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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039631 Pseudomonas veronii strain Pvy chromosome, complete genome 4 crisprs csa3,DinG,DEDDh,PrimPol,cas3,RT,WYL 0 0 11 0
NZ_CP039632 Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. NZ_CP039631
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039631_1 198653-198747 Orphan NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039631_2 963777-963876 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039631_3 973839-973915 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039631_4 3592997-3593085 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 938 : 53471 56 Pseudomonas_phage(20.0%) terminase,transposase,lysis,protease,holin,portal NA
DBSCAN-SWA_2 100227 : 108897 12 uncultured_Caudovirales_phage(87.5%) NA NA
DBSCAN-SWA_3 215231 : 221497 8 Bacillus_phage(28.57%) NA NA
DBSCAN-SWA_4 296050 : 354456 58 uncultured_Caudovirales_phage(24.0%) tail,holin,tRNA,plate NA
DBSCAN-SWA_5 1719456 : 1796540 54 Natrialba_phage(14.29%) protease,tRNA,transposase NA
DBSCAN-SWA_6 2234672 : 2281246 39 Catovirus(16.67%) transposase,holin NA
DBSCAN-SWA_7 2458962 : 2467004 9 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_8 3708033 : 3736684 37 Pseudomonas_phage(35.71%) tail,integrase,lysis,plate attL 3707977:3707996|attR 3736821:3736840
DBSCAN-SWA_9 4087307 : 4128590 45 Pseudomonas_phage(69.57%) tail,transposase,integrase,head,protease attL 4106705:4106764|attR 4127048:4127109
DBSCAN-SWA_10 4894952 : 4950596 80 Pseudomonas_phage(43.75%) tail,terminase,integrase,plate,holin,coat attL 4894771:4894822|attR 4950038:4950051
DBSCAN-SWA_11 7070290 : 7102818 31 Emiliania_huxleyi_virus(15.79%) terminase,transposase,lysis,holin,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP039632
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31311 : 78192 40 Pseudomonas_phage(27.27%) integrase,transposase attL 29761:29777|attR 70499:70515
DBSCAN-SWA_2 82012 : 137806 51 Micromonas_sp._RCC1109_virus(18.18%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage