CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048407	Thermaerobacter sp. PB12/4term chromosome, complete genome	10 crisprs	csa3,cas3,DinG,cas3HD,cas5,cas7b,cas8b1,cas6,WYL	0	13	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048407_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_1

489099-489196

Orphan

Consensus_repeat	Method
GGGGATCCGGCGGGCGGCCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048407_1

>merge|NZ_CP048407|1|489099-489196|CRISPRCasFinder
GGGGATCCGGCGGGCGGCCGGGGCGACGGCCCGGGTTTCCTCCGGGATCCCGGGGCCCCCTCCGCCGGCGGGGCGGGGGATCCGGCGGGCGACCGGGG

>NZ_CP048407|1|1|489099-489196|CRISPRCasFinder
GGGGATCCGGCGGGCGGCCGGGG	CGACGGCCCGGGTTTCCTCCGGGATCCCGGGGCCCCCTCCGCCGGCGGGGCG
GGGGATCCGGCGGGCGACCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116901057.1\|484319_485579_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133060
NZ_CP048407.1\|WP_116901048.1\|495742_496750_+\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|378467
NZ_CP048407.1\|WP_116901056.1\|486084_486750_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116901059.1\|480457_480862_-\|DUF192-domain-containing-protein	unknown	unknown	gnl\|CDD\|376876
NZ_CP048407.1\|WP_116901058.1\|481766_484178_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP048407.1\|WP_158556075.1\|496974_497433_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377255
NZ_CP048407.1\|WP_147308128.1\|493664_494543_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP048407.1\|WP_116901052.1\|491867_492854_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP048407.1\|WP_116901126.1\|497469_498006_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_CP048407.1\|WP_116901062.1\|476826_477975_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|235878
NZ_CP048407.1\|WP_116901054.1\|489819_490290_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP048407.1\|WP_116901053.1\|490763_491621_+\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|237235
NZ_CP048407.1\|WP_116901049.1\|494523_495552_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP048407.1\|WP_116901051.1\|493095_493659_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NZ_CP048407.1\|WP_116901060.1\|478882_480202_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP048407.1\|WP_116901061.1\|478290_478902_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NZ_CP048407.1\|WP_116901064.1\|473392_474745_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349874
NZ_CP048407.1\|WP_116901055.1\|486858_489096_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213218
NZ_CP048407.1\|WP_116901125.1\|498465_499482_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270255
NZ_CP048407.1\|WP_116901063.1\|474843_476568_-\|glyoxalase	unknown	unknown	gnl\|CDD\|223477

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116901057.1\|484319_485579_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133060	cd06438, EpsO_like, EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.	2.31769e-85
NZ_CP048407.1\|WP_116901048.1\|495742_496750_+\|DUF4198-domain-containing-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	3.6564e-23
NZ_CP048407.1\|WP_116901059.1\|480457_480862_-\|DUF192-domain-containing-protein	gnl\|CDD\|376876	pfam02643, DUF192, Uncharacterized ACR, COG1430. Two structures have been solved for members of this large (>500 members) family of bacterial proteins present mostly in environmental bacteria and metagenomes (distant homologs are also present in several Plasmodium species). TOPSAN analysis for Structure 3pjy shows that there is much similarity with the other solved structure, Structure 3m7a, solved for UniProt:Q2GA55 (Saro_0823), a homolog of Thermotoga maritima TM1668, UniProt:Q9X1Z6., The homolog in Caulobacter crescentus (CC1388), UniProt:Q9A8G6, is associated with CspD, a cold shock protein (CC1387), UniProt:Q9A8G7. However, the genomic context of UniProt:Q2GA55 is most conserved with a putative xylose isomerase, suggesting a possible role in extracellular sugar processing. Saro_0821, UniProt:Q2GA57, is annotated as an AMP-dependent synthetase and ligase. Structure 3m7a structure corresponds to the C-terminal (27-165) fragment of the YP_496102 (Saro_0823) protein and it is structurally unique, as the best hits from Dali have a Z-score of 3.8 (1nt0, 2j1t, 3kq4) and it is thus a likely candidate for a new fold. Interestingly, many of the top Dali hits are involved in sugar metabolism. There are no obvious active site-like cavities on the protein surface of 3m7a (http://www.topsan.org/Proteins/JCSG/).	6.50992e-19
NZ_CP048407.1\|WP_116901058.1\|481766_484178_+\|hypothetical-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	2.25333e-07
NZ_CP048407.1\|WP_158556075.1\|496974_497433_+\|hypothetical-protein	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	1.5287e-21
NZ_CP048407.1\|WP_147308128.1\|493664_494543_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.6224e-57
NZ_CP048407.1\|WP_116901052.1\|491867_492854_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP048407.1\|WP_116901126.1\|497469_498006_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	1.20822e-90
NZ_CP048407.1\|WP_116901062.1\|476826_477975_-\|AAA-family-ATPase	gnl\|CDD\|235878	PRK06851, PRK06851, hypothetical protein; Provisional.	6.00387e-103
NZ_CP048407.1\|WP_116901054.1\|489819_490290_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.46894e-31
NZ_CP048407.1\|WP_116901053.1\|490763_491621_+\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|237235	PRK12857, PRK12857, class II fructose-1,6-bisphosphate aldolase.	6.5204e-164
NZ_CP048407.1\|WP_116901049.1\|494523_495552_-\|hypothetical-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.04588e-27
NZ_CP048407.1\|WP_116901051.1\|493095_493659_+\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	4.98661e-33
NZ_CP048407.1\|WP_116901060.1\|478882_480202_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	4.07148e-126
NZ_CP048407.1\|WP_116901061.1\|478290_478902_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	8.79733e-22
NZ_CP048407.1\|WP_116901064.1\|473392_474745_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349874	cd03877, M28_like, M28 Zn-peptidase, many containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Some proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.	8.85518e-22
NZ_CP048407.1\|WP_116901055.1\|486858_489096_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213218	cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C. MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.60583e-115
NZ_CP048407.1\|WP_116901125.1\|498465_499482_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270255	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.11564e-87
NZ_CP048407.1\|WP_116901063.1\|474843_476568_-\|glyoxalase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	5.05165e-62

>NZ_CP048407.1|WP_116901055.1|486858_489096_+|ABC-transporter-ATP-binding-protein
MNRWNRRRSSSSGAAPSPAGATPGSGAARSGQGTGLPGVSDGAAEPSGTAGTAGTGRKEPGAGAWAAYRQLLRPFRTQAVLAVALLLARSGLDLGIPQIFRWLLDVAIPAGDLRRLAMGALVALALVGTRAAVHYAAVYVSFDLTQRVVHDLRVRLYRHILSLPLAFFHRERQGAVVARLTTDIGAVERFVQAVFARLAGEFGGVLAVVATVVALQPALGLGLVLLLPLAGAWFYLQTVRIRSLSREIQAQAGRIGAAATEAVGAIATVKAFGGETREAGRLAAASQRYRALNMARRRFIGRMESGADLMGNLGLLLLFFAGGYLAIAGRLSPGSLAALVLYVRMMLAPVRSLVNFHLILQEGVAAMERVQEILQLPAEGVLPAGGTREAAASGGPDRPLPPAAGGVVREGADQDGRGAVAVPAISGTHPSRPAGGPAFPQGAPRPPGGPGAPGGGGGAGAGGAEARTWPEAAVRPARPSPAGAALELAGVWFRYRPGDPPVLRGVNLRVEPGERIALVGPSGAGKTTLLHLIPRFYDPEQGAVLLNGRDVRRFDLAELRRQVAWVMQDPVLFSGTVADNIAYGCPGASRAAIQRAAELANAAAFIAALPQGYDTPVGERGVRLSGGQRQRIAIARALLRRPRLLLLDEATSFQDAESEERIHQALDLLEAGGCTSIVVAHRLSTALRADRIVVLDGGRVVETGTHAQLIARGGLYARLYRTFFSPRGPGQPRPGLPAGGTGTGD
>NZ_CP048407.1|WP_116901056.1|486084_486750_+|hypothetical-protein
MKRTRRRTSAALAWGLFLAAIALAAAACGAPPLEPEPVTLYDVEGWPPFDRFLPAAELAGDVRVTARVTVRPVTRPGPDPRNPSHQVPWRDVHFEVRIEPAGGRALRGVVAGVRLNEALAPWIPSGLLVFGSDMHAPLDVGPGTESPGLLVSRVTGVPDPSVLSGEERRALRAALQTPMWLKLTWDGYPRYIRLEPGEDIQYQGLEVFGETGASGPGAGNR
>NZ_CP048407.1|WP_116901057.1|484319_485579_+|glycosyltransferase-family-2-protein
MTYLDPAATVIGTPAWPLWLLRGLEAAVVFVVVYNLAVYLGGLRNPRPVPRTAPRARFAVLIPAHNEEAVIGPLIESLWRQEYPRHLYDVFVIADNCTDGTAAAARAAGARVWQRFDDRRRGKQYAVAYALERIASLGRRYDAVVMFDADNLVQPNFLQVMNDHLAAGEKIIQAYVDAKNPDDSWVAAAFAFSFWMSNRWRLQARHNWGLCGALAGTGMCIAWEVLERVGWDVNTLTEDLEFSAKALLHGYVTTFARETRIYDEKVTGFVASCRQRVRWARGNVQVMLIHAPRLLWAGLRQLDPVKFEFVFDLTRPLHLVVTAVASLLNLVAGPALAQWGWVPLPEWPVRLTALFALVGPLLVLVLDRLPLRPYRFIPLLPLFQYSWIALVLWALLTPRNRQWVPTVHTRAVRLGELSR
>NZ_CP048407.1|WP_116901058.1|481766_484178_+|hypothetical-protein
MIGLEGIWEVTWVGRAGPPVRVWVPQEPPCPPGHVPPRAVVYRRDVEVPPGLLGGKDVRAYLELAMVLGRARVQVNGDAYDVPGAGQVTASLDVTRSLRPGTNRLAVEVAGPEDGDGGRRWSRGRSRWPVQPAGARADAAPRDVQAVAWGAWARPEAVPPGFLPPGLAGPVRLRFVRGVVPVAVSWFFRDEEEGAGSGSGAAGRGGGRAGGRPLPGQAEPWERPEPAGPLPLCVPWRPGVGEKTPDPPAGPDRTVVYGCARVRYLATEPVRGRCWIEIEPDGFDAPGARAAWDVEAQPPGGTWEVWFALPSPRLWTVGDWGRPDLYRLRAGFEPAGGPAQAPVVPAGSGEPGSPAAAWGPAPAVEVLAGVRFIRRLEGAWYLNWQPLRFRGACLLPLASWPGAVSPRQARAWVRRARALGLNALRVYAHMAHPALYEAASRLGVVLWQDLPPVGCHTPEAAAALGEQLAAWVEEAGRWPAVVAWSICPEPALPLAGERPRGPGIRTPAGIRIPRLQATGSRVAAGLARQLAALDPGRPVLERAGAPSWTRIGGAMRFLPAGDVPDPGALERRWRLAPHVTVIASLGWPAGDQTAQARFVRYSGDALRRRPYPASGGFFFALNDPPGGPAYGLYTAEGRPREAARACREVLAPVRLLVGAWPRRCRPGRGFRLPVWLVNDTARPLTGRWTWQLVAGRQVLAAGTMACGAAARSLVPVGWITGRWPQEAVPSPSAGPAAGAGRDEPGPPARALPLVLYLDLQVGGRLVRSAYPLPAWLPGPAGAGAAAAGGAGDPGGTPERLRSS
>NZ_CP048407.1|WP_116901059.1|480457_480862_-|DUF192-domain-containing-protein
MRKVNGMEGGAGSGPPGRGPVRVVNRTRGTELGHAIGVAASWRSRSRGLLGWDELAPGEGLWLWPCRWVHSLGMGFPLDVVHLDRAGRVVAAYRLVPGRVGPLVWRGHSVLELPAGTLAATGTRPGDRLAWEPV
>NZ_CP048407.1|WP_116901060.1|478882_480202_+|glutamine-synthetase
MRRPPAEPVPPDEPARRLAQQGVQLVQLVYADVLGVQKGLTLPVQQAAAAWDGGVRVDGASLEGFMRVEEREMRLRAGGEQVFVLPWEPAGGRVAMVPAGIYTRDGRPFDGCPRERLQAAVRRLDGLGVTVELAFEMEFYLLRRRRGRPEVRVPDRTGYLDLSVRDAGEPVRQEIALALEGMGIVVESVHHAVAPAQHEIDLGWQPPLTAADHLLIARRAVYAVAERHGMHATLLPKPRAGTHGSGLHVRMRVRPAPGSGWSRAAVTRHWLAGLLHHARPLCAVTNPLVNSYKRLVPGFEAPVYVVWGRDTHAPLARLVAGWEAGELEWRAPDPCCHPYLALAVLLRAGADGLERRLEPPPPLEENVFELDPAEIAARGLEPLPGSLGEALDDMRLSGLVRETLGDYLFSRYLEAKRTEWDIYRVQVHQWELDQYLPIF
>NZ_CP048407.1|WP_116901061.1|478290_478902_+|MerR-family-transcriptional-regulator
MSRHRNLPLYSIGAVCHLTGLSERRIRYYEQAGLLRPARTAGNQRRYSQADVDLLLEIKWLLQQGLHLEEIRRRLLERRGRDEVMGPPDVPAARAAAEPWPLAAATPAVHRPPGASSPRWPGSRWPDRPGASGAAAGVTEPPAGLGRIDRLFRGPAPAVPGMGTARSLYPALDPTVLYEVRRWQRRRNPPAPEEAGRDAPAAG
>NZ_CP048407.1|WP_116901062.1|476826_477975_-|AAA-family-ATPase
MATGHGRVRHLFASGNTGHGFQSFFEYIAWPEPRRVFVLKGGPGTGKSAVIRMVVEGLMEKGVGVELFHCPSDPSSLDGVNAPELGLAVVDGTPPHAVEPPLPGLVGRLLSLEATAGRDLLASRQDRIDATGRRVRQRFQLAHRYLGLALEALGLYEDFYEHAGALDLAALDHSAHEIEAAVFEGHRVVRAGRRGRIRRLFASAVTPEGPRHYLDSLLDPLPRRVFIRGNPGTGCATLVARVAEAALRRGLDIEAYHCGLHGRRLDHVLIPELGVAVVHNAYPHTYEPKTGDLVIDTAAFVNVEALERYREEMEVAQAFFGQAFDQGIWYLRRALMAHQELEAIYATPELRAQVEAYAREILAEAGALMEEQARRRERQQLA
>NZ_CP048407.1|WP_116901063.1|474843_476568_-|glyoxalase
MARDTTVPQQQRGEQVEGIHHVTMIAGDPQANADFYGGVLGMRLVKRTVNFDDPGTYHFYFGDETGRPGTLLTFFPVPGAGRGRHGAGQATLVYLSVPEGTLDYWQGRLEGFGVACHRRPGPLGRQALFFQDPDGLPLALVEEPGPGGPGWPGGPVPATAAIGAVAGVRLTVRDIEPTATILRELGYRPAGGRSGREQPGSQGTDGASAPPAPQEPGPASPPQIWVAGPGGTGRWLELAGDARAPRGTLGAGMVHHVAFRTPTDRTQAAWQQHLTRLGLHVTPVQDRQYFRSIYFREPGGVLFEIATDPPGFLIDEDRDALGTGLRLPPWYEPARAALEQALPPLHHPSGFGELGFIHRFARGTEDPDRAPVLLLLHGTGGDEHDLLPLGAHLWPGAALLSPRGQVLEDGMPRFFRRLAPGVLDAADLRRRAGDMARFVTAAARRYGFDPGRVVAVGYSNGANLAAALLLRHPRLLAGAVLFRPMAVPVEAPEAGALAGRPVLVAAGRQDPVVPPEQSLQLARTLEAAGAAVTLHWAGTGHHLERAELDAAARWLAVEARWPWRGSGEGPADTK
>NZ_CP048407.1|WP_116901064.1|473392_474745_-|M20/M25/M40-family-metallo-hydrolase
MGGTRTAATGEPPVPDPWDDLESLCRLPHRGTCTPEEGRAARWLAARLAELGFEVDLQPFTAPRHTLYLGPGLTGLVLAALGLTGARWAGPGAGSGLLALMALVTLVPLLGELALWPGGTPISLAWVVPRGRSQNVVARWPQGTPRAAAARQPGEAGPGPSAAGLPAAGPQEPLGGRQGEPGPLHLVITAHYDTQWGSWLFAPRFLPWLQAFFVAGYAAFAAVPVLLAARAAGMVAAAPLAAAALVSAAVAGFLLLSWATGRPINGANDNGSGVAVALALARRWAARPLPGVELVVALTGAEETGMRGMAALLSHPWFPRQRGSQVAVLNIDNVGAGRLHYLTAEGMLLPVRYDARLVQEARRLAAALPAGRLTPGPRPLLPTDALVPAARRIPAITFLATGPGGRIPHYHWHTDRLEHVDRAHLAEVARVLWTYVAQLAGEPRAGRYPA
>NZ_CP048407.1|WP_116901054.1|489819_490290_+|acyl-CoA-thioesterase
MALARWTLRLRVRYGETDRMGRAYYARYFDWFTDGRTELIRRLGLSYRRLEDEGVFLPVLEAACRYLRPVDYDDELELDVELVRLTPTRMDFVYRLRAAGSAQVVAEGETRHAFIDTRGRPINLRKARPEVWAQLEGLQLEVPVEAGRPGGGDDGR
>NZ_CP048407.1|WP_116901053.1|490763_491621_+|class-II-fructose-1,6-bisphosphate-aldolase
MPLVTGIELLEDARKRDYAVGAFNVNNMEIIQAIIAAAEEERSPVILQASQGAIKYAGIRYIRALVMAAAEEARVPICLHLDHGPSFEQVMECLRYGFTSVMFDGSHLPYEENVRLTAKAVEAAHAVGVSVEGELGKIGGVEEEIRVEDWDVVLTDPEVVPDFVQRTGVDYLAVAIGTKHGFYKGEPKLDFDRLARIHQLMPDLPLVLHGGSGIPEEHIRRAIPLGVRKINIDTELRAAFVGRAREIMAEKPQEIDPRKILGPAREAMKEKVKEKMRLFGSSGKA
>NZ_CP048407.1|WP_116901052.1|491867_492854_+|class-II-fructose-bisphosphatase
MERELTLELVRVTEAAALAAARWMGRGDKEAADGAAVDAMRAVFDTVDIRGTVVIGEGEMDEAPMLYIGEQVGSGQGPEVDVAVDPLEGTNLVAKGLPGAIAVLAVAPRGCLLHAPDMYMEKIAVGPAAAGAIDIERPIEENLEAVARALGKRVQDVTVILLDRPRHADLVARIRRAGARIRMISDGDVSAAIATALEGTGIDLMVGIGGAPEGVLAAAALYCLGGELQGRLWPEDEEDRERMRAMGIDEARVLRIEDLVRGEDVIFAATGITSGEMLRGVQFTSRGVYTHSVAMRYRTGTVRFVEAWHRLERKPVIGPMVSGSGADT
>NZ_CP048407.1|WP_116901051.1|493095_493659_+|GAF-domain-containing-protein
MANVERDEPAAAGRDERVAEEAALEARRARTLAWLREQADRGRGFRDLAQALCTHLYREYPHYSWVGVYMIEDDRLRLWAWDGPQPTQHVEIPLNAGLCGWAASTGQLANVPDVRQDPRYLQCFLSCQSEIVVPIARDGKVYGEIDIDSDRLAAFGVGDERFLQEVCAILAERAAADAEVEAGRTET
>NZ_CP048407.1|WP_147308128.1|493664_494543_-|response-regulator
MRILIADDHPMTRAALRRLLGRLPGWTVVGEAADGYEAIRAVNLLQPDLVLMDLAMPRCDGLLATRWIRRRHPEVRVIILTVHRRPEEFWEAIRSGAQGYLVKGLAPEALLASLQELATDRVPISAQTAHTLLHAVGRDDRPLEASSTTQQNAALRRNATVAMAAEPADPNRGSPATDVTVHAATPSRHGGSWARGALTGREWQVAALVARGLTNREIAQQLVLSEHTVHNHVKRILAKTGARNRADLTRRLAEHLVIRTATEPGPRIAWSERPDAPGWDTHPEPRRTVRFR
>NZ_CP048407.1|WP_116901049.1|494523_495552_-|hypothetical-protein
MGWMNPRHWRWILAGVPAVATALFETVRHSWFEPVPHAHAGNLLGALATGLAASVCSWAVAAKADALYHRLRQVEAEAARRHERDRLVAALHDDVAQRLFWIGVELDELVRALGSVPLREESGRSQMEPVRPTSSGGPMVSGASKGFNGRAKDIVPDLEALRRRLGAVRSEVDAAYGAVRHALHGLHEGTAATGVPSFWDALRRIANELDLDVQVAGQNGRGDGLPTPPPHAASDALAIVAEALRNVAKHADTRQARVEASLRRPGPGSRERFWCLTIADSGRGFDPGRDTGGLGLSLMQERAERVGGHLEVRSRPGRGTQIELRIPANPYRGGLYGANFDR
>NZ_CP048407.1|WP_116901048.1|495742_496750_+|DUF4198-domain-containing-protein
MEKEVGAMGRHPGPRRPAGGARSTRIWLPSRPQLLMTIAAATLVLTTAVPATAHDRWVQPYSPVVTSGQVAYFDIMLGNHSNEHRSYRLAGKPGREGLDVLVIGPDGQRTSLNDTLFDTGEADDTPPAGPKGYLCGSFVPQSEGTYIVAATADAVLQHGDEPPFRSLSLAKTVVMAASSLPATASNVEGYDRPVADDRLEIVPKVNPAALFPGEEVRLQILLKGEPLSGQKVAVIRRSTSEFKEYETDSQGMIRFPAGEPDYYLVRLEYDSPQEKQTGQYEKTTYEATFTYAVQRPAAGKVGGQRAADRVPGWAWLVAGGLLGVAGSAIGGRWRR
>NZ_CP048407.1|WP_158556075.1|496974_497433_+|hypothetical-protein
MASFPKENERLTEAPETLWVRFTEPIETGVSTLRLLDAAGQEVAGTRQSAEGDRGLRLSVPPLAPGDYTLEWKVLAQDGHVTQGTIRFSVAGAGGPEARQPASPAPAPAPPPEIGAAPRSPRGPGASVVAIGAASLGVLVAGVAVGLARRRR
>NZ_CP048407.1|WP_116901126.1|497469_498006_+|type-1-glutamine-amidotransferase
MRAGVVSVAKRIAILVDDMYEDLELWYPYYRLLEAGHQVDLIGSERERAYTSKHHYPAKAVKSIAEVRPEDYDGVVIPGGYAPDKMRRDERMVRFVREIHDQGKLVAAICHAGWMLVSADVLRGRRATSVRAIRDDMRNAGCEWVDEPVVVDGNLVTSRTPDDLPAYMKAILAKLGEG
>NZ_CP048407.1|WP_116901125.1|498465_499482_+|molybdate-ABC-transporter-substrate-binding-protein
MQDSAPGTCRAAGPLPLRHAGRRRWRQGANLGARVLAGLVLVLVAAGLGGCGGGGVPRDGHVGPGAGAAVPASSREEPAGSHASPQGGPPGPPAGPGDGPAGGTEILVAAAASLQEVMEEAAAAFGWVHPGIRVRFHFGSSGALAAQVEAGAPVDLLVAAGRPPVDRLIRAGLAAPGDVRVLAGNRLVLVAPAGPGPAGPGTPVRSWADLAGDQVRRVALGDPAHVPAGQYGRQVLEHLGLWPAVASRLVLDQDVRQVLHHVAAGAADAGIVYATDAATAPGVRVVAEAPPGSHDPIVYPLVIPRSAPQPQAARVFADFLLGPEVRAILDEHGFAPPP

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Crispr_ID: NZ_CP048407_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_2

797802-797903

Orphan

Consensus_repeat	Method
GTGACAACGAACAAACCGGTCAGGCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048407_2

>merge|NZ_CP048407|2|797802-797903|CRISPRCasFinder
GTGACAACGAACAAACCGGTCAGGCCGTCGTACAACCGCTTTGCCGCGGCCGCTATCGCGGCCGCCCGGGCCGCGTGATAACGAACAAACCGGTCAGGCCGT

>NZ_CP048407|2|2|797802-797903|CRISPRCasFinder
GTGACAACGAACAAACCGGTCAGGCCGT	CGTACAACCGCTTTGCCGCGGCCGCTATCGCGGCCGCCCGGGCCGC
GTGATAACGAACAAACCGGTCAGGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116900832.1\|798016_798433_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP048407.1\|WP_158556057.1\|799560_799938_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225293
NZ_CP048407.1\|WP_116900824.1\|806742_807729_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP048407.1\|WP_116900830.1\|798702_799101_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP048407.1\|WP_116900837.1\|792476_793607_+\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223906
NZ_CP048407.1\|WP_116900826.1\|803798_805550_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173879
NZ_CP048407.1\|WP_158556058.1\|799057_799639_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900833.1\|796226_797564_-\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|236025
NZ_CP048407.1\|WP_116900838.1\|790792_791656_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_147308118.1\|786429_787050_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227132
NZ_CP048407.1\|WP_116900842.1\|785793_786252_+\|prepilin-type-cleavage/methylation-domain-containing-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900835.1\|794910_795138_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900825.1\|805770_806730_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP048407.1\|WP_116900834.1\|795156_796170_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132883
NZ_CP048407.1\|WP_116900828.1\|800253_801519_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|366534
NZ_CP048407.1\|WP_116900878.1\|802837_803659_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP048407.1\|WP_116900840.1\|787316_788687_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900839.1\|790149_790809_+\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|273768
NZ_CP048407.1\|WP_116900827.1\|801659_802505_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|188121
NZ_CP048407.1\|WP_116900836.1\|793782_794736_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116900832.1\|798016_798433_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	2.61888e-18
NZ_CP048407.1\|WP_158556057.1\|799560_799938_+\|DUF86-domain-containing-protein	gnl\|CDD\|225293	COG2445, COG2445, Uncharacterized conserved protein [Function unknown].	3.63876e-09
NZ_CP048407.1\|WP_116900824.1\|806742_807729_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.22439e-93
NZ_CP048407.1\|WP_116900837.1\|792476_793607_+\|NTP-transferase-domain-containing-protein	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	1.05986e-116
NZ_CP048407.1\|WP_116900825.1\|805770_806730_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.36795e-126
NZ_CP048407.1\|WP_116900833.1\|796226_797564_-\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|236025	PRK07476, eutB, threonine dehydratase; Provisional.	2.88422e-118
NZ_CP048407.1\|WP_147308118.1\|786429_787050_+\|hypothetical-protein	gnl\|CDD\|227132	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion].	6.22551e-06
NZ_CP048407.1\|WP_116900830.1\|798702_799101_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.12672e-43
NZ_CP048407.1\|WP_116900834.1\|795156_796170_+\|LD-carboxypeptidase	gnl\|CDD\|132883	cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	5.35188e-116
NZ_CP048407.1\|WP_116900828.1\|800253_801519_-\|diguanylate-cyclase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	2.20007e-71
NZ_CP048407.1\|WP_116900878.1\|802837_803659_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.04511e-73
NZ_CP048407.1\|WP_116900826.1\|803798_805550_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173879	cd08514, PBP2_AppA_like, The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold. This family represents the substrate-binding domain of the oligopeptide-binding protein, AppA, from Bacillus subtilis and its closest homologs from other bacteria and archaea. Bacillus subtilis has three ABC-type peptide transport systems, a dipeptide-binding protein (DppA) and two oligopeptide-binding proteins (OppA and AppA) with overlapping specificity. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.80645e-164
NZ_CP048407.1\|WP_116900839.1\|790149_790809_+\|fimbrial-assembly-protein	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	0.000389471
NZ_CP048407.1\|WP_116900827.1\|801659_802505_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|188121	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase.	2.99653e-46
NZ_CP048407.1\|WP_116900836.1\|793782_794736_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.63665e-174

>NZ_CP048407.1|WP_116900833.1|796226_797564_-|pyridoxal-phosphate-dependent-enzyme
MSLKNQPPSGVPAGGTNPGAPSPRGPNPEGHNQGDPDPERKHQDLVDDPSWREELLAARTRIAGIAVRTPLIPSPALSERLGAEVYLKLETLQPTGSFKLRGAASKVVRLAASDRPGHGRPAGAPASDPAPLRPVPGVVTFSTGNHGRAVAYVARRLGLRAVVCVSEGVPPVKLEAIRRLGAELAFAPTQDDAEALCARLAAEQGLVPVHPFDDPDVIAGHGTVGLEILDDLPDVDAVIVPLSGGGLLSGVGLALWHFAPGGVARPQGILAPGGRASSRPAAAAGARQSVTAPQLIGVSMERGPVMFHSLRAGRPITLPEEPSLADSLLGGIGLDNRWTFQLVSELATDAVLVSEEAIARAMTFMLEEHGLLVEGGAATAVAALMEAAATPPDSKASDRHVPSDRRVQSLRGVFPWRPEGPLPKPRRIVVVVTGRNVDPRRVVSG
>NZ_CP048407.1|WP_116900834.1|795156_796170_+|LD-carboxypeptidase
MLRKPVRLCPGDTVGVVSLSAPVAAECPRRYRRGLEELKRIGFRPRPAPHVTARHGHTAGTPEQRLGDLHDLWRDPDVTAIINTIGGYNSHHLLEDLDYEYIARHPKLFIGYSDITALHVALHARTGLVTVLGPALMPQFGEYGGVHPYTWEHLRRVTMQAEPPGELTPSPEWTAEHLRWDVEDDRPRRYVPNPGPRTLRPGQAEGPILAGNAGTLLLLAGTPWWPRVDGVILCLEEDESEHPGTIDRMLTQLRHMGVFSRIAGLVLGRFHPRVGFSEDDPLEEIVLRAVRGYDFPVAVDFDFGHTDPMFTLPLGVRARLEAAPTKPRLFILEAAVI
>NZ_CP048407.1|WP_116900835.1|794910_795138_+|hypothetical-protein
MTRIEVTGAVNALWLVGFLLVRYLAEAGPAAVGAPGVSDTAKLFGWAVPMGLVLFGVAWGGYAIGRVAAQSERQN
>NZ_CP048407.1|WP_116900836.1|793782_794736_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MPRTVRKAVIPAAGLGTRFLPATKAQPKEMLPVVDKPIIQYVVEEAVAAGIDDILIVTGRGKRAIEDHFDRSIELEWHLERGNKDEMLEWVRYIADLADVHFVRQKEPLGLGHAVLQARRHVGDEPFAVLLGDEIFIGEEPALAELMARYRETGASVVAVREVPREQVRRYGVVAGEPVGDGLYRVRDMVEKPDPAEAPSNLAIVGRYIIEPDIFDLLERVGRGKNDEIQLTDALRLLARDQAVYAYQTRSRRYDVGEKLGFLQATVEFALMRPELAPDFRDYLFNLVDELRTGRWPGVEQAAATRQAGPAPLRRPR
>NZ_CP048407.1|WP_116900837.1|792476_793607_+|NTP-transferase-domain-containing-protein
MPGLPRVAVILAGGEGRRLWPASTPRRPKQFLRLFGGRTLLEATWERARAVPGVVDVWVVTGAPYVELTRHALPELPTGHLVIEPSAKNTAPALALAAGLIARRYGDAAVLVLPADHYVSGVGAFTEAADRALAAAAACDGLVTFGIEPTRPETQYGYVELDEPALAPGAGPFRVRRFVEKPGPEQAAAFLASGRYLWNSGMFAWQNAIFLSELERVVPELARLAARVAAGEPREAWATVWEALPSISVDYAVLERARRILCIRAGFAWDDLGSWLAVDRHGIRDEHGNVVLGTAPAVVQGSSGVTVLTEELPAVVMGVRDLVLAATRDGVLVAGKDSIEGLRQALGILERKLQELARGGVGMQAPAPAAAGREPR
>NZ_CP048407.1|WP_116900838.1|790792_791656_+|hypothetical-protein
MTVGFEGPAWLEAAQGPVAAGPGPGGPPGQGPRRRGRGSGGSAPLWVGLRSGLVAHRSPWIRLAPWLLLVAVAFGLAFAPLMLAPEVERWLVLRARVGEAWQAAVEAQGAAAGLRQVASQLPGLREQVQQAEEGLVSVEDLPGVVTRLQTQAAAAGVRLSSVVFGPYQPVRSPAGQDGESPGAAGGNSGQPAGTASGDSATPQPGSSSPPADAAYGTVTVEVVAQGDWLQLADFAGEIARQEAIRIQGWSAARGSEGVPYDLRLVGELVVKGQPPVAVAVQGEEPAQ
>NZ_CP048407.1|WP_116900839.1|790149_790809_+|fimbrial-assembly-protein
MNRVRWPSEGRRSRRQRGGLVVPAFNLLQPALPARRARVVAIAVALLVLVSLVDLAMVLAWTGITLHNDGTERQILALQDDEARWRAEAARYAPSIQERAELTARLEILQSLPPGYVASDALLRHLSATLPPGSSLTSANLAEEGRVVLSGVAPSYQAVEQYARSLQRGGFFAYVRVATAAETGSEAVAGEAGSSLGSGPVSFQFEGWLKEMFGHDGGV
>NZ_CP048407.1|WP_116900840.1|787316_788687_+|hypothetical-protein
MGPSRVATATRGDPAARWGDPGQALLIALVALALVGVLAAVLSTLWARASTLAVRRAEAQTAFYAAEAGLAEGLQRVLAGDAAFLAGEAAMGQTGNGTYRVRLIAAGSTGGTGYTIESTGWAQARPASRRTVRMTVDSAFFRPVVAGDDLILDRDCLLCDPRLPIAFSPEALYADTLQGGDKAWGARQGSVPWPRLTYGALAAQVPNPTQVTRLTSRTCQLATSGWYEVQKHACQRLDVTAPWAGVTGDLDADHITVKPGAMLVVAGAVEVNTLAWVNAGAVTGGGIVVAGKEIAVDTVDLAQWGLQEAAILLALDTNTPDCPSSVPGCTYDPKRPDAARDPSNDITLRAFSLVNLSSARTLVAYAAPLRVPGPSGQPKLTVDLSSLVSFGLVTFRGTLVSGGDVELRDQGLVALSRWEVTADPAAARPLFELAGTLPGVGVLAQLEWAEQRGGGP
>NZ_CP048407.1|WP_147308118.1|786429_787050_+|hypothetical-protein
MRRRGEGGYVLVEGMVALVIGGLVAASAAALLAWTAAVQARASVATEQLTSLHQAADAVAALLRQAGAAGRPALAQGTNEAVTLCGVRDGMQVWRGVIRVGAQGRLVVEPIAAPRPATSSCPGTDLTSPRVLAPAVRVTALTWGYYTGTGGSPVTGCGGNGQPRCSEVRAVTFALTGTPPMTPGYGRAGAPVAVGRVVTLRNPGLP
>NZ_CP048407.1|WP_116900842.1|785793_786252_+|prepilin-type-cleavage/methylation-domain-containing-protein
MALWTRAAAKNANNKRMRGSGLIEALVALFVFALVAGAFLGAMTGFLRGTARASQLQGAVSCAGHVVESVRAGLLTPGAQPQDGSCAAAGWPTLGYRLESVAGGGPAGGGAGSPAGTWPALSVTVFPAGRQGQPAAALYRVVTAASLATSGP
>NZ_CP048407.1|WP_116900832.1|798016_798433_+|nucleotidyltransferase-domain-containing-protein
MAQPQHLEDLIRRLRAVLIQEEDVRSAWLFGSVARGQDRTDSDVDVAVWMRARPDFERFSALQLRLEQAVHRPVDLVVLNDGNPLVAQEAVRGIPLLTRDAYAELEFVLDVDRQAEDFRLFLDSFWKERRRAAKEARR
>NZ_CP048407.1|WP_116900830.1|798702_799101_+|IS200/IS605-family-transposase
MRRRFKSDRSVVYSCQYHVVWCPKYRRRVLVDGVDDHLKAILREVARERQAEMIEMKVMPDHVHLLVQVDRQFGIHRLVRLMEGRSSRILRQESPWLRSQLPTRWTNSYVVATVGGAPLAVNKQYIEQQKRV
>NZ_CP048407.1|WP_158556058.1|799057_799639_+|hypothetical-protein
MQLTSNILNNRNGFERTPSFFCEIPLCVTPAQARRLNVRLKAARQVYNACLGEAFKRARLLKERRVYRKACQLPRGEARTAAFGTARQSVAFTDAALQRYAVRLRQRAFQAHLDVHVAQKLASRAFKAVDAWLLGQRGRPRFKGRRQMDAVEGKSNHAGIRWRGGAVEWKGLVLPAIMDLRDPVVAHALGSSP
>NZ_CP048407.1|WP_158556057.1|799560_799938_+|DUF86-domain-containing-protein
MERPCPSRHHGSARSRRGPCPRFFPLEPPGFSRGEVQISKILLSSLGRPTPGTYREIMLALAAAELASEDLAQDLATLAGLRNTLAHRYLDYKWEGVRWFLTKGIESVNRWLNRCEELAAHQRDR
>NZ_CP048407.1|WP_116900828.1|800253_801519_-|diguanylate-cyclase
MPVSNSMPEPAAGAAAAGSTAKRKKYDGYRSFQFLEPGVDYRPFQLAREIGRVSPYVVEVSDAQEQRVQRLLAENVVISLHEHLMVIPEDVGQVFDYIREGRIFTGYEGLAASGLDAVCENFLNGAATITSKMGWKWTDIIHDIGMRFADLAHQDFVIRAERVDDILRAHAEGRVALIPSLEAATPIENELDRLDVLYGLGIRMMGIAYSEGNALGCGLREPRDGGLTVFGRQAVERMNKLGIAIDVSHSGDQTALDTIRFSKKPVFITHAGARALWPSRRLKPDEVIKACAERGGVIGIEAAPHTTLTRNHPEHSIESVMEHFEYCVELVGIDHVTFGPDLLFGDHVALHKAFAAHLSIGASHAKGEDFPRVPYVRGLENIAEAWPNIVRWLVKHHYSDDEIKKVIGGNTLRVLREVWHG
>NZ_CP048407.1|WP_116900827.1|801659_802505_-|alpha/beta-fold-hydrolase
MRARINGVELVYEVFGEGIPLLTLHGGPGLGSRAGDREAFMPFTELGLQLVCFDQRGSGESEGAPPYSHEQWVADIEGLRQHLGLGKMVLAGGSYGGHLALEYALRYPENLYALILRDTAASNRYQEKAVQAALARNLPGVDRAMLARLFAGQVYDDEDFRACYEAIMPLYEVNFDPERARAKLERIRFRHETHNWAFSRNQPRYDLTNRLHEIQVPTLVLCGRHDWITPLEASEEIARLMPRARLVVFDHSGHSPQVEEPEKFRRVVREFLLEVVPGLKG
>NZ_CP048407.1|WP_116900878.1|802837_803659_+|IclR-family-transcriptional-regulator
MPQSPAGPGHGYVIQAVIKALDVLFAFREPPHEHSLAELARITGLGKNQCFRCLKTLEAYGLVRLGEHGRYVLTPMLLSLAVLAAEERSLIRLAQPILDRLAAETGETVHLIALVDGMAVVIDRRDGPAGLRLATPLGARSPLHAGAVPKAMLAFLPEAEQARVLDMLPFLPRYTPKTVVDPQQLRAELAEIRRRGYAISDEDIEAGARGVGAPIFDARGRVVAGVSAGGPSLRIPPERLEHLGELVRLAARDISRQLGYAGAVSAAGPGARS
>NZ_CP048407.1|WP_116900826.1|803798_805550_+|ABC-transporter-substrate-binding-protein
MAVRWDEAGGRPAGSTAGRGSGGAAGPYRSRRRSLARIAAALLVAAATLLAACGSGGGGGAGGTGSGGAGGSVGSGGGGGGEAYNPNATVTLVTPADPTFNPWHPNAYAESNIINEMIFPGLTRWDEHMKPVPHLATEWSVSDDGLVWTFKLREGVKWSDGQPFTADDVAFTFNEIVLNPDLGANHSSEYKAVEKVVAVDPHTVEFHLKEPFASLPSYLAYYAGILPKHVFEGVEDPWSLNEFNKKNPVGTGPFMVAEYVSGSHVRLVPNPHYWGEKPKVKDVVFRIVPDVNAQVAQLLAGEVDMLSIDDPTLLDKLQNNPNLQLERVLTNVYYFVALNQDDPRFQDKRVRQALSYAIDKEAMIENLVKGYGQVATGPIPPLQAEYYNGDVARYPYDPEKAKALLAEAGWKPGPDGILQKDGKPFHITMTAAQMRQLVPATLLVQQWWKDLGIQVDVDVLDWNSYIEKAIVNRDYEATLAWWSTPADPDVYPYYASEAAGRGNNIPNYRNPALDDLLRRGRAATSEEERKAIYAEAQKLMADELPYLYLWWPESIVVYNKALHVPPGSYAVKGLYVDEWYKTR
>NZ_CP048407.1|WP_116900825.1|805770_806730_+|ABC-transporter-permease
MASLRYAGRRLLQGLVVLWVITVVTFLLVNLAPGGPGAVMRMETTAEQREALMRQLGLDQPLPVRYVRWLGDALQGDFGQSMNSREPVMPLVLERLGNTAVLAAATLALSLAVGLALGVAAALRRGSWIDHAATLISTFGVSVPDFWFGILLIMALSVRWNLLPSGGMATVGAEFSLADRLVHLIMPSFVLMLVILPNILRFVRSSLLEVLHQDFIRTARAKGAGPARVILAHALRNAMIPVLTMLGLLIPALLGGSVIAESVFAWPGMGRLAVEAAMGRDYPVIMAVTVVAGVVVVITNLVVDLAYSLVDPRIRHAAG
>NZ_CP048407.1|WP_116900824.1|806742_807729_+|ABC-transporter-permease
MTVSVPEPGPARRATPRAGAGPAGSPPPGGAAAGGLAPGEPGARAAAEALQPDAEGFVARVRRRPALLAAAAVLLLLYILVWALPPLLGLDPDATDPAASLAPPGPGHWLGTDELGRDMLARMLAGGRITLTVAALAAAIALGVGTLVGALAGFYRGWVETVLMRFVDAMMAIPSYFLIVAELAVFGDSPAVVVAVIGLNYWMPVARLVYAEFLKWREREFIEAEVALGASPARIIWRHLFPQVIPSLLALLSLTVGWAVLAESGLSYLGLGIQPPDASWGNMLKNAQVYMWTQPMLAVYPGAAILLTVLCFNVLGNGLRDVLDPRDA

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Crispr_ID: NZ_CP048407_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_3

799978-800073

Orphan

Consensus_repeat	Method
CCGCCCCCTTGCTGCGATCCTGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048407_3

>merge|NZ_CP048407|3|799978-800073|CRISPRCasFinder
CCGCCCCCTTGCTGCGATCCTGACGCCCCGGGGCATGCCGGCCCCGATACGTCGGGTGGCCCGAACCTTCGGCCGCCCCCCTGCTGCGATCCTGAC

>NZ_CP048407|3|3|799978-800073|CRISPRCasFinder
CCGCCCCCTTGCTGCGATCCTGAC	GCCCCGGGGCATGCCGGCCCCGATACGTCGGGTGGCCCGAACCTTCGG
CCGCCCCCCTGCTGCGATCCTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116900832.1\|798016_798433_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP048407.1\|WP_158556057.1\|799560_799938_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225293
NZ_CP048407.1\|WP_116900824.1\|806742_807729_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP048407.1\|WP_158556064.1\|809441_810395_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236898
NZ_CP048407.1\|WP_116900837.1\|792476_793607_+\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223906
NZ_CP048407.1\|WP_158556058.1\|799057_799639_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900833.1\|796226_797564_-\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|236025
NZ_CP048407.1\|WP_116900838.1\|790792_791656_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900830.1\|798702_799101_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP048407.1\|WP_116900835.1\|794910_795138_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900825.1\|805770_806730_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP048407.1\|WP_116900877.1\|810759_812391_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP048407.1\|WP_116900834.1\|795156_796170_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132883
NZ_CP048407.1\|WP_116900828.1\|800253_801519_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|366534
NZ_CP048407.1\|WP_116900878.1\|802837_803659_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP048407.1\|WP_116900826.1\|803798_805550_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173879
NZ_CP048407.1\|WP_116900822.1\|812834_813692_+\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP048407.1\|WP_116900827.1\|801659_802505_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|188121
NZ_CP048407.1\|WP_116900836.1\|793782_794736_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP048407.1\|WP_116900821.1\|813691_814735_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|181618

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116900832.1\|798016_798433_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	2.61888e-18
NZ_CP048407.1\|WP_158556057.1\|799560_799938_+\|DUF86-domain-containing-protein	gnl\|CDD\|225293	COG2445, COG2445, Uncharacterized conserved protein [Function unknown].	3.63876e-09
NZ_CP048407.1\|WP_116900824.1\|806742_807729_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.22439e-93
NZ_CP048407.1\|WP_158556064.1\|809441_810395_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	1.87886e-151
NZ_CP048407.1\|WP_116900837.1\|792476_793607_+\|NTP-transferase-domain-containing-protein	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	1.05986e-116
NZ_CP048407.1\|WP_116900825.1\|805770_806730_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.36795e-126
NZ_CP048407.1\|WP_116900833.1\|796226_797564_-\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|236025	PRK07476, eutB, threonine dehydratase; Provisional.	2.88422e-118
NZ_CP048407.1\|WP_116900830.1\|798702_799101_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.12672e-43
NZ_CP048407.1\|WP_116900877.1\|810759_812391_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.32864e-115
NZ_CP048407.1\|WP_116900834.1\|795156_796170_+\|LD-carboxypeptidase	gnl\|CDD\|132883	cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	5.35188e-116
NZ_CP048407.1\|WP_116900828.1\|800253_801519_-\|diguanylate-cyclase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	2.20007e-71
NZ_CP048407.1\|WP_116900878.1\|802837_803659_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.04511e-73
NZ_CP048407.1\|WP_116900826.1\|803798_805550_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173879	cd08514, PBP2_AppA_like, The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold. This family represents the substrate-binding domain of the oligopeptide-binding protein, AppA, from Bacillus subtilis and its closest homologs from other bacteria and archaea. Bacillus subtilis has three ABC-type peptide transport systems, a dipeptide-binding protein (DppA) and two oligopeptide-binding proteins (OppA and AppA) with overlapping specificity. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.80645e-164
NZ_CP048407.1\|WP_116900822.1\|812834_813692_+\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	5.57132e-84
NZ_CP048407.1\|WP_116900827.1\|801659_802505_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|188121	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase.	2.99653e-46
NZ_CP048407.1\|WP_116900836.1\|793782_794736_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.63665e-174
NZ_CP048407.1\|WP_116900821.1\|813691_814735_+\|OmpA-family-protein	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	5.04642e-68

>NZ_CP048407.1|WP_158556057.1|799560_799938_+|DUF86-domain-containing-protein
MERPCPSRHHGSARSRRGPCPRFFPLEPPGFSRGEVQISKILLSSLGRPTPGTYREIMLALAAAELASEDLAQDLATLAGLRNTLAHRYLDYKWEGVRWFLTKGIESVNRWLNRCEELAAHQRDR
>NZ_CP048407.1|WP_158556058.1|799057_799639_+|hypothetical-protein
MQLTSNILNNRNGFERTPSFFCEIPLCVTPAQARRLNVRLKAARQVYNACLGEAFKRARLLKERRVYRKACQLPRGEARTAAFGTARQSVAFTDAALQRYAVRLRQRAFQAHLDVHVAQKLASRAFKAVDAWLLGQRGRPRFKGRRQMDAVEGKSNHAGIRWRGGAVEWKGLVLPAIMDLRDPVVAHALGSSP
>NZ_CP048407.1|WP_116900830.1|798702_799101_+|IS200/IS605-family-transposase
MRRRFKSDRSVVYSCQYHVVWCPKYRRRVLVDGVDDHLKAILREVARERQAEMIEMKVMPDHVHLLVQVDRQFGIHRLVRLMEGRSSRILRQESPWLRSQLPTRWTNSYVVATVGGAPLAVNKQYIEQQKRV
>NZ_CP048407.1|WP_116900832.1|798016_798433_+|nucleotidyltransferase-domain-containing-protein
MAQPQHLEDLIRRLRAVLIQEEDVRSAWLFGSVARGQDRTDSDVDVAVWMRARPDFERFSALQLRLEQAVHRPVDLVVLNDGNPLVAQEAVRGIPLLTRDAYAELEFVLDVDRQAEDFRLFLDSFWKERRRAAKEARR
>NZ_CP048407.1|WP_116900833.1|796226_797564_-|pyridoxal-phosphate-dependent-enzyme
MSLKNQPPSGVPAGGTNPGAPSPRGPNPEGHNQGDPDPERKHQDLVDDPSWREELLAARTRIAGIAVRTPLIPSPALSERLGAEVYLKLETLQPTGSFKLRGAASKVVRLAASDRPGHGRPAGAPASDPAPLRPVPGVVTFSTGNHGRAVAYVARRLGLRAVVCVSEGVPPVKLEAIRRLGAELAFAPTQDDAEALCARLAAEQGLVPVHPFDDPDVIAGHGTVGLEILDDLPDVDAVIVPLSGGGLLSGVGLALWHFAPGGVARPQGILAPGGRASSRPAAAAGARQSVTAPQLIGVSMERGPVMFHSLRAGRPITLPEEPSLADSLLGGIGLDNRWTFQLVSELATDAVLVSEEAIARAMTFMLEEHGLLVEGGAATAVAALMEAAATPPDSKASDRHVPSDRRVQSLRGVFPWRPEGPLPKPRRIVVVVTGRNVDPRRVVSG
>NZ_CP048407.1|WP_116900834.1|795156_796170_+|LD-carboxypeptidase
MLRKPVRLCPGDTVGVVSLSAPVAAECPRRYRRGLEELKRIGFRPRPAPHVTARHGHTAGTPEQRLGDLHDLWRDPDVTAIINTIGGYNSHHLLEDLDYEYIARHPKLFIGYSDITALHVALHARTGLVTVLGPALMPQFGEYGGVHPYTWEHLRRVTMQAEPPGELTPSPEWTAEHLRWDVEDDRPRRYVPNPGPRTLRPGQAEGPILAGNAGTLLLLAGTPWWPRVDGVILCLEEDESEHPGTIDRMLTQLRHMGVFSRIAGLVLGRFHPRVGFSEDDPLEEIVLRAVRGYDFPVAVDFDFGHTDPMFTLPLGVRARLEAAPTKPRLFILEAAVI
>NZ_CP048407.1|WP_116900835.1|794910_795138_+|hypothetical-protein
MTRIEVTGAVNALWLVGFLLVRYLAEAGPAAVGAPGVSDTAKLFGWAVPMGLVLFGVAWGGYAIGRVAAQSERQN
>NZ_CP048407.1|WP_116900836.1|793782_794736_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MPRTVRKAVIPAAGLGTRFLPATKAQPKEMLPVVDKPIIQYVVEEAVAAGIDDILIVTGRGKRAIEDHFDRSIELEWHLERGNKDEMLEWVRYIADLADVHFVRQKEPLGLGHAVLQARRHVGDEPFAVLLGDEIFIGEEPALAELMARYRETGASVVAVREVPREQVRRYGVVAGEPVGDGLYRVRDMVEKPDPAEAPSNLAIVGRYIIEPDIFDLLERVGRGKNDEIQLTDALRLLARDQAVYAYQTRSRRYDVGEKLGFLQATVEFALMRPELAPDFRDYLFNLVDELRTGRWPGVEQAAATRQAGPAPLRRPR
>NZ_CP048407.1|WP_116900837.1|792476_793607_+|NTP-transferase-domain-containing-protein
MPGLPRVAVILAGGEGRRLWPASTPRRPKQFLRLFGGRTLLEATWERARAVPGVVDVWVVTGAPYVELTRHALPELPTGHLVIEPSAKNTAPALALAAGLIARRYGDAAVLVLPADHYVSGVGAFTEAADRALAAAAACDGLVTFGIEPTRPETQYGYVELDEPALAPGAGPFRVRRFVEKPGPEQAAAFLASGRYLWNSGMFAWQNAIFLSELERVVPELARLAARVAAGEPREAWATVWEALPSISVDYAVLERARRILCIRAGFAWDDLGSWLAVDRHGIRDEHGNVVLGTAPAVVQGSSGVTVLTEELPAVVMGVRDLVLAATRDGVLVAGKDSIEGLRQALGILERKLQELARGGVGMQAPAPAAAGREPR
>NZ_CP048407.1|WP_116900838.1|790792_791656_+|hypothetical-protein
MTVGFEGPAWLEAAQGPVAAGPGPGGPPGQGPRRRGRGSGGSAPLWVGLRSGLVAHRSPWIRLAPWLLLVAVAFGLAFAPLMLAPEVERWLVLRARVGEAWQAAVEAQGAAAGLRQVASQLPGLREQVQQAEEGLVSVEDLPGVVTRLQTQAAAAGVRLSSVVFGPYQPVRSPAGQDGESPGAAGGNSGQPAGTASGDSATPQPGSSSPPADAAYGTVTVEVVAQGDWLQLADFAGEIARQEAIRIQGWSAARGSEGVPYDLRLVGELVVKGQPPVAVAVQGEEPAQ
>NZ_CP048407.1|WP_116900828.1|800253_801519_-|diguanylate-cyclase
MPVSNSMPEPAAGAAAAGSTAKRKKYDGYRSFQFLEPGVDYRPFQLAREIGRVSPYVVEVSDAQEQRVQRLLAENVVISLHEHLMVIPEDVGQVFDYIREGRIFTGYEGLAASGLDAVCENFLNGAATITSKMGWKWTDIIHDIGMRFADLAHQDFVIRAERVDDILRAHAEGRVALIPSLEAATPIENELDRLDVLYGLGIRMMGIAYSEGNALGCGLREPRDGGLTVFGRQAVERMNKLGIAIDVSHSGDQTALDTIRFSKKPVFITHAGARALWPSRRLKPDEVIKACAERGGVIGIEAAPHTTLTRNHPEHSIESVMEHFEYCVELVGIDHVTFGPDLLFGDHVALHKAFAAHLSIGASHAKGEDFPRVPYVRGLENIAEAWPNIVRWLVKHHYSDDEIKKVIGGNTLRVLREVWHG
>NZ_CP048407.1|WP_116900827.1|801659_802505_-|alpha/beta-fold-hydrolase
MRARINGVELVYEVFGEGIPLLTLHGGPGLGSRAGDREAFMPFTELGLQLVCFDQRGSGESEGAPPYSHEQWVADIEGLRQHLGLGKMVLAGGSYGGHLALEYALRYPENLYALILRDTAASNRYQEKAVQAALARNLPGVDRAMLARLFAGQVYDDEDFRACYEAIMPLYEVNFDPERARAKLERIRFRHETHNWAFSRNQPRYDLTNRLHEIQVPTLVLCGRHDWITPLEASEEIARLMPRARLVVFDHSGHSPQVEEPEKFRRVVREFLLEVVPGLKG
>NZ_CP048407.1|WP_116900878.1|802837_803659_+|IclR-family-transcriptional-regulator
MPQSPAGPGHGYVIQAVIKALDVLFAFREPPHEHSLAELARITGLGKNQCFRCLKTLEAYGLVRLGEHGRYVLTPMLLSLAVLAAEERSLIRLAQPILDRLAAETGETVHLIALVDGMAVVIDRRDGPAGLRLATPLGARSPLHAGAVPKAMLAFLPEAEQARVLDMLPFLPRYTPKTVVDPQQLRAELAEIRRRGYAISDEDIEAGARGVGAPIFDARGRVVAGVSAGGPSLRIPPERLEHLGELVRLAARDISRQLGYAGAVSAAGPGARS
>NZ_CP048407.1|WP_116900826.1|803798_805550_+|ABC-transporter-substrate-binding-protein
MAVRWDEAGGRPAGSTAGRGSGGAAGPYRSRRRSLARIAAALLVAAATLLAACGSGGGGGAGGTGSGGAGGSVGSGGGGGGEAYNPNATVTLVTPADPTFNPWHPNAYAESNIINEMIFPGLTRWDEHMKPVPHLATEWSVSDDGLVWTFKLREGVKWSDGQPFTADDVAFTFNEIVLNPDLGANHSSEYKAVEKVVAVDPHTVEFHLKEPFASLPSYLAYYAGILPKHVFEGVEDPWSLNEFNKKNPVGTGPFMVAEYVSGSHVRLVPNPHYWGEKPKVKDVVFRIVPDVNAQVAQLLAGEVDMLSIDDPTLLDKLQNNPNLQLERVLTNVYYFVALNQDDPRFQDKRVRQALSYAIDKEAMIENLVKGYGQVATGPIPPLQAEYYNGDVARYPYDPEKAKALLAEAGWKPGPDGILQKDGKPFHITMTAAQMRQLVPATLLVQQWWKDLGIQVDVDVLDWNSYIEKAIVNRDYEATLAWWSTPADPDVYPYYASEAAGRGNNIPNYRNPALDDLLRRGRAATSEEERKAIYAEAQKLMADELPYLYLWWPESIVVYNKALHVPPGSYAVKGLYVDEWYKTR
>NZ_CP048407.1|WP_116900825.1|805770_806730_+|ABC-transporter-permease
MASLRYAGRRLLQGLVVLWVITVVTFLLVNLAPGGPGAVMRMETTAEQREALMRQLGLDQPLPVRYVRWLGDALQGDFGQSMNSREPVMPLVLERLGNTAVLAAATLALSLAVGLALGVAAALRRGSWIDHAATLISTFGVSVPDFWFGILLIMALSVRWNLLPSGGMATVGAEFSLADRLVHLIMPSFVLMLVILPNILRFVRSSLLEVLHQDFIRTARAKGAGPARVILAHALRNAMIPVLTMLGLLIPALLGGSVIAESVFAWPGMGRLAVEAAMGRDYPVIMAVTVVAGVVVVITNLVVDLAYSLVDPRIRHAAG
>NZ_CP048407.1|WP_116900824.1|806742_807729_+|ABC-transporter-permease
MTVSVPEPGPARRATPRAGAGPAGSPPPGGAAAGGLAPGEPGARAAAEALQPDAEGFVARVRRRPALLAAAAVLLLLYILVWALPPLLGLDPDATDPAASLAPPGPGHWLGTDELGRDMLARMLAGGRITLTVAALAAAIALGVGTLVGALAGFYRGWVETVLMRFVDAMMAIPSYFLIVAELAVFGDSPAVVVAVIGLNYWMPVARLVYAEFLKWREREFIEAEVALGASPARIIWRHLFPQVIPSLLALLSLTVGWAVLAESGLSYLGLGIQPPDASWGNMLKNAQVYMWTQPMLAVYPGAAILLTVLCFNVLGNGLRDVLDPRDA
>NZ_CP048407.1|WP_158556064.1|809441_810395_+|dipeptide-ABC-transporter-ATP-binding-protein
MVRAVNLRKEFPLTGGLPGRRLTVRAVDGVSFAIRRGEVFSLVGESGCGKSTTGRLVLRLQEPTEGEVWFAGENLARLPAPRLRRLRRRMQIVFQDPFASLNPRMTVGELIGEPLLIHGLGSKADRQRRVGELLELVGLSPQHATRYPHHFSGGQRQRIGIARALASEPEFLVCDEAVSALDVSVRVQILNLLMELQQRLGLTYLFISHDLGVVRHISDRVGVMYLGKLVEVAPAAELFRRPLHPYTRALLAAIPRPHPLAPARERIELRGELPSPVNPPRGCRFHTRCPLATERCRAEEPALVEHAPGHWAACHYA
>NZ_CP048407.1|WP_116900877.1|810759_812391_-|murein-biosynthesis-integral-membrane-protein-MurJ
MAAQGVAAATLIIALLTAGSRVLGFLREAIYASVFGASPELDAFLVAQGVPNLVLGLVSTAIATAATPVLAGYVTSGRRDQAGRTFSGLATVVLLVVVPGLALLGLLAEPLVRVMAPGFGPEQVHLAAGLTRILLIASLFVTAMNLLTGLLHAHRRFTGPAFTGIPFNLAMIAAALLFGARYGSWALAVGFTVGSLLRVLVQLPEARGIGFRHRWTVDLGDPGLRAIAALLPPLFLSAAVSEVNVFVDRMVGSTLGEGIISALNYAFRVVTLPHGLLAMALVQALYPSLGAVAGSADAPAFRRLLQQGMGVLMVVLAPMTVALLVLRDPIVAFVYGRGSFDGRDATLTALALGAYGLGLVPMALRDLANRALYARRDSRTPALVAVAAMAVNVAGDVVLGRWLGITGLALATTLSFSVGLVLLLGHLYRRQRVLDLGDLVARTGRVAVAAVLAGVVMDAAYRALLARWHVPVAALGAGTAGAAVELALVALPGLAGCAAYLAVLVLLRAPEIGELLGAGLRLLARARGWMPNRLTTQETPGRR
>NZ_CP048407.1|WP_116900822.1|812834_813692_+|flagellar-motor-protein
MDLGSIIGLIAGVASVLIANVMEGGHLDQLLNPSASLLVFGGTLGATLASSGLQNVLLVPGAIAYALRAPKLQPGALIEKLVSLAQQARREGLLSLEDERKNLDDPFFAKGLQFVIDGADPEMVEEVMENAIQAEQRHYLVAAGVLETAGGYAPTMGIIGTVLGLIHVLGNLQDTASLGPAIAVAFMATFYGIASANLLWLPLANKIKANVQAETELRRMVVEGILSIQSGDNPMIVREKLEAFLAAGAGGGKAAKAGSGVAAGDRAGASGARGEAGTRTAGVGD
>NZ_CP048407.1|WP_116900821.1|813691_814735_+|OmpA-family-protein
MDVQFRSGSFGPGARGFPSGSGPGSGPGGGTGLAAGREREGRAGTRHGTGRARRNAVTGGHGAGHGGGGGGHDGAGSMRWLLTYADLITLLLAFFVVMYAMSEVNVARYQALAASLRAAFATAGETVIDTQGWSPDARKVLDGLNQDTGQPNPPGLPGAGGTPPSIPELPAGTSLPPMSAEEREQLEGLVGRVNEALRDAGLGGRASARLTERGVAIIFDDQVFFDLGRAELRPEGQDLLRRLAPILAQVPGTILVEGHTDNLPIRSGRYPSNWELSTARATTVVRYLAERAGLDPRRLAAAGYGEWRPRFPNTSEANRARNRRVEIVLLRPSLDPTARIGGEDGAP

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Crispr_ID: NZ_CP048407_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_4

1855945-1856247

TypeI-B

Consensus_repeat	Method
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	PILER-CR
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	CRISPRCasFinder
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	CRT

4 spacers

cas3HD,cas5,cas7b,cas8b1,cas6,WYL

The CRISPR arrays of NZ_CP048407_4

>merge|NZ_CP048407|4|1855945-1856247|PILER-CR,CRISPRCasFinder,CRT
GTTTGTAGGGTACCTATGACTCGGGTTTGACATCGCGGCGCCACCCGCCAGGGAGAGGGGCGCTGTGTTTGTAGGGTACCTATGACTCGGGTTTGACCGGCCGCATCCGCTGGCAAAGCGGATCAAGGTCAGCAACAAGTTTGTAGGGTACCTATGACTCGGGTTTGACTTGTGCACGCCCGCGACGATGTGCTCGCCCTCGTGGGTTTGTAGGGTACCTATGACTCGGGTTTGACGCGACCTGAACGACGGATGGCAGCGGGGCCTCCGATGTTTGTAGGGTACCTATGACTCGGGTTTGAC

>NZ_CP048407|4|1|1855945-1856247|PILER-CR
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	ATCGCGGCGCCACCCGCCAGGGAGAGGGGCGCTGT
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	CGGCCGCATCCGCTGGCAAAGCGGATCAAGGTCAGCAACAA
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	TTGTGCACGCCCGCGACGATGTGCTCGCCCTCGTGG
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	GCGACCTGAACGACGGATGGCAGCGGGGCCTCCGAT
GTTTGTAGGGTACCTATGACTCGGGTTTGAC

>NZ_CP048407|4|4|1855945-1856247|CRISPRCasFinder
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	ATCGCGGCGCCACCCGCCAGGGAGAGGGGCGCTGT
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	CGGCCGCATCCGCTGGCAAAGCGGATCAAGGTCAGCAACAA
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	TTGTGCACGCCCGCGACGATGTGCTCGCCCTCGTGG
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	GCGACCTGAACGACGGATGGCAGCGGGGCCTCCGAT
GTTTGTAGGGTACCTATGACTCGGGTTTGAC

>NZ_CP048407|4|1|1855945-1856247|CRT
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	ATCGCGGCGCCACCCGCCAGGGAGAGGGGCGCTGT
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	CGGCCGCATCCGCTGGCAAAGCGGATCAAGGTCAGCAACAA
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	TTGTGCACGCCCGCGACGATGTGCTCGCCCTCGTGG
GTTTGTAGGGTACCTATGACTCGGGTTTGAC	GCGACCTGAACGACGGATGGCAGCGGGGCCTCCGAT
GTTTGTAGGGTACCTATGACTCGGGTTTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116900360.1\|1862385_1863255_-\|CRISPR-associated-endonuclease-Cas3''	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|273711
NZ_CP048407.1\|WP_116900371.1\|1847508_1848612_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP048407.1\|WP_116900370.1\|1849376_1850462_+\|glycosidase	unknown	unknown	gnl\|CDD\|350122
NZ_CP048407.1\|WP_116900372.1\|1845920_1847273_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP048407.1\|WP_116900373.1\|1844538_1845792_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP048407.1\|WP_116900369.1\|1850477_1853537_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|226444
NZ_CP048407.1\|WP_135225726.1\|1859960_1860761_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP048407.1\|WP_116900355.1\|1870594_1872232_-\|Sapep-family-Mn(2+)-dependent-dipeptidase	unknown	unknown	gnl\|CDD\|349884
NZ_CP048407.1\|WP_164581349.1\|1858740_1859964_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP048407.1\|WP_116900376.1\|1840574_1841723_-\|pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl\|CDD\|377251
NZ_CP048407.1\|WP_116900357.1\|1867175_1868411_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NZ_CP048407.1\|WP_164581350.1\|1861168_1862364_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP048407.1\|WP_116900367.1\|1863325_1864039_-\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NZ_CP048407.1\|WP_116900358.1\|1865083_1867186_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NZ_CP048407.1\|WP_116900356.1\|1869219_1870218_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP048407.1\|WP_116900374.1\|1843368_1844256_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP048407.1\|WP_116900368.1\|1853568_1855566_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226082
NZ_CP048407.1\|WP_116900379.1\|1848571_1849354_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP048407.1\|WP_116900359.1\|1864062_1865001_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP048407.1\|WP_116900375.1\|1841719_1843066_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|379212

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116900360.1\|1862385_1863255_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|273711	TIGR01596, CRISPR-associated_endonuclease_Cas3-HD, CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.	2.33205e-10
NZ_CP048407.1\|WP_116900371.1\|1847508_1848612_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.24354e-79
NZ_CP048407.1\|WP_116900370.1\|1849376_1850462_+\|glycosidase	gnl\|CDD\|350122	cd18610, GH130_BT3780-like, Glycosyl hydrolase family 130, such as beta-mammosidase BT3780 and BACOVA_03624. This subfamily contains glycosyl hydrolase family 130, as classified by the carbohydrate-active enzymes database (CAZY), and includes Bacteroides enzymes, BT3780 and BACOVA_03624. Members of this family possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. GH130 enzymes have also been shown to target beta-1,2- and beta-1,4-mannosidic linkages where these phosphorylases mediate bond cleavage by a single displacement reaction in which phosphate functions as the catalytic nucleophile. However, some lack the conserved basic residues that bind the phosphate nucleophile, as observed for the Bacteroides enzymes, BT3780 and BACOVA_03624, which are indeed beta-mannosidases that hydrolyze beta-1,2-mannosidic linkages through an inverting mechanism.	3.36935e-163
NZ_CP048407.1\|WP_116900372.1\|1845920_1847273_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.38211e-79
NZ_CP048407.1\|WP_116900373.1\|1844538_1845792_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.53999e-62
NZ_CP048407.1\|WP_116900369.1\|1850477_1853537_+\|beta-galactosidase	gnl\|CDD\|226444	COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and metabolism].	2.18762e-34
NZ_CP048407.1\|WP_135225726.1\|1859960_1860761_+\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.78086e-80
NZ_CP048407.1\|WP_164581349.1\|1858740_1859964_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.00093e-44
NZ_CP048407.1\|WP_116900376.1\|1840574_1841723_-\|pseudouridine-5'-phosphate-glycosidase	gnl\|CDD\|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	1.56684e-160
NZ_CP048407.1\|WP_116900357.1\|1867175_1868411_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.37825e-26
NZ_CP048407.1\|WP_164581350.1\|1861168_1862364_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.05521e-74
NZ_CP048407.1\|WP_116900367.1\|1863325_1864039_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.17007e-21
NZ_CP048407.1\|WP_116900355.1\|1870594_1872232_-\|Sapep-family-Mn(2+)-dependent-dipeptidase	gnl\|CDD\|349884	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides. Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminus, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Also included is the Staphylococcus aureus metallopeptidase, Sapep, a Mn(2+)-dependent dipeptidase where large interdomain movements could potentially regulate the activity of this enzyme.	1.61139e-165
NZ_CP048407.1\|WP_116900356.1\|1869219_1870218_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.88087e-52
NZ_CP048407.1\|WP_116900374.1\|1843368_1844256_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.05284e-43
NZ_CP048407.1\|WP_116900368.1\|1853568_1855566_-\|VWA-domain-containing-protein	gnl\|CDD\|226082	COG3552, CoxE, Protein containing von Willebrand factor type A (vWA) domain [General function prediction only].	1.53299e-49
NZ_CP048407.1\|WP_116900379.1\|1848571_1849354_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	9.42493e-73
NZ_CP048407.1\|WP_116900359.1\|1864062_1865001_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.30206e-70
NZ_CP048407.1\|WP_116900375.1\|1841719_1843066_-\|XdhC-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	2.70194e-48

>NZ_CP048407.1|WP_116900368.1|1853568_1855566_-|VWA-domain-containing-protein
MEAPSKTLRDHVIHLVRRLRAAGVPTSPADAVNVLAALEHVDLEDPAEVRAALRVVLARRPEHLAVVERALDAFFWGEPVNRRLPEWLARRRPGQAGPVADSGSSGYPGDPARGPWGVGDGEPPSGVPPSVADLTGASAANAASAGAASANATAGGTAAASADAATVPSAGATAATAASPSEAMAAAGPGSIPGLGSPYGPTGFPVHDPSLAGVDPLVPDITALPGRPGDRYDPHGSDLMADPAELADYLIMVLLSPAGTVSLAGPDGAPGARGDATGPGPDTPGGGWGSGAQGAGSPNPDDPHTAGHEPSRGPGQRDAGGHDPTAAGAGGEAPGGQGPSGQGPGGQGGSPGSEDAPASSLAWRARAGGSPGGYSPLAVLTRRDVHVLDDASRRLVMAAARELGRRLATRPSRRFVRARKGPIDGRRALREAARKAGDLFRWPRRRRRPGQLRLVAVLDVSGSMDVYSQLFLHFLHGLQQQGGRVETFALGTRLTRLTSVLRTPRPEIAMARAATVTVDWSGGTRLGEGLWALAQRYGYLLDPDTVLLVISDGLDRGNLDLLDRALRWCRRRVRAVVWMNPLAGDPRYEPLARGMQVALPHIDVLAPAHSLQSLVELALWLRRHPSTFRQLHRRNRPGARRYLSRTGAGAGSGFGREFGRGVRHR
>NZ_CP048407.1|WP_116900369.1|1850477_1853537_+|beta-galactosidase
MASEILSPIQGAAPQPGAALGAGIRPGAPARPASSFWLGVNYWASGQGVAMWQDWQPEAIAAELRALAAAGCRVVRFFLRWVHFQPEEDRVDPTALARLKAFCDLAHGVGLAVIPTFFTGHMSGENWDVPWRRGRCPYTDPAMLRAQVRLIRAVAEAIGHHPALLAWDLANEPDIFARPPSPDAGWLWCRLLYRELKAVTPWVPVTLGIHVASLVDDCGFRPADVAEAADFLCMHLYPIYSPWCPDPVGTIRPNLLVPFGDRLVAAMGQRPALAEEFGGTTLMMSPARHGRYVSAVLGSLLLHGSMGAVAWCGLDFRCQEDLPYDSTPYEVAFGILDDQGRPKPAGEAFRRFARLLERLPEGLVPAPRPAAILLPERYYENQDPDITPERNFAVLFNAFVLARRAGLPVDLVRPDADWTGYRLLIVPCLPRRNSLSNRTWNRLRRWVEQGGTLYLSYDGAALPGMEAVFGIRIEDAYPREAVHGPGPWDLVLDLDLRPEPQSGPERRCGPEPRCGPGPRGGPEPRGGLEPQTSGEGSRDGGDQAGGRADRTGEELRQGGAAAAGGACGGTHGGTRIVHHGAAAAGDAGGGGNDAGNGAMAGARSDGGMAWVGSEPWDGGGVGSGGYPRDSGGAAALGTLAHSGLQPVVRLIPAPRPAPRKRLVASPAGARVAGWIRPAPATGTGPAGPVHPPAAAAHGGHPTGPLEEPAVFVHRYGRGWAVLVTDPLEWILACTPGAYGSEAHGSSACGSSAYGSSAYGSSACGVGASGSGGEHHGPEYRGPEPHRGYGRSQDGPGSEGSAGPEGEARAEAPASSSGLATAGRTRPEQVYRLAARLAGIVPEWEADHADVEVGVLVQGAPGQPWAGGPGPGSRATGTVPESLPLSVPARYLVVVSHHPQPVSVVLSGLAPARLVDAETGATLYARSNGRRPVPAPWPRAAVPDPGARPAPGTNWAAEAPPAGAGAPYPLSHGASHGEAGRWQTPPVRLEPGSWRVFRIEDLDQEIPRCDPDVAIQVHHS
>NZ_CP048407.1|WP_116900370.1|1849376_1850462_+|glycosidase
MLRVLDPQHARAYLLGPFAKHPGNPILGPQGTTWEAKDVFNPAAVVKDGRVYMLYRAEDHTGPGQWNGTSRIGLAVSDDGIHFERYPDPVLEPTEPYELPGGCEDPRVACIDGRYFLTYTAYDGTSARLCLATSDDLVRWEKHGVLFPEWDGGTGRVWSKSGAICPVKINGRYVMYFGDTSIWIATSEDGLRWQPEPEPVLQVRTAGDAFDTLLVEPGPSPLVTDRGILLIYNAAHRLADAPRVRRRVEAAMAGNEAAGPATWPEGEEPAAAGEPPAYGGPAGSGYVRYAAGQALFDLKDPRKLIWRSEIPFFEPETPEEIRGQVDHVVFVEGLVEHRGTWFLYYGMADSRIGVATYRPQS
>NZ_CP048407.1|WP_116900379.1|1848571_1849354_+|carbohydrate-ABC-transporter-permease
MLVPLLWMISTSLKGRDQLYVYPPQWIPSPVRWENYVEVWTTLPFARFFLNSLFITILATVAEVASVAVVAYGFARFNFRGRHFLFMLMLSTMMLPSVIGMIPTFLIWRELGRLDTFTPLTAPAWFAWGPASVFMLRQFLLSLPRDFEDAAVLDGAGPLQVLRHVVLPMVRPALLVIALLAFQGNWTNFMAPLIYLNTPDKFPVTLGLKFLETSLGPGSEAPMWNLMMVVSLLVALPILVLYALAQRAFIEGIRLGGTKG
>NZ_CP048407.1|WP_116900371.1|1847508_1848612_+|sugar-ABC-transporter-permease
MWSWYVDALRDYVATVILLGILMLLVYAGLRALGRSRETALGFTFVLPWLVGFMAFQLFPFVASLYLAFTDYDVLTPPRWVGLANFARLLDDPKFAASLKFTALYALFSVPLGIAGSLACALLLNRNIKGVGFWRTLYYVPAVIPAVATAVLWRWLLSTDGLVNAVLGPVYALLGMEKPRWFLDPGTILPGFVIMSLWGVFGANTVILLAGLKNIPRELYDAAAVDGATGWGRFRHVTLPMLSPTLFYVLVTGLIGALQMFTQAFFIETPRSTVTFLQVYIYQEAFGLRHMGYASAMAWVFLLVILGLTLLVFRSSPLWVYYESEVRGEDRAARGAKAPGRRLHLFRAGLRRRLRAGAPAVDDQHVA
>NZ_CP048407.1|WP_116900372.1|1845920_1847273_+|sugar-ABC-transporter-substrate-binding-protein
MNLVTWFKQRALGRWARTLTMLLATAVLATGCSLPSAGGSQPSGSTGGSEPAAGGPGGEKVTIRLATWAHAEEAKELQAILDRINAESDRWQIVHEPIPSDYATKIQTMLAGNTAPDLFWLAQEDVIPFAATGVLLKLDEHLQGDSRPAANLSDYFEPILGAFTHEGGVYGLPWIAQPVVLYYNKALFDEAGVPYPDETWTWDTFKEAAAKLTRDTNGDGKPDVYGFTMNGWPPFAMFVWQAGGDIVGEDGRTAPIDSPEALEAARFYQELIYNPKYAVPEDVIAEQGFADMFKAGKVAMFMGGASDDLDRVPNLDVGVAPVPSGPKGRVTFAWTAATVVNARSPHVEEAIDALIELTEGIHHWKIVAPRKSLATREHLLESEPRKEKAADVILQSLEFMRPLRIVPQYKAFDQALWEQYLDPLFHKQGKPEELAPKVRPELEKILQQES
>NZ_CP048407.1|WP_116900373.1|1844538_1845792_+|ROK-family-transcriptional-regulator
MKRRPAQQGKDKGLAAPSGRPQLLRLHNRTLILSLLRQQPLSRAELSRRAGLALPTVSRLVDQLIRDGLVEEGQKQATGGRHATRLHLRAEAGFVLGAELGRDQISVVLSDLQGSVRAQAGQPRAETAEHDVARLATMAGGLLKEAGVDPRRLVGIGVGVPGPLDASAGTVIQPPNFRGWSYVPLRDLLRERFRVPVWIENDANAGALAEHVLGYPQSRNLAFVLADAGVGAGLVLEGQLYRGAGGAGELGHCPVQLGGPTCPCGRRGCVEAIASTDAMLERFTALRHEPAGPAPAGFEDLLAAEAAGDPLARQVLARGGRALGAGLAILANLVSPEVVVLGGRSIRSPSFLQAARRELGRRRFGTGEVKLATTQLGRTSVARGAALLALQGLFQSPFTMGAEALPPSGPVPQGAGG
>NZ_CP048407.1|WP_116900374.1|1843368_1844256_-|MoxR-family-ATPase
MHEAVQDILTRLEERGYIGDRSIATAIHLAIRLEKPLLIEGHAGVGKTEIARVMADVLETDLIRLQCYEGLDAASALYEWNYPRQLLRIRMQEGDRRDAAEREAEIFSPEFLLKRPLLDAITREDRAPVLLIDEVDRADEEFEAFLLEVLADFQVTIPELGTIRAQHRPFVVLTSNRVRELSEALRRRCLYLWIGYPDFAKETRIVEARLPGINRRLAEQIVRFIQKLRTLGLNKPPGVAETLDWARALVALHRDELDEETVEATLGCVLKHVEDVERLDRGELQKILASVRGEP
>NZ_CP048407.1|WP_116900375.1|1841719_1843066_-|XdhC-family-protein
MEAVTAAILAALEEGRAGAVATITRARGSTYRREGARMWIPAAGEPVGSLSGGCLEGDVLAVAAEVIATGRPRRVGYDMTADDDALWGLGLGCNGAVDVLIEPLQSGHGQVLRWREQGHRLAVVVPLPPLEPRDPAGAEPAAGAAGDPDASGAVAGCGTAWPGEGDGVPREAGDGAAPGALPPGTAGDGATGAGATGARGTGRPAGGGAGRSVPRRQLVVWADGSSEGSLGSPELDAHCAAAARQWLAAGRTGTLAVPGGGEFFIEVVLPPPVLLVCGAGHDAVPVVETAAPLGYDVVVADSRPSFARPDRFPRARRVVRTHPEDLRRHVTLDDRTFVVIMTHNFLQDAGFLEAVLDSPVRYIGLLGPRHRAERLLEELRRRGIEPAEEQLARIHAPVGLDTGGETPEEIACSLLAEVQAVRYGRKGGFLRDRPGPIHPRAEEERARG
>NZ_CP048407.1|WP_116900376.1|1840574_1841723_-|pseudouridine-5'-phosphate-glycosidase
MTSQTPSQTPSQGGASPARQEGPGGPPAPTGPAAPPAPSRSGTRTGPQGGFQPGSQPPRFHLGDEVREALSRGRPVVALESTIIAHGFPYPDNLEMALAVEEEVRRAGAVPATVAILDGCLRVGLNRAELERVARSPDLPKASIRDLPVLCALGRSAATTVASTAQVAAWAGIDVFVTGGLGGVHRGWGQTLDISADLPALARLSLVVVSAGAKTVLDVAATLEYLETHGVTVLGYGTSEFPGFYLRSTGLPVDARIDSPDDAAAVLRARRALGLPGAVVVANPIPLADAVDEAEFNRWLAQAEADLAAEGVKGKAVTPFLLARLHALSGGRTVAANRALVLNNARLGAAIARSLCGLPPFPAGPGPEEPAARGRGGRPALR
>NZ_CP048407.1|WP_164581349.1|1858740_1859964_+|IS21-family-transposase
MKRLYELHGEGRSIREIARILGISRNTVRRYLRATEVPKPAPRAARGSKLDPYKEFILQRVAEGVENCVVLLRELRTQGYEGGYTILKEFVRPLRRPRSMPGTVRFETQPGQQTQVDWGSCAYTLPDGTDRRKWVFAMVLSWSRALYVEFVDRADTATFIRCHLNAFRYFGGVPETCLYDRTKLVVLGLDENGEPKWNERFLDFALRLGFAIRLCQGYRPQTKGRVESGIKYVKGNFWPAVRFTDLDDLNRQALAWCDTVANVRIHGTTHERPVDRLAIERGALRPLPPQERLRPWLREQRQVGRDGYVQWERAWYGLPWPWRPGQLVQVQPGEGVVELWVGDQRVAVHPRALRPGQRFTHPQQWAGLSAKRGRPRPEPRAVQWPTVEVERRSLSTYEALAEAVSRR
>NZ_CP048407.1|WP_135225726.1|1859960_1860761_+|ATP-binding-protein
MIALEKARQYLEQLGLSHAAAVLESRLEAAAQKQLPYPDFLVDLLGLEAAARRERYLRTRTRLAHLPFHRTLEQFDFGFQPSVDERQIRELATLAFVADAANVIFLGPPGVGKTHLSVALGIKAIEAGYGVYFVRAHELLEDLRRAQAEHRLDRRMRVYLAPKVLIIDEFGVWPYDRAAATALFALISARYERGSIILTSNKGFAEWGEVLGDSVIATAILDRLLHHSHVINIRGESYRLREKKRAGLFGGTPPRREVMPQDGSAE
>NZ_CP048407.1|WP_164581350.1|1861168_1862364_-|IS3-family-transposase
MPATKPPYPPEFRAEAVRLVRESGKKLQQIAADLGVSEASLRKWVRQAGIDAGQRPGLTTAEREELNRLRRENRILREERENLKKSRSLFCPGEPTEPVTVFRFIEQEKAHHPVATLCRVLGVSTSGYYAWRQRGASRRSQEDADLSQRIRLIHAGSRGTYGAPRIHAELRLTHGVRCGRKRVARLMRAMGLAGVHRRRTRGITLRDPRRPVYPDRLGRQFVPDAPNRVWVADLTQHRTEEGWLYLATVVDAFSRAVVGWAMGDRPVAELVVDAVTMAVRRRRPGPGLIHHSDHGVQYTSLAFTRRLEVLGIAGSMGSVGDALDNAMAESFYATLQRELLDRQAWATRDQLRMAIFEYVEGFYNRRRRHSALGYLSPYEYEERWIQERKAQPQEGVVA
>NZ_CP048407.1|WP_116900360.1|1862385_1863255_-|CRISPR-associated-endonuclease-Cas3''
MNTVRGWIPLERCVARPPEGGRAYPLVDHLVEVARRAGDPQGSVDDQLLYLAGLLHDAGKARRSWQERLLDPQRRGPVGPHAFVGAALFAALVLQWNRGPGVQAGAGGTVTPSATLAVDRLLALTRDIADHHGTLADLETDTPWQALWTPGVLDEMDVEGLLRLVRAANLPIAAGRWPRDGAEWGRWVDLARGAWGRAVVRLQRHRQTASLEVRRLLRHHTARLIQADRFSVAGIEPETLLPGEAAAAIERLEASLGAAGSAAGDATGSGATRGIWTCPGLVDTPILGA
>NZ_CP048407.1|WP_116900367.1|1863325_1864039_-|CRISPR-associated-protein-Cas5
MPLLVFDVAGSIAHYRRPDTAVTHATYPFPTRTALRGMLGAILGLPEWTTREAWTGVRCLRPIRTRSQELSLLGKGWLGGSDSFNRPTAIELVVEPAYRVYYAGPDADDLAERIRNQQSVYPTYLGSAFALTVPRFVAVEEAEELDWAPEVAGDGEPVESPAVVPAHVVAGVEPVPGRVYARVGGVLHTHLGGRRFRRSMSFLYEPNGGSLRFRPAPGPYDPPVRWVRCSDGLVCLW
>NZ_CP048407.1|WP_116900359.1|1864062_1865001_-|type-I-CRISPR-associated-protein-Cas7
MAVRSGELLFVKSVKDGIPNRDPLNDSDARRLFDEEDGRISLSDVSIKRDVRDYVLARYPDGGDGTRHIYVREARSADGKLLGRKALAEQVLGISPGEARAELPRKAFDVRAFGVVYSVRDVSFHLTGPVQFAWAHSLHPVESRYVQGTVVMASEDDRGKEQGTIWTTYIVPFAVFAMHGIINATLAKETGLSSEDVDLVLEGLWKGTRFRQARGRGIQEPLFLLHVEYQDPFFRIGDLDRLVRLEPGREAWLQPSRPTSVAEVSLDVQVLGQRLLEFQDRIARVRYWLNPAFQLQGDAALRELGGEPQPAM
>NZ_CP048407.1|WP_116900358.1|1865083_1867186_-|hypothetical-protein
MLIENLVRLGRPFLGQSAAARETLLDITDVGSPQAVGFFCNVIIVEVDESHPDKPVAAWPLQDWTARRVQGKSEVVETKLDIAVAAPFTLPRGGNPRHAQGRYPVPAYIIYEGDLAAFHDGGVVERFIQGRWERTLHRPDAAVGVVARAAAAMVTGASLGKAGKGRKVMGLLLIVPVTGEGPYRYMEGPAADPNTVVELGASRLYPGRRVVAYLPALVPLVWAAKAEEGATLGQMQGTCTLCHREGDVVSIYSKAWPWFAPTWEAPFPETLAKEELVEGAALCTDCYAALTQGAQVFNALTRPLPLWLTRELFAPADSPGGREMAERGRMPGTIYGTGFVLPLSDGIFRDPEAVEQFCTGFMYMRTGEAGWTRHLESVAGFEFAVADDFFTDHYRITLVYFSGAPERGDIHLRAMIEDVVPAVASEVRDALYEVVSTHEELIRGGNRFADEALRRLRSLPSLLINAYGPGYVWQGMEAVLRRRPISYRRFVRNLALRLTELAHRLGDRQAMYRMQAEIRLYVVFRDFWQRYHRDIAGQWPAGEVFAIRPWQELQAELRSIPPQELDLQDVEELGFAIGDLTRQFSRQYYAATRGKEFLKHRVMTFGTNLTPEAIITRALTRFPEYAARLNMALSERFRHLNGVLLVKAQQARREVQAQPDRFLAGFWAGYLLADANRPGAGSESGEPAGELEDETPGATA
>NZ_CP048407.1|WP_116900357.1|1867175_1868411_-|CRISPR-associated-endoribonuclease-Cas6
MRVIMELRPVSGQLVLPLQYNSLLQGLVYHLLEGTDVAGFLHDQGFTRGARRYKMFTFSRLEGMYTIERSPGGAAGRGTRGDRGSDGSPNGKGEASGTTGASGTAGIPGTAGTSGTTHASGGGIAGGTGGAGLASGTGGAASTGLDGASGTSGASGTGSNAVNITGDTGGGSGPNNGNGPNNGSGLHGPNGSKAIRFAGSVHFTVSSPFAPVVHALASRALQLGTLRLGSQLVEIESVRFEELPSITPPVTLRARTPITVYSTVNRPDGSRFTYFFEPRSGEFERLVAENLVRKWEAFTGRTYEGPGIQIRWWGTARGHVARFRHGIIKGYTGTFEATGDPALIALGLEAGFGSKNAQGFGLCDLVSARAQTPSRGNGRAAEEPVPALRNGEETAPAVEVAVSREVKEGAD
>NZ_CP048407.1|WP_116900356.1|1869219_1870218_-|WYL-domain-containing-protein
MPMNRAQLHRLVRIVDELRAKRYPNARTLAEKLEVTSRTIHRDLDVLRDDWHAPLEFDRRRNGYYLADPGWQPPVGAGLARLGAGEALALVLGLQALEAVRAHGLEDAFRTLLNRLPELLPDQVTVDLASLAHQVSFFFEPARGDPEAVGERLGALRAAIEGCRVVRLRYYTASRDQETTRLVEPYHLRYYDGAWYVAGFCRWRQDVRTFAVDRIREIEVLAETFPPPTPDRFSPDVYFGEAWRLQRGAERQKVVVRFHPPQARYVRGRTWHPSQESREEPDGSLVLSFRVLGTEEIMRWLLQFGAGVEVLEPASLREAMAAEAAAMARVYR
>NZ_CP048407.1|WP_116900355.1|1870594_1872232_-|Sapep-family-Mn(2+)-dependent-dipeptidase
MAGEGEVRENAGGAGHGRLAGEDAAGEAHFVAELDRWLGEHRQAMIEAVQALCRIRSVQDEPAPGQPFGPGVAEALEWIRRHAEAMGFRTRNLDGYAVDAEIGEGEEWIAVLGHVDVVPEGTGWTYPPYGAEIHDGRIYARGAVDDKGPTVAALYALKAVADLALAQGRRPARRARLVVGGNEESGFECVKYYFAREPQPALGFSPDAMFPLVNAEKGMWTFRLSLELPGEAQAAGTGWRARLLRLEGGTRVNVVPEHAVAELAVEGPGAPSLDELARRLQDGGGPGRARITARVEGERLVVEARGAAAHAMHPEKGINAVAGLLNALARALGPALPRSSDLAFLAGAGARTDGSGFGIAVADQVSGPLTVNLGLIRLVGEHPLQGAASLAAGAPGEAAAPEASRGAGRAGTAGAILYADCNVRYPVTASAQDLARRVVAALAGTGWRFESREDMPPHHVPDDSEIVRRLLAVYREEAGDPAARPLAIGGGTYARVLRNGVAFGPLFPGQRELAHEPDEYWSIDDLVRCVRIYARALYRLMFAPR

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Crispr_ID: NZ_CP048407_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_5

1858088-1858587

TypeI-B

Consensus_repeat	Method
GTTTGTAGGGTACCTATGAGGGATCGAAAC	CRISPRCasFinder
GTTTGTAGGGTACCTATGAGGGATCGAAAC	CRT
GTTTGTAGGGTACCTATGA---GGGATCGAAAC	PILER-CR

7 spacers

cas3HD,cas5,cas7b,cas8b1,cas6,WYL

The CRISPR arrays of NZ_CP048407_5

>merge|NZ_CP048407|5|1858088-1858587|CRISPRCasFinder,CRT,PILER-CR
GTGTCAAAGTCGAGTATGAGGGATCGAAACATCGGGCACTCGGGCCACGGCCAACGCTGGTGCGGTCGGTTTGTAGGGTACCTATGAGGGATCGAAACTACTGCGGCCACACTGGCCGTGTCAAGCTGGCTGTCGTTTGTAGGGTACCTATGAGGGATCGAAACGAAGGGATGGATGCCTCTCGTTCATGCGTGGTACGCGTTTGTAGGGTACCTATGAGGGATCGAAACTGGCCCATGGGGCTGGTGGTGAAGATGCCCCAGCCCCGCGTTTGTAGGGTACCTATGAGGGATCGAAACAACGCCTCCGCATTGAGCGGGTCGAGGCCGTCCGAGCGTTTGTAGGGTACCTATGAGGGATCGAAACCGCAGGTCGATGAGCGTATCTCGCAGCGACTCATTCTGTTTGTAGGGTACCTATGAGGGATCGAAACCGGGAGTACGCGGAGTGGGCCGCCTTTTATGCGGCCGGTTTGTAGGGTACCTATGAGGGATCGAAAC

>NZ_CP048407|5|5|1858088-1858587|CRISPRCasFinder
GTGTCAAAGTCGAGTATGAGGGATCGAAAC	ATCGGGCACTCGGGCCACGGCCAACGCTGGTGCGGTCG
GTTTGTAGGGTACCTATGAGGGATCGAAAC	TACTGCGGCCACACTGGCCGTGTCAAGCTGGCTGTC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	GAAGGGATGGATGCCTCTCGTTCATGCGTGGTACGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	TGGCCCATGGGGCTGGTGGTGAAGATGCCCCAGCCCCGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	AACGCCTCCGCATTGAGCGGGTCGAGGCCGTCCGAGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	CGCAGGTCGATGAGCGTATCTCGCAGCGACTCATTCT
GTTTGTAGGGTACCTATGAGGGATCGAAAC	CGGGAGTACGCGGAGTGGGCCGCCTTTTATGCGGCCG
GTTTGTAGGGTACCTATGAGGGATCGAAAC

>NZ_CP048407|5|2|1858088-1858587|CRT
GTGTCAAAGTCGAGTATGAGGGATCGAAAC	ATCGGGCACTCGGGCCACGGCCAACGCTGGTGCGGTCG
GTTTGTAGGGTACCTATGAGGGATCGAAAC	TACTGCGGCCACACTGGCCGTGTCAAGCTGGCTGTC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	GAAGGGATGGATGCCTCTCGTTCATGCGTGGTACGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	TGGCCCATGGGGCTGGTGGTGAAGATGCCCCAGCCCCGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	AACGCCTCCGCATTGAGCGGGTCGAGGCCGTCCGAGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	CGCAGGTCGATGAGCGTATCTCGCAGCGACTCATTCT
GTTTGTAGGGTACCTATGAGGGATCGAAAC	CGGGAGTACGCGGAGTGGGCCGCCTTTTATGCGGCCG
GTTTGTAGGGTACCTATGAGGGATCGAAAC

>NZ_CP048407|5|2|1858156-1858587|PILER-CR
GTTTGTAGGGTACCTATGAGGGATCGAAAC	TACTGCGGCCACACTGGCCGTGTCAAGCTGGCTGTC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	GAAGGGATGGATGCCTCTCGTTCATGCGTGGTACGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	TGGCCCATGGGGCTGGTGGTGAAGATGCCCCAGCCCCGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	AACGCCTCCGCATTGAGCGGGTCGAGGCCGTCCGAGC
GTTTGTAGGGTACCTATGAGGGATCGAAAC	CGCAGGTCGATGAGCGTATCTCGCAGCGACTCATTCT
GTTTGTAGGGTACCTATGAGGGATCGAAAC	CGGGAGTACGCGGAGTGGGCCGCCTTTTATGCGGCCG
GTTTGTAGGGTACCTATGAGGGATCGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116900360.1\|1862385_1863255_-\|CRISPR-associated-endonuclease-Cas3''	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|273711
NZ_CP048407.1\|WP_116900371.1\|1847508_1848612_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP048407.1\|WP_116900370.1\|1849376_1850462_+\|glycosidase	unknown	unknown	gnl\|CDD\|350122
NZ_CP048407.1\|WP_116900372.1\|1845920_1847273_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP048407.1\|WP_116900373.1\|1844538_1845792_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP048407.1\|WP_116900369.1\|1850477_1853537_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|226444
NZ_CP048407.1\|WP_135225726.1\|1859960_1860761_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP048407.1\|WP_116900355.1\|1870594_1872232_-\|Sapep-family-Mn(2+)-dependent-dipeptidase	unknown	unknown	gnl\|CDD\|349884
NZ_CP048407.1\|WP_164581349.1\|1858740_1859964_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP048407.1\|WP_116900376.1\|1840574_1841723_-\|pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl\|CDD\|377251
NZ_CP048407.1\|WP_116900357.1\|1867175_1868411_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NZ_CP048407.1\|WP_164581350.1\|1861168_1862364_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP048407.1\|WP_116900367.1\|1863325_1864039_-\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NZ_CP048407.1\|WP_116900358.1\|1865083_1867186_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NZ_CP048407.1\|WP_116900356.1\|1869219_1870218_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP048407.1\|WP_116900374.1\|1843368_1844256_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP048407.1\|WP_116900368.1\|1853568_1855566_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226082
NZ_CP048407.1\|WP_116900379.1\|1848571_1849354_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP048407.1\|WP_116900359.1\|1864062_1865001_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP048407.1\|WP_116900375.1\|1841719_1843066_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|379212

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116900360.1\|1862385_1863255_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|273711	TIGR01596, CRISPR-associated_endonuclease_Cas3-HD, CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.	2.33205e-10
NZ_CP048407.1\|WP_116900371.1\|1847508_1848612_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.24354e-79
NZ_CP048407.1\|WP_116900370.1\|1849376_1850462_+\|glycosidase	gnl\|CDD\|350122	cd18610, GH130_BT3780-like, Glycosyl hydrolase family 130, such as beta-mammosidase BT3780 and BACOVA_03624. This subfamily contains glycosyl hydrolase family 130, as classified by the carbohydrate-active enzymes database (CAZY), and includes Bacteroides enzymes, BT3780 and BACOVA_03624. Members of this family possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. GH130 enzymes have also been shown to target beta-1,2- and beta-1,4-mannosidic linkages where these phosphorylases mediate bond cleavage by a single displacement reaction in which phosphate functions as the catalytic nucleophile. However, some lack the conserved basic residues that bind the phosphate nucleophile, as observed for the Bacteroides enzymes, BT3780 and BACOVA_03624, which are indeed beta-mannosidases that hydrolyze beta-1,2-mannosidic linkages through an inverting mechanism.	3.36935e-163
NZ_CP048407.1\|WP_116900372.1\|1845920_1847273_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.38211e-79
NZ_CP048407.1\|WP_116900373.1\|1844538_1845792_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.53999e-62
NZ_CP048407.1\|WP_116900369.1\|1850477_1853537_+\|beta-galactosidase	gnl\|CDD\|226444	COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and metabolism].	2.18762e-34
NZ_CP048407.1\|WP_135225726.1\|1859960_1860761_+\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.78086e-80
NZ_CP048407.1\|WP_164581349.1\|1858740_1859964_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.00093e-44
NZ_CP048407.1\|WP_116900376.1\|1840574_1841723_-\|pseudouridine-5'-phosphate-glycosidase	gnl\|CDD\|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	1.56684e-160
NZ_CP048407.1\|WP_116900357.1\|1867175_1868411_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.37825e-26
NZ_CP048407.1\|WP_164581350.1\|1861168_1862364_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.05521e-74
NZ_CP048407.1\|WP_116900367.1\|1863325_1864039_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.17007e-21
NZ_CP048407.1\|WP_116900355.1\|1870594_1872232_-\|Sapep-family-Mn(2+)-dependent-dipeptidase	gnl\|CDD\|349884	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides. Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminus, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Also included is the Staphylococcus aureus metallopeptidase, Sapep, a Mn(2+)-dependent dipeptidase where large interdomain movements could potentially regulate the activity of this enzyme.	1.61139e-165
NZ_CP048407.1\|WP_116900356.1\|1869219_1870218_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.88087e-52
NZ_CP048407.1\|WP_116900374.1\|1843368_1844256_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.05284e-43
NZ_CP048407.1\|WP_116900368.1\|1853568_1855566_-\|VWA-domain-containing-protein	gnl\|CDD\|226082	COG3552, CoxE, Protein containing von Willebrand factor type A (vWA) domain [General function prediction only].	1.53299e-49
NZ_CP048407.1\|WP_116900379.1\|1848571_1849354_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	9.42493e-73
NZ_CP048407.1\|WP_116900359.1\|1864062_1865001_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.30206e-70
NZ_CP048407.1\|WP_116900375.1\|1841719_1843066_-\|XdhC-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	2.70194e-48

>NZ_CP048407.1|WP_116900368.1|1853568_1855566_-|VWA-domain-containing-protein
MEAPSKTLRDHVIHLVRRLRAAGVPTSPADAVNVLAALEHVDLEDPAEVRAALRVVLARRPEHLAVVERALDAFFWGEPVNRRLPEWLARRRPGQAGPVADSGSSGYPGDPARGPWGVGDGEPPSGVPPSVADLTGASAANAASAGAASANATAGGTAAASADAATVPSAGATAATAASPSEAMAAAGPGSIPGLGSPYGPTGFPVHDPSLAGVDPLVPDITALPGRPGDRYDPHGSDLMADPAELADYLIMVLLSPAGTVSLAGPDGAPGARGDATGPGPDTPGGGWGSGAQGAGSPNPDDPHTAGHEPSRGPGQRDAGGHDPTAAGAGGEAPGGQGPSGQGPGGQGGSPGSEDAPASSLAWRARAGGSPGGYSPLAVLTRRDVHVLDDASRRLVMAAARELGRRLATRPSRRFVRARKGPIDGRRALREAARKAGDLFRWPRRRRRPGQLRLVAVLDVSGSMDVYSQLFLHFLHGLQQQGGRVETFALGTRLTRLTSVLRTPRPEIAMARAATVTVDWSGGTRLGEGLWALAQRYGYLLDPDTVLLVISDGLDRGNLDLLDRALRWCRRRVRAVVWMNPLAGDPRYEPLARGMQVALPHIDVLAPAHSLQSLVELALWLRRHPSTFRQLHRRNRPGARRYLSRTGAGAGSGFGREFGRGVRHR
>NZ_CP048407.1|WP_116900369.1|1850477_1853537_+|beta-galactosidase
MASEILSPIQGAAPQPGAALGAGIRPGAPARPASSFWLGVNYWASGQGVAMWQDWQPEAIAAELRALAAAGCRVVRFFLRWVHFQPEEDRVDPTALARLKAFCDLAHGVGLAVIPTFFTGHMSGENWDVPWRRGRCPYTDPAMLRAQVRLIRAVAEAIGHHPALLAWDLANEPDIFARPPSPDAGWLWCRLLYRELKAVTPWVPVTLGIHVASLVDDCGFRPADVAEAADFLCMHLYPIYSPWCPDPVGTIRPNLLVPFGDRLVAAMGQRPALAEEFGGTTLMMSPARHGRYVSAVLGSLLLHGSMGAVAWCGLDFRCQEDLPYDSTPYEVAFGILDDQGRPKPAGEAFRRFARLLERLPEGLVPAPRPAAILLPERYYENQDPDITPERNFAVLFNAFVLARRAGLPVDLVRPDADWTGYRLLIVPCLPRRNSLSNRTWNRLRRWVEQGGTLYLSYDGAALPGMEAVFGIRIEDAYPREAVHGPGPWDLVLDLDLRPEPQSGPERRCGPEPRCGPGPRGGPEPRGGLEPQTSGEGSRDGGDQAGGRADRTGEELRQGGAAAAGGACGGTHGGTRIVHHGAAAAGDAGGGGNDAGNGAMAGARSDGGMAWVGSEPWDGGGVGSGGYPRDSGGAAALGTLAHSGLQPVVRLIPAPRPAPRKRLVASPAGARVAGWIRPAPATGTGPAGPVHPPAAAAHGGHPTGPLEEPAVFVHRYGRGWAVLVTDPLEWILACTPGAYGSEAHGSSACGSSAYGSSAYGSSACGVGASGSGGEHHGPEYRGPEPHRGYGRSQDGPGSEGSAGPEGEARAEAPASSSGLATAGRTRPEQVYRLAARLAGIVPEWEADHADVEVGVLVQGAPGQPWAGGPGPGSRATGTVPESLPLSVPARYLVVVSHHPQPVSVVLSGLAPARLVDAETGATLYARSNGRRPVPAPWPRAAVPDPGARPAPGTNWAAEAPPAGAGAPYPLSHGASHGEAGRWQTPPVRLEPGSWRVFRIEDLDQEIPRCDPDVAIQVHHS
>NZ_CP048407.1|WP_116900370.1|1849376_1850462_+|glycosidase
MLRVLDPQHARAYLLGPFAKHPGNPILGPQGTTWEAKDVFNPAAVVKDGRVYMLYRAEDHTGPGQWNGTSRIGLAVSDDGIHFERYPDPVLEPTEPYELPGGCEDPRVACIDGRYFLTYTAYDGTSARLCLATSDDLVRWEKHGVLFPEWDGGTGRVWSKSGAICPVKINGRYVMYFGDTSIWIATSEDGLRWQPEPEPVLQVRTAGDAFDTLLVEPGPSPLVTDRGILLIYNAAHRLADAPRVRRRVEAAMAGNEAAGPATWPEGEEPAAAGEPPAYGGPAGSGYVRYAAGQALFDLKDPRKLIWRSEIPFFEPETPEEIRGQVDHVVFVEGLVEHRGTWFLYYGMADSRIGVATYRPQS
>NZ_CP048407.1|WP_116900379.1|1848571_1849354_+|carbohydrate-ABC-transporter-permease
MLVPLLWMISTSLKGRDQLYVYPPQWIPSPVRWENYVEVWTTLPFARFFLNSLFITILATVAEVASVAVVAYGFARFNFRGRHFLFMLMLSTMMLPSVIGMIPTFLIWRELGRLDTFTPLTAPAWFAWGPASVFMLRQFLLSLPRDFEDAAVLDGAGPLQVLRHVVLPMVRPALLVIALLAFQGNWTNFMAPLIYLNTPDKFPVTLGLKFLETSLGPGSEAPMWNLMMVVSLLVALPILVLYALAQRAFIEGIRLGGTKG
>NZ_CP048407.1|WP_116900371.1|1847508_1848612_+|sugar-ABC-transporter-permease
MWSWYVDALRDYVATVILLGILMLLVYAGLRALGRSRETALGFTFVLPWLVGFMAFQLFPFVASLYLAFTDYDVLTPPRWVGLANFARLLDDPKFAASLKFTALYALFSVPLGIAGSLACALLLNRNIKGVGFWRTLYYVPAVIPAVATAVLWRWLLSTDGLVNAVLGPVYALLGMEKPRWFLDPGTILPGFVIMSLWGVFGANTVILLAGLKNIPRELYDAAAVDGATGWGRFRHVTLPMLSPTLFYVLVTGLIGALQMFTQAFFIETPRSTVTFLQVYIYQEAFGLRHMGYASAMAWVFLLVILGLTLLVFRSSPLWVYYESEVRGEDRAARGAKAPGRRLHLFRAGLRRRLRAGAPAVDDQHVA
>NZ_CP048407.1|WP_116900372.1|1845920_1847273_+|sugar-ABC-transporter-substrate-binding-protein
MNLVTWFKQRALGRWARTLTMLLATAVLATGCSLPSAGGSQPSGSTGGSEPAAGGPGGEKVTIRLATWAHAEEAKELQAILDRINAESDRWQIVHEPIPSDYATKIQTMLAGNTAPDLFWLAQEDVIPFAATGVLLKLDEHLQGDSRPAANLSDYFEPILGAFTHEGGVYGLPWIAQPVVLYYNKALFDEAGVPYPDETWTWDTFKEAAAKLTRDTNGDGKPDVYGFTMNGWPPFAMFVWQAGGDIVGEDGRTAPIDSPEALEAARFYQELIYNPKYAVPEDVIAEQGFADMFKAGKVAMFMGGASDDLDRVPNLDVGVAPVPSGPKGRVTFAWTAATVVNARSPHVEEAIDALIELTEGIHHWKIVAPRKSLATREHLLESEPRKEKAADVILQSLEFMRPLRIVPQYKAFDQALWEQYLDPLFHKQGKPEELAPKVRPELEKILQQES
>NZ_CP048407.1|WP_116900373.1|1844538_1845792_+|ROK-family-transcriptional-regulator
MKRRPAQQGKDKGLAAPSGRPQLLRLHNRTLILSLLRQQPLSRAELSRRAGLALPTVSRLVDQLIRDGLVEEGQKQATGGRHATRLHLRAEAGFVLGAELGRDQISVVLSDLQGSVRAQAGQPRAETAEHDVARLATMAGGLLKEAGVDPRRLVGIGVGVPGPLDASAGTVIQPPNFRGWSYVPLRDLLRERFRVPVWIENDANAGALAEHVLGYPQSRNLAFVLADAGVGAGLVLEGQLYRGAGGAGELGHCPVQLGGPTCPCGRRGCVEAIASTDAMLERFTALRHEPAGPAPAGFEDLLAAEAAGDPLARQVLARGGRALGAGLAILANLVSPEVVVLGGRSIRSPSFLQAARRELGRRRFGTGEVKLATTQLGRTSVARGAALLALQGLFQSPFTMGAEALPPSGPVPQGAGG
>NZ_CP048407.1|WP_116900374.1|1843368_1844256_-|MoxR-family-ATPase
MHEAVQDILTRLEERGYIGDRSIATAIHLAIRLEKPLLIEGHAGVGKTEIARVMADVLETDLIRLQCYEGLDAASALYEWNYPRQLLRIRMQEGDRRDAAEREAEIFSPEFLLKRPLLDAITREDRAPVLLIDEVDRADEEFEAFLLEVLADFQVTIPELGTIRAQHRPFVVLTSNRVRELSEALRRRCLYLWIGYPDFAKETRIVEARLPGINRRLAEQIVRFIQKLRTLGLNKPPGVAETLDWARALVALHRDELDEETVEATLGCVLKHVEDVERLDRGELQKILASVRGEP
>NZ_CP048407.1|WP_116900375.1|1841719_1843066_-|XdhC-family-protein
MEAVTAAILAALEEGRAGAVATITRARGSTYRREGARMWIPAAGEPVGSLSGGCLEGDVLAVAAEVIATGRPRRVGYDMTADDDALWGLGLGCNGAVDVLIEPLQSGHGQVLRWREQGHRLAVVVPLPPLEPRDPAGAEPAAGAAGDPDASGAVAGCGTAWPGEGDGVPREAGDGAAPGALPPGTAGDGATGAGATGARGTGRPAGGGAGRSVPRRQLVVWADGSSEGSLGSPELDAHCAAAARQWLAAGRTGTLAVPGGGEFFIEVVLPPPVLLVCGAGHDAVPVVETAAPLGYDVVVADSRPSFARPDRFPRARRVVRTHPEDLRRHVTLDDRTFVVIMTHNFLQDAGFLEAVLDSPVRYIGLLGPRHRAERLLEELRRRGIEPAEEQLARIHAPVGLDTGGETPEEIACSLLAEVQAVRYGRKGGFLRDRPGPIHPRAEEERARG
>NZ_CP048407.1|WP_116900376.1|1840574_1841723_-|pseudouridine-5'-phosphate-glycosidase
MTSQTPSQTPSQGGASPARQEGPGGPPAPTGPAAPPAPSRSGTRTGPQGGFQPGSQPPRFHLGDEVREALSRGRPVVALESTIIAHGFPYPDNLEMALAVEEEVRRAGAVPATVAILDGCLRVGLNRAELERVARSPDLPKASIRDLPVLCALGRSAATTVASTAQVAAWAGIDVFVTGGLGGVHRGWGQTLDISADLPALARLSLVVVSAGAKTVLDVAATLEYLETHGVTVLGYGTSEFPGFYLRSTGLPVDARIDSPDDAAAVLRARRALGLPGAVVVANPIPLADAVDEAEFNRWLAQAEADLAAEGVKGKAVTPFLLARLHALSGGRTVAANRALVLNNARLGAAIARSLCGLPPFPAGPGPEEPAARGRGGRPALR
>NZ_CP048407.1|WP_164581349.1|1858740_1859964_+|IS21-family-transposase
MKRLYELHGEGRSIREIARILGISRNTVRRYLRATEVPKPAPRAARGSKLDPYKEFILQRVAEGVENCVVLLRELRTQGYEGGYTILKEFVRPLRRPRSMPGTVRFETQPGQQTQVDWGSCAYTLPDGTDRRKWVFAMVLSWSRALYVEFVDRADTATFIRCHLNAFRYFGGVPETCLYDRTKLVVLGLDENGEPKWNERFLDFALRLGFAIRLCQGYRPQTKGRVESGIKYVKGNFWPAVRFTDLDDLNRQALAWCDTVANVRIHGTTHERPVDRLAIERGALRPLPPQERLRPWLREQRQVGRDGYVQWERAWYGLPWPWRPGQLVQVQPGEGVVELWVGDQRVAVHPRALRPGQRFTHPQQWAGLSAKRGRPRPEPRAVQWPTVEVERRSLSTYEALAEAVSRR
>NZ_CP048407.1|WP_135225726.1|1859960_1860761_+|ATP-binding-protein
MIALEKARQYLEQLGLSHAAAVLESRLEAAAQKQLPYPDFLVDLLGLEAAARRERYLRTRTRLAHLPFHRTLEQFDFGFQPSVDERQIRELATLAFVADAANVIFLGPPGVGKTHLSVALGIKAIEAGYGVYFVRAHELLEDLRRAQAEHRLDRRMRVYLAPKVLIIDEFGVWPYDRAAATALFALISARYERGSIILTSNKGFAEWGEVLGDSVIATAILDRLLHHSHVINIRGESYRLREKKRAGLFGGTPPRREVMPQDGSAE
>NZ_CP048407.1|WP_164581350.1|1861168_1862364_-|IS3-family-transposase
MPATKPPYPPEFRAEAVRLVRESGKKLQQIAADLGVSEASLRKWVRQAGIDAGQRPGLTTAEREELNRLRRENRILREERENLKKSRSLFCPGEPTEPVTVFRFIEQEKAHHPVATLCRVLGVSTSGYYAWRQRGASRRSQEDADLSQRIRLIHAGSRGTYGAPRIHAELRLTHGVRCGRKRVARLMRAMGLAGVHRRRTRGITLRDPRRPVYPDRLGRQFVPDAPNRVWVADLTQHRTEEGWLYLATVVDAFSRAVVGWAMGDRPVAELVVDAVTMAVRRRRPGPGLIHHSDHGVQYTSLAFTRRLEVLGIAGSMGSVGDALDNAMAESFYATLQRELLDRQAWATRDQLRMAIFEYVEGFYNRRRRHSALGYLSPYEYEERWIQERKAQPQEGVVA
>NZ_CP048407.1|WP_116900360.1|1862385_1863255_-|CRISPR-associated-endonuclease-Cas3''
MNTVRGWIPLERCVARPPEGGRAYPLVDHLVEVARRAGDPQGSVDDQLLYLAGLLHDAGKARRSWQERLLDPQRRGPVGPHAFVGAALFAALVLQWNRGPGVQAGAGGTVTPSATLAVDRLLALTRDIADHHGTLADLETDTPWQALWTPGVLDEMDVEGLLRLVRAANLPIAAGRWPRDGAEWGRWVDLARGAWGRAVVRLQRHRQTASLEVRRLLRHHTARLIQADRFSVAGIEPETLLPGEAAAAIERLEASLGAAGSAAGDATGSGATRGIWTCPGLVDTPILGA
>NZ_CP048407.1|WP_116900367.1|1863325_1864039_-|CRISPR-associated-protein-Cas5
MPLLVFDVAGSIAHYRRPDTAVTHATYPFPTRTALRGMLGAILGLPEWTTREAWTGVRCLRPIRTRSQELSLLGKGWLGGSDSFNRPTAIELVVEPAYRVYYAGPDADDLAERIRNQQSVYPTYLGSAFALTVPRFVAVEEAEELDWAPEVAGDGEPVESPAVVPAHVVAGVEPVPGRVYARVGGVLHTHLGGRRFRRSMSFLYEPNGGSLRFRPAPGPYDPPVRWVRCSDGLVCLW
>NZ_CP048407.1|WP_116900359.1|1864062_1865001_-|type-I-CRISPR-associated-protein-Cas7
MAVRSGELLFVKSVKDGIPNRDPLNDSDARRLFDEEDGRISLSDVSIKRDVRDYVLARYPDGGDGTRHIYVREARSADGKLLGRKALAEQVLGISPGEARAELPRKAFDVRAFGVVYSVRDVSFHLTGPVQFAWAHSLHPVESRYVQGTVVMASEDDRGKEQGTIWTTYIVPFAVFAMHGIINATLAKETGLSSEDVDLVLEGLWKGTRFRQARGRGIQEPLFLLHVEYQDPFFRIGDLDRLVRLEPGREAWLQPSRPTSVAEVSLDVQVLGQRLLEFQDRIARVRYWLNPAFQLQGDAALRELGGEPQPAM
>NZ_CP048407.1|WP_116900358.1|1865083_1867186_-|hypothetical-protein
MLIENLVRLGRPFLGQSAAARETLLDITDVGSPQAVGFFCNVIIVEVDESHPDKPVAAWPLQDWTARRVQGKSEVVETKLDIAVAAPFTLPRGGNPRHAQGRYPVPAYIIYEGDLAAFHDGGVVERFIQGRWERTLHRPDAAVGVVARAAAAMVTGASLGKAGKGRKVMGLLLIVPVTGEGPYRYMEGPAADPNTVVELGASRLYPGRRVVAYLPALVPLVWAAKAEEGATLGQMQGTCTLCHREGDVVSIYSKAWPWFAPTWEAPFPETLAKEELVEGAALCTDCYAALTQGAQVFNALTRPLPLWLTRELFAPADSPGGREMAERGRMPGTIYGTGFVLPLSDGIFRDPEAVEQFCTGFMYMRTGEAGWTRHLESVAGFEFAVADDFFTDHYRITLVYFSGAPERGDIHLRAMIEDVVPAVASEVRDALYEVVSTHEELIRGGNRFADEALRRLRSLPSLLINAYGPGYVWQGMEAVLRRRPISYRRFVRNLALRLTELAHRLGDRQAMYRMQAEIRLYVVFRDFWQRYHRDIAGQWPAGEVFAIRPWQELQAELRSIPPQELDLQDVEELGFAIGDLTRQFSRQYYAATRGKEFLKHRVMTFGTNLTPEAIITRALTRFPEYAARLNMALSERFRHLNGVLLVKAQQARREVQAQPDRFLAGFWAGYLLADANRPGAGSESGEPAGELEDETPGATA
>NZ_CP048407.1|WP_116900357.1|1867175_1868411_-|CRISPR-associated-endoribonuclease-Cas6
MRVIMELRPVSGQLVLPLQYNSLLQGLVYHLLEGTDVAGFLHDQGFTRGARRYKMFTFSRLEGMYTIERSPGGAAGRGTRGDRGSDGSPNGKGEASGTTGASGTAGIPGTAGTSGTTHASGGGIAGGTGGAGLASGTGGAASTGLDGASGTSGASGTGSNAVNITGDTGGGSGPNNGNGPNNGSGLHGPNGSKAIRFAGSVHFTVSSPFAPVVHALASRALQLGTLRLGSQLVEIESVRFEELPSITPPVTLRARTPITVYSTVNRPDGSRFTYFFEPRSGEFERLVAENLVRKWEAFTGRTYEGPGIQIRWWGTARGHVARFRHGIIKGYTGTFEATGDPALIALGLEAGFGSKNAQGFGLCDLVSARAQTPSRGNGRAAEEPVPALRNGEETAPAVEVAVSREVKEGAD
>NZ_CP048407.1|WP_116900356.1|1869219_1870218_-|WYL-domain-containing-protein
MPMNRAQLHRLVRIVDELRAKRYPNARTLAEKLEVTSRTIHRDLDVLRDDWHAPLEFDRRRNGYYLADPGWQPPVGAGLARLGAGEALALVLGLQALEAVRAHGLEDAFRTLLNRLPELLPDQVTVDLASLAHQVSFFFEPARGDPEAVGERLGALRAAIEGCRVVRLRYYTASRDQETTRLVEPYHLRYYDGAWYVAGFCRWRQDVRTFAVDRIREIEVLAETFPPPTPDRFSPDVYFGEAWRLQRGAERQKVVVRFHPPQARYVRGRTWHPSQESREEPDGSLVLSFRVLGTEEIMRWLLQFGAGVEVLEPASLREAMAAEAAAMARVYR
>NZ_CP048407.1|WP_116900355.1|1870594_1872232_-|Sapep-family-Mn(2+)-dependent-dipeptidase
MAGEGEVRENAGGAGHGRLAGEDAAGEAHFVAELDRWLGEHRQAMIEAVQALCRIRSVQDEPAPGQPFGPGVAEALEWIRRHAEAMGFRTRNLDGYAVDAEIGEGEEWIAVLGHVDVVPEGTGWTYPPYGAEIHDGRIYARGAVDDKGPTVAALYALKAVADLALAQGRRPARRARLVVGGNEESGFECVKYYFAREPQPALGFSPDAMFPLVNAEKGMWTFRLSLELPGEAQAAGTGWRARLLRLEGGTRVNVVPEHAVAELAVEGPGAPSLDELARRLQDGGGPGRARITARVEGERLVVEARGAAAHAMHPEKGINAVAGLLNALARALGPALPRSSDLAFLAGAGARTDGSGFGIAVADQVSGPLTVNLGLIRLVGEHPLQGAASLAAGAPGEAAAPEASRGAGRAGTAGAILYADCNVRYPVTASAQDLARRVVAALAGTGWRFESREDMPPHHVPDDSEIVRRLLAVYREEAGDPAARPLAIGGGTYARVLRNGVAFGPLFPGQRELAHEPDEYWSIDDLVRCVRIYARALYRLMFAPR

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Crispr_ID: NZ_CP048407_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_6

1943082-1943177

Orphan

Consensus_repeat	Method
CCGCCCAAGCCGGCGGGTCCCGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048407_6

>merge|NZ_CP048407|6|1943082-1943177|CRISPRCasFinder
CCGCCCAAGCCGGCGGGTCCCGCAAGACCGACGGCCCGCGGGATGTGCTCGGCGCACCGCTGGCGGCAGATCCGCCCAGGCCGGCGGGTCCCGCAA

>NZ_CP048407|6|6|1943082-1943177|CRISPRCasFinder
CCGCCCAAGCCGGCGGGTCCCGCAA	GACCGACGGCCCGCGGGATGTGCTCGGCGCACCGCTGGCGGCAGAT
CCGCCCAGGCCGGCGGGTCCCGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116900292.1\|1943190_1944387_-\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|260125
NZ_CP048407.1\|WP_116900346.1\|1954747_1955365_+\|bifunctional-nicotinamidase/pyrazinamidase	unknown	unknown	gnl\|CDD\|238493
NZ_CP048407.1\|WP_116900300.1\|1930207_1931155_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP048407.1\|WP_116900295.1\|1933722_1935147_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP048407.1\|WP_116900297.1\|1932409_1932796_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900291.1\|1945159_1947346_+\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|236321
NZ_CP048407.1\|WP_158556034.1\|1948776_1949676_-\|sortase	unknown	unknown	gnl\|CDD\|320679
NZ_CP048407.1\|WP_116900294.1\|1936443_1941081_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|274729
NZ_CP048407.1\|WP_040826887.1\|1955544_1956216_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP048407.1\|WP_116900299.1\|1931360_1932116_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|378937
NZ_CP048407.1\|WP_116900285.1\|1956940_1958728_-\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_CP048407.1\|WP_116900293.1\|1941073_1942903_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|224091
NZ_CP048407.1\|WP_116900301.1\|1928980_1929988_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP048407.1\|WP_164581372.1\|1947413_1948625_+\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NZ_CP048407.1\|WP_116900296.1\|1933091_1933511_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367245
NZ_CP048407.1\|WP_116900298.1\|1932296_1932413_+\|histidine-kinase	unknown	unknown	unknown
NZ_CP048407.1\|WP_116900287.1\|1951485_1954014_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_CP048407.1\|WP_116900288.1\|1949717_1951181_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NZ_CP048407.1\|WP_006903512.1\|1935412_1936249_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NZ_CP048407.1\|WP_116900286.1\|1956212_1956785_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116900292.1\|1943190_1944387_-\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl\|CDD\|260125	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase. Human UBIAD1 is an enzyme involved in the synthesis of MK-4. Menaquinones (MKs, also called bacterial forms) are one of the two forms of natural vitamin K, the other being the plant form, phylloquinone (PK). All forms of vitamin K have a 2-methyl-1,4-naphthoquinone (menadione; K3) ring structure in common. At the 3-position of the ring, PK has a phytyl side chain while MKs have several repeating prenyl units. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	2.81142e-77
NZ_CP048407.1\|WP_116900346.1\|1954747_1955365_+\|bifunctional-nicotinamidase/pyrazinamidase	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	8.53881e-81
NZ_CP048407.1\|WP_116900300.1\|1930207_1931155_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.6337e-100
NZ_CP048407.1\|WP_116900295.1\|1933722_1935147_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP048407.1\|WP_116900285.1\|1956940_1958728_-\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	2.35509e-135
NZ_CP048407.1\|WP_116900291.1\|1945159_1947346_+\|methylenetetrahydrofolate-reductase	gnl\|CDD\|236321	PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed.	8.41238e-109
NZ_CP048407.1\|WP_158556034.1\|1948776_1949676_-\|sortase	gnl\|CDD\|320679	cd05830, Sortase_E, Sortase domain found in the class E family of sortases. Class E sortases are membrane-bound cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Actinobacteria). Genes encoding class A and E sortases are never found in the same organism, and similar to class A sortases, the genes encoding class E sortases are not positioned adjacent to genes encoding potential protein substrates, suggesting a housekeeping sortase function of class E sortases in some high G + C Gram-positive bacteria. Similar to class A sortase, class E sortases are capable of anchoring a large number of functionally distinct surface proteins containing a cell wall sorting signal to an amino group located on the bacterial cell wall. They recognize an LAXTG sorting signal, instead of the canonical LPXTG motif processed by class A sortases. The prototypical class E sortase from Corynebacterium diphtheria (named Cd-SrtF) is a non-polymerization sortase that is not required for pilus polymerization, and proceeds to complete the assembly process by anchoring the polymer to the cell wall peptidoglycan. Moreover, in Streptomyces coelicolor, one or both of Staphylococcus aureus SrtA homologs may function as class E sortase responsible for the cell wall anchoring of the long chaplin proteins (ChpA-C) containing an LAXTG sorting signal, which presumably mediate aerial hyphae formation. The family also includes some class E sortase homologs from Gram-negative and Archaebacterial species, but the functions of these enzymes are unknown.	7.28892e-42
NZ_CP048407.1\|WP_116900294.1\|1936443_1941081_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	2.77949e-92
NZ_CP048407.1\|WP_040826887.1\|1955544_1956216_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.08388e-89
NZ_CP048407.1\|WP_116900299.1\|1931360_1932116_+\|ABC-transporter-permease-subunit	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.57337e-17
NZ_CP048407.1\|WP_116900293.1\|1941073_1942903_-\|isochorismate-synthase	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	5.92986e-104
NZ_CP048407.1\|WP_116900301.1\|1928980_1929988_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.49021e-46
NZ_CP048407.1\|WP_116900296.1\|1933091_1933511_-\|hypothetical-protein	gnl\|CDD\|367245	pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold.	2.25403e-12
NZ_CP048407.1\|WP_164581372.1\|1947413_1948625_+\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	2.72748e-163
NZ_CP048407.1\|WP_116900287.1\|1951485_1954014_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_CP048407.1\|WP_116900288.1\|1949717_1951181_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	1.51217e-06
NZ_CP048407.1\|WP_006903512.1\|1935412_1936249_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NZ_CP048407.1\|WP_116900286.1\|1956212_1956785_+\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	6.35998e-49

>NZ_CP048407.1|WP_116900293.1|1941073_1942903_-|isochorismate-synthase
MTSLAREVPHLASLTGPVSRDLDRLHARARDQARRGRRPSVVSFTVAAEDLDPIALFEGAAILTRERALWSAPGGTMAMVALGAAAVLEAGPGVAAESEAAGAGPAGPLAAIAPALASAWQALCEGALIDAPHGVWGTGPVVVGGFAFDPQEPADLLWAGFPAARFVLPELLVTRTGGETWLTFNRVVVPGVGTEAGTAAGTSAADGAGEGAGWIFPGGIRLHVPAAATTAAGERGRRWLSLLAVASTAGRRPGSRGTDPREPAGAPGAGGPGKAAAAAGGPAGSRPAGAGGLGAEPGAPGPRCEAGGRGGPGSSARPSGAGGAPSLIGARAVPGREAWEAMVRAALDAIGRGELAKVVLARRLHLRAGAAFDPGAALRRLQAGYPECFVFAVARDRTVFLGATPERLVRLRDRRVETAAVAGSTARGATPEADAALARELLASPKEREEHALVVRMLRDTLGPVCRVLDVPAEPRLLQLQNVQHLYTPITGVVDGATVPELVARLHPTPALGGWPRERALEFIRRWEGRTRGWYAAPLGWFDHRGEGEMAVAIRSGVVRGTEAWLFAGCGVVAGSDPGREWQETALKLQPLAAALGVEPGATEVDHGG
>NZ_CP048407.1|WP_116900294.1|1936443_1941081_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MAEPVGAGPQGKREEPGAGRAGAAGGPAAGGAVAGASSVTEDAGNGSAGPAGPAGAAGPAGLAGADAPAGPGGSAGPSGLPGTIAPAVVAGPAAPPGPDLGRTNLAWALALMDGLVSAGVEHVVVCPGSRSTPLALAAARHPGVRLWVQLDERSAAFFALGLGRATGRPAAVVATSGTAPANFYPAVIEARYGRVPLVVLSADRPHELREFGASQTVDQIHLYGRHAKWFADLPLPEDDPAARAYVTRAAVRAVTEALAAPAGPVHLNVPFREPLVPEAPAASRPAGAGASSHPAAVGAAAAADAVGMVQGLAAVERGLAGGEPVGQGPPDREAVEAHLAGEGRLAGGPAQPVSGGPWQAPLTSAQPRPARRQPVEPRLGAAALTEAQAHELFGLLAGARRGLIVCGPLSPVLAVAPGVGPAAGGPGGAPAFSAEGPPLAVAVTRLARRLGLPVLADPLSGVRCGPHASAEAYGAQQAARQAGPAAGTRQGGPAAWGQQGGAAPAAQQGEAVAAGPDAAAAAGPGGGVAGGAAGNEAAGTAPGLAREAQATGEGVAQDPAEGPVAGSVQGSAQGGMQGPIPGPIIDAYDAFLRVPALASALAPDVVLRLGGMPVSKPLAQFLERHPRAVQVVIDEGGWPDPSHGAALVVRADPVQACWQLAQLAAAYCGDEPAPAGEAQPGGGQGGPGAVADTQREGAPGSETRQTAGTGVASRAGGPPAHQDEGALPGQGTAGSSTGFSSGSVPAGSVGAGGPVDPVPAPGDASRPPGAGSWLGLWQRLNHIARQAMARQLARWDEPAEPRVVAELARLLPAGSLLFAGNSMPIRDVDTFFPAGPRPVRILANRGAAGIDGVVSTAAGVAAAGEGPVVLLIGDLSFYHDLNGLWAAARYGLPLVTVVVNNDGGGIFSFLAQSRLDPAEFEPLWGTPHGLDFRHAAALYGIPYRRVDTWDAFRAAVQEALGRAPGGGGTGLPGAAGAPGERTGPADGNTPGPSIVEIRTNRQRNVDHHRQIWQAVAAALAEAGLAGEPAEAATARALEPDGHGAAAISARPAAEGRGRPDQEAPVPRPPDLLAAQAAESSTGQAAGPGTGQAGESDGGKAGEHSAGGKAGEPGAGGRAGEHGAGGQARGPGAGRTGQEPGAAPPAGGARAGFVRVRGARYYVEAEGWPLHQSGALAAAASRPGGEPATREPGRETATLPLDGDAAPSRPGDPRRPSPSGSGGPATPAVAGLAAGGGPVGAPGSAGGPSGLPEAALRAGGAPRLSELAPRSGGASRHLEPAPLLLGGDTSMLPEPALLLHGFTGSTATWAGVWSQLAAAGPLLAVDLLGHGRSAAPAGPDRYHMEEQVADLVALLDRLGIGRVHLVGYSMGGRVALSLAAAAPERVASVVLESSSPGLAGPGEREARRRSDEALARRIEEEGVGAFTRAWEELPLFAGLKDLDPAARASVRATRLAQRPRGLAGSLRGMGAGVQTPLWDRLADLPMPVLCLAGAADAKYAALARTMAGRIPRGRAVIVPGAGHTVHLEEPAAFVREVRAFWREHRF
>NZ_CP048407.1|WP_006903512.1|1935412_1936249_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MATDVQLPRWIKVKDYEDIIYEKADGEGIAKITINRPHVLNAFRPETVMEMQDAFTDARNDPRIGVVLLTGAGGNFCSGGDQKVRGHGGYVDEGGMARLNVLDLQRQIRTLPKPVIALVAGYAIGGGHVLHVVCDLTIAADNARFGQAGPRVGSFDGGYGAGLLARIVGHKKAREIWYLCRQYTAQEALEMGLVNAVVPADQLEAEGVKWAREILDKSPIAIRMLKAAFNADTDGLAGLQQLAGDATLIYYLTDEAKEGQRAFLEKRKPDWSKFPRFP
>NZ_CP048407.1|WP_116900295.1|1933722_1935147_-|cation:dicarboxylase-symporter-family-transporter
MAWLPVALNVAGLFVLIAVLYGLKGRGLSFSSRVFAGLGLGVAYGLVLHTAYQAQPGVIPASVEWFNLVGTGYVKLLQMVTIPLVFVAIVSAFTRMELADNTGRLALTVVAILVATTAIAAVLGIGSVGLFGLDASQFHQGQAEAQRIQQLEQTFGELQQMSAPERLLELLPANPFLDFTGQRRASTIAVVIFAAFVGSAYLGLRHRDPQAAETFAGIVRALEGVVMGMVRQVIRLTPYGILAIMTRVAATSDYTAIWQLGKFVVASYAALAAMFLLHLLFLGAAGLSPAAYVRKALPVLTFAFSSRSSAATLPLNVRTQVEELGVPQGIANLAGSLGLSIGQNGCAGVYPAMLAVMAAPLVGIDPWTPGFLLSVVGVVAISSFGVAGVGGGATFASLLVLSMLNLPVGLAGLLISVEPLIDMGRTALNVSGAMTAGILTSRMAGRLDVDVYRGRGATGAGAGTGEEAGVQVGA
>NZ_CP048407.1|WP_116900296.1|1933091_1933511_-|hypothetical-protein
MSIQVGPGRIRPAAAGSRQEPAAAVPFPPGAGQAEDERNRGRMGEGAPAPGRRPPSRARVTARGPAPGLRLRGPERRPACPCRLQGAGATLSHHHGTGRDFAPFFAREHGPGHVAALRALKAHLDPAGVLNPGVFFPAG
>NZ_CP048407.1|WP_116900297.1|1932409_1932796_-|hypothetical-protein
MNPVDWWKNRRLATAAAAVTVLLLLGAVWMPLSVPQVPPVLAPDQARFAEHALQMAPAAFDAPLARPLIWRVAVRDVQPLSDPAPACDDVPGLAPYRATVDALGPFGIVVARAKVECGTASTRWMVGG
>NZ_CP048407.1|WP_116900298.1|1932296_1932413_+|histidine-kinase
MPTLWPWVITWGLILASGLALWAFVRRAHYQRNRRDKI
>NZ_CP048407.1|WP_116900299.1|1931360_1932116_+|ABC-transporter-permease-subunit
MAILHAELLKWKRSWVLWAALLAAAAAPALNGLIFWSTKRLRAAAGQVIDIPWDGFFAQAASFAHLLVYPLLFGFVVTYAVAREFQEGAATNLFALPASRTALLLAKLGAAALILAVPVVAAVPMAVVAGTPVIGRPPSWAEVADGLQVHLIAGLAQFLLTPLILWLATLTRGYVVPVAAAGSFVVANVVFSMAPGDRFLWWPTALPAWTAQATWLPDLFVHLPAWWVELPPLFVVFVALAAVTVARRDVM
>NZ_CP048407.1|WP_116900300.1|1930207_1931155_+|ABC-transporter-ATP-binding-protein
MDSTTPAVQLRGVGKRYGHRWAVRDLDMAVRSGEVYALLGRNGAGKTTTLRMILGLARRSTGEIELFGRRLEEWSAEVYRRVGATVETPGFYGNLTARENLLHNLMILGVPEPRRIDEVLELVGLRQAADRRVREFSLGMRQRLGIARALLHEPRLLILDEPTNGLDPAGIREVRELIRELAAERRMAVLLSSHILAEVEQVADRVGILHKGRLVEEVSMGELRDRGRTYLVIETREPEAAVRLLEERLAVRRYTVLPGGTLRVYEHVDRPEEVVRALVEQGLQVAHVSVQRESLEDHFLRATAETTTHPPAGSN
>NZ_CP048407.1|WP_116900301.1|1928980_1929988_+|HAMP-domain-containing-histidine-kinase
MSSHGFGLAAGPWPVAALLALAVALLALAACWGLRRELGRLARAVDEARSGDVLTRFHSRAPGLKALAAAFNQILRRLHDLEAERRRDEQRRRQLLAALSHDLRTPLTAVLGYLEAVAGGHLDPVTEQQYLATACRKGRELWETLDRIFEWARLDLEVADLPSPRINLAERLRQVLIEFYPAFHQQGVALRPELPEEAWVRCHPDLVDRVTRNLVDNALRHARGITCLAVTLRPAGRTWELVVADDGEPVAADVLANLFVPFHRRPGSPGAGLGLAISRQLARAWGGDLRACPRRPRGLAFIVSWPRSEPVAASRAAQAAATPVGGRPGEGETRR
>NZ_CP048407.1|WP_116900292.1|1943190_1944387_-|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MHQADEHGPAMARAAAASAPAPAAGSGGRAEAAATPAAAGSERSDGGEPATGLRAGSPGARPPKIGRDGGAGRLRSGGAGTAAAAAGAEAPTARSWRLLARAWFQASRPHLKPVTIIPVLVGILVAGGEGHFDPWLALLTMLGSLAIHAGTDMANDYFDYIMYEGDAPFTGGSGVIQAGWLSPDSLRRGAWATFGFGALVGGYLAARTGWPALAFGLLGIASGLFYTAPPIRYGYRGFGEVMVGLNMGAVLVLGSYYVQARTLSLEALVASLPLVSLVALILYAESIHDIEEDRATGKMTVAARLGETRALRLYFGWVAATAVLVVAGVAAGRLPALVLATLVPAARCLRQAPLFLARPYRHQDLYRLGRLALGLYKAAGVSLVAGYGWWWLRSALWS
>NZ_CP048407.1|WP_116900291.1|1945159_1947346_+|methylenetetrahydrofolate-reductase
MPFAPDPAPRTLAAVSPGPVLPALADGDPSWTLAARPVQPSPAGNSPSGGGPAPSQPGTGPHGWPRAAAREEEEPAPGTALLPLTEPAAVEGVHLAAIRAGARLVRTATRWASPWWLPSTSPERIEEVNLWAAKLARSARELAGRPCLVAGFLGPLPATAAAGGSAPPEAVLEGYRRQVAGLLAGGVDLFWVEARHPQEAGLALKAVREAARLPVGVLLVGEGEPPVALPSPWLEAFHAAGWPDALGVAAGGGPAWAARWLAAVRRAGWSGPLWVTLGQLENKPGPAARGLAAHKPATQDTGGWDAWDALRLLGAGWVGGTGPWQPADLEALAARIQAVHLEPEGPAPALPVLGPLNRTGSGSGPGEPDAGELNAGGPAASRPAAALWTRSRPAGAGSLPGDTASGKGGAAGHCSPDPLREKLGRRFVISVELDPPRGPVANKFLADARTVAAAGADAVNVGDSPMARPRMAAWAGALLARSAGIDAIMHCTTRDRNLMALQADLLAAHALGVRNVLALTGDHPRLGSSGASPVYDVDSIGLLEVLAALRRGEDPRGNALGAPADFTVACALSPSADDLDRELERFRRKLAVGVVDFVMTQPLYELEPLERVLDRLGGCPVPIVMGVMPLHSGRHAHYLHHQVPGISIPARIREALDRAGERGLEVGLQLAEEVVEAARPYIAGVYVVVSYGKAEPVAEFVRRLRARLDGPLPAAAARSPEEVRHHAG
>NZ_CP048407.1|WP_164581372.1|1947413_1948625_+|PLP-dependent-transferase
MHPATRVVHAGVRRDPRTGSVAVPIYQTATYEHPGPGQTTGWDYSRLHNPTREAFEEAVNGLEDGFAALAFASGMAAVTAVLHLFRPGDHLVVTEDLYGHTWRVLDELFRHLGIGYSLADTTDAAAVAEALTPATRAVLVESPTNPLMRVADLDGLAALCRRQRLWLLVDSTLFTPLFQRPLTRGADVVIHSASKYLAGHNDLVAGVAVAGTPALADELASLRTITGGILGPHDAWLAVRGLKTLALRMAQAQQNALTLAHWLEAHPAVAAVYYPGLPSSPFFRRCRQQAEGFGAMLSFRLRDTGRAGDVLRRLQLILFAESFGGVESLITHPASTTHREMPAALRERLGIDAGLLRLSVGIEAADDLAADLEQALQGPSALSLAEARARAEAILAGRARQEA
>NZ_CP048407.1|WP_158556034.1|1948776_1949676_-|sortase
MAVRFTRRWWGTLVGWVLVLVGVALATAPALQWVYGAGWQAHLQAQLARPGPDGPGGDPGEPAPPGVGPAGRIWASPAADRLLELLGRWLGGLERLLGWLRELLTEAGVPEGWLAWWWEDPGLAATATVPEPGELRGGERLQAAAGRGAGGARGGAAGGREAASREAGQPVARLVIPRAGVDAVVLYGTSRVVLARGPGIYQEAELPGPQARVAIAAHRTTYGAWFRHIDRLQPGDALALWYQGRWYRYTARRVFATHRNDWRAVLEGPRPGLILTTCHPPGSSRQRLVVYAELTGVTP
>NZ_CP048407.1|WP_116900288.1|1949717_1951181_-|carboxypeptidase-regulatory-like-domain-containing-protein
MRQAEQASRWRRPVAWVTSLALVVATGGGVLLGGGPAAEAGGPRLPGSEKVQEATQGVLATGGGTSRDASAAAARLVTATTGMLSGSLGVVTGTAAGTAGTIAATAGEAAGQLAGALTGGAGGEAVEGTVDQVGQTAGGVAGVLAGDQLGSLVEGVAGTVEGAAGTLTGAILDTAGDLLSTGGGGNQDGNTGSGPSLNLQIGDQNVEVSLDGGLRISPDPTGGLLSGSGGGNGDQGGSGGSGGGPAGEEGDGPVRVDLPTGTITGLVCDALSGLPIPGATVSVGEERGAALGIARTDLGGNFSLDIGRTSSGRLTITASAGGYAVTTSGPITLGPDGTATVKVCLERASTGPQNPPGDQPGEDGDGGSPPGGPGGGTPGPGTEPGTGGSGGGSTGSDPGGSGGTGDERAGWGSLPFTGGNGLAFLLAGSLAAGAGLAVRRWALKGGARGVRAAFGTVTDAGAAGPSPAGTAAGAPAPPKAGEPAPSC
>NZ_CP048407.1|WP_116900287.1|1951485_1954014_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MAVATNLGFPRIGAGRELKQALEAYWDGKISADSLLATAAALRRRHWELQRAAGIDVVPVGDFSLYDHVLDTACMVGAVPARYGWAPSPGAGASTPLAPCGDAAGAGRSTPAAGLGAEAGPGTAAAAEVPLDVYFAMARGTPGRGVPALEMTKWFDTNYHYIVPELEPGQAFHLASRKVVEEFREARTLGFEPRPVLLGPVSFLLLAKLRSPAEAGAAGRSPEASRSEAEGLGSRTAGSSGGEGAAGPRLALLDGLLPVYGQVLRELAAAGATWVQLDEPFLALDLDEPARAAFRRAYATLAQAAPGLRLFLATYFEGLRDNLELALSLPVQALHLDLVRDPGQLEQVLAAGVPPTLHLSLGVVDGRNVWRADLEAALALLERARDALGAGRLFVAPSCSLLHVPIDLNLETDLDPEIKGWLAFAKQKLEEVAVLTRALNQGRQAVAGALAASRAAVEARRRSPRRTRPEVQERLARLNPDETRRPSRAPQRRPLQRERLGLPLLPTTTIGSFPQTPEVRRLRARWRRGEIDTATYEEGIRAEIRRVIRLQEELGLDVLVHGEAERNDMVEYFAEQLEGFAFTRHGWVQSYGSRCVKPPILYGDVARPGPMTVRWITYAQSLTERPVKGMLTGPVTILQWSFVRDDQPREVTCRQIALAIRDEVQDLEAAGIRVIQIDEPAFREAMPLRQADRPAYLAWATECFRLVTGGVREETQIHTHMCYSEFNDILDAIAALDADVILIEASRSGMELLDAFVQHRYPSDIGPGVYDIHSPRVPPVDEIKALLRKAAAVLDPAQLWVNPDCGLKTRRYEEVEPALRHMVQAARELREEWAPAPAAGGR
>NZ_CP048407.1|WP_116900346.1|1954747_1955365_+|bifunctional-nicotinamidase/pyrazinamidase
MTPEAAAQDPEAALVVVDVQNDFCPGGALAVPQGDQVVPVLNRWIAAFHAAGRPVVFTQDWHPAGHVSFREKGGPWPVHCVQGSPGAAFHPELEVRGTVFRKGFDPDREAYSGFDGALAAGEAGVRPEVTLAGWLRQQGVRHLYVGGLATDYCVRATVLDGLREGFRVTVLVPAVRAVDVTPGDGERALAEMEARGAVLAAGEAR
>NZ_CP048407.1|WP_040826887.1|1955544_1956216_+|response-regulator-transcription-factor
MLVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDTDGFTLCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEGRRQQIGPIVIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVWGEEAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLNSPVAGL
>NZ_CP048407.1|WP_116900286.1|1956212_1956785_+|peroxiredoxin
MSRGAGPGPVQRWREAWLRRRMPRPGQEAPDFTLPLAGTGDESLRLRDLRGRPLVLLFFPFAFSPGCCNEIEDFTARCPDFASRGAQVVGISTDSPYALRAWADRYQVPFPLASDYNRRVIRRYGVAISRWGLGDFADRAVFVLDERGVVRWVWRAPDLGYLPDPDQVLAHLPDPPGGRPGPAGTGRGRC
>NZ_CP048407.1|WP_116900285.1|1956940_1958728_-|glycerol-3-phosphate-dehydrogenase/oxidase
MNRQQALAQLQRETFDLLIIGGGITGSGVAREAAHRGLRVAVVEARDFAAGTSSRSTKLIHGGLRYLKERDFRLVHEAVVERMRLLRLAPHLVRPEWFVFPVYRGDPDPLWQLRIGLWLYDRYAGRSLGTLRHRILSPARVQQEEPLLRQEGLVGAGMYVDAVTDDARLTATVARQAVAAGAVVVNYAEVTGFVKDAGGQVVGVRVRDLLAGGGPGAGTAAAGTPEAAGAEVAPAAGQGATPGQGTAAAGPAVQAAGQADAGGAAGQAGAGGDEFVIRARRILNATGPWADRVRQLDDPGSPRLLRLTKGIHIAFTRDRLPIRHAVTMRGPDGRIMFAVPRGAFAYAGTTDTVYQDDPARPRPEAADVRYVLDALNRTFPATRLGPDDVISAWAGLRPLIDPGDTRDPSAISRDYKLYTSPSGLVTVAGGKLTAYKAMARNIVDQVFPETQGAPVDEEPLPGGAAVPAEAELRQKAAQTGLPVEELQWLARHYGDEIVRVLGYLRPEDLQAGPRAARVRAAARYAAAEEMAQTLADALWRRVPEALWSTDNGRGVAADAAAAMGEILGWDEERRDGEVAAYLSQVQAMHAWRESF

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Crispr_ID: NZ_CP048407_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_7

2464923-2464993

Orphan

Consensus_repeat	Method
CGGTGGCACCGGGTGCGGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048407_7

>merge|NZ_CP048407|7|2464923-2464993|CRISPRCasFinder
CGGTGGCACCGGGTGCGGTCCCCAAGGGTGCCTCGAGCCTAGGCGGCTCGGTGGCACCGGGTGAGGTCCCC

>NZ_CP048407|7|7|2464923-2464993|CRISPRCasFinder
CGGTGGCACCGGGTGCGGTCCCC	AAGGGTGCCTCGAGCCTAGGCGGCT
CGGTGGCACCGGGTGAGGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116899966.1\|2454068_2454899_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116899865.1\|2477499_2477706_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369304
NZ_CP048407.1\|WP_116899864.1\|2478085_2478880_+\|2-phosphosulfolactate-phosphatase	unknown	unknown	gnl\|CDD\|377205
NZ_CP048407.1\|WP_116899908.1\|2455699_2456467_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|280792
NZ_CP048407.1\|WP_006903083.1\|2456834_2457155_-\|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl\|CDD\|365990
NZ_CP048407.1\|WP_116899901.1\|2470818_2471784_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP048407.1\|WP_116899964.1\|2466365_2468582_+\|peptidase-M6	unknown	unknown	gnl\|CDD\|368494
NZ_CP048407.1\|WP_147308087.1\|2469391_2470783_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226122
NZ_CP048407.1\|WP_116899905.1\|2461171_2461696_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP048407.1\|WP_116899862.1\|2480033_2482376_-\|heme-lyase-CcmF/NrfE-family-subunit	unknown	unknown	gnl\|CDD\|224061
NZ_CP048407.1\|WP_116899866.1\|2476325_2477240_+\|TIGR00269-family-protein	unknown	unknown	gnl\|CDD\|238951
NZ_CP048407.1\|WP_116899867.1\|2476079_2476280_+\|thiamine-biosynthesis-protein-ThiS	unknown	unknown	unknown
NZ_CP048407.1\|WP_116899907.1\|2457527_2457845_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378570
NZ_CP048407.1\|WP_116899868.1\|2474294_2475995_-\|reverse-transcriptase-like-protein	unknown	unknown	gnl\|CDD\|260011
NZ_CP048407.1\|WP_116899863.1\|2479059_2479959_-\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214
NZ_CP048407.1\|WP_116899965.1\|2458341_2459253_+\|arginase	unknown	unknown	gnl\|CDD\|212515
NZ_CP048407.1\|WP_006903078.1\|2459488_2459734_+\|SelT/SelW/SelH-family-protein	unknown	unknown	gnl\|CDD\|378415
NZ_CP048407.1\|WP_116899906.1\|2459826_2461173_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP048407.1\|WP_116899909.1\|2455082_2455523_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116899904.1\|2461745_2462222_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116899865.1\|2477499_2477706_+\|hypothetical-protein	gnl\|CDD\|369304	pfam07295, DUF1451, Zinc-ribbon containing domain. This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.	3.2603e-14
NZ_CP048407.1\|WP_116899864.1\|2478085_2478880_+\|2-phosphosulfolactate-phosphatase	gnl\|CDD\|377205	pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase. Thought to catalyze 2-phosphosulpholactate = sulpholactate + phosphate. Probable magnesium cofactor. Involved in the second step of coenzyme M biosynthesis. Inhibited by vanadate in Methanococcus jannaschii. Also known as the ComB family.	5.06681e-78
NZ_CP048407.1\|WP_116899908.1\|2455699_2456467_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	1.37672e-34
NZ_CP048407.1\|WP_006903083.1\|2456834_2457155_-\|alpha/beta-type-small-acid-soluble-spore-protein	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	1.53219e-30
NZ_CP048407.1\|WP_116899901.1\|2470818_2471784_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	5.0554e-16
NZ_CP048407.1\|WP_116899964.1\|2466365_2468582_+\|peptidase-M6	gnl\|CDD\|368494	pfam05547, Peptidase_M6, Immune inhibitor A peptidase M6. The insect pathogenic Gram-positive Bacillus thuringiensis secretes immune inhibitor A, a metallopeptidase, which specifically cleaves host antibacterial proteins. A homolog of immune inhibitor A, PrtV, has been identified in the Gram-negative human pathogen Vibrio cholerae.	2.20761e-20
NZ_CP048407.1\|WP_116899868.1\|2474294_2475995_-\|reverse-transcriptase-like-protein	gnl\|CDD\|260011	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD) residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Most archaeal genomes contain only type 2 RNase H (RNase HII); however, a few contain RNase HI as well. Although archaeal RNase HI sequences conserve the DEDD active-site motif, they lack other common features important for catalytic function, such as the basic protrusion region. Archaeal RNase HI homologs are more closely related to retroviral RNase HI than bacterial and eukaryotic type I RNase H in enzymatic properties.	1.05562e-60
NZ_CP048407.1\|WP_116899905.1\|2461171_2461696_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	7.09428e-51
NZ_CP048407.1\|WP_116899862.1\|2480033_2482376_-\|heme-lyase-CcmF/NrfE-family-subunit	gnl\|CDD\|224061	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].	1.30779e-149
NZ_CP048407.1\|WP_116899866.1\|2476325_2477240_+\|TIGR00269-family-protein	gnl\|CDD\|238951	cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.	8.54768e-65
NZ_CP048407.1\|WP_116899907.1\|2457527_2457845_-\|hypothetical-protein	gnl\|CDD\|378570	pfam11146, DUF2905, Protein of unknown function (DUF2905). This is a family of bacterial proteins conserved of unknown function.	0.00368619
NZ_CP048407.1\|WP_147308087.1\|2469391_2470783_+\|acyltransferase-family-protein	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	7.71617e-14
NZ_CP048407.1\|WP_116899863.1\|2479059_2479959_-\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	4.56553e-92
NZ_CP048407.1\|WP_116899965.1\|2458341_2459253_+\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	3.24366e-142
NZ_CP048407.1\|WP_006903078.1\|2459488_2459734_+\|SelT/SelW/SelH-family-protein	gnl\|CDD\|378415	pfam10262, Rdx, Rdx family. This entry is an approximately 100 residue region of selenoprotein-T, conserved from plants to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins, including selenoprotein T. However, despite its binding to UGTR and that its mRNA is up-regulated in extended asphyxia, the function of the protein and hence of this region of it is unknown. Selenoprotein W contains selenium as selenocysteine in the primary protein structure and levels of this selenoprotein are affected by selenium.	4.41305e-25
NZ_CP048407.1\|WP_116899906.1\|2459826_2461173_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.44309e-122

>NZ_CP048407.1|WP_116899904.1|2461745_2462222_-|hypothetical-protein
MSFVVAVILRLVAWVVLWLGGLAATRAVVEPAARQGAEAFPQLAWPALALALLGAAGAYGIVAAGWGRWMDGRSFWLRLPLALLWAGGAALLVLAAVSALARVEPLTAGRVTAPVLLLAVLGSRLLWVAGLLAALAGSTLGARPAERRRRLGPGRLGL
>NZ_CP048407.1|WP_116899905.1|2461171_2461696_+|signal-peptidase-I
MVRFRALGSVLMELLQTLALSLLLALVIRTFVAESFVVQGHSMEPTLHHGERVLVLKLGARWRQPRPGEIVVFRPLQQPGGEYIKRVVAGPGSTVAMEDGRVIRDGTVIDEPYVVYGDRSDLPPVEVPPGTVFVLGDNRPSSYDSRSFGPVPLDRLDGRAVLVFWPLWRVRWLH
>NZ_CP048407.1|WP_116899906.1|2459826_2461173_-|A/G-specific-adenine-glycosylase
MNNAPSQGPDPAEIRSRLIHWYDAHCRDLPWRRTRDPYAVLVSEIMLQQTRVDTALPYYLRFLQRFPSACHLAAAPEEEVLKLWQGLGYYRRARQLHRAARVLVERYGGRVPPDFEAIRSLPGVGDYTAGAVCSIAFDLPVPAVDGNAQRVLARLFGVDEPADRAAGRRRLDELARRLVEGPRPGALNQAVMELGSTVCTPRKPRCDRCPLAGLCVAGRSGQPEAWPVRQRAVRWAEEDVVVVGCVRGDQVAVIRRPEGGLLGGLWALPYALRQEGETWLQARDRLGAALAAELGEPLRWYPDTLQGRWDFSHRRWHWRLYLASSGGGPAPDRAAGAGAAAPPHGAALPGHAGQVAETPGAWASGPVRWVDLGHLDSLPMASLDRRLLEQAVQVLAMLPQGQVPGLQGQVTGLQEQAPGQRSRPEPLPGRGRTGPGGAGEAAGAAGQE
>NZ_CP048407.1|WP_006903078.1|2459488_2459734_+|SelT/SelW/SelH-family-protein
MSDRIEVRIEYCTSUGYLPRAARVAEEILEAYPDRVASLTLVPSSGGRFIVTAGGREVYNKAETGRFPEEGEVRRRIGELW
>NZ_CP048407.1|WP_116899965.1|2458341_2459253_+|arginase
MDALEVGILGVPMDLGSSRRGTDMGPSAIRYARLTEALRQVGRQVRDLGNLEVPVAESLDAANPRLKHIEAIEPVWRLLAQRVARMVTEGRVPLVLGGDHSLAVGSVGGFLSAGAGDLGVLWFDAHADFNDAATTPSGNVHGMPVACIVGKGDPELLAHTRWLPRYLPPDRLVMIGLRDVDPGEREKLRQTGIVTYTMQQIDELGIAEVTRRALQHLQGRGVRRLYVSFDVDVVDPDVAPGVGTPVVGGLTYRESHLAMEIVAESRLLAGMEVVEVNPIRDVHNRTAEVAVALIASAFGKRIL
>NZ_CP048407.1|WP_116899907.1|2457527_2457845_-|hypothetical-protein
MENTGVMIVLGLLVVGGLAFWALNRAGTRAGLPGDIPSRPRPAEGRPVNPRKPTVGGDTFTAADNVLTGGDEPGEPGEPGEGRQQEARTGSRENGPAAEGSRQGD
>NZ_CP048407.1|WP_006903083.1|2456834_2457155_-|alpha/beta-type-small-acid-soluble-spore-protein
MARGQQSNRHLVPGASRALDQFKYEVARELGIQIPPDGYWGDMPTRLTGAVGGHMVRRMIALAEQQLAQRGTLPPADATRGAAAPAFGTANWAAGRADAFQPAPRV
>NZ_CP048407.1|WP_116899908.1|2455699_2456467_+|cytochrome-c-biogenesis-protein-CcdA
MGPETQVTAGIALLAGMAYFFSPCVWPLYPAYLALLGGTAGSTQGTGRPGPATAPGALRHPSSRRLAGAAGFVLGLGLVFMATGASLSAAGALLIAYKSVLEKVAGVLIVFFGLQMLGVIRLQWLQREWRPAWAQAPAAGAGGFWPGTLMGAAFGVGWTPCVGPVLGSILLLASSTGTVAQGMLLLAAFTAGFAVPFFTLAVLIDRLQPDRLRRGGPLLRRVEQASGVALVLLGVLVLTGQLAYIASWLWYTLQP
>NZ_CP048407.1|WP_116899909.1|2455082_2455523_+|hypothetical-protein
MENVVGRLDQPLFRQTIEELERRRVTGTAFDRLVDEAPAGQLGPRVARLREALAARFGEPRVDPEAEQPNFRFLFELSPNTSYLEVGTTDGRRVYVDFLSTYLFMRSVTPSKETCRALWLPAYVQDAIAELKRIAMEAGALDRPAA
>NZ_CP048407.1|WP_116899966.1|2454068_2454899_-|hypothetical-protein
MIRIPVTAWWFPLAGLGWGLVLYGLPLVLGLALSRLPGRGGGQPGPRGRPRSWPGGTTGGRGLAAGFFTYLLLSNWLATLGLGLEGPGWGRGLWLQAAFLAAFLIPAYAGWLRPGGRMGRRVGWTWAAALGLDGAAGAWVVRAALEAGGLAAAPAAALAAARLLLAWGLGLLLADGRRPPRRQLLAGGVVAGLPPLVTAVLPASAGLVAWSLVLRAAAAGLLLSGLAGGRLVPGARRLRGEAQWAFALAMATAMAVMFVLAQWMALPLGPGGAVLP
>NZ_CP048407.1|WP_116899964.1|2466365_2468582_+|peptidase-M6
MHRSRHRRVRRVLAMALAAAVMGTALVAWPGAGSGSHALAAGAPDASPPAAGDAAAAGSTGFTEPEPVDIGPAVRHKEFPVARKGQVVGAERGDQPGIRSASAAYDPVPGTRRTFFTLDLTQGRLVPTTFVLRGVSEHAEVWVAEDLAFPAGDPRNEMVAITGEQVAYLLNEFESNIRPKEETFFGPWDQHDGSGALLDAWGYVPDGYYTAADGKARDIILVENVKDENYYDPSYPSYVAGFYASAYEYYMDRNIVTIDAFDWAQRLGPNDAPWRRVPGTGRAHLYDGTLAHEFQHLIHDDYDSDEESWIDEGIADFAEFLVGYGHPDRHVDWYLDNPENSLTAWGDQGDRQILADYGIAYLFQLYLHDHFGGGEVIRRLVANPANGSQGVDAVLAELGHPQRFTDVYRDFQVALMAAGQARLPREYAFDSIDLTRFGSRGGINLEATTYGDGQVAGWATDVAATWTRGQARATRVQFNGDDYLPIPWSVVAAPAGGQGQALWSGTGNLLDQWLVLPLDLRGATGTVLEFDHFYDIEAAWDYGFVQVSADGGKTWTSLANENTTDVLDPQAHPRIQENVPGFTGSSGGWRHESFDLSAYDGRSLLLAFRYVTDWAAAGNDGDPANDGWFIDNVVVRASGGVVAGPFDGSSLDGFKSLGEATGQPITYLVTVVQLERNGKVQVRDFRFHNKPRQEDLNALQATLGRSNADRQLILVTHLAPGDAGTTVHYQLDVQRRER
>NZ_CP048407.1|WP_147308087.1|2469391_2470783_+|acyltransferase-family-protein
MARGLSISLVVLGHTPLPAWINGPLSTLRLPLLFFISGYLFNWDRYGTRPGQLVRQRARRLLLPYLTGGLMTYLFWQLARRAASPEAQAVPWWWPLAGWLYGSASAGWLVFNLPLWYLPAAFCGQVLFWGLLRLLARRPPLLQAAGALAAGLAGIALGRQAPLPWSLDVALAAQPFFWAGWFARQAGGTRPGRPGPRPWPQAAEAAEAEGAAGGAGGLLPGDAPTAPGRCATDHDAVPETGWKTVAPAMPAVSGGRAQAQAAGPSLLPGRLGRPGAVLLGLGLWLAALAENGAVAINTRQYGHPFWFYSGGVAACVLALHLATALARLPLACRALAYLGQHSMVVLVFHVGLAFPVLAWLLAALAGDPLLGAWGLYWLWGLGFTAALARLVQSFPRLALALEGAMPRRAGSLWPRRPELRPSAAGRPMPARAARDRESGRPGRPGGRAQPGSRPRTRWHGAAD
>NZ_CP048407.1|WP_116899901.1|2470818_2471784_-|sugar-phosphate-isomerase/epimerase
MAEPPSTPPEPAPPAPVPSPAGPARSPHPVLALPCRSLWRSRHRPEDPDRFLASLRDEARRLGRQGAGAVEFHADACVLDARYAAPGPWREAGAILAAEGLAATVHLPYVWPDLTALDQTVWEGSIASIVTALRATSPLTPLLAAVHPANYATQALVLATPADQRPGLLDELATRLVAALRRLQTEVPPATAAVLALENLEGMPWALFDSVARAAGVAVCLDVGHAVSNGDDPVQLARTLGGRIRGLHLHDAVPPAGQGTGGAAVGRAHLPLGQGSLRLPELAAALAETGFAGPVVLELETGDALEAAIEKVRAAWSTAYR
>NZ_CP048407.1|WP_116899868.1|2474294_2475995_-|reverse-transcriptase-like-protein
MTARRLGPRLEALLDMLGRVEVLADIGTDHGLLPVTAVLRGRARRAIATDLRAAPLAAARRLVEDTGTQDRIELRQGPGLLPLRPGEAGTVVISGLHGETIAAILRAGAGRLEPGTRLLLQPTRGAAALRLPALDRRTGRLWMERLWLGVAPAMAAPTTGPEVPAEAETAGPPGACGPCAPQAGPAGAGITGVAPSGQGPDDGAPARPGREGPPRCLFLDLEEERVVVEGRHAYVIIAGRVVEPPFHLPVGWPVLAITNPSGPEDAAPDERPFIWLWDAPVVEAAHRLAGLALRWGVDPGEAVGRVGPALLAHPARSLGARGAGPGAGPAQGVTGPPAAGRAGPWLACWLHELARPWRKALRANTGSTSRAVLRRSEAAAWLGFLGEVLALEAGNMAPDQDASPPAGTPAGGEGLDRTEAAAAAPWRLHTDGAARGNPGPAGIGVVLVGPDGAVAERIARFIGEATNNVAEYTALVTGLQRALERGARRLDVYSDSELMVRQLNGQYRVKNEGLKPLFEQAARLAAQFELVRFIHVPRERNREADRLANQGIDQGTGGAQGAPGPV
>NZ_CP048407.1|WP_116899867.1|2476079_2476280_+|thiamine-biosynthesis-protein-ThiS
MKVTVPIPVRKVYEIKGPKRVQEILDELGLPYESVIVIHEKRLLTPDARVPDDAEIEVRPAISGGS
>NZ_CP048407.1|WP_116899866.1|2476325_2477240_+|TIGR00269-family-protein
MKCTKCGEPAVVPIRRHNAAFCAEHFFEYFDNQVQRAIKEHRMFTKHDRILVAVSGGKDSLAVWDVLLRLGYEAHGFYIDLGIGEYSKRSTEKVRNFAAERGATLRVVSVEEEYGLGTQELARKVRRPACSACGLNKRYLFNKVALEGGYDVIVTGHNLDDEAATLLSNVLHWNTGYLARQAPVLEATAPNLVKKVKPLFRLTEREIASYCVLRGIDYIVEECPMAKGAKSIQYKHILNQLEELSPGTKAAFFFGFLERGRQHFEEEREQVEIRPCTVCGQPTTTEICAHCRMLQRAGVAVARA
>NZ_CP048407.1|WP_116899865.1|2477499_2477706_+|hypothetical-protein
MPRTGEEPGPGIYTCTRCGQTVRLDDPGDRLPPCPDCRNTEFTRAVTDPAATGVSARIPPQQDGRNRR
>NZ_CP048407.1|WP_116899864.1|2478085_2478880_+|2-phosphosulfolactate-phosphatase
MPALHVLWTAGDARQHAFEPGEAAVVFDILRATTTMTAALAAGARALCPVADRPSALALRDRLQPPPLLAGEENMQRQPGFDLGNSPLEMTPGAVAGRVLVLCTTNGTRAAAAALAAGCRKLLAASLLNRSATARYLASARPDRITLICAGTQGRFSLDDVLGAGAVLEALLREDGTRWELTDAAQAALALWQHHRHQVERTLASCDHGRQLVRQGFAADVAFAARTDTTDFAITWQPVEELPEPAGGGWFVPTYFPGNRRPSL
>NZ_CP048407.1|WP_116899863.1|2479059_2479959_-|deoxyribonuclease-IV
MDMPFDTSQAGPLVVGCHLSVAKGFPAAAAVAVQVGANALQFFPRNPRGGAQRQVSEAERAQWLERREEAGLRYTIAHIPYTVNLASPKPAAYEFARRVLREDLERCRWVGADAAVTHPGSYVEGDPADGIRRIIAAIEPVLPLLEEPGSPWLLLETMSGQGSEIGGRLEELRAILEGLGWPPRVGVCLDTCHLFAAGYDWRDPAQVGRLVEDLDRAVGWERVQALHVNDSKFPCGSRRDRHEKMGQGEIGRRGFANLLRHPRLRALPMLLETPIDGELDYAAEIRWLRELDQELAAGA
>NZ_CP048407.1|WP_116899862.1|2480033_2482376_-|heme-lyase-CcmF/NrfE-family-subunit
MAYVGHALTILALVLALALAVWAPLEGRWRWRLRWMPPARWLAAGLFVTVSGAVFILIYALFTDDFSFRYVASQSSRYMPAPYKISALWSGQEGSLLFWLWLLSGYTAAVALSARRAVPALLPYALATLGFVAAFFALQVAVVSGPFDVLPNPPADGRGMNPLLQNPWMVSHPLALYLGYVGMAVPFAFAMAALWTRNAGDAWIRVTRRWTLLAWLFLSVGILIGSRWAYTELGWGGVWAWDPVENAALMPWLLATAFIHSSLVQEKRGMLKRWNAGLVIFVFLLTIFGTFITRSGILSSVHAFVTSPTSPWFLGFLGLVLVVASYLFIDRASLLADERRPESPFSKETGFLLNNLLLAGLTFAVFWGTVLPLVTPLFGAQVSVGPPFFNWVGVPLFLAMMILMGVAPVLAWRKASWPRVRRLLALPAVGAVALGVALAVLGLRELPIVLGFAIAFFVGTATVADVIAAYAARVESTGDRSLRGLWQMLNRNPRRYGGYVVHLGVVLIMIGLTGMYGYQQVEAVGLSPGESYTFGGFTITYHGLGQRVSEGVPAVYADLSVSREGREIGRLQPERRFYPGFVETLGATPEVAMLTSFSRDLYVVLGGWEGDAAGFEFYLNPLVAWIWIGGYLVVGGTLFSLWPRPALATGGARILAELAELEYDYRSGKIAAADYARLRQGLVAAAEAVLARWSEDETRVAAEIDALAAGDGGPGDAVTGRRPGGGTPAGGPWGGGARAGGSQVGGAPVGGSQASGWPVDAAASPPSPGREGTRAPAPAP

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Crispr_ID: NZ_CP048407_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_8

2553715-2554669

Orphan

Consensus_repeat	Method
GTTTGTAGGGTGCCTATGA---GGAATCGAAAC	PILER-CR
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CRISPRCasFinder
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CRT

14 spacers

The CRISPR arrays of NZ_CP048407_8

>merge|NZ_CP048407|8|2553715-2554669|PILER-CR,CRISPRCasFinder,CRT
GTTTGTAGGGTGCCTATGAGGAATCGAAACGCCAAAAGCACATACTTGCCGTCGAACCCCTCCCCGTTTGTAGGGTGCCTATGAGGAATCGAAACCTCGATATGTGAACACTGTGGGACCCATGGCCATTGTGTTTGTAGGGTGCCTATGAGGAATCGAAACTGGCGTGGTATAATATGGGTAGTCAGGGGCGGTACGGGTTTGTAGGGTGCCTATGAGGAATCGAAACAGTTCATGAACCAGTTCACGAACCCAATCATCCTCTGTTTGTAGGGTGCCTATGAGGAATCGAAACGGCGGTACGGAATACCGTACCGCCCCTGACTACCCAGTTTGTAGGGTGCCTATGAGGAATCGAAACTTCCAGCGCCCGCCGAACTTCTTTGCGACGGGCGCCGTTTGTAGGGTGCCTATGAGGAATCGAAACCGCACAACGAAAAACCATGTTCGTCCCAGGCCAGGGTTTGTAGGGTGCCTATGAGGAATCGAAACGCCCTCCCTTGTGGCCCGGTCGCGGCCCCCGTTTCAGTTTGTAGGGTGCCTATGAGGAATCGAAACGCCCGGATGCGGTCATCGAGCGGCTTTGGTCGCACGTTTGTAGGGTGCCTATGAGGAATCGAAACGCGGCGATCAGTCCATCGACATCGACCAGGCGCGGCGTTTGTAGGGTGCCTATGAGGAATCGAAACTTCTAAGAGCCGGCTCAGCATGGCGCCTGCCGTCAGTTTGTAGGGTGCCTATGAGGAATCGAAACGTCGGGCGGGAATTGGGGCTTTTAAACCAAGTTCGAGAGTTTGTAGGGTGCCTATGAGGAATCGAAACCTGCGCTATTGCCACGATCATTTGGGCTGGCGTCCGTTTGTAGGGTGCCTATGAGGAATCGAAACCCGTCACCGCCACCGTTTCGCCCGCTTCGCCCGTTTGTGTTTGTAGGGTGCCTATGACTCGGGTTTGA

>NZ_CP048407|8|3|2553715-2554536|PILER-CR
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCAAAAGCACATACTTGCCGTCGAACCCCTCCCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CTCGATATGTGAACACTGTGGGACCCATGGCCATTGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TGGCGTGGTATAATATGGGTAGTCAGGGGCGGTACGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGTTCATGAACCAGTTCACGAACCCAATCATCCTCT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCGGTACGGAATACCGTACCGCCCCTGACTACCCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCAGCGCCCGCCGAACTTCTTTGCGACGGGCGCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCACAACGAAAAACCATGTTCGTCCCAGGCCAGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCCTCCCTTGTGGCCCGGTCGCGGCCCCCGTTTCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCCGGATGCGGTCATCGAGCGGCTTTGGTCGCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGGCGATCAGTCCATCGACATCGACCAGGCGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCTAAGAGCCGGCTCAGCATGGCGCCTGCCGTCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTCGGGCGGGAATTGGGGCTTTTAAACCAAGTTCGAGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC

>NZ_CP048407|8|8|2553715-2554601|CRISPRCasFinder
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCAAAAGCACATACTTGCCGTCGAACCCCTCCCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CTCGATATGTGAACACTGTGGGACCCATGGCCATTGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TGGCGTGGTATAATATGGGTAGTCAGGGGCGGTACGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGTTCATGAACCAGTTCACGAACCCAATCATCCTCT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCGGTACGGAATACCGTACCGCCCCTGACTACCCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCAGCGCCCGCCGAACTTCTTTGCGACGGGCGCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCACAACGAAAAACCATGTTCGTCCCAGGCCAGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCCTCCCTTGTGGCCCGGTCGCGGCCCCCGTTTCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCCGGATGCGGTCATCGAGCGGCTTTGGTCGCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGGCGATCAGTCCATCGACATCGACCAGGCGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCTAAGAGCCGGCTCAGCATGGCGCCTGCCGTCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTCGGGCGGGAATTGGGGCTTTTAAACCAAGTTCGAGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CTGCGCTATTGCCACGATCATTTGGGCTGGCGTCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC

>NZ_CP048407|8|3|2553715-2554669|CRT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCAAAAGCACATACTTGCCGTCGAACCCCTCCCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CTCGATATGTGAACACTGTGGGACCCATGGCCATTGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TGGCGTGGTATAATATGGGTAGTCAGGGGCGGTACGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGTTCATGAACCAGTTCACGAACCCAATCATCCTCT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCGGTACGGAATACCGTACCGCCCCTGACTACCCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCAGCGCCCGCCGAACTTCTTTGCGACGGGCGCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCACAACGAAAAACCATGTTCGTCCCAGGCCAGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCCTCCCTTGTGGCCCGGTCGCGGCCCCCGTTTCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCCCGGATGCGGTCATCGAGCGGCTTTGGTCGCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGGCGATCAGTCCATCGACATCGACCAGGCGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCTAAGAGCCGGCTCAGCATGGCGCCTGCCGTCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTCGGGCGGGAATTGGGGCTTTTAAACCAAGTTCGAGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CTGCGCTATTGCCACGATCATTTGGGCTGGCGTCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGTCACCGCCACCGTTTCGCCCGCTTCGCCCGTTTGT
GTTTGTAGGGTGCCTATGACTCGGGTTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116899803.1\|2566452_2567796_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381087
NZ_CP048407.1\|WP_116899816.1\|2541267_2542470_-\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP048407.1\|WP_116899895.1\|2548198_2549164_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	unknown	unknown	gnl\|CDD\|184320
NZ_CP048407.1\|WP_116899812.1\|2550683_2551616_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376633
NZ_CP048407.1\|WP_116899896.1\|2545610_2546261_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP048407.1\|WP_116899898.1\|2542501_2544523_-\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236211
NZ_CP048407.1\|WP_116899811.1\|2552103_2553225_-\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|224662
NZ_CP048407.1\|WP_116899815.1\|2546552_2547452_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP048407.1\|WP_158556002.1\|2559831_2561046_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP048407.1\|WP_116899804.1\|2565636_2566404_-\|DUF420-domain-containing-protein	unknown	unknown	gnl\|CDD\|377257
NZ_CP048407.1\|WP_116899805.1\|2564593_2565640_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP048407.1\|WP_116899802.1\|2567811_2568951_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP048407.1\|WP_116899806.1\|2563780_2564548_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130314
NZ_CP048407.1\|WP_116899814.1\|2547448_2548159_-\|phenylacetic-acid-degradation-protein-PaaB	unknown	unknown	gnl\|CDD\|368813
NZ_CP048407.1\|WP_116899807.1\|2561150_2562281_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP048407.1\|WP_116899897.1\|2544700_2545498_-\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	unknown	unknown	gnl\|CDD\|236163
NZ_CP048407.1\|WP_116899809.1\|2559055_2559835_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP048407.1\|WP_116899810.1\|2554826_2556443_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP048407.1\|WP_116899801.1\|2569311_2570214_+\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|236238
NZ_CP048407.1\|WP_116899813.1\|2549635_2550220_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116899803.1\|2566452_2567796_-\|response-regulator-transcription-factor	gnl\|CDD\|381087	cd17532, REC_LytTR_AlgR-like, phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR. Members of the LytTR/AlgR family of response regulators contain a REC domain and a unique LytTR DNA-binding output domain that lacks the helix-turn-helix motif and consists mostly of beta-strands. Transcriptional regulators with the LytTR-type output domains are involved in biosynthesis of extracellular polysaccharides, fimbriation, expression of exoproteins, including toxins, and quorum sensing. Included in this AlgR-like group of LytTR/AlgR family response regulators are Streptococcus agalactiae sensory transduction protein LytR, Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR, Bacillus subtilis sensory transduction protein LytT, and Escherichia coli transcriptional regulatory protein BtsR, which are members of two-component regulatory systems. LytR and LytT are components of regulatory systems that regulate genes involved in cell wall metabolism. AlgR positively regulates the algD gene, which codes for a GDP-mannose dehydrogenase, a key enzyme in the alginate biosynthesis pathway. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.68985e-54
NZ_CP048407.1\|WP_116899816.1\|2541267_2542470_-\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP048407.1\|WP_116899895.1\|2548198_2549164_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	gnl\|CDD\|184320	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional.	3.3434e-179
NZ_CP048407.1\|WP_116899812.1\|2550683_2551616_+\|hypothetical-protein	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	0.00120071
NZ_CP048407.1\|WP_116899896.1\|2545610_2546261_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	4.76609e-38
NZ_CP048407.1\|WP_116899898.1\|2542501_2544523_-\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	1.79897e-111
NZ_CP048407.1\|WP_116899811.1\|2552103_2553225_-\|saccharopine-dehydrogenase	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	1.40757e-33
NZ_CP048407.1\|WP_116899815.1\|2546552_2547452_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	1.2387e-74
NZ_CP048407.1\|WP_158556002.1\|2559831_2561046_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.74808e-47
NZ_CP048407.1\|WP_116899804.1\|2565636_2566404_-\|DUF420-domain-containing-protein	gnl\|CDD\|377257	pfam04238, DUF420, Protein of unknown function (DUF420). Predicted membrane protein with four transmembrane helices.	2.96979e-43
NZ_CP048407.1\|WP_116899805.1\|2564593_2565640_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.60845e-107
NZ_CP048407.1\|WP_116899802.1\|2567811_2568951_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.40864e-108
NZ_CP048407.1\|WP_116899806.1\|2563780_2564548_-\|ABC-transporter-permease	gnl\|CDD\|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.7357e-33
NZ_CP048407.1\|WP_116899814.1\|2547448_2548159_-\|phenylacetic-acid-degradation-protein-PaaB	gnl\|CDD\|368813	pfam06243, PaaB, Phenylacetic acid degradation B. Phenylacetic acid degradation protein B (PaaB) is thought to be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.	2.82838e-21
NZ_CP048407.1\|WP_116899807.1\|2561150_2562281_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.97921e-24
NZ_CP048407.1\|WP_116899897.1\|2544700_2545498_-\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	6.04967e-95
NZ_CP048407.1\|WP_116899809.1\|2559055_2559835_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	9.24822e-82
NZ_CP048407.1\|WP_116899810.1\|2554826_2556443_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.72926e-33
NZ_CP048407.1\|WP_116899801.1\|2569311_2570214_+\|branched-chain-amino-acid-transaminase	gnl\|CDD\|236238	PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed.	0
NZ_CP048407.1\|WP_116899813.1\|2549635_2550220_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	2.17045e-40

>NZ_CP048407.1|WP_116899811.1|2552103_2553225_-|saccharopine-dehydrogenase
MRFVVFGGAGDMGSRAVRELARTPGVAQVTVADRNLEAARSVATAAAEEAAPGCRVVAEAVDILAPGAAAQLMAAHDVAMGAAGPFYLLEEPLARAAIEARRPYISLCDDHDAARRVLELDEPARRAGVTILTGLGWTPGLTNLCVRHAAQRMDRVEAAHIAWAGSSADSRGWAVVLHTMHIFSGRVTSFAAGRWEEVAAGTGAERVEFPPPLGAVTVFHVGHPEPVTLPRFLPGLQEVRLKGGLAEPALNRLAVTFGRWGLMATHRRRQRLGAVLKPLLPLLERVGAPSRPASGLVVRVRGRVGAQVAERSYRAAAPMASLTAVPLALGAFWMAQGRIEGPGVLAPEAPGGPDPEAFFQELAERGVVVDREP
>NZ_CP048407.1|WP_116899812.1|2550683_2551616_+|hypothetical-protein
MMAEPMQRLTGLQMALGIVNEGMLWLICQRLDLQPRCGRKRGQLANWLFREACRHPQLAQRLAAELTPCLLPGYRPGSPPEPQQVVSLLKRSRRKGLALGLLWAMGDTLDDPAWAAAWNRWLKDSADWRRRLEQYMALLNDQETVQVAQSIVTEAEARRDRMRQALVRMARSYREEMKRLKETIATLEEVNRQLAALRPLQNTRILVVGDPNHAGGYRQVVNRYGGDMVFADGTSRQWVRKALDGRYDAIVVVTAYGYHTTQMMIQKHAPEVPLFNARRGGLGEMERVLVTQVIPALFKRLRSLDEPASA
>NZ_CP048407.1|WP_116899813.1|2549635_2550220_-|TetR/AcrR-family-transcriptional-regulator
MGRSTARREEILTVAGELFRQKGYHATSMQDIAERLQLQRGSLYAHIESKEELLFEIVDRAADRFLDGIEQAWREGAAARDRLRRALAAHMAVIAEHRDTASVFFHEWRFLRADLRSRIQAKRDRYEARWRELIADGVARGEFRAVDPRFAALLALSAVNWAYQWYSPDGPLAPDDVAATFAELILKGLEAGSS
>NZ_CP048407.1|WP_116899895.1|2548198_2549164_-|1,2-phenylacetyl-CoA-epoxidase-subunit-A
MPPAGPAGPRDWREEERIAEFTARLERGEKVEAGDWMPSEYRRQCLRLIQTHANSEIMGALPEREWIPRAPTLRRKLALMAKVQDEVGHAQLIYRVAEDLAAPLGITREDMMDALVAGKAKFHNVFSYPAPTWADAGIIAWLVDGAALATQAALLQTSYAPYARILRRICAEEAIHLKHGEDIILTLMSGTRAQQQMVQDALNRWWRPLLHFFGPPDEMSPNLEQAMKWRIKVRTNEELRQEFLSKYVPQIRALGLQIPDPELHYDEAQGRWVYGDPDWDEFWRVVKGQGPRTEARLAIRRLSHEESRWVREALARGAAAA
>NZ_CP048407.1|WP_116899814.1|2547448_2548159_-|phenylacetic-acid-degradation-protein-PaaB
MGVTMEVYEVFGQPRRGEPYIHCGSLLAGDRRNARLLAQQLYCRRQEYVSLWIVPRSCIEAVGEGDADWWQPATDKTYRLGEGFARTRILWQRFGRGPGGGTGGGGGGVGGGGTVRAHGPSPGQDGPEAGAPAHRAGEPGAPDDVVPGAVLNRSGHVRVRRGPRRQDREGRRDPEGAAPGDEGGGARPGTGIAGSGTDAVAGRDAGKGAGPGLGMGNGSAAGTGTGARTGQGGEDR
>NZ_CP048407.1|WP_116899815.1|2546552_2547452_-|phenylacetate-CoA-oxygenase-subunit-PaaC
MNRSNRAHAMEPLPSHPAVAATSGADRGLVALLFALADDELIAGHRASEWTGVAPYLEEDVAFSSIAQDEVGHSALLYQLLADLGQGGGDPDALAFGRDPQDFRNAVLLEQPNGDWAAEIARHFLYSEYEAVLWPALARSPYEPLAAAAARIAREEAYHQAHFRQWVVELSRAGGEARERLASALARALPLAAGFFEPVDGEEQAARWRGTGLEELRRLWWAAVGQVLAEAGLAEPVLGQAGPGEPAGVEPADPGTEGGPAAPGIERGLGGRRGHHSPALTALLAEMTSVYRSDPAAEW
>NZ_CP048407.1|WP_116899896.1|2545610_2546261_-|phenylacetate-CoA-oxygenase-subunit-PaaJ
MRDALWQALAEVSDPEIPVVSVVDLGMVEGVEADARAGSVQVTLLPTFVGCPALGLIRQAVAGRLQAVPGVRQVEVRVAYSPPWSTDRITPEGRRKLASFGIAPPPPAGAGRPSTERPAPEPHGPGQFRGGDAEGAGAGVPGAGAPDLAEGGTRVLPGPAGCGALRRLDTLAAYAATCPFCGSRRTRRENAFGPTPCRSLWYCLDCRNPFEQMKAL
>NZ_CP048407.1|WP_116899897.1|2544700_2545498_-|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase
MAEGDGRYTTILAEREGGVLTLTLNRPEVLNAFNRTMTSELLDALRRAERDPEVRCVVITGAGRAFSAGEDLKSRQEGGEKSFIASLRERYNPLIWKIRTMEKPVLAAVNGVAAGAGLGLALACDLRLASEQARFGQVFVKVGLAPDSGTSLFLLQLVGPARAAEMAFFGDLVPAEEALRMGLVNRVVPHEELAEATRQWAQRLAAGATRAIGLAKRAFNFAAGARLAEVLEYEAYLQEIAGHTADHAEGVQAFLEKREPRFQGR
>NZ_CP048407.1|WP_116899898.1|2542501_2544523_-|3-hydroxyacyl-CoA-dehydrogenase
MGGGIARVAVEAGFAVVLYDVATAALERARRRLEEAWRRHEQEGRVPPGTAAERLGRLQTTTDLGAVAPAAVVIEAAPEDLGLKQDLLASVGRRVRPEALIASNTSSLSITALARVVPGPERVIGLHFFNPVPAMRLVEVVAGALSAPEAVARGVDLARRLGKEPVVCADTPGFVVNRVARPFYGEALRLLGEGAAGVETIDALVRAAGFPMGPFQLMDLIGVDVNLAVTRSVFEGYGGEARYRPHPIQQQLMAAGWLGRKAGRGFYRYGEAGEPVGVAWRGWRQVAAGSGLAGNSPETGPAAAGGQATGAEAIGGQEGLPGRLWVVGDGPLAQALGERWAEAGVEVERIRELREALQRPAGVTGPKTAGIPGAAAAPAPGAAQANPAGPAVTAASTAAATAETPAAPGTPETSAAPETSETSATPATPVPPPAPASAGGPLPAAVVITWEDLDPLAPGFWSQALEDLARLEAGLPPGVLLLVSLLPGPVAEQAWVLVHPQRVVGWAAAPPLGQAVELAAGPTTSPAALARARSWFERAGLAAHPVADGPGGVAARMVAMLIQEAAAAEADGIAEGEAIDRAMRLGTGYPRGLLEWGALWGWRRVLALVEGLWRHYREERYRPLPALRRRALRESKRPGGRASRAPGGTSPGAGRHRVGRRLGEVHRGTGGPW
>NZ_CP048407.1|WP_116899816.1|2541267_2542470_-|acetyl-CoA-C-acyltransferase
MAEPVIVAAVRTPIGRHGGALAPVRPDDLAAVAIHAAVERAGVDPAEVEDVILGCANQAGEDNRNVARMAALLAGLPEHVAGVTVNRLCGSGLEAVLQAARAIRAGEGEVFVAGGVESMSRAPWVMPKPEQGYPRGNVQVFDTTLGWRFVNPRLAAMFPPESMGETAENVAERYGISREDQDRFALASQRKWAAAQEAGKWRDEIVPVEVTGPRGRRAVVEVDEHPRPDTTLEKLASLPPAFRPGGTVTAGNSSGINDGAAALVIMADHRARSLGLRPLARVVAGAVAGVDPRYMGIGPVPATRKVLARAGWQVEDLDLIELNEAFAAQSLACIRELGLPEDRVNVNGGAIAIGHPLGCSGARILTTLVHEMRRRGARRGLATMCVGVGQGIAALVEAVA
>NZ_CP048407.1|WP_116899810.1|2554826_2556443_+|IS1634-family-transposase
MFIRQKTFKNKDGSTRTYLQLVESVRQGGRVRQRVVATLGRLEDLQDGRLDALIENLARFSQSTWRRLEEQAERLNVRWSKQWGPALIFERLWQEAELDKAFAALLEDRQLAFDVAEAVFTMVLNRLTDPCSKRGLVRQWLQGVYRPQAEQLELHHYYRALDVLAEHKEAIEDRLFARARDLFWTEVDVVMWDCTSSYFEGRGPEGLAAYGYSRDKRPDRPQLVVGVLMTRDGYPIAHEVFPGDTADKATVATVLDALKRRFHLRRVIFVADRGMVSRPILRAIEEAGMEYIVGMPLRRHRAAEAVLSQPGRYRKVNKQLQIKQVTHQGQRYILCHNPLQAEHDRQAREAVLAHLKQRIERGQAKDLLRNRLVARYLKALPQGALVVNTDAVKRATRYDGKYLLRTNTDLEPEAVVRAYKDLWRVERAFRTLKSALDLRPMFHWTERRVRGHVMVCFLALVLESLLLRKLRQQNPEASYEDVLSDLAQLHAVAVELDGETYLTRTELVGQAYEAFKAVGLRPPARVQPMPRPATTPAG
>NZ_CP048407.1|WP_116899809.1|2559055_2559835_-|ATP-binding-protein
MITVDKARQHLQALGLKDAAEVLEARLERAAKQDVTYADFLVDLLETELAVRRRRYLDTRTKLARLPFRKTLEDFDFEAQPSIDPRQIRELATLRFLGNAENVIFLGPPGVGKTHLAVSLGLAAIDRGYGVYFTPMHRLIEDLRNAYEERRLERRMRIYLAPKLLIIDELGYLPLDKVGATVFFQLVAARYERGSIVLTSNQTFADWGEVFGDPVIATAILDRLLHHSHVINIRGESYRLREKRRSGLLRSTVDPNQDD
>NZ_CP048407.1|WP_158556002.1|2559831_2561046_-|IS21-family-transposase
MDILRLKAEGLSVREIARRTGLSRNTVRKYLRRPELPQYKPRPPKASKLDPFKPYLEQRMAQGVFNANRLLQELRAQGYTGGKTILKEFLRPHRPSRVPHAVVRFELPPGTQAQVDWGEFAYTDLQGRRRKVYGFVMVLSYSRAMYVEFVEQQDLSTLLRCHLHAFAALGGVPKEILYDNMKTVVLRRHGAEVDYHPRMLDFALLAGFALRACRPYRAQTKGRVERAIGYLKRHFWPAVQFTDLADLNRQVRAWVAEVANRRLHGTTGQRPADRLVEEQAHLTPLRPLAAFTSLLHEERRVSRDGYVQYAGSRYGVPWRYSGRYVTVFATSTEVEIRDGDRVIARHPPALLPGLTIPLPEQYHGLALGGPQRPEPPQGQQVVGPAVERRSLQVYEDLLRAGERR
>NZ_CP048407.1|WP_116899807.1|2561150_2562281_-|IS110-family-transposase
MPRYFGLDLHKRYVHGCEWQVDVQKGRHFRFPNTDAGWATFVQQLRADDCVALEVTGNAFTVHDLLSAYAGKVLLANPLELKRLGAGRHTDRVDAERLAKMLALGMVPAVWVPPPAVREVRYLLQYRDRLVRNRRRYLTQAKSVFQRHGLPIPRNVDPRQWLDREEVNRLPQAERVILLSALRQLETVEIEIQAIEAEIARQVADQPAVQLLLTITGVGLLTAATIWAYLGDLRRFRTAKQVTRYAGLDASVHQSGEQDHRGRISRNGSKLLRTAVVEAAHSVARHDQGPLGAFYHRKQRQIGPHKAVVALARKLLIVAWRMLLTGQPYRAAKPTLVVQKQRRLVEVAQAVTDWNAVAVALWPDRLEDRHRRRRVA
>NZ_CP048407.1|WP_116899806.1|2563780_2564548_-|ABC-transporter-permease
MGEIWLENRAMLQRWWFRLRREPLTWLSTLSQPVLWLLLFGHLLARMAAGDVPGGNYLAFMSAGAVVMTVFNGAINGGVELLFDRETGFLQRLLAAPIQRLSIVTSRFVYIMAVTAAQNLLIILTAYGLGVRFATGLGGIVAALGIGVLFGAGVATLSIALAFAVRRHPEFFTITAFLSLPLLFLSSALAPLDLMPGWMQVLARLNPMTYAIEATRALVLNGWDTQLVFSMLGILLAFDTVALAIAARVLRRGLA
>NZ_CP048407.1|WP_116899805.1|2564593_2565640_-|ATP-binding-cassette-domain-containing-protein
MTGAAGRTSAAASGGPGPTRVPAIEVEHLSRRFGAVEAVRDISFRVEQGEIFGLLGPNGAGKTTTIKVLLSLLKPSSGRVRILGIDVAEQPARARRCVGWVPQETAVDPLLTGRENLLLVAGMYHLPPADAARRAEELLQLVDLSAAADRVVRDYSGGMRKRLDLAMGLVHRPAVLVLDEPTLGLDIQTRRRLWQYIRTFRDRGTTILLTTHYLEEADWLCDRVAIIDEGRCLALDAPARLKARYGSEHLELRVAAGQPAEQVRQLARQLEVLEPVMEVEVDWPGSSSGVAVRIGLRVRDSLAALEPVLATCRAAGIALEGVAARPATLDDVFLHLTGRALRDGETAG
>NZ_CP048407.1|WP_116899804.1|2565636_2566404_-|DUF420-domain-containing-protein
MEPDSLDDGRCGQRPERPNSNVRPNHPCRTIIEFENHDATIHAGKAGATIDPVFVIAATNATLNAISAVVIARAYRQIRAGDVAGHRRGMLLAAGLQAVFLILYLTKSVLYGTTPFEGQAAIRLIYLVILGAHSLAASVTAPLVLVALVLGLRGRYDRHRRVARWAYPIWFFTSVTGPLTFVLLYGFGRPGYGVQALATGMGVQGLPEAVAAIGTTWGPFAGAGGIWTVPGLFLVRALAGIDPTLAALVRVVTWA
>NZ_CP048407.1|WP_116899803.1|2566452_2567796_-|response-regulator-transcription-factor
MMVPAERQAELERPDEQERAGRQRPEREGPDELERPQEFEHRPRSERQPEGRPEEDRGADVAAGPLPATGAGRGPSPAGGPGRGGAAFDQNGDPEWEWDLDGPPPGGRPIRALIVDDEYPARAELRYRLSREPGVEITGEAATAREALRLIGALDYDVVFLDIAMPGISGLELAERLKQQPGAPYVIFTTAYDEYAVKAFEARALDYLLKPYSDDRLREALSRVRERLALRGGAGPARTPATLVAGTVGTTPAGAGPASQVVPDGQVGPAAGPGATAAGSGAQAGSPAPGGVAAQAGRPGAAAAADHAAAPGAAEGAGGGPAATGGGRGRPRPRWVMGVRDEAAVPIPVEEVVYAEAENDQVFVYTATHRLPTRYTLRELEDLLPPDRFFRCHRGYIVNLRKVREISPFFNGTYNLTVVHAGQPVTIPVARSRVPELKRHFWPEQAS
>NZ_CP048407.1|WP_116899802.1|2567811_2568951_-|sensor-histidine-kinase
MTAEWTFLDHTFRIGEETLPYVRQGLNEETAQKICEIIRDIAEVDAVAITDRQTILGYAGLGCPFMVRHQPILTRATRNVLATGRLRLVASKADFECPIAGCPCPLQAAVIAPLKVRDQVVGTLKLYRTHRNDIPGMVHRLGAGIAQLLSLQMELAEAERLRELAARARLEALQAQIRPHFLFNTLNTVLMFSRTDPDRARDLLVKLAVFLRRALTVRDEFIRLEDEMEYVQMYLEIEQARFGDNLRFRVRIDPRAFGCLVPVLTIQPLVENAVVHGLAPREGGGRLTVAARVRGGHLHVVVADSGVGIPPELRQEIFRPGVGKGMGLGLSNVNQRLVGLYGEAYGLRVRSRPGRGTLVRLVVPLRRQAVQPAREEPAR
>NZ_CP048407.1|WP_116899801.1|2569311_2570214_+|branched-chain-amino-acid-transaminase
MLVYVNGRFVPKEEATVSVFDHGFLYGDGVFEGIRAYNGRVFKLDEHIQRLYESARAILLEIPIPPEEMAAAVVETCRRNDLPEAYIRVVVSRGPGDLGIDPRKCDRATVVIIADRLALYPAELYEQGMRVMTVATRRTSPAALNPRVKSLNYLNNILARLEANLAGFAEVIMLNEEGYVAECTGDNIFIVRHGRLLTPPPHLGILQGITRDTVMELARRRGIPVEEAVFTRHDVYVADECFITGTAAEVCPVIEVDGRRLGDGRPGPITRQLMADFREYARSHGTPIWNEPAAQAAAGA

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Crispr_ID: NZ_CP048407_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_9

2556510-2558932

Orphan

Consensus_repeat	Method
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CRISPRCasFinder
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CRT
GTTTGTAGGGTGCCTATGA---GGAATCGAAAC	PILER-CR

36 spacers

The CRISPR arrays of NZ_CP048407_9

>merge|NZ_CP048407|9|2556510-2558932|CRISPRCasFinder,CRT,PILER-CR
GTGTCAAAGTCGAGTATGAGGAATCGAAACACGATCCCCAGGCCGCTTCGAACATGCGGTACGCAGGTTTGTAGGGTGCCTATGAGGAATCGAAACTCCGCAAGACTTCCATGGCATGAGGCGACCAGGTCATGTTTGTAGGGTGCCTATGAGGAATCGAAACGCGCAGATGGCGGCCCGGGAAAGTGAGGGCAGCGGCGTTTGTAGGGTGCCTATGAGGAATCGAAACCGGGACCTCGACGCCGAGCGGTCAGTCCTTGGCGCCTGGTTTGTAGGGTGCCTATGAGGAATCGAAACCCGGCGCACCACCTCCACGGGCCGCAAGACCTGCAGGTTTGTAGGGTGCCTATGAGGAATCGAAACTTCCGGGCCGAGGACGTGCTCGCTCTGGTGTCGTGGTTTGTAGGGTGCCTATGAGGAATCGAAACCGCCCTGGGCGGCGACGCGCACCGACTCGCCCAGCGGTTTGTAGGGTGCCTATGAGGAATCGAAACGGTCGAGAACGTCCGGGTCGCCGGCTGCGAAGCCACCGTTTGTAGGGTGCCTATGAGGAATCGAAACGGCTATGCGACCTACGACGACCTGCTGGCGGCCTCCGAGGTTTGTAGGGTGCCTATGAGGAATCGAAACTGCCGTCACGATCCGCCGGCCGCGCATGCGCACCCCGTTTGTAGGGTGCCTATGAGGAATCGAAACGAGCAGCTCGTCGCCAACGGACTCAGCAACCGCGAGGTTTGTAGGGTGCCTATGAGGAATCGAAACAGGCTTTGGATGAGATGGTTACTGACCGTCTTGGGGGTTTGTAGGGTGCCTATGAGGAATCGAAACCCACCCCTCGGGAAGAAACATGCGGGCCGCCAGGCGTTTGTAGGGTGCCTATGAGGAATCGAAACCCCATGGCTCACACCCGCCTCCCCACGATCTCACCCGAGTTTGTAGGGTGCCTATGAGGAATCGAAACTACCTGCTGGACGGCGACGGCGAGCCGGGCGCGGAGTTTGTAGGGTGCCTATGAGGAATCGAAACCGCCACCATCGGCCTCATGCTCATGGATGGGACATGGTTTGTAGGGTGCCTATGAGGAATCGAAACCGCGGTCACAGAGGTGGTGGGACAGCGGATCGTCTTGTTTGTAGGGTGCCTATGAGGAATCGAAACCCCGGCAGCGTCTCCACCGGCCCGTAGGACTGCCAGTTTGTAGGGTGCCTATGAGGAATCGAAACGATGCGGTGCGGCGCGTACTCGCCGCTCTCGATCTCGTTTGTAGGGTGCCTATGAGGAATCGAAACGGGGCGGACGCCGATAGCCTGGATGGTCTCAACCCGGGTTTGTAGGGTGCCTATGAGGAATCGAAACACAGGGCGCCCGTGGCGCAGTATAATGGCGCCGAAGGTTTGTAGGGTGCCTATGAGGAATCGAAACCAGAAGAGCAACAGCAACAAGGTGGAAGTCATGATGAGTTTGTAGGGTGCCTATGAGGAATCGAAACGTATGGACCCGAATCGTGTCGTGGAGCATTGTGGATCTTGTTTGTAGGGTGCCTATGAGGAATCGAAACTCTCCTCATCAATCTCAAAAATTTCAACAACTATATGTTTGTAGGGTGCCTATGATGAATCGAAACCTTTCTAGGACCCGACAATACGGCGTATCGACTTCACGTTTGTAGGGTGCCTATGAGGAATCGAAACGGCGCCGCACCCGGAAGTAGTAGCCGTCCCGGTCTTGTTTGTAGGGTGCCTATGAGGAATCGAAACGAAGGGCACCTCTTCCTCGGCTGCATCCACCTCCGACGTTTGTAGGGTGCCTATGAGGAATCGAAACCGGCGGCGCGATCACCGCCCAGTAGCGCCGGCCATGGTGTTTGTAGGGTGCCTATGAGGAATCGAAACGCGGAACGGAATGGACCCCGCCAAGGTTGCCACCACGGTTTGTAGGGTGCCTATGAGGAATCGAAACCCCACGCGGTGCCCGGTGCAGTGTGCCATGTCCAGGGTTTGTAGGGTGCCTATGAGGAATCGAAACCCCGTCGAGGTCACAGAGACGAAGGGGCGCCAGCGCGTTTGTAGGGTGCCTATGAGGAATCGAAACCACGTCGCAGGCTGGCCGAACTCGAAGCAGAGGCGCGGCGTTTGTAGGGTGCCTATGAGGAATCGAAACCCGCGACCGCTTCTTCGCCCCAGGACCGCGCCAGTGTTTGTAGGGTGCCTATGAGGAATCGAAACCCGCGTCGCCCTCTCGGGCTTAGTTGCTCTCGCAACGTTTGTAGGGTGCCTATGAGGAATCGAAACGGGCAAGCAGGGCAAGTCGGGTGGCGGTGAAGGAGCGTTTGTAGGGTGCCTATGAGGAATCGAAACCTGCAGCCGAAGGAGACGGACCATCGCGTTCTTCGCGTTTGTAGGGTGCCTATGAGGAATCGAAAC

>NZ_CP048407|9|9|2556510-2558932|CRISPRCasFinder
GTGTCAAAGTCGAGTATGAGGAATCGAAAC	ACGATCCCCAGGCCGCTTCGAACATGCGGTACGCAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCCGCAAGACTTCCATGGCATGAGGCGACCAGGTCAT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGCAGATGGCGGCCCGGGAAAGTGAGGGCAGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGGGACCTCGACGCCGAGCGGTCAGTCCTTGGCGCCTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGGCGCACCACCTCCACGGGCCGCAAGACCTGCAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCGGGCCGAGGACGTGCTCGCTCTGGTGTCGTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCCCTGGGCGGCGACGCGCACCGACTCGCCCAGCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGTCGAGAACGTCCGGGTCGCCGGCTGCGAAGCCACC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCTATGCGACCTACGACGACCTGCTGGCGGCCTCCGAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TGCCGTCACGATCCGCCGGCCGCGCATGCGCACCCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GAGCAGCTCGTCGCCAACGGACTCAGCAACCGCGAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGGCTTTGGATGAGATGGTTACTGACCGTCTTGGGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCACCCCTCGGGAAGAAACATGCGGGCCGCCAGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCATGGCTCACACCCGCCTCCCCACGATCTCACCCGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TACCTGCTGGACGGCGACGGCGAGCCGGGCGCGGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCCACCATCGGCCTCATGCTCATGGATGGGACATG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCGGTCACAGAGGTGGTGGGACAGCGGATCGTCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCGGCAGCGTCTCCACCGGCCCGTAGGACTGCCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GATGCGGTGCGGCGCGTACTCGCCGCTCTCGATCTC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGGGCGGACGCCGATAGCCTGGATGGTCTCAACCCGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ACAGGGCGCCCGTGGCGCAGTATAATGGCGCCGAAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CAGAAGAGCAACAGCAACAAGGTGGAAGTCATGATGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTATGGACCCGAATCGTGTCGTGGAGCATTGTGGATCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCTCCTCATCAATCTCAAAAATTTCAACAACTATAT
GTTTGTAGGGTGCCTATGATGAATCGAAAC	CTTTCTAGGACCCGACAATACGGCGTATCGACTTCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCGCCGCACCCGGAAGTAGTAGCCGTCCCGGTCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GAAGGGCACCTCTTCCTCGGCTGCATCCACCTCCGAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGGCGGCGCGATCACCGCCCAGTAGCGCCGGCCATGGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGGAACGGAATGGACCCCGCCAAGGTTGCCACCACG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCACGCGGTGCCCGGTGCAGTGTGCCATGTCCAGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCGTCGAGGTCACAGAGACGAAGGGGCGCCAGCGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CACGTCGCAGGCTGGCCGAACTCGAAGCAGAGGCGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGCGACCGCTTCTTCGCCCCAGGACCGCGCCAGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGCGTCGCCCTCTCGGGCTTAGTTGCTCTCGCAAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGGCAAGCAGGGCAAGTCGGGTGGCGGTGAAGGAGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CTGCAGCCGAAGGAGACGGACCATCGCGTTCTTCGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC

>NZ_CP048407|9|4|2556510-2558932|CRT
GTGTCAAAGTCGAGTATGAGGAATCGAAAC	ACGATCCCCAGGCCGCTTCGAACATGCGGTACGCAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCCGCAAGACTTCCATGGCATGAGGCGACCAGGTCAT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGCAGATGGCGGCCCGGGAAAGTGAGGGCAGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGGGACCTCGACGCCGAGCGGTCAGTCCTTGGCGCCTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGGCGCACCACCTCCACGGGCCGCAAGACCTGCAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCGGGCCGAGGACGTGCTCGCTCTGGTGTCGTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCCCTGGGCGGCGACGCGCACCGACTCGCCCAGCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGTCGAGAACGTCCGGGTCGCCGGCTGCGAAGCCACC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCTATGCGACCTACGACGACCTGCTGGCGGCCTCCGAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TGCCGTCACGATCCGCCGGCCGCGCATGCGCACCCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GAGCAGCTCGTCGCCAACGGACTCAGCAACCGCGAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGGCTTTGGATGAGATGGTTACTGACCGTCTTGGGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCACCCCTCGGGAAGAAACATGCGGGCCGCCAGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCATGGCTCACACCCGCCTCCCCACGATCTCACCCGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TACCTGCTGGACGGCGACGGCGAGCCGGGCGCGGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCCACCATCGGCCTCATGCTCATGGATGGGACATG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCGGTCACAGAGGTGGTGGGACAGCGGATCGTCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCGGCAGCGTCTCCACCGGCCCGTAGGACTGCCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GATGCGGTGCGGCGCGTACTCGCCGCTCTCGATCTC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGGGCGGACGCCGATAGCCTGGATGGTCTCAACCCGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ACAGGGCGCCCGTGGCGCAGTATAATGGCGCCGAAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CAGAAGAGCAACAGCAACAAGGTGGAAGTCATGATGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTATGGACCCGAATCGTGTCGTGGAGCATTGTGGATCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCTCCTCATCAATCTCAAAAATTTCAACAACTATAT
GTTTGTAGGGTGCCTATGATGAATCGAAAC	CTTTCTAGGACCCGACAATACGGCGTATCGACTTCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCGCCGCACCCGGAAGTAGTAGCCGTCCCGGTCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GAAGGGCACCTCTTCCTCGGCTGCATCCACCTCCGAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGGCGGCGCGATCACCGCCCAGTAGCGCCGGCCATGGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGGAACGGAATGGACCCCGCCAAGGTTGCCACCACG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCACGCGGTGCCCGGTGCAGTGTGCCATGTCCAGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCGTCGAGGTCACAGAGACGAAGGGGCGCCAGCGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CACGTCGCAGGCTGGCCGAACTCGAAGCAGAGGCGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGCGACCGCTTCTTCGCCCCAGGACCGCGCCAGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGCGTCGCCCTCTCGGGCTTAGTTGCTCTCGCAAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGGCAAGCAGGGCAAGTCGGGTGGCGGTGAAGGAGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CTGCAGCCGAAGGAGACGGACCATCGCGTTCTTCGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC

>NZ_CP048407|9|4|2556576-2558932|PILER-CR
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCCGCAAGACTTCCATGGCATGAGGCGACCAGGTCAT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGCAGATGGCGGCCCGGGAAAGTGAGGGCAGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGGGACCTCGACGCCGAGCGGTCAGTCCTTGGCGCCTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGGCGCACCACCTCCACGGGCCGCAAGACCTGCAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCGGGCCGAGGACGTGCTCGCTCTGGTGTCGTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCCCTGGGCGGCGACGCGCACCGACTCGCCCAGCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGTCGAGAACGTCCGGGTCGCCGGCTGCGAAGCCACC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCTATGCGACCTACGACGACCTGCTGGCGGCCTCCGAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TGCCGTCACGATCCGCCGGCCGCGCATGCGCACCCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GAGCAGCTCGTCGCCAACGGACTCAGCAACCGCGAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGGCTTTGGATGAGATGGTTACTGACCGTCTTGGGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCACCCCTCGGGAAGAAACATGCGGGCCGCCAGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCATGGCTCACACCCGCCTCCCCACGATCTCACCCGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TACCTGCTGGACGGCGACGGCGAGCCGGGCGCGGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCCACCATCGGCCTCATGCTCATGGATGGGACATG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCGGTCACAGAGGTGGTGGGACAGCGGATCGTCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCGGCAGCGTCTCCACCGGCCCGTAGGACTGCCA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GATGCGGTGCGGCGCGTACTCGCCGCTCTCGATCTC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGGGCGGACGCCGATAGCCTGGATGGTCTCAACCCGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ACAGGGCGCCCGTGGCGCAGTATAATGGCGCCGAAG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CAGAAGAGCAACAGCAACAAGGTGGAAGTCATGATGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTATGGACCCGAATCGTGTCGTGGAGCATTGTGGATCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCTCCTCATCAATCTCAAAAATTTCAACAACTATAT
GTTTGTAGGGTGCCTATGATGAATCGAAAC	CTTTCTAGGACCCGACAATACGGCGTATCGACTTCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGCGCCGCACCCGGAAGTAGTAGCCGTCCCGGTCTT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GAAGGGCACCTCTTCCTCGGCTGCATCCACCTCCGAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGGCGGCGCGATCACCGCCCAGTAGCGCCGGCCATGGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GCGGAACGGAATGGACCCCGCCAAGGTTGCCACCACG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCACGCGGTGCCCGGTGCAGTGTGCCATGTCCAGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCCGTCGAGGTCACAGAGACGAAGGGGCGCCAGCGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CACGTCGCAGGCTGGCCGAACTCGAAGCAGAGGCGCGGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGCGACCGCTTCTTCGCCCCAGGACCGCGCCAGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGCGTCGCCCTCTCGGGCTTAGTTGCTCTCGCAAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GGGCAAGCAGGGCAAGTCGGGTGGCGGTGAAGGAGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CTGCAGCCGAAGGAGACGGACCATCGCGTTCTTCGC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116899800.1\|2570327_2571731_-\|magnesium-transporter-CorA	unknown	unknown	gnl\|CDD\|213356
NZ_CP048407.1\|WP_116899803.1\|2566452_2567796_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381087
NZ_CP048407.1\|WP_116899895.1\|2548198_2549164_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	unknown	unknown	gnl\|CDD\|184320
NZ_CP048407.1\|WP_116899812.1\|2550683_2551616_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376633
NZ_CP048407.1\|WP_116899896.1\|2545610_2546261_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP048407.1\|WP_116899898.1\|2542501_2544523_-\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236211
NZ_CP048407.1\|WP_116899811.1\|2552103_2553225_-\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|224662
NZ_CP048407.1\|WP_116899815.1\|2546552_2547452_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP048407.1\|WP_158556002.1\|2559831_2561046_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP048407.1\|WP_116899804.1\|2565636_2566404_-\|DUF420-domain-containing-protein	unknown	unknown	gnl\|CDD\|377257
NZ_CP048407.1\|WP_116899805.1\|2564593_2565640_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP048407.1\|WP_116899802.1\|2567811_2568951_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP048407.1\|WP_116899806.1\|2563780_2564548_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130314
NZ_CP048407.1\|WP_116899814.1\|2547448_2548159_-\|phenylacetic-acid-degradation-protein-PaaB	unknown	unknown	gnl\|CDD\|368813
NZ_CP048407.1\|WP_116899807.1\|2561150_2562281_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP048407.1\|WP_116899897.1\|2544700_2545498_-\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	unknown	unknown	gnl\|CDD\|236163
NZ_CP048407.1\|WP_116899810.1\|2554826_2556443_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP048407.1\|WP_116899809.1\|2559055_2559835_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP048407.1\|WP_116899801.1\|2569311_2570214_+\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|236238
NZ_CP048407.1\|WP_116899813.1\|2549635_2550220_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116899800.1\|2570327_2571731_-\|magnesium-transporter-CorA	gnl\|CDD\|213356	cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.46199e-46
NZ_CP048407.1\|WP_116899803.1\|2566452_2567796_-\|response-regulator-transcription-factor	gnl\|CDD\|381087	cd17532, REC_LytTR_AlgR-like, phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR. Members of the LytTR/AlgR family of response regulators contain a REC domain and a unique LytTR DNA-binding output domain that lacks the helix-turn-helix motif and consists mostly of beta-strands. Transcriptional regulators with the LytTR-type output domains are involved in biosynthesis of extracellular polysaccharides, fimbriation, expression of exoproteins, including toxins, and quorum sensing. Included in this AlgR-like group of LytTR/AlgR family response regulators are Streptococcus agalactiae sensory transduction protein LytR, Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR, Bacillus subtilis sensory transduction protein LytT, and Escherichia coli transcriptional regulatory protein BtsR, which are members of two-component regulatory systems. LytR and LytT are components of regulatory systems that regulate genes involved in cell wall metabolism. AlgR positively regulates the algD gene, which codes for a GDP-mannose dehydrogenase, a key enzyme in the alginate biosynthesis pathway. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.68985e-54
NZ_CP048407.1\|WP_116899895.1\|2548198_2549164_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	gnl\|CDD\|184320	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional.	3.3434e-179
NZ_CP048407.1\|WP_116899812.1\|2550683_2551616_+\|hypothetical-protein	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	0.00120071
NZ_CP048407.1\|WP_116899896.1\|2545610_2546261_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	4.76609e-38
NZ_CP048407.1\|WP_116899898.1\|2542501_2544523_-\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	1.79897e-111
NZ_CP048407.1\|WP_116899811.1\|2552103_2553225_-\|saccharopine-dehydrogenase	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	1.40757e-33
NZ_CP048407.1\|WP_116899815.1\|2546552_2547452_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	1.2387e-74
NZ_CP048407.1\|WP_158556002.1\|2559831_2561046_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.74808e-47
NZ_CP048407.1\|WP_116899804.1\|2565636_2566404_-\|DUF420-domain-containing-protein	gnl\|CDD\|377257	pfam04238, DUF420, Protein of unknown function (DUF420). Predicted membrane protein with four transmembrane helices.	2.96979e-43
NZ_CP048407.1\|WP_116899805.1\|2564593_2565640_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.60845e-107
NZ_CP048407.1\|WP_116899802.1\|2567811_2568951_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.40864e-108
NZ_CP048407.1\|WP_116899806.1\|2563780_2564548_-\|ABC-transporter-permease	gnl\|CDD\|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.7357e-33
NZ_CP048407.1\|WP_116899814.1\|2547448_2548159_-\|phenylacetic-acid-degradation-protein-PaaB	gnl\|CDD\|368813	pfam06243, PaaB, Phenylacetic acid degradation B. Phenylacetic acid degradation protein B (PaaB) is thought to be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.	2.82838e-21
NZ_CP048407.1\|WP_116899807.1\|2561150_2562281_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.97921e-24
NZ_CP048407.1\|WP_116899897.1\|2544700_2545498_-\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	6.04967e-95
NZ_CP048407.1\|WP_116899810.1\|2554826_2556443_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.72926e-33
NZ_CP048407.1\|WP_116899809.1\|2559055_2559835_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	9.24822e-82
NZ_CP048407.1\|WP_116899801.1\|2569311_2570214_+\|branched-chain-amino-acid-transaminase	gnl\|CDD\|236238	PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed.	0
NZ_CP048407.1\|WP_116899813.1\|2549635_2550220_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	2.17045e-40

>NZ_CP048407.1|WP_116899810.1|2554826_2556443_+|IS1634-family-transposase
MFIRQKTFKNKDGSTRTYLQLVESVRQGGRVRQRVVATLGRLEDLQDGRLDALIENLARFSQSTWRRLEEQAERLNVRWSKQWGPALIFERLWQEAELDKAFAALLEDRQLAFDVAEAVFTMVLNRLTDPCSKRGLVRQWLQGVYRPQAEQLELHHYYRALDVLAEHKEAIEDRLFARARDLFWTEVDVVMWDCTSSYFEGRGPEGLAAYGYSRDKRPDRPQLVVGVLMTRDGYPIAHEVFPGDTADKATVATVLDALKRRFHLRRVIFVADRGMVSRPILRAIEEAGMEYIVGMPLRRHRAAEAVLSQPGRYRKVNKQLQIKQVTHQGQRYILCHNPLQAEHDRQAREAVLAHLKQRIERGQAKDLLRNRLVARYLKALPQGALVVNTDAVKRATRYDGKYLLRTNTDLEPEAVVRAYKDLWRVERAFRTLKSALDLRPMFHWTERRVRGHVMVCFLALVLESLLLRKLRQQNPEASYEDVLSDLAQLHAVAVELDGETYLTRTELVGQAYEAFKAVGLRPPARVQPMPRPATTPAG
>NZ_CP048407.1|WP_116899811.1|2552103_2553225_-|saccharopine-dehydrogenase
MRFVVFGGAGDMGSRAVRELARTPGVAQVTVADRNLEAARSVATAAAEEAAPGCRVVAEAVDILAPGAAAQLMAAHDVAMGAAGPFYLLEEPLARAAIEARRPYISLCDDHDAARRVLELDEPARRAGVTILTGLGWTPGLTNLCVRHAAQRMDRVEAAHIAWAGSSADSRGWAVVLHTMHIFSGRVTSFAAGRWEEVAAGTGAERVEFPPPLGAVTVFHVGHPEPVTLPRFLPGLQEVRLKGGLAEPALNRLAVTFGRWGLMATHRRRQRLGAVLKPLLPLLERVGAPSRPASGLVVRVRGRVGAQVAERSYRAAAPMASLTAVPLALGAFWMAQGRIEGPGVLAPEAPGGPDPEAFFQELAERGVVVDREP
>NZ_CP048407.1|WP_116899812.1|2550683_2551616_+|hypothetical-protein
MMAEPMQRLTGLQMALGIVNEGMLWLICQRLDLQPRCGRKRGQLANWLFREACRHPQLAQRLAAELTPCLLPGYRPGSPPEPQQVVSLLKRSRRKGLALGLLWAMGDTLDDPAWAAAWNRWLKDSADWRRRLEQYMALLNDQETVQVAQSIVTEAEARRDRMRQALVRMARSYREEMKRLKETIATLEEVNRQLAALRPLQNTRILVVGDPNHAGGYRQVVNRYGGDMVFADGTSRQWVRKALDGRYDAIVVVTAYGYHTTQMMIQKHAPEVPLFNARRGGLGEMERVLVTQVIPALFKRLRSLDEPASA
>NZ_CP048407.1|WP_116899813.1|2549635_2550220_-|TetR/AcrR-family-transcriptional-regulator
MGRSTARREEILTVAGELFRQKGYHATSMQDIAERLQLQRGSLYAHIESKEELLFEIVDRAADRFLDGIEQAWREGAAARDRLRRALAAHMAVIAEHRDTASVFFHEWRFLRADLRSRIQAKRDRYEARWRELIADGVARGEFRAVDPRFAALLALSAVNWAYQWYSPDGPLAPDDVAATFAELILKGLEAGSS
>NZ_CP048407.1|WP_116899895.1|2548198_2549164_-|1,2-phenylacetyl-CoA-epoxidase-subunit-A
MPPAGPAGPRDWREEERIAEFTARLERGEKVEAGDWMPSEYRRQCLRLIQTHANSEIMGALPEREWIPRAPTLRRKLALMAKVQDEVGHAQLIYRVAEDLAAPLGITREDMMDALVAGKAKFHNVFSYPAPTWADAGIIAWLVDGAALATQAALLQTSYAPYARILRRICAEEAIHLKHGEDIILTLMSGTRAQQQMVQDALNRWWRPLLHFFGPPDEMSPNLEQAMKWRIKVRTNEELRQEFLSKYVPQIRALGLQIPDPELHYDEAQGRWVYGDPDWDEFWRVVKGQGPRTEARLAIRRLSHEESRWVREALARGAAAA
>NZ_CP048407.1|WP_116899814.1|2547448_2548159_-|phenylacetic-acid-degradation-protein-PaaB
MGVTMEVYEVFGQPRRGEPYIHCGSLLAGDRRNARLLAQQLYCRRQEYVSLWIVPRSCIEAVGEGDADWWQPATDKTYRLGEGFARTRILWQRFGRGPGGGTGGGGGGVGGGGTVRAHGPSPGQDGPEAGAPAHRAGEPGAPDDVVPGAVLNRSGHVRVRRGPRRQDREGRRDPEGAAPGDEGGGARPGTGIAGSGTDAVAGRDAGKGAGPGLGMGNGSAAGTGTGARTGQGGEDR
>NZ_CP048407.1|WP_116899815.1|2546552_2547452_-|phenylacetate-CoA-oxygenase-subunit-PaaC
MNRSNRAHAMEPLPSHPAVAATSGADRGLVALLFALADDELIAGHRASEWTGVAPYLEEDVAFSSIAQDEVGHSALLYQLLADLGQGGGDPDALAFGRDPQDFRNAVLLEQPNGDWAAEIARHFLYSEYEAVLWPALARSPYEPLAAAAARIAREEAYHQAHFRQWVVELSRAGGEARERLASALARALPLAAGFFEPVDGEEQAARWRGTGLEELRRLWWAAVGQVLAEAGLAEPVLGQAGPGEPAGVEPADPGTEGGPAAPGIERGLGGRRGHHSPALTALLAEMTSVYRSDPAAEW
>NZ_CP048407.1|WP_116899896.1|2545610_2546261_-|phenylacetate-CoA-oxygenase-subunit-PaaJ
MRDALWQALAEVSDPEIPVVSVVDLGMVEGVEADARAGSVQVTLLPTFVGCPALGLIRQAVAGRLQAVPGVRQVEVRVAYSPPWSTDRITPEGRRKLASFGIAPPPPAGAGRPSTERPAPEPHGPGQFRGGDAEGAGAGVPGAGAPDLAEGGTRVLPGPAGCGALRRLDTLAAYAATCPFCGSRRTRRENAFGPTPCRSLWYCLDCRNPFEQMKAL
>NZ_CP048407.1|WP_116899897.1|2544700_2545498_-|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase
MAEGDGRYTTILAEREGGVLTLTLNRPEVLNAFNRTMTSELLDALRRAERDPEVRCVVITGAGRAFSAGEDLKSRQEGGEKSFIASLRERYNPLIWKIRTMEKPVLAAVNGVAAGAGLGLALACDLRLASEQARFGQVFVKVGLAPDSGTSLFLLQLVGPARAAEMAFFGDLVPAEEALRMGLVNRVVPHEELAEATRQWAQRLAAGATRAIGLAKRAFNFAAGARLAEVLEYEAYLQEIAGHTADHAEGVQAFLEKREPRFQGR
>NZ_CP048407.1|WP_116899898.1|2542501_2544523_-|3-hydroxyacyl-CoA-dehydrogenase
MGGGIARVAVEAGFAVVLYDVATAALERARRRLEEAWRRHEQEGRVPPGTAAERLGRLQTTTDLGAVAPAAVVIEAAPEDLGLKQDLLASVGRRVRPEALIASNTSSLSITALARVVPGPERVIGLHFFNPVPAMRLVEVVAGALSAPEAVARGVDLARRLGKEPVVCADTPGFVVNRVARPFYGEALRLLGEGAAGVETIDALVRAAGFPMGPFQLMDLIGVDVNLAVTRSVFEGYGGEARYRPHPIQQQLMAAGWLGRKAGRGFYRYGEAGEPVGVAWRGWRQVAAGSGLAGNSPETGPAAAGGQATGAEAIGGQEGLPGRLWVVGDGPLAQALGERWAEAGVEVERIRELREALQRPAGVTGPKTAGIPGAAAAPAPGAAQANPAGPAVTAASTAAATAETPAAPGTPETSAAPETSETSATPATPVPPPAPASAGGPLPAAVVITWEDLDPLAPGFWSQALEDLARLEAGLPPGVLLLVSLLPGPVAEQAWVLVHPQRVVGWAAAPPLGQAVELAAGPTTSPAALARARSWFERAGLAAHPVADGPGGVAARMVAMLIQEAAAAEADGIAEGEAIDRAMRLGTGYPRGLLEWGALWGWRRVLALVEGLWRHYREERYRPLPALRRRALRESKRPGGRASRAPGGTSPGAGRHRVGRRLGEVHRGTGGPW
>NZ_CP048407.1|WP_116899809.1|2559055_2559835_-|ATP-binding-protein
MITVDKARQHLQALGLKDAAEVLEARLERAAKQDVTYADFLVDLLETELAVRRRRYLDTRTKLARLPFRKTLEDFDFEAQPSIDPRQIRELATLRFLGNAENVIFLGPPGVGKTHLAVSLGLAAIDRGYGVYFTPMHRLIEDLRNAYEERRLERRMRIYLAPKLLIIDELGYLPLDKVGATVFFQLVAARYERGSIVLTSNQTFADWGEVFGDPVIATAILDRLLHHSHVINIRGESYRLREKRRSGLLRSTVDPNQDD
>NZ_CP048407.1|WP_158556002.1|2559831_2561046_-|IS21-family-transposase
MDILRLKAEGLSVREIARRTGLSRNTVRKYLRRPELPQYKPRPPKASKLDPFKPYLEQRMAQGVFNANRLLQELRAQGYTGGKTILKEFLRPHRPSRVPHAVVRFELPPGTQAQVDWGEFAYTDLQGRRRKVYGFVMVLSYSRAMYVEFVEQQDLSTLLRCHLHAFAALGGVPKEILYDNMKTVVLRRHGAEVDYHPRMLDFALLAGFALRACRPYRAQTKGRVERAIGYLKRHFWPAVQFTDLADLNRQVRAWVAEVANRRLHGTTGQRPADRLVEEQAHLTPLRPLAAFTSLLHEERRVSRDGYVQYAGSRYGVPWRYSGRYVTVFATSTEVEIRDGDRVIARHPPALLPGLTIPLPEQYHGLALGGPQRPEPPQGQQVVGPAVERRSLQVYEDLLRAGERR
>NZ_CP048407.1|WP_116899807.1|2561150_2562281_-|IS110-family-transposase
MPRYFGLDLHKRYVHGCEWQVDVQKGRHFRFPNTDAGWATFVQQLRADDCVALEVTGNAFTVHDLLSAYAGKVLLANPLELKRLGAGRHTDRVDAERLAKMLALGMVPAVWVPPPAVREVRYLLQYRDRLVRNRRRYLTQAKSVFQRHGLPIPRNVDPRQWLDREEVNRLPQAERVILLSALRQLETVEIEIQAIEAEIARQVADQPAVQLLLTITGVGLLTAATIWAYLGDLRRFRTAKQVTRYAGLDASVHQSGEQDHRGRISRNGSKLLRTAVVEAAHSVARHDQGPLGAFYHRKQRQIGPHKAVVALARKLLIVAWRMLLTGQPYRAAKPTLVVQKQRRLVEVAQAVTDWNAVAVALWPDRLEDRHRRRRVA
>NZ_CP048407.1|WP_116899806.1|2563780_2564548_-|ABC-transporter-permease
MGEIWLENRAMLQRWWFRLRREPLTWLSTLSQPVLWLLLFGHLLARMAAGDVPGGNYLAFMSAGAVVMTVFNGAINGGVELLFDRETGFLQRLLAAPIQRLSIVTSRFVYIMAVTAAQNLLIILTAYGLGVRFATGLGGIVAALGIGVLFGAGVATLSIALAFAVRRHPEFFTITAFLSLPLLFLSSALAPLDLMPGWMQVLARLNPMTYAIEATRALVLNGWDTQLVFSMLGILLAFDTVALAIAARVLRRGLA
>NZ_CP048407.1|WP_116899805.1|2564593_2565640_-|ATP-binding-cassette-domain-containing-protein
MTGAAGRTSAAASGGPGPTRVPAIEVEHLSRRFGAVEAVRDISFRVEQGEIFGLLGPNGAGKTTTIKVLLSLLKPSSGRVRILGIDVAEQPARARRCVGWVPQETAVDPLLTGRENLLLVAGMYHLPPADAARRAEELLQLVDLSAAADRVVRDYSGGMRKRLDLAMGLVHRPAVLVLDEPTLGLDIQTRRRLWQYIRTFRDRGTTILLTTHYLEEADWLCDRVAIIDEGRCLALDAPARLKARYGSEHLELRVAAGQPAEQVRQLARQLEVLEPVMEVEVDWPGSSSGVAVRIGLRVRDSLAALEPVLATCRAAGIALEGVAARPATLDDVFLHLTGRALRDGETAG
>NZ_CP048407.1|WP_116899804.1|2565636_2566404_-|DUF420-domain-containing-protein
MEPDSLDDGRCGQRPERPNSNVRPNHPCRTIIEFENHDATIHAGKAGATIDPVFVIAATNATLNAISAVVIARAYRQIRAGDVAGHRRGMLLAAGLQAVFLILYLTKSVLYGTTPFEGQAAIRLIYLVILGAHSLAASVTAPLVLVALVLGLRGRYDRHRRVARWAYPIWFFTSVTGPLTFVLLYGFGRPGYGVQALATGMGVQGLPEAVAAIGTTWGPFAGAGGIWTVPGLFLVRALAGIDPTLAALVRVVTWA
>NZ_CP048407.1|WP_116899803.1|2566452_2567796_-|response-regulator-transcription-factor
MMVPAERQAELERPDEQERAGRQRPEREGPDELERPQEFEHRPRSERQPEGRPEEDRGADVAAGPLPATGAGRGPSPAGGPGRGGAAFDQNGDPEWEWDLDGPPPGGRPIRALIVDDEYPARAELRYRLSREPGVEITGEAATAREALRLIGALDYDVVFLDIAMPGISGLELAERLKQQPGAPYVIFTTAYDEYAVKAFEARALDYLLKPYSDDRLREALSRVRERLALRGGAGPARTPATLVAGTVGTTPAGAGPASQVVPDGQVGPAAGPGATAAGSGAQAGSPAPGGVAAQAGRPGAAAAADHAAAPGAAEGAGGGPAATGGGRGRPRPRWVMGVRDEAAVPIPVEEVVYAEAENDQVFVYTATHRLPTRYTLRELEDLLPPDRFFRCHRGYIVNLRKVREISPFFNGTYNLTVVHAGQPVTIPVARSRVPELKRHFWPEQAS
>NZ_CP048407.1|WP_116899802.1|2567811_2568951_-|sensor-histidine-kinase
MTAEWTFLDHTFRIGEETLPYVRQGLNEETAQKICEIIRDIAEVDAVAITDRQTILGYAGLGCPFMVRHQPILTRATRNVLATGRLRLVASKADFECPIAGCPCPLQAAVIAPLKVRDQVVGTLKLYRTHRNDIPGMVHRLGAGIAQLLSLQMELAEAERLRELAARARLEALQAQIRPHFLFNTLNTVLMFSRTDPDRARDLLVKLAVFLRRALTVRDEFIRLEDEMEYVQMYLEIEQARFGDNLRFRVRIDPRAFGCLVPVLTIQPLVENAVVHGLAPREGGGRLTVAARVRGGHLHVVVADSGVGIPPELRQEIFRPGVGKGMGLGLSNVNQRLVGLYGEAYGLRVRSRPGRGTLVRLVVPLRRQAVQPAREEPAR
>NZ_CP048407.1|WP_116899801.1|2569311_2570214_+|branched-chain-amino-acid-transaminase
MLVYVNGRFVPKEEATVSVFDHGFLYGDGVFEGIRAYNGRVFKLDEHIQRLYESARAILLEIPIPPEEMAAAVVETCRRNDLPEAYIRVVVSRGPGDLGIDPRKCDRATVVIIADRLALYPAELYEQGMRVMTVATRRTSPAALNPRVKSLNYLNNILARLEANLAGFAEVIMLNEEGYVAECTGDNIFIVRHGRLLTPPPHLGILQGITRDTVMELARRRGIPVEEAVFTRHDVYVADECFITGTAAEVCPVIEVDGRRLGDGRPGPITRQLMADFREYARSHGTPIWNEPAAQAAAGA
>NZ_CP048407.1|WP_116899800.1|2570327_2571731_-|magnesium-transporter-CorA
MIRAWEWSERGLVEGRVPGDGQAPGQGPGGAEASGAPGRDPEGGAARVEAPGDPRAEPAAYGTTGRADGHRVVVWLDVRDPTPADWDLLRRRRALAPFLWSRLESGTAPYGVEAAGGTLVFQILLPAGRPCLVILAPGEVTTVCDGGADPWERLRERLATGPPSVPRTAPWLLYFLLEDVLHSYGDHVQRLEDRLEPVEAHFLRDEPGPGGAPAGQGDADRTGNTVPGAGASGRAGPASGETAPSPAGPAGGRTGRAPAGPAAGQTGKAPAGAASDRTRQPPVGEPRWRRVRGPRPAAVHGAGRPASGRWRDAGGVSFLSTLHRRAGQLHRRLNSLSEVLDRLLESSYNGYEGRGEGLGDRQLRPYLRALRDHAGRLSGRLENARELVVTLMNLRLALAAERTNRLILRLTVLSTIFLPLTFLTGIYGMNFKYMPELDLPWAYPALLAFMLVLGVGLWWFFKREYEW

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Crispr_ID: NZ_CP048407_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048407_10

2562589-2563681

Orphan

Consensus_repeat	Method
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CRT
GTTTGTAGGGTGCCTATGA---GGAATCGAAAC	PILER-CR
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CRISPRCasFinder

16 spacers

The CRISPR arrays of NZ_CP048407_10

>merge|NZ_CP048407|10|2562589-2563681|CRT,PILER-CR,CRISPRCasFinder
CCGGCCGTGACACCTATGAGGAATCGAAACGGCGAGCACGACTGTGGTAAGCATCACTACGGCGAGTTTGTAGGGTGCCTATGAGGAATCGAAACAGCCTGGACTACCTGCGAGGCGAGGCGGAGAAGGCCGTTTGTAGGGTGCCTATGAGGAATCGAAACCGCGCCAGCGGCTCCATGGCCTACACCGCCTCGTCGGTTTGTAGGGTGCCTATGAGGAATCGAAACTCAAGGTCCGCAGGTGCCTCGCCCCACCGGGCCGGTGTTTGTAGGGTGCCTATGAGGAATCGAAACATGACACCAGCGGCTAGATAACCCCGCGCCGTGGGCATGTTTGTAGGGTGCCTATGAGGAATCGAAACGTCATAGATCGTGGTCGCCGCTGCCGGCTGGACGGGGTTTGTAGGGTGCCTATGAGGAATCGAAACAGTGTGGGACTCCTGCTCCTGCAGCTGCGGCGCCTGGTTTGTAGGGTGCCTATGAGGAATCGAAACTTCCCGGGCCACCGCATCGCGGCCACCCGTTTCGCGGTTTGTAGGGTGCCTATGAGGAATCGAAACCACCGACCACGCCGTTCGTGCTGGCGAGCAAACACCGGTTTGTAGGGTACCTATGAGGAATCGAAACCTTAGGCGCCGCATCCCGCCACGCCAGCCCTGCCCAGGTTTGTAGGGTGCCTATCAGGAATCGAAACTCGGTGGCAACCGTGAGCTCCGCGCCGCAGCGCCGCACGTTTGGAGGGTGCCTATGAGGAATCGAAACGCGAGCGCCTCGCCCTTCAAGCCGGCGACGCTCACGTTTGTAGGGTGCCTATGAGGAATCGAAACATTTGGACTCTATGTCCAATCGCCAGGGGATCCAAGGTTTGTAGGGTGCCCATGAGGAATCGAAACCCGGCACTCCGCCCAGTATGGGCAGGCCGTCGGCGAGTTTGTAGGGTGCCTATGAGGAATCGAAACCCGGAGCCGGGACCAGAAGCGCTTCAAGGTGACGCCGGGTTTGTAGGGTGCCTATGAGGAATCGAAACTTCTCCCGCAGAAAATACGGTGTGGCGTCGATCACGTGTTTGTAGGGTACCTATGAGGAATTGAAAT

>NZ_CP048407|10|5|2562589-2563681|CRT
CCGGCCGTGACACCTATGAGGAATCGAAAC	GGCGAGCACGACTGTGGTAAGCATCACTACGGCGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGCCTGGACTACCTGCGAGGCGAGGCGGAGAAGGCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCGCCAGCGGCTCCATGGCCTACACCGCCTCGTCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCAAGGTCCGCAGGTGCCTCGCCCCACCGGGCCGGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ATGACACCAGCGGCTAGATAACCCCGCGCCGTGGGCAT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTCATAGATCGTGGTCGCCGCTGCCGGCTGGACGGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGTGTGGGACTCCTGCTCCTGCAGCTGCGGCGCCTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCCGGGCCACCGCATCGCGGCCACCCGTTTCGCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CACCGACCACGCCGTTCGTGCTGGCGAGCAAACACCG
GTTTGTAGGGTACCTATGAGGAATCGAAAC	CTTAGGCGCCGCATCCCGCCACGCCAGCCCTGCCCAG
GTTTGTAGGGTGCCTATCAGGAATCGAAAC	TCGGTGGCAACCGTGAGCTCCGCGCCGCAGCGCCGCAC
GTTTGGAGGGTGCCTATGAGGAATCGAAAC	GCGAGCGCCTCGCCCTTCAAGCCGGCGACGCTCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ATTTGGACTCTATGTCCAATCGCCAGGGGATCCAAG
GTTTGTAGGGTGCCCATGAGGAATCGAAAC	CCGGCACTCCGCCCAGTATGGGCAGGCCGTCGGCGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGGAGCCGGGACCAGAAGCGCTTCAAGGTGACGCCGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCTCCCGCAGAAAATACGGTGTGGCGTCGATCACGT
GTTTGTAGGGTACCTATGAGGAATTGAAAT

>NZ_CP048407|10|5|2562654-2563681|PILER-CR
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGCCTGGACTACCTGCGAGGCGAGGCGGAGAAGGCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCGCCAGCGGCTCCATGGCCTACACCGCCTCGTCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCAAGGTCCGCAGGTGCCTCGCCCCACCGGGCCGGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ATGACACCAGCGGCTAGATAACCCCGCGCCGTGGGCAT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTCATAGATCGTGGTCGCCGCTGCCGGCTGGACGGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGTGTGGGACTCCTGCTCCTGCAGCTGCGGCGCCTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCCGGGCCACCGCATCGCGGCCACCCGTTTCGCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CACCGACCACGCCGTTCGTGCTGGCGAGCAAACACCG
GTTTGTAGGGTACCTATGAGGAATCGAAAC	CTTAGGCGCCGCATCCCGCCACGCCAGCCCTGCCCAG
GTTTGTAGGGTGCCTATCAGGAATCGAAAC	TCGGTGGCAACCGTGAGCTCCGCGCCGCAGCGCCGCAC
GTTTGGAGGGTGCCTATGAGGAATCGAAAC	GCGAGCGCCTCGCCCTTCAAGCCGGCGACGCTCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ATTTGGACTCTATGTCCAATCGCCAGGGGATCCAAG
GTTTGTAGGGTGCCCATGAGGAATCGAAAC	CCGGCACTCCGCCCAGTATGGGCAGGCCGTCGGCGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGGAGCCGGGACCAGAAGCGCTTCAAGGTGACGCCGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCTCCCGCAGAAAATACGGTGTGGCGTCGATCACGT
GTTTGTAGGGTACCTATGAGGAATTGAAAT

>NZ_CP048407|10|10|2562654-2563681|CRISPRCasFinder
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGCCTGGACTACCTGCGAGGCGAGGCGGAGAAGGCC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CGCGCCAGCGGCTCCATGGCCTACACCGCCTCGTCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TCAAGGTCCGCAGGTGCCTCGCCCCACCGGGCCGGT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ATGACACCAGCGGCTAGATAACCCCGCGCCGTGGGCAT
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	GTCATAGATCGTGGTCGCCGCTGCCGGCTGGACGGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	AGTGTGGGACTCCTGCTCCTGCAGCTGCGGCGCCTG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCCCGGGCCACCGCATCGCGGCCACCCGTTTCGCG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CACCGACCACGCCGTTCGTGCTGGCGAGCAAACACCG
GTTTGTAGGGTACCTATGAGGAATCGAAAC	CTTAGGCGCCGCATCCCGCCACGCCAGCCCTGCCCAG
GTTTGTAGGGTGCCTATCAGGAATCGAAAC	TCGGTGGCAACCGTGAGCTCCGCGCCGCAGCGCCGCAC
GTTTGGAGGGTGCCTATGAGGAATCGAAAC	GCGAGCGCCTCGCCCTTCAAGCCGGCGACGCTCAC
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	ATTTGGACTCTATGTCCAATCGCCAGGGGATCCAAG
GTTTGTAGGGTGCCCATGAGGAATCGAAAC	CCGGCACTCCGCCCAGTATGGGCAGGCCGTCGGCGA
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	CCGGAGCCGGGACCAGAAGCGCTTCAAGGTGACGCCGG
GTTTGTAGGGTGCCTATGAGGAATCGAAAC	TTCTCCCGCAGAAAATACGGTGTGGCGTCGATCACGT
GTTTGTAGGGTACCTATGAGGAATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048407.1\|WP_116899803.1\|2566452_2567796_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381087
NZ_CP048407.1\|WP_116899798.1\|2572910_2573108_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048407.1\|WP_116899895.1\|2548198_2549164_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	unknown	unknown	gnl\|CDD\|184320
NZ_CP048407.1\|WP_116899812.1\|2550683_2551616_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376633
NZ_CP048407.1\|WP_116899799.1\|2572388_2572892_-\|serine/threonine-protein-kinase	unknown	unknown	unknown
NZ_CP048407.1\|WP_006902987.1\|2571947_2572259_-\|EthD-family-reductase	unknown	unknown	gnl\|CDD\|131173
NZ_CP048407.1\|WP_158556002.1\|2559831_2561046_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP048407.1\|WP_116899811.1\|2552103_2553225_-\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|224662
NZ_CP048407.1\|WP_116899806.1\|2563780_2564548_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130314
NZ_CP048407.1\|WP_116899800.1\|2570327_2571731_-\|magnesium-transporter-CorA	unknown	unknown	gnl\|CDD\|213356
NZ_CP048407.1\|WP_116899804.1\|2565636_2566404_-\|DUF420-domain-containing-protein	unknown	unknown	gnl\|CDD\|377257
NZ_CP048407.1\|WP_116899815.1\|2546552_2547452_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP048407.1\|WP_116899802.1\|2567811_2568951_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP048407.1\|WP_116899814.1\|2547448_2548159_-\|phenylacetic-acid-degradation-protein-PaaB	unknown	unknown	gnl\|CDD\|368813
NZ_CP048407.1\|WP_116899805.1\|2564593_2565640_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP048407.1\|WP_116899810.1\|2554826_2556443_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP048407.1\|WP_116899807.1\|2561150_2562281_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP048407.1\|WP_116899813.1\|2549635_2550220_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061
NZ_CP048407.1\|WP_116899801.1\|2569311_2570214_+\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|236238
NZ_CP048407.1\|WP_116899809.1\|2559055_2559835_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681

Protein	Function_ID	Function_description	E-value
NZ_CP048407.1\|WP_116899803.1\|2566452_2567796_-\|response-regulator-transcription-factor	gnl\|CDD\|381087	cd17532, REC_LytTR_AlgR-like, phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR. Members of the LytTR/AlgR family of response regulators contain a REC domain and a unique LytTR DNA-binding output domain that lacks the helix-turn-helix motif and consists mostly of beta-strands. Transcriptional regulators with the LytTR-type output domains are involved in biosynthesis of extracellular polysaccharides, fimbriation, expression of exoproteins, including toxins, and quorum sensing. Included in this AlgR-like group of LytTR/AlgR family response regulators are Streptococcus agalactiae sensory transduction protein LytR, Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR, Bacillus subtilis sensory transduction protein LytT, and Escherichia coli transcriptional regulatory protein BtsR, which are members of two-component regulatory systems. LytR and LytT are components of regulatory systems that regulate genes involved in cell wall metabolism. AlgR positively regulates the algD gene, which codes for a GDP-mannose dehydrogenase, a key enzyme in the alginate biosynthesis pathway. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.68985e-54
NZ_CP048407.1\|WP_116899895.1\|2548198_2549164_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	gnl\|CDD\|184320	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional.	3.3434e-179
NZ_CP048407.1\|WP_116899812.1\|2550683_2551616_+\|hypothetical-protein	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	0.00120071
NZ_CP048407.1\|WP_006902987.1\|2571947_2572259_-\|EthD-family-reductase	gnl\|CDD\|131173	TIGR02118, TIGR02118, conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate. [Hypothetical proteins, Conserved].	1.00956e-35
NZ_CP048407.1\|WP_158556002.1\|2559831_2561046_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.74808e-47
NZ_CP048407.1\|WP_116899811.1\|2552103_2553225_-\|saccharopine-dehydrogenase	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	1.40757e-33
NZ_CP048407.1\|WP_116899806.1\|2563780_2564548_-\|ABC-transporter-permease	gnl\|CDD\|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.7357e-33
NZ_CP048407.1\|WP_116899800.1\|2570327_2571731_-\|magnesium-transporter-CorA	gnl\|CDD\|213356	cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.46199e-46
NZ_CP048407.1\|WP_116899804.1\|2565636_2566404_-\|DUF420-domain-containing-protein	gnl\|CDD\|377257	pfam04238, DUF420, Protein of unknown function (DUF420). Predicted membrane protein with four transmembrane helices.	2.96979e-43
NZ_CP048407.1\|WP_116899815.1\|2546552_2547452_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	1.2387e-74
NZ_CP048407.1\|WP_116899802.1\|2567811_2568951_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.40864e-108
NZ_CP048407.1\|WP_116899814.1\|2547448_2548159_-\|phenylacetic-acid-degradation-protein-PaaB	gnl\|CDD\|368813	pfam06243, PaaB, Phenylacetic acid degradation B. Phenylacetic acid degradation protein B (PaaB) is thought to be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.	2.82838e-21
NZ_CP048407.1\|WP_116899805.1\|2564593_2565640_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.60845e-107
NZ_CP048407.1\|WP_116899810.1\|2554826_2556443_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.72926e-33
NZ_CP048407.1\|WP_116899807.1\|2561150_2562281_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.97921e-24
NZ_CP048407.1\|WP_116899813.1\|2549635_2550220_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	2.17045e-40
NZ_CP048407.1\|WP_116899801.1\|2569311_2570214_+\|branched-chain-amino-acid-transaminase	gnl\|CDD\|236238	PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed.	0
NZ_CP048407.1\|WP_116899809.1\|2559055_2559835_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	9.24822e-82

>NZ_CP048407.1|WP_116899807.1|2561150_2562281_-|IS110-family-transposase
MPRYFGLDLHKRYVHGCEWQVDVQKGRHFRFPNTDAGWATFVQQLRADDCVALEVTGNAFTVHDLLSAYAGKVLLANPLELKRLGAGRHTDRVDAERLAKMLALGMVPAVWVPPPAVREVRYLLQYRDRLVRNRRRYLTQAKSVFQRHGLPIPRNVDPRQWLDREEVNRLPQAERVILLSALRQLETVEIEIQAIEAEIARQVADQPAVQLLLTITGVGLLTAATIWAYLGDLRRFRTAKQVTRYAGLDASVHQSGEQDHRGRISRNGSKLLRTAVVEAAHSVARHDQGPLGAFYHRKQRQIGPHKAVVALARKLLIVAWRMLLTGQPYRAAKPTLVVQKQRRLVEVAQAVTDWNAVAVALWPDRLEDRHRRRRVA
>NZ_CP048407.1|WP_158556002.1|2559831_2561046_-|IS21-family-transposase
MDILRLKAEGLSVREIARRTGLSRNTVRKYLRRPELPQYKPRPPKASKLDPFKPYLEQRMAQGVFNANRLLQELRAQGYTGGKTILKEFLRPHRPSRVPHAVVRFELPPGTQAQVDWGEFAYTDLQGRRRKVYGFVMVLSYSRAMYVEFVEQQDLSTLLRCHLHAFAALGGVPKEILYDNMKTVVLRRHGAEVDYHPRMLDFALLAGFALRACRPYRAQTKGRVERAIGYLKRHFWPAVQFTDLADLNRQVRAWVAEVANRRLHGTTGQRPADRLVEEQAHLTPLRPLAAFTSLLHEERRVSRDGYVQYAGSRYGVPWRYSGRYVTVFATSTEVEIRDGDRVIARHPPALLPGLTIPLPEQYHGLALGGPQRPEPPQGQQVVGPAVERRSLQVYEDLLRAGERR
>NZ_CP048407.1|WP_116899809.1|2559055_2559835_-|ATP-binding-protein
MITVDKARQHLQALGLKDAAEVLEARLERAAKQDVTYADFLVDLLETELAVRRRRYLDTRTKLARLPFRKTLEDFDFEAQPSIDPRQIRELATLRFLGNAENVIFLGPPGVGKTHLAVSLGLAAIDRGYGVYFTPMHRLIEDLRNAYEERRLERRMRIYLAPKLLIIDELGYLPLDKVGATVFFQLVAARYERGSIVLTSNQTFADWGEVFGDPVIATAILDRLLHHSHVINIRGESYRLREKRRSGLLRSTVDPNQDD
>NZ_CP048407.1|WP_116899810.1|2554826_2556443_+|IS1634-family-transposase
MFIRQKTFKNKDGSTRTYLQLVESVRQGGRVRQRVVATLGRLEDLQDGRLDALIENLARFSQSTWRRLEEQAERLNVRWSKQWGPALIFERLWQEAELDKAFAALLEDRQLAFDVAEAVFTMVLNRLTDPCSKRGLVRQWLQGVYRPQAEQLELHHYYRALDVLAEHKEAIEDRLFARARDLFWTEVDVVMWDCTSSYFEGRGPEGLAAYGYSRDKRPDRPQLVVGVLMTRDGYPIAHEVFPGDTADKATVATVLDALKRRFHLRRVIFVADRGMVSRPILRAIEEAGMEYIVGMPLRRHRAAEAVLSQPGRYRKVNKQLQIKQVTHQGQRYILCHNPLQAEHDRQAREAVLAHLKQRIERGQAKDLLRNRLVARYLKALPQGALVVNTDAVKRATRYDGKYLLRTNTDLEPEAVVRAYKDLWRVERAFRTLKSALDLRPMFHWTERRVRGHVMVCFLALVLESLLLRKLRQQNPEASYEDVLSDLAQLHAVAVELDGETYLTRTELVGQAYEAFKAVGLRPPARVQPMPRPATTPAG
>NZ_CP048407.1|WP_116899811.1|2552103_2553225_-|saccharopine-dehydrogenase
MRFVVFGGAGDMGSRAVRELARTPGVAQVTVADRNLEAARSVATAAAEEAAPGCRVVAEAVDILAPGAAAQLMAAHDVAMGAAGPFYLLEEPLARAAIEARRPYISLCDDHDAARRVLELDEPARRAGVTILTGLGWTPGLTNLCVRHAAQRMDRVEAAHIAWAGSSADSRGWAVVLHTMHIFSGRVTSFAAGRWEEVAAGTGAERVEFPPPLGAVTVFHVGHPEPVTLPRFLPGLQEVRLKGGLAEPALNRLAVTFGRWGLMATHRRRQRLGAVLKPLLPLLERVGAPSRPASGLVVRVRGRVGAQVAERSYRAAAPMASLTAVPLALGAFWMAQGRIEGPGVLAPEAPGGPDPEAFFQELAERGVVVDREP
>NZ_CP048407.1|WP_116899812.1|2550683_2551616_+|hypothetical-protein
MMAEPMQRLTGLQMALGIVNEGMLWLICQRLDLQPRCGRKRGQLANWLFREACRHPQLAQRLAAELTPCLLPGYRPGSPPEPQQVVSLLKRSRRKGLALGLLWAMGDTLDDPAWAAAWNRWLKDSADWRRRLEQYMALLNDQETVQVAQSIVTEAEARRDRMRQALVRMARSYREEMKRLKETIATLEEVNRQLAALRPLQNTRILVVGDPNHAGGYRQVVNRYGGDMVFADGTSRQWVRKALDGRYDAIVVVTAYGYHTTQMMIQKHAPEVPLFNARRGGLGEMERVLVTQVIPALFKRLRSLDEPASA
>NZ_CP048407.1|WP_116899813.1|2549635_2550220_-|TetR/AcrR-family-transcriptional-regulator
MGRSTARREEILTVAGELFRQKGYHATSMQDIAERLQLQRGSLYAHIESKEELLFEIVDRAADRFLDGIEQAWREGAAARDRLRRALAAHMAVIAEHRDTASVFFHEWRFLRADLRSRIQAKRDRYEARWRELIADGVARGEFRAVDPRFAALLALSAVNWAYQWYSPDGPLAPDDVAATFAELILKGLEAGSS
>NZ_CP048407.1|WP_116899895.1|2548198_2549164_-|1,2-phenylacetyl-CoA-epoxidase-subunit-A
MPPAGPAGPRDWREEERIAEFTARLERGEKVEAGDWMPSEYRRQCLRLIQTHANSEIMGALPEREWIPRAPTLRRKLALMAKVQDEVGHAQLIYRVAEDLAAPLGITREDMMDALVAGKAKFHNVFSYPAPTWADAGIIAWLVDGAALATQAALLQTSYAPYARILRRICAEEAIHLKHGEDIILTLMSGTRAQQQMVQDALNRWWRPLLHFFGPPDEMSPNLEQAMKWRIKVRTNEELRQEFLSKYVPQIRALGLQIPDPELHYDEAQGRWVYGDPDWDEFWRVVKGQGPRTEARLAIRRLSHEESRWVREALARGAAAA
>NZ_CP048407.1|WP_116899814.1|2547448_2548159_-|phenylacetic-acid-degradation-protein-PaaB
MGVTMEVYEVFGQPRRGEPYIHCGSLLAGDRRNARLLAQQLYCRRQEYVSLWIVPRSCIEAVGEGDADWWQPATDKTYRLGEGFARTRILWQRFGRGPGGGTGGGGGGVGGGGTVRAHGPSPGQDGPEAGAPAHRAGEPGAPDDVVPGAVLNRSGHVRVRRGPRRQDREGRRDPEGAAPGDEGGGARPGTGIAGSGTDAVAGRDAGKGAGPGLGMGNGSAAGTGTGARTGQGGEDR
>NZ_CP048407.1|WP_116899815.1|2546552_2547452_-|phenylacetate-CoA-oxygenase-subunit-PaaC
MNRSNRAHAMEPLPSHPAVAATSGADRGLVALLFALADDELIAGHRASEWTGVAPYLEEDVAFSSIAQDEVGHSALLYQLLADLGQGGGDPDALAFGRDPQDFRNAVLLEQPNGDWAAEIARHFLYSEYEAVLWPALARSPYEPLAAAAARIAREEAYHQAHFRQWVVELSRAGGEARERLASALARALPLAAGFFEPVDGEEQAARWRGTGLEELRRLWWAAVGQVLAEAGLAEPVLGQAGPGEPAGVEPADPGTEGGPAAPGIERGLGGRRGHHSPALTALLAEMTSVYRSDPAAEW
>NZ_CP048407.1|WP_116899806.1|2563780_2564548_-|ABC-transporter-permease
MGEIWLENRAMLQRWWFRLRREPLTWLSTLSQPVLWLLLFGHLLARMAAGDVPGGNYLAFMSAGAVVMTVFNGAINGGVELLFDRETGFLQRLLAAPIQRLSIVTSRFVYIMAVTAAQNLLIILTAYGLGVRFATGLGGIVAALGIGVLFGAGVATLSIALAFAVRRHPEFFTITAFLSLPLLFLSSALAPLDLMPGWMQVLARLNPMTYAIEATRALVLNGWDTQLVFSMLGILLAFDTVALAIAARVLRRGLA
>NZ_CP048407.1|WP_116899805.1|2564593_2565640_-|ATP-binding-cassette-domain-containing-protein
MTGAAGRTSAAASGGPGPTRVPAIEVEHLSRRFGAVEAVRDISFRVEQGEIFGLLGPNGAGKTTTIKVLLSLLKPSSGRVRILGIDVAEQPARARRCVGWVPQETAVDPLLTGRENLLLVAGMYHLPPADAARRAEELLQLVDLSAAADRVVRDYSGGMRKRLDLAMGLVHRPAVLVLDEPTLGLDIQTRRRLWQYIRTFRDRGTTILLTTHYLEEADWLCDRVAIIDEGRCLALDAPARLKARYGSEHLELRVAAGQPAEQVRQLARQLEVLEPVMEVEVDWPGSSSGVAVRIGLRVRDSLAALEPVLATCRAAGIALEGVAARPATLDDVFLHLTGRALRDGETAG
>NZ_CP048407.1|WP_116899804.1|2565636_2566404_-|DUF420-domain-containing-protein
MEPDSLDDGRCGQRPERPNSNVRPNHPCRTIIEFENHDATIHAGKAGATIDPVFVIAATNATLNAISAVVIARAYRQIRAGDVAGHRRGMLLAAGLQAVFLILYLTKSVLYGTTPFEGQAAIRLIYLVILGAHSLAASVTAPLVLVALVLGLRGRYDRHRRVARWAYPIWFFTSVTGPLTFVLLYGFGRPGYGVQALATGMGVQGLPEAVAAIGTTWGPFAGAGGIWTVPGLFLVRALAGIDPTLAALVRVVTWA
>NZ_CP048407.1|WP_116899803.1|2566452_2567796_-|response-regulator-transcription-factor
MMVPAERQAELERPDEQERAGRQRPEREGPDELERPQEFEHRPRSERQPEGRPEEDRGADVAAGPLPATGAGRGPSPAGGPGRGGAAFDQNGDPEWEWDLDGPPPGGRPIRALIVDDEYPARAELRYRLSREPGVEITGEAATAREALRLIGALDYDVVFLDIAMPGISGLELAERLKQQPGAPYVIFTTAYDEYAVKAFEARALDYLLKPYSDDRLREALSRVRERLALRGGAGPARTPATLVAGTVGTTPAGAGPASQVVPDGQVGPAAGPGATAAGSGAQAGSPAPGGVAAQAGRPGAAAAADHAAAPGAAEGAGGGPAATGGGRGRPRPRWVMGVRDEAAVPIPVEEVVYAEAENDQVFVYTATHRLPTRYTLRELEDLLPPDRFFRCHRGYIVNLRKVREISPFFNGTYNLTVVHAGQPVTIPVARSRVPELKRHFWPEQAS
>NZ_CP048407.1|WP_116899802.1|2567811_2568951_-|sensor-histidine-kinase
MTAEWTFLDHTFRIGEETLPYVRQGLNEETAQKICEIIRDIAEVDAVAITDRQTILGYAGLGCPFMVRHQPILTRATRNVLATGRLRLVASKADFECPIAGCPCPLQAAVIAPLKVRDQVVGTLKLYRTHRNDIPGMVHRLGAGIAQLLSLQMELAEAERLRELAARARLEALQAQIRPHFLFNTLNTVLMFSRTDPDRARDLLVKLAVFLRRALTVRDEFIRLEDEMEYVQMYLEIEQARFGDNLRFRVRIDPRAFGCLVPVLTIQPLVENAVVHGLAPREGGGRLTVAARVRGGHLHVVVADSGVGIPPELRQEIFRPGVGKGMGLGLSNVNQRLVGLYGEAYGLRVRSRPGRGTLVRLVVPLRRQAVQPAREEPAR
>NZ_CP048407.1|WP_116899801.1|2569311_2570214_+|branched-chain-amino-acid-transaminase
MLVYVNGRFVPKEEATVSVFDHGFLYGDGVFEGIRAYNGRVFKLDEHIQRLYESARAILLEIPIPPEEMAAAVVETCRRNDLPEAYIRVVVSRGPGDLGIDPRKCDRATVVIIADRLALYPAELYEQGMRVMTVATRRTSPAALNPRVKSLNYLNNILARLEANLAGFAEVIMLNEEGYVAECTGDNIFIVRHGRLLTPPPHLGILQGITRDTVMELARRRGIPVEEAVFTRHDVYVADECFITGTAAEVCPVIEVDGRRLGDGRPGPITRQLMADFREYARSHGTPIWNEPAAQAAAGA
>NZ_CP048407.1|WP_116899800.1|2570327_2571731_-|magnesium-transporter-CorA
MIRAWEWSERGLVEGRVPGDGQAPGQGPGGAEASGAPGRDPEGGAARVEAPGDPRAEPAAYGTTGRADGHRVVVWLDVRDPTPADWDLLRRRRALAPFLWSRLESGTAPYGVEAAGGTLVFQILLPAGRPCLVILAPGEVTTVCDGGADPWERLRERLATGPPSVPRTAPWLLYFLLEDVLHSYGDHVQRLEDRLEPVEAHFLRDEPGPGGAPAGQGDADRTGNTVPGAGASGRAGPASGETAPSPAGPAGGRTGRAPAGPAAGQTGKAPAGAASDRTRQPPVGEPRWRRVRGPRPAAVHGAGRPASGRWRDAGGVSFLSTLHRRAGQLHRRLNSLSEVLDRLLESSYNGYEGRGEGLGDRQLRPYLRALRDHAGRLSGRLENARELVVTLMNLRLALAAERTNRLILRLTVLSTIFLPLTFLTGIYGMNFKYMPELDLPWAYPALLAFMLVLGVGLWWFFKREYEW
>NZ_CP048407.1|WP_006902987.1|2571947_2572259_-|EthD-family-reductase
MVVKLVALYQHPDDPEAFDRHYREVHLPLAQRMPGLRRVEIARVTGSPGGSSPYYLMAEMYFDDAASLQAALQSAEGRAAGKDLMGFAGKIVSLHIAEVIQQD
>NZ_CP048407.1|WP_116899799.1|2572388_2572892_-|serine/threonine-protein-kinase
MGSFTRCPGCGLEVADRHLPVAGPYHASGECLELYHRLVAENLGRPDPAFVHQHCVDAYAAQHVGERTKPITSVFALAGLYLAVERGFTGRQVQKAHVELARRAGRRIAWPRLDPRPYPWALTVLDVLQAGAGEARALAIKRWAQAAWEGWAHEHEHIRDMCRRWIL
>NZ_CP048407.1|WP_116899798.1|2572910_2573108_-|hypothetical-protein
MERAERKITAGNNLRAVWVSFFNVILMRGPFLGLVGILVRARAHRLAEGGLQAALAGPEHRGSRF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048407_8	8.10\|2554338\|36\|NZ_CP048407\|PILER-CR,CRISPRCasFinder,CRT	2554338-2554373	36	MH536818	Gordonia phage Frokostdame, complete genome	42479-42514	7	0.806
NZ_CP048407_9	9.3\|2556673\|36\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556673-2556708	36	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	24698-24733	7	0.806
NZ_CP048407_9	9.15\|2557471\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557471-2557505	35	NZ_CP015989	Sphingobium sp. EP60837 plasmid pEP2, complete sequence	183045-183079	7	0.8
NZ_CP048407_9	9.7\|2556938\|36\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556938-2556973	36	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	16747-16782	8	0.778
NZ_CP048407_9	9.7\|2556938\|36\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556938-2556973	36	MH744418	Streptomyces phage JustBecause, complete genome	46236-46271	8	0.778
NZ_CP048407_9	9.7\|2556938\|36\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556938-2556973	36	MT310898	Streptomyces phage Kela, complete genome	46101-46136	8	0.778
NZ_CP048407_9	9.15\|2557471\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557471-2557505	35	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	101927-101961	8	0.771
NZ_CP048407_9	9.15\|2557471\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557471-2557505	35	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	823529-823563	8	0.771
NZ_CP048407_4	4.3\|1856114\|36\|NZ_CP048407\|PILER-CR,CRISPRCasFinder,CRT	1856114-1856149	36	MF541405	Streptomyces phage Celeste, complete genome	859-894	9	0.75
NZ_CP048407_4	4.3\|1856114\|36\|NZ_CP048407\|PILER-CR,CRISPRCasFinder,CRT	1856114-1856149	36	KX507345	Streptomyces phage Brataylor, complete genome	859-894	9	0.75
NZ_CP048407_5	5.6\|1858454\|37\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	1858454-1858490	37	NZ_CP018080	Sulfitobacter sp. AM1-D1 plasmid unnamed4, complete sequence	97462-97498	9	0.757
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	134024-134058	9	0.743
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP040764	Paracoccus sp. 2251 plasmid unnamed3, complete sequence	132849-132883	9	0.743
NZ_CP048407_9	9.19\|2557733\|36\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557733-2557768	36	NC_006912	Streptomyces sp. FQ1 plasmid pFP1, complete sequence	21592-21627	9	0.75
NZ_CP048407_9	9.19\|2557733\|36\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557733-2557768	36	NZ_CP029602	Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence	10421-10456	9	0.75
NZ_CP048407_9	9.19\|2557733\|36\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557733-2557768	36	NZ_CP029602	Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence	56893-56928	9	0.75
NZ_CP048407_9	9.32\|2558601\|39\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2558601-2558639	39	NZ_CP039899	Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence	96437-96475	9	0.769
NZ_CP048407_9	9.32\|2558601\|39\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2558601-2558639	39	NZ_CP039890	Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence	96437-96475	9	0.769
NZ_CP048407_10	10.12\|2563350\|35\|NZ_CP048407\|CRT,PILER-CR,CRISPRCasFinder	2563350-2563384	35	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1777343-1777377	9	0.743
NZ_CP048407_8	8.9\|2554273\|35\|NZ_CP048407\|PILER-CR,CRISPRCasFinder,CRT	2554273-2554307	35	NZ_CP054600	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed1, complete sequence	33589-33623	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	175279-175313	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	194897-194931	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	236681-236715	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	789712-789746	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	175457-175491	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	195413-195447	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	236749-236783	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	172638-172672	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	195413-195447	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	195413-195447	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	172638-172672	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	195413-195447	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	172638-172672	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	172638-172672	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	195413-195447	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	172638-172672	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	172638-172672	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	456748-456782	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	238224-238258	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	138516-138550	10	0.714
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	210792-210826	10	0.714
NZ_CP048407_9	9.15\|2557471\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557471-2557505	35	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	96214-96248	10	0.714
NZ_CP048407_9	9.15\|2557471\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557471-2557505	35	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	612390-612424	10	0.714
NZ_CP048407_9	9.15\|2557471\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557471-2557505	35	MN234176	Mycobacterium phage Yuna, complete genome	35250-35284	10	0.714
NZ_CP048407_9	9.15\|2557471\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557471-2557505	35	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	79414-79448	10	0.714
NZ_CP048407_9	9.24\|2558068\|36\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2558068-2558103	36	NC_010470	Leuconostoc citreum KM20 plasmid pLCK1, complete sequence	36934-36969	10	0.722
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	124510-124544	11	0.686
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	332137-332171	11	0.686
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	175450-175484	11	0.686
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	173024-173058	11	0.686
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	176594-176628	11	0.686
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1757147-1757181	11	0.686
NZ_CP048407_9	9.6\|2556873\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2556873-2556907	35	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	918088-918122	11	0.686
NZ_CP048407_9	9.15\|2557471\|35\|NZ_CP048407\|CRISPRCasFinder,CRT,PILER-CR	2557471-2557505	35	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	673853-673887	11	0.686
NZ_CP048407_10	10.10\|2563215\|37\|NZ_CP048407\|CRT,PILER-CR,CRISPRCasFinder	2563215-2563251	37	NZ_CP034347	Roseovarius sp. MME-070 plasmid pMME07001, complete sequence	32317-32353	11	0.703

1. spacer 8.10|2554338|36|NZ_CP048407|PILER-CR,CRISPRCasFinder,CRT matches to MH536818 (Gordonia phage Frokostdame, complete genome) position: , mismatch: 7, identity: 0.806

-gcggcgatcagtccatcgacatcgaccaggcgcggc	CRISPR spacer
agccgagg-cagtccatcgccatcaaccaggcgcgga	Protospacer
 ** * *. ********** ****.***********

2. spacer 9.3|2556673|36|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 7, identity: 0.806

gcgcagatggcggcccgggaaagtgagggcagcggc-	CRISPR spacer
gcgcagatggcggcccggcagagtga-cgcgatggcg	Protospacer
****************** *.*****  **...***

3. spacer 9.15|2557471|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015989 (Sphingobium sp. EP60837 plasmid pEP2, complete sequence) position: , mismatch: 7, identity: 0.8

tacctgctggacggcgacggcgagccgggcgcgga	CRISPR spacer
gatctgctggacggcgacgccgagccggtcgaagg	Protospacer
 *.**************** ******** ** .*.

4. spacer 9.7|2556938|36|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.778

------cgccctgggcggcgacgcgcaccgactcgcccagcg	CRISPR spacer
gcgtggcgc------cggcgacgcgcaccgcctcgaccagcg	Protospacer
      ***      *************** **** ******

5. spacer 9.7|2556938|36|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 8, identity: 0.778

cgccctgggcggcgacgcgcaccgactcgcccagcg-	CRISPR spacer
aggcgtgggcggagacgcgcaccgacgcg-ccgtcgt	Protospacer
 * * ******* ************* ** **. **

6. spacer 9.7|2556938|36|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 8, identity: 0.778

cgccctgggcggcgacgcgcaccgactcgcccagcg-	CRISPR spacer
aggcgtgggcggagacgcgcaccgacgcg-ccgtcgt	Protospacer
 * * ******* ************* ** **. **

7. spacer 9.15|2557471|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.771

tacctgctggacggcgacggcgagccgggcgcgga	CRISPR spacer
cgcctcggtgacggcgacggcgagcggggcgtgga	Protospacer
..***    **************** *****.***

8. spacer 9.15|2557471|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.771

tacctgctggacggcgacggcgagccgggcgcgga	CRISPR spacer
gagctgctggacggcgccggccagccggtgccgaa	Protospacer
 * ************* **** ******   **.*

9. spacer 4.3|1856114|36|NZ_CP048407|PILER-CR,CRISPRCasFinder,CRT matches to MF541405 (Streptomyces phage Celeste, complete genome) position: , mismatch: 9, identity: 0.75

ttgtgcacgcccgcgacgatgtgctcgccctcgtgg	CRISPR spacer
tggttgtcgcccgcgacgatgtggtcgacctcggtc	Protospacer
* **   **************** *** *****

10. spacer 4.3|1856114|36|NZ_CP048407|PILER-CR,CRISPRCasFinder,CRT matches to KX507345 (Streptomyces phage Brataylor, complete genome) position: , mismatch: 9, identity: 0.75

ttgtgcacgcccgcgacgatgtgctcgccctcgtgg	CRISPR spacer
tggttgtcgcccgcgacgatgtggtcgacctcggtc	Protospacer
* **   **************** *** *****

11. spacer 5.6|1858454|37|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018080 (Sulfitobacter sp. AM1-D1 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.757

cgcaggtcgatgagcgtatctcgcagcgactcattct	CRISPR spacer
cgcaggtcggtgagcgtatcgcgcagaaggccgtcct	Protospacer
*********.********** ***** .. .*.*.**

12. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gactgggccgaggacgtgctcgccctgatgcaccg	Protospacer
  *.*******************.***.**.  .*

13. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040764 (Paracoccus sp. 2251 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.743

ttccgggccgaggacgtgctcgctctggt-gtcgtg	CRISPR spacer
gaccgggccgaggacgtgcccgcgctgttcaccgc-	Protospacer
  *****************.*** *** * ..**.

14. spacer 9.19|2557733|36|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NC_006912 (Streptomyces sp. FQ1 plasmid pFP1, complete sequence) position: , mismatch: 9, identity: 0.75

gatgcggtgcggcgcgtactcgccgctctcgatctc	CRISPR spacer
gcggtcgcccggcgcgtacttgccgctcttgatctg	Protospacer
*  *. *. ***********.********.*****

15. spacer 9.19|2557733|36|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029602 (Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

gatgcggtgcggcgcgtactcgccgctctcgatctc	CRISPR spacer
gcggtcgcccggcgcgtacttgccgctcttgatctg	Protospacer
*  *. *. ***********.********.*****

16. spacer 9.19|2557733|36|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029602 (Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

gatgcggtgcggcgcgtactcgccgctctcgatctc	CRISPR spacer
gcggtcgcccggcgcgtacttgccgctcttgatctg	Protospacer
*  *. *. ***********.********.*****

17. spacer 9.32|2558601|39|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039899 (Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence) position: , mismatch: 9, identity: 0.769

cacgtcgcaggctggccgaactcgaagcagaggcgcggc-	CRISPR spacer
tcgggcgctggctggccgaactcgaagcagaagc-cgatg	Protospacer
.  * *** **********************.** **..

18. spacer 9.32|2558601|39|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039890 (Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence) position: , mismatch: 9, identity: 0.769

cacgtcgcaggctggccgaactcgaagcagaggcgcggc-	CRISPR spacer
tcgggcgctggctggccgaactcgaagcagaagc-cgatg	Protospacer
.  * *** **********************.** **..

19. spacer 10.12|2563350|35|NZ_CP048407|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.743

gcgagcgcctcgcccttcaagccggcgacgctcac-	CRISPR spacer
atcggcgcctcgccctcgaagccggcgac-cgcgcg	Protospacer
.. .************. *********** * *.*

20. spacer 8.9|2554273|35|NZ_CP048407|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054600 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

gcccggatgcggtcatcgagcggctttggtcgcac	CRISPR spacer
ccattctggcggtcatggtgcggctttggtcgccc	Protospacer
 * .    ******** * ************** *

21. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

22. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

23. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

24. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

25. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

26. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

27. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

28. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

29. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

30. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

31. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

32. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

33. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

34. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

35. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

36. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

37. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

38. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

39. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

40. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

41. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 10, identity: 0.714

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtgctcgctctggtggaagc	Protospacer
 .*  ******.******************  .

42. spacer 9.15|2557471|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.714

tacctgctggacggcgacggcgagccgggcgcgga	CRISPR spacer
cgtgccctggacggcgatggcgagctgggcggcga	Protospacer
... . ***********.*******.*****  **

43. spacer 9.15|2557471|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 10, identity: 0.714

tacctgctggacggcgacggcgagccgggcgcgga	CRISPR spacer
ggcctgctgaacggcgtcggcgagccgtcggcctc	Protospacer
 .*******.****** **********   **

44. spacer 9.15|2557471|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to MN234176 (Mycobacterium phage Yuna, complete genome) position: , mismatch: 10, identity: 0.714

tacctgctggacggcgacggcgagccgggcgcgga	CRISPR spacer
gatcgaggtcacggcgacggcgagcctggcgcaga	Protospacer
 *.* .    **************** *****.**

45. spacer 9.15|2557471|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.714

tacctgctggacggcgacggcgagccgggcgcgga	CRISPR spacer
ggcctgctgaacggcgtcggcgagccgtcggcctc	Protospacer
 .*******.****** **********   **

46. spacer 9.24|2558068|36|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NC_010470 (Leuconostoc citreum KM20 plasmid pLCK1, complete sequence) position: , mismatch: 10, identity: 0.722

tctcctcatcaatctcaaaaatttcaa-------caactatat	CRISPR spacer
actcctcttcgatctcaaaaatttcaaagtaaggca-------	Protospacer
 ****** **.****************       **

47. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 11, identity: 0.686

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtactcgctctggtggaagc	Protospacer
 .*  ******.*****.************  .

48. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtactcgctctggtggaagc	Protospacer
 .*  ******.*****.************  .

49. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtactcgctctggtggaagc	Protospacer
 .*  ******.*****.************  .

50. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtactcgctctggtggaagc	Protospacer
 .*  ******.*****.************  .

51. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtactcgctctggtggaagc	Protospacer
 .*  ******.*****.************  .

52. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtactcgctctggtggaagc	Protospacer
 .*  ******.*****.************  .

53. spacer 9.6|2556873|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 11, identity: 0.686

ttccgggccgaggacgtgctcgctctggtgtcgtg	CRISPR spacer
gccacggccgaagacgtactcgctctggtggaagc	Protospacer
 .*  ******.*****.************  .

54. spacer 9.15|2557471|35|NZ_CP048407|CRISPRCasFinder,CRT,PILER-CR matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 11, identity: 0.686

tacctgctggacggcgacggcgagccgggcgcgga	CRISPR spacer
cgcgccctggtcggcggcggcgagccgggcgatcg	Protospacer
..* . **** *****.**************   .

55. spacer 10.10|2563215|37|NZ_CP048407|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034347 (Roseovarius sp. MME-070 plasmid pMME07001, complete sequence) position: , mismatch: 11, identity: 0.703

cttaggcgccgcatcccgccacgccagccctgcccag	CRISPR spacer
tgctggcgccgcatcacgccacgcccgccctctattg	Protospacer
. . *********** ********* ***** . . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1921297 : 1928984

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_116900307.1\|1921297_1922884_+	HAMP domain-containing histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	1.7e-12	27.9
WP_006903521.1\|1922880_1923150_+	membrane protein	NA	NA	NA	NA
WP_116900306.1\|1923300_1924077_+	response regulator transcription factor	W8CYM9	Bacillus_phage	6.4e-45	39.8
WP_116900305.1\|1924107_1925910_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.1e-47	27.3
WP_116900304.1\|1926189_1927122_+	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	1.1e-32	30.1
WP_116900303.1\|1927237_1927639_-	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	1.4e-08	41.2
WP_116900347.1\|1927635_1927878_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_116900302.1\|1928150_1928984_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.8e-30	32.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048407

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection