZ_CP007453 Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence 116511-116540 9 0.7

1. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcgtccttgacggcgatg	Protospacer
.**  *** ****** ************* 

2. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcgtccttgacggcgatg	Protospacer
.**  *** ****** ************* 

3. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcgtccttgacggcgatg	Protospacer
.**  *** ****** ************* 

4. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcggccttgacggcgatg	Protospacer
.**  *** ******.************* 

5. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcgtccttgacggcgatg	Protospacer
.**  *** ****** ************* 

6. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcgtccttgacggcgatg	Protospacer
.**  *** ****** ************* 

7. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcggccttgacggcgatg	Protospacer
.**  *** ******.************* 

8. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcgtccttgacggcgatg	Protospacer
.**  *** ****** ************* 

9. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcggccttgacggcgatg	Protospacer
.**  *** ******.************* 

10. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 6, identity: 0.8

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcatccttgttctcgtccttgacggcgatg	Protospacer
.**  *** ****** ************* 

11. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 7, identity: 0.767

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
gcctccttgttctcgtccttgacggcgatg	Protospacer
.*   *** ****** ************* 

12. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to MH051248 (Mycobacterium phage BigPhil, complete genome) position: , mismatch: 7, identity: 0.767

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
aacatctttttctcggcctcgacggcgacg	Protospacer
*  * **********.***.********. 

13. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to KF017004 (Mycobacteriophage Velveteen, complete genome) position: , mismatch: 7, identity: 0.767

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
aacatctttttctcggcctcgacggcgacg	Protospacer
*  * **********.***.********. 

14. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to MT889380 (Mycobacterium phage Coco12, complete genome) position: , mismatch: 7, identity: 0.767

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
aacatctttttctcggcctcgacggcgacg	Protospacer
*  * **********.***.********. 

15. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to KM215148 (Mycobacterium phage Cerasum, complete genome) position: , mismatch: 7, identity: 0.767

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
aacatctttttctcggcctcgacggcgacg	Protospacer
*  * **********.***.********. 

16. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to KY702574 (Mycobacterium phage Kingsley, complete genome) position: , mismatch: 7, identity: 0.767

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
aacatctttttctcggcctcgacggcgacg	Protospacer
*  * **********.***.********. 

17. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NC_028844 (Mycobacterium phage Phatniss, complete genome) position: , mismatch: 7, identity: 0.767

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
aacatctttttctcggcctcgacggcgacg	Protospacer
*  * **********.***.********. 

18. spacer 1.1|1138954|30|NZ_CP031442|CRISPRCasFinder matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 9, identity: 0.7

acaaactttttctcgaccttgacggcgatt	CRISPR spacer
ccgtgctttttttcgaccttgacggcttca	Protospacer
 *. .******.**************  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2409017 : 2420404 13 Erysipelothrix_phage(36.36%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage