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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039514 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 plasmid p7102_58-5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039511 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 plasmid p7102_58-2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039515 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 plasmid p7102_58-4, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039513 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 plasmid p7102_58-6, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039510 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 plasmid p7102_58-3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039509 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 chromosome, complete genome 6 crisprs PD-DExK,csa3,WYL,cas3,DEDDh,DinG,RT 1 19 8 0
NZ_CP039512 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 plasmid p7102_58-1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP039509
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039509_1 84565-84659 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039509_2 605929-606029 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039509_3 630751-630908 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039509_4 1065461-1066468 Orphan I-E
16 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039509_5 1075202-1076941 Orphan I-E
28 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039509_6 1523238-1523313 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP039509_3 3.1|630801|58|NZ_CP039509|CRISPRCasFinder 630801-630858 58 NZ_CP039509.1 631028-631085 2 0.966

1. spacer 3.1|630801|58|NZ_CP039509|CRISPRCasFinder matches to position: 631028-631085, mismatch: 2, identity: 0.966

gcaggatgaatgactgtccacgacgctatatccaaaagaaagcggcttatcggtcagt	CRISPR spacer
gcaggatgaatgactgtccacgacactatacccaaaagaaagcggcttatcggtcagt	Protospacer
************************.*****.***************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 MT774487 Salmonella phage MG40, complete genome 22969-23002 0 1.0
NZ_CP039509_4 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT 1065673-1065705 33 MT774487 Salmonella phage MG40, complete genome 22969-23001 0 1.0
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 MH370364 Salmonella phage S107, complete genome 32314-32347 1 0.971
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 MH370382 Salmonella phage S135, complete genome 32314-32347 1 0.971
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 MH370383 Salmonella phage S137, complete genome 32314-32347 1 0.971
NZ_CP039509_4 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT 1065673-1065705 33 MH370364 Salmonella phage S107, complete genome 32314-32346 1 0.97
NZ_CP039509_4 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT 1065673-1065705 33 MH370382 Salmonella phage S135, complete genome 32314-32346 1 0.97
NZ_CP039509_4 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT 1065673-1065705 33 MH370383 Salmonella phage S137, complete genome 32314-32346 1 0.97
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 NZ_CP008900 Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-d4a, complete sequence 56750-56781 1 0.969
NZ_CP039509_4 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT 1065673-1065705 33 MG969415 UNVERIFIED: Salmonella phage GE_vB_TR, complete genome 18915-18947 2 0.939
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 NZ_KY978631 Klebsiella pneumoniae strain 447 plasmid p447-IMP, complete sequence 48648-48679 2 0.938
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 CP045557 Citrobacter sp. S39 plasmid pS39-2, complete sequence 130568-130599 2 0.938
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 MG969415 UNVERIFIED: Salmonella phage GE_vB_TR, complete genome 18914-18947 3 0.912
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 NZ_CP022136 Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251 plasmid unnamed1, complete sequence 31095-31126 3 0.906
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 NZ_CP029996 Salmonella enterica subsp. salamae strain SA20053897 plasmid pSA20053897.1, complete sequence 61659-61690 3 0.906
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 NZ_CP022036 Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 plasmid punamed1, complete sequence 14331-14362 3 0.906
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 NC_019335 Salmonella sp. 14 plasmid p14-95A, complete sequence 76776-76807 3 0.906
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 NC_019336 Salmonella sp. 40 plasmid p40-95A, complete sequence 61523-61554 3 0.906
NZ_CP039509_4 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT 1065673-1065705 33 JQ182733 Enterobacterial phage mEp213, complete genome 26443-26475 7 0.788
NZ_CP039509_4 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT 1065673-1065705 33 NC_019706 Enterobacteria phage mEp043 c-1, complete genome 26443-26475 7 0.788
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NZ_CP004876 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence 110177-110208 7 0.781
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NC_017203 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence 145494-145525 7 0.781
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NC_020384 Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence 149719-149750 7 0.781
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NZ_CP011350 Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence 737246-737277 7 0.781
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NZ_CP015152 Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence 145797-145828 7 0.781
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NZ_CP013056 Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence 56785-56816 7 0.781
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NZ_CP004861 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence 108481-108512 7 0.781
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NZ_AP014866 Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence 36899-36930 7 0.781
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NZ_CP010091 Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence 102754-102785 7 0.781
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 JQ182733 Enterobacterial phage mEp213, complete genome 26443-26476 8 0.765
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 NC_019706 Enterobacteria phage mEp043 c-1, complete genome 26443-26476 8 0.765
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 NC_014839 Pantoea sp. At-9b plasmid pPAT9B02, complete sequence 302363-302396 8 0.765
NZ_CP039509_4 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT 1065673-1065705 33 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 146596-146628 8 0.758
NZ_CP039509_5 5.23|1076575|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076575-1076606 32 MK764442 Flavobacterium phage FPSV-S1, complete genome 13559-13590 8 0.75
NZ_CP039509_5 5.23|1076575|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076575-1076606 32 MK764448 Flavobacterium phage FPSV-S27, complete genome 11629-11660 8 0.75
NZ_CP039509_5 5.23|1076575|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076575-1076606 32 MH992122 UNVERIFIED: Escherichia phage OLB35, complete genome 88700-88731 8 0.75
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 NZ_CP014853 Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence 320018-320049 8 0.75
NZ_CP039509_5 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076697-1076728 32 CP046513 Bacillus cereus strain JHU plasmid p2, complete sequence 246623-246654 8 0.75
NZ_CP039509_4 4.4|1065672|34|NZ_CP039509|PILER-CR 1065672-1065705 34 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 146596-146629 9 0.735
NZ_CP039509_4 4.17|1065551|32|NZ_CP039509|CRISPRCasFinder,CRT 1065551-1065582 32 JQ067089 Pseudomonas phage PaMx28, partial genome 8007-8038 9 0.719
NZ_CP039509_4 4.18|1065612|32|NZ_CP039509|CRISPRCasFinder,CRT 1065612-1065643 32 NZ_CP041249 Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence 52808-52839 9 0.719
NZ_CP039509_4 4.25|1066041|32|NZ_CP039509|CRISPRCasFinder,CRT 1066041-1066072 32 MT234670 Pseudanabaena phage PA-SR01, complete genome 117329-117360 9 0.719
NZ_CP039509_4 4.26|1066102|32|NZ_CP039509|CRISPRCasFinder,CRT 1066102-1066133 32 NZ_CP021369 Acidovorax carolinensis strain P4 plasmid pACP4.3, complete sequence 3549-3580 9 0.719
NZ_CP039509_4 4.26|1066102|32|NZ_CP039509|CRISPRCasFinder,CRT 1066102-1066133 32 NZ_CP021369 Acidovorax carolinensis strain P4 plasmid pACP4.3, complete sequence 110006-110037 9 0.719
NZ_CP039509_5 5.5|1075475|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075475-1075506 32 NZ_CP045296 Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence 821604-821635 9 0.719
NZ_CP039509_5 5.5|1075475|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075475-1075506 32 NC_011273 Mycobacterium phage Myrna, complete genome 12501-12532 9 0.719
NZ_CP039509_5 5.18|1076270|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076270-1076301 32 MF140428 Mycobacterium phage Slimphazie, complete genome 51491-51522 9 0.719
NZ_CP039509_5 5.18|1076270|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076270-1076301 32 MN234231 Mycobacterium phage Rapunzel97, complete genome 51491-51522 9 0.719
NZ_CP039509_5 5.18|1076270|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076270-1076301 32 NC_023747 Mycobacterium phage BarrelRoll, complete genome 51476-51507 9 0.719
NZ_CP039509_5 5.18|1076270|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076270-1076301 32 MH513977 Mycobacterium phage Mynx, complete genome 51819-51850 9 0.719
NZ_CP039509_5 5.20|1076392|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076392-1076423 32 MN693685 Marine virus AFVG_250M1024, complete genome 1215-1246 9 0.719
NZ_CP039509_5 5.20|1076392|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076392-1076423 32 MN693729 Marine virus AFVG_250M1023, complete genome 35847-35878 9 0.719
NZ_CP039509_5 5.21|1076453|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076453-1076484 32 MN693367 Marine virus AFVG_25M492, complete genome 22092-22123 9 0.719
NZ_CP039509_5 5.22|1076514|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076514-1076545 32 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 260799-260830 9 0.719
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP049731 Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence 84065-84096 9 0.719
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP053206 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence 82149-82180 9 0.719
NZ_CP039509_4 4.3|1065611|33|NZ_CP039509|PILER-CR 1065611-1065643 33 NZ_CP041249 Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence 52807-52839 10 0.697
NZ_CP039509_5 5.5|1075475|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075475-1075506 32 NC_010699 Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence 31113-31144 10 0.688
NZ_CP039509_5 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075903-1075934 32 NZ_CP016890 Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence 343111-343142 10 0.688
NZ_CP039509_5 5.20|1076392|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076392-1076423 32 NZ_CP021372 Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence 396894-396925 10 0.688
NZ_CP039509_5 5.20|1076392|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076392-1076423 32 NZ_CP047220 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence 24674-24705 10 0.688
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP050081 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence 83660-83691 10 0.688
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP050098 Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence 90366-90397 10 0.688
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP053440 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence 91005-91036 10 0.688
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP018229 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence 875600-875631 10 0.688
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP048281 Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence 111854-111885 10 0.688
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 291369-291400 10 0.688
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 34828-34859 10 0.688
NZ_CP039509_5 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076636-1076667 32 NZ_CP022565 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence 595777-595808 10 0.688
NZ_CP039509_5 5.28|1076881|32|NZ_CP039509|CRISPRCasFinder,CRT 1076881-1076912 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
NZ_CP039509_5 5.28|1076881|32|NZ_CP039509|CRISPRCasFinder,CRT 1076881-1076912 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
NZ_CP039509_5 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075536-1075567 32 NZ_CP032324 Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence 238200-238231 11 0.656
NZ_CP039509_5 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075536-1075567 32 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 77505-77536 11 0.656
NZ_CP039509_5 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075536-1075567 32 NZ_CP007797 Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence 389749-389780 11 0.656
NZ_CP039509_5 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075536-1075567 32 NZ_CP032343 Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence 156234-156265 11 0.656
NZ_CP039509_5 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1075536-1075567 32 NZ_CP012917 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence 572348-572379 11 0.656
NZ_CP039509_5 5.16|1076148|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT 1076148-1076179 32 NZ_CP049817 Monaibacterium sp. ALG8 plasmid unnamed6, complete sequence 60899-60930 11 0.656

1. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 0, identity: 1.0

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
gtcacaaatgcgaggagtcagcccaatgagcaac	Protospacer
**********************************

2. spacer 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 0, identity: 1.0

tcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
tcacaaatgcgaggagtcagcccaatgagcaac	Protospacer
*********************************

3. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 1, identity: 0.971

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
gtcacaaatgcgaggagtcagaccaatgagcaac	Protospacer
********************* ************

4. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 1, identity: 0.971

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
gtcacaaatgcgaggagtcagaccaatgagcaac	Protospacer
********************* ************

5. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 1, identity: 0.971

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
gtcacaaatgcgaggagtcagaccaatgagcaac	Protospacer
********************* ************

6. spacer 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 1, identity: 0.97

tcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
tcacaaatgcgaggagtcagaccaatgagcaac	Protospacer
******************** ************

7. spacer 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 1, identity: 0.97

tcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
tcacaaatgcgaggagtcagaccaatgagcaac	Protospacer
******************** ************

8. spacer 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 1, identity: 0.97

tcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
tcacaaatgcgaggagtcagaccaatgagcaac	Protospacer
******************** ************

9. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008900 (Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-d4a, complete sequence) position: , mismatch: 1, identity: 0.969

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
gctacagtaaacgtgaatgtgcgtattgacgc	Protospacer
*****.**************************

10. spacer 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT matches to MG969415 (UNVERIFIED: Salmonella phage GE_vB_TR, complete genome) position: , mismatch: 2, identity: 0.939

tcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
tcacaaatgcgaggggccagcccaatgagcaac	Protospacer
**************.*.****************

11. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY978631 (Klebsiella pneumoniae strain 447 plasmid p447-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
gctaccgtaaacgtgaatgtgcgtattgaagc	Protospacer
***** *********************** **

12. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to CP045557 (Citrobacter sp. S39 plasmid pS39-2, complete sequence) position: , mismatch: 2, identity: 0.938

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
gctaccgtaaacgtgaacgtgcgtattgacgc	Protospacer
***** ***********.**************

13. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to MG969415 (UNVERIFIED: Salmonella phage GE_vB_TR, complete genome) position: , mismatch: 3, identity: 0.912

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
atcacaaatgcgaggggccagcccaatgagcaac	Protospacer
.**************.*.****************

14. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022136 (Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.906

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
gctacagtaaatgtgaatgtgcgtattgacac	Protospacer
*****.*****.******************.*

15. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029996 (Salmonella enterica subsp. salamae strain SA20053897 plasmid pSA20053897.1, complete sequence) position: , mismatch: 3, identity: 0.906

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
gctacagtaaatgtgaatgtgcgtattgacac	Protospacer
*****.*****.******************.*

16. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022036 (Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 plasmid punamed1, complete sequence) position: , mismatch: 3, identity: 0.906

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
gctacagtaaatgtgaatgtgcgtattgacac	Protospacer
*****.*****.******************.*

17. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NC_019335 (Salmonella sp. 14 plasmid p14-95A, complete sequence) position: , mismatch: 3, identity: 0.906

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
gctacagtaaatgtgaatgtgcgtattgacac	Protospacer
*****.*****.******************.*

18. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NC_019336 (Salmonella sp. 40 plasmid p40-95A, complete sequence) position: , mismatch: 3, identity: 0.906

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
gctacagtaaatgtgaatgtgcgtattgacac	Protospacer
*****.*****.******************.*

19. spacer 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT matches to JQ182733 (Enterobacterial phage mEp213, complete genome) position: , mismatch: 7, identity: 0.788

tcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
gcagattcgcaaggaggcagcccaatgagcaac	Protospacer
 ** *  .**.***** ****************

20. spacer 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT matches to NC_019706 (Enterobacteria phage mEp043 c-1, complete genome) position: , mismatch: 7, identity: 0.788

tcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
gcagattcgcaaggaggcagcccaatgagcaac	Protospacer
 ** *  .**.***** ****************

21. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

22. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

23. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

24. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

25. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015152 (Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

26. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013056 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

27. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

28. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014866 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

29. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 7, identity: 0.781

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
tgaaaaactattcccgactaaaaacggaaagt	Protospacer
*.*** . ********. *************.

30. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to JQ182733 (Enterobacterial phage mEp213, complete genome) position: , mismatch: 8, identity: 0.765

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
agcagattcgcaaggaggcagcccaatgagcaac	Protospacer
. ** *  .**.***** ****************

31. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to NC_019706 (Enterobacteria phage mEp043 c-1, complete genome) position: , mismatch: 8, identity: 0.765

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
agcagattcgcaaggaggcagcccaatgagcaac	Protospacer
. ** *  .**.***** ****************

32. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to NC_014839 (Pantoea sp. At-9b plasmid pPAT9B02, complete sequence) position: , mismatch: 8, identity: 0.765

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
gtcacaagtgcgaagagtcagccccccgatgagc	Protospacer
*******.*****.**********  .**  *.*

33. spacer 4.19|1065673|33|NZ_CP039509|CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.758

tcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
cgagacatgcgaggaggcagcgcaatgagcgat	Protospacer
. * * ********** **** ********.*.

34. spacer 5.23|1076575|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MK764442 (Flavobacterium phage FPSV-S1, complete genome) position: , mismatch: 8, identity: 0.75

gatgacccgtatacgttcaaaatcaaaatcta---	CRISPR spacer
tgagagccgaatacgttcaaaatcaaa---taaat	Protospacer
 . ** *** *****************   **   

35. spacer 5.23|1076575|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MK764448 (Flavobacterium phage FPSV-S27, complete genome) position: , mismatch: 8, identity: 0.75

gatgacccgtatacgttcaaaatcaaaatcta---	CRISPR spacer
tgagagccgaatacgttcaaaatcaaa---taaat	Protospacer
 . ** *** *****************   **   

36. spacer 5.23|1076575|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MH992122 (UNVERIFIED: Escherichia phage OLB35, complete genome) position: , mismatch: 8, identity: 0.75

gatgacccgtatacgttcaaaatcaa-aatcta	CRISPR spacer
ccggacccttatacgttcaaaataaatgatat-	Protospacer
   ***** ************** ** .** * 

37. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
cgaaaaactattcccgactaaaaacggaaagt	Protospacer
..*** . ********. *************.

38. spacer 5.25|1076697|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacgatattcccggataaaaacggaaagc	CRISPR spacer
cgaaaaactattcccgactaaaaacggaaagt	Protospacer
..*** . ********. *************.

39. spacer 4.4|1065672|34|NZ_CP039509|PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 9, identity: 0.735

gtcacaaatgcgaggagtcagcccaatgagcaac	CRISPR spacer
acgagacatgcgaggaggcagcgcaatgagcgat	Protospacer
.. * * ********** **** ********.*.

40. spacer 4.17|1065551|32|NZ_CP039509|CRISPRCasFinder,CRT matches to JQ067089 (Pseudomonas phage PaMx28, partial genome) position: , mismatch: 9, identity: 0.719

agagcagcttgctcactaccggggcagaaggg	CRISPR spacer
agagcagcttgcttacttccgggaaaagaacc	Protospacer
*************.*** *****. *..*.  

41. spacer 4.18|1065612|32|NZ_CP039509|CRISPRCasFinder,CRT matches to NZ_CP041249 (Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tatttggacaatcaggtcgaggttcagtatga	CRISPR spacer
ctgttgggcaatcaggtcgacgttcagtcgat	Protospacer
.  ****.************ *******  . 

42. spacer 4.25|1066041|32|NZ_CP039509|CRISPRCasFinder,CRT matches to MT234670 (Pseudanabaena phage PA-SR01, complete genome) position: , mismatch: 9, identity: 0.719

agagattgattaaatgaacagtaacaaactaa	CRISPR spacer
gttgcaagcttagatgaacagtaccaaactaa	Protospacer
.  *   * ***.********** ********

43. spacer 4.26|1066102|32|NZ_CP039509|CRISPRCasFinder,CRT matches to NZ_CP021369 (Acidovorax carolinensis strain P4 plasmid pACP4.3, complete sequence) position: , mismatch: 9, identity: 0.719

gcgcgtcagcgtggattaactcaacagcgctc	CRISPR spacer
caacgtcagcatggatgaactcaacaacatcc	Protospacer
  .*******.***** *********.*...*

44. spacer 4.26|1066102|32|NZ_CP039509|CRISPRCasFinder,CRT matches to NZ_CP021369 (Acidovorax carolinensis strain P4 plasmid pACP4.3, complete sequence) position: , mismatch: 9, identity: 0.719

gcgcgtcagcgtggattaactcaacagcgctc	CRISPR spacer
caacgtcagcatggatgaactcaacaacatcc	Protospacer
  .*******.***** *********.*...*

45. spacer 5.5|1075475|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
ttctggatatcatgctgcctgagttggatgga	Protospacer
* **********  ***********..* .  

46. spacer 5.5|1075475|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NC_011273 (Mycobacterium phage Myrna, complete genome) position: , mismatch: 9, identity: 0.719

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
tcctggagatcatcctgcctgagttcatcggt	Protospacer
* ***** **** ************ *  . .

47. spacer 5.18|1076270|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MF140428 (Mycobacterium phage Slimphazie, complete genome) position: , mismatch: 9, identity: 0.719

cacagagttaaacgccgctgcagcgctgttta	CRISPR spacer
ccgcaagttcaacgccgctgccgcgctgaaca	Protospacer
*   .**** *********** ******  .*

48. spacer 5.18|1076270|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MN234231 (Mycobacterium phage Rapunzel97, complete genome) position: , mismatch: 9, identity: 0.719

cacagagttaaacgccgctgcagcgctgttta	CRISPR spacer
ccgcaagttcaacgccgctgccgcgctgaaca	Protospacer
*   .**** *********** ******  .*

49. spacer 5.18|1076270|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NC_023747 (Mycobacterium phage BarrelRoll, complete genome) position: , mismatch: 9, identity: 0.719

cacagagttaaacgccgctgcagcgctgttta	CRISPR spacer
ccgcaagttcaacgccgctgccgcgctgaaca	Protospacer
*   .**** *********** ******  .*

50. spacer 5.18|1076270|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MH513977 (Mycobacterium phage Mynx, complete genome) position: , mismatch: 9, identity: 0.719

cacagagttaaacgccgctgcagcgctgttta	CRISPR spacer
ccgcaagttcaacgccgctgccgcgctgaaca	Protospacer
*   .**** *********** ******  .*

51. spacer 5.20|1076392|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MN693685 (Marine virus AFVG_250M1024, complete genome) position: , mismatch: 9, identity: 0.719

ttccatattcaggatcatatccgcacgataac	CRISPR spacer
ttccatattcaggaacctatccgaccatccag	Protospacer
************** * ******  *. . * 

52. spacer 5.20|1076392|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MN693729 (Marine virus AFVG_250M1023, complete genome) position: , mismatch: 9, identity: 0.719

ttccatattcaggatcatatccgcacgataac	CRISPR spacer
ttccatattcaggaacctatccgaccatccag	Protospacer
************** * ******  *. . * 

53. spacer 5.21|1076453|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to MN693367 (Marine virus AFVG_25M492, complete genome) position: , mismatch: 9, identity: 0.719

cctgacgccaacggaaacgtgaaagtctcaac	CRISPR spacer
cgtgacgccaacggaaacgtcgaaggcgtttt	Protospacer
* ****************** .*** * .  .

54. spacer 5.22|1076514|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.719

tgttcccccaaggttcaaaaattcaatatgag	CRISPR spacer
atttttagcaatgttcataaattcaatatgat	Protospacer
  **..  *** ***** ************* 

55. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 9, identity: 0.719

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaacgt	Protospacer
.****** *********** ****. * .*. 

56. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 9, identity: 0.719

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaacgt	Protospacer
.****** *********** ****. * .*. 

57. spacer 4.3|1065611|33|NZ_CP039509|PILER-CR matches to NZ_CP041249 (Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

gtatttggacaatcaggtcgaggttcagtatga	CRISPR spacer
actgttgggcaatcaggtcgacgttcagtcgat	Protospacer
..  ****.************ *******  . 

58. spacer 5.5|1075475|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NC_010699 (Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence) position: , mismatch: 10, identity: 0.688

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
caccggatatcagcctgcctgagtccgccccg	Protospacer
.**.********.***********. .   * 

59. spacer 5.12|1075903|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gctacggtaaacgtgaatgtgcgtattgacgc	CRISPR spacer
cagccggttaaagtgaatgtgcgtattattgt	Protospacer
    **** ** ***************. .*.

60. spacer 5.20|1076392|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 10, identity: 0.688

ttccatattcaggatcatatccgcacgataac	CRISPR spacer
cctttcattctggatcgtatccgcacgatatg	Protospacer
.... .**** *****.*************  

61. spacer 5.20|1076392|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047220 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ttccatattcaggatcatatccgcacgataac	CRISPR spacer
ccactcattccggttcatatccgcacgatttg	Protospacer
.. * .**** ** ***************   

62. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 10, identity: 0.688

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaatgt	Protospacer
.****** *********** ****. * ... 

63. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 10, identity: 0.688

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaatgt	Protospacer
.****** *********** ****. * ... 

64. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 10, identity: 0.688

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaatgt	Protospacer
.****** *********** ****. * ... 

65. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaatgt	Protospacer
.****** *********** ****. * ... 

66. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 10, identity: 0.688

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaatgt	Protospacer
.****** *********** ****. * ... 

67. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 10, identity: 0.688

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaatgt	Protospacer
.****** *********** ****. * ... 

68. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.688

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaatgt	Protospacer
.****** *********** ****. * ... 

69. spacer 5.24|1076636|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 10, identity: 0.688

caatagggaaaatggcatatgagggcgcgcaa	CRISPR spacer
taataggcaaaatggcataggaggaggaatgt	Protospacer
.****** *********** ****. * ... 

70. spacer 5.28|1076881|32|NZ_CP039509|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

71. spacer 5.28|1076881|32|NZ_CP039509|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

72. spacer 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.656

ccttgtgtgcaatgcaacaaaggcgaactggc	CRISPR spacer
gattgggtgcaatgcaataaaggcgtgtaaag	Protospacer
  *** ***********.******* .. .. 

73. spacer 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 11, identity: 0.656

ccttgtgtgcaatgcaacaaaggcgaactggc	CRISPR spacer
gattgggtgcaatgcaataaaggcgtgtaaag	Protospacer
  *** ***********.******* .. .. 

74. spacer 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 11, identity: 0.656

ccttgtgtgcaatgcaacaaaggcgaactggc	CRISPR spacer
gattgggtgcaatgcaataaaggcgtgtaaag	Protospacer
  *** ***********.******* .. .. 

75. spacer 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 11, identity: 0.656

ccttgtgtgcaatgcaacaaaggcgaactggc	CRISPR spacer
gattgggtgcaatgcaataaaggcgtgtaaag	Protospacer
  *** ***********.******* .. .. 

76. spacer 5.6|1075536|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 11, identity: 0.656

ccttgtgtgcaatgcaacaaaggcgaactggc	CRISPR spacer
gattgggtgcaatgcaataaaggcgtgtaaag	Protospacer
  *** ***********.******* .. .. 

77. spacer 5.16|1076148|32|NZ_CP039509|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049817 (Monaibacterium sp. ALG8 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.656

cagtctgcggggtttcctgcgtgtaatgaagt	CRISPR spacer
tcacctgcgggttttcctgcgcgtaatcggtg	Protospacer
. ..******* *********.***** ..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 73640 : 119029 39 uncultured_Caudovirales_phage(47.06%) head,protease,transposase,tail,portal,tRNA,capsid,terminase NA
DBSCAN-SWA_2 666609 : 685004 23 uncultured_Caudovirales_phage(90.91%) head,integrase,protease,tail,portal,capsid,terminase attL 666382:666430|attR 682323:682371
DBSCAN-SWA_3 822250 : 879447 54 uncultured_Caudovirales_phage(21.74%) integrase,transposase attL 831660:831675|attR 881543:881558
DBSCAN-SWA_4 1549852 : 1597858 79 Salmonella_phage(62.32%) integrase,holin,lysis,tail attL 1549748:1549762|attR 1596767:1596781
DBSCAN-SWA_5 1837371 : 1846542 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_6 1922384 : 1931245 8 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_7 2022187 : 2029440 8 Morganella_phage(33.33%) NA NA
DBSCAN-SWA_8 2808679 : 2851890 57 Salmonella_phage(54.35%) head,protease,integrase,tail,portal,tRNA,capsid,holin,terminase attL 2820463:2820478|attR 2852927:2852942
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage