CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040940	Cetia pacifica strain TB6 plasmid unnamed1, complete sequence	1 crisprs	NA	0	2	0	0
NZ_CP027432	Cetia pacifica strain TB6 chromosome, complete genome	5 crisprs	DEDDh,cas3,WYL,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,casR	2	11	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040940_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040940_1

60583-60766

Orphan

Consensus_repeat	Method
TACTTGCAAAACTTGCAAAAGACCCTGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040940_1

>merge|NZ_CP040940|1|60583-60766|CRISPRCasFinder
TACTTGCAAAACTTGCAAAAGACCCTGACGTTGAGGTAAAAAAATCGGTAGCAATCAATCCGAATACACCAAGTTATATACTCGCAAAACTTGCAAAAGACCCTGATAGCGAAGTTAGAGAGTTAGTTTTGTATAATTTAAATACGCCAGAGTTTGTTATAAAACATCTTACAAACGACCCTGA

>NZ_CP040940|1|1|60583-60766|CRISPRCasFinder
TACTTGCAAAACTTGCAAAAGACCCTGA	CGTTGAGGTAAAAAAATCGGTAGCAATCAATCCGAATACACCAAGTTATA
TACTCGCAAAACTTGCAAAAGACCCTGA	TAGCGAAGTTAGAGAGTTAGTTTTGTATAATTTAAATACGCCAGAGTTTG
TTATAAAACATCTTACAAACGACCCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040940.1\|WP_123353279.1\|55259_56582_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239089
NZ_CP040940.1\|WP_123353294.1\|68234_68462_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353289.1\|65729_66053_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353277.1\|53623_54274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353288.1\|65182_65719_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP040940.1\|WP_123353287.1\|64693_65164_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353286.1\|61809_64575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353293.1\|67818_68235_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353283.1\|59398_60352_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376266
NZ_CP040940.1\|WP_123353282.1\|57546_59346_+\|phosphoadenosine-phosphosulfate-reductase-family-protein	unknown	unknown	gnl\|CDD\|163177
NZ_CP040940.1\|WP_123353291.1\|66957_67362_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353290.1\|66054_66660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353281.1\|57111_57354_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353278.1\|54266_54875_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353292.1\|67443_67815_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353280.1\|56578_57058_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353275.1\|51462_52821_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353276.1\|52917_53631_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353274.1\|48245_51458_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040940.1\|WP_123353285.1\|60839_61724_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040940.1\|WP_123353279.1\|55259_56582_+\|hypothetical-protein	gnl\|CDD\|239089	cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.	0.00340947
NZ_CP040940.1\|WP_123353283.1\|59398_60352_+\|hypothetical-protein	gnl\|CDD\|376266	pfam18847, LPD29, Large polyvalent protein associated domain 29. This is an alpha and beta fold domain with conserved polar residues that is found in polyvalent proteins of conjugative elements.	6.24871e-05
NZ_CP040940.1\|WP_123353288.1\|65182_65719_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.99305e-17
NZ_CP040940.1\|WP_123353282.1\|57546_59346_+\|phosphoadenosine-phosphosulfate-reductase-family-protein	gnl\|CDD\|163177	TIGR03183, DNA_S_dndC, putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase. [DNA metabolism, Restriction/modification].	9.17111e-45

>NZ_CP040940.1|WP_123353283.1|59398_60352_+|hypothetical-protein
MPYLPKEKIAEIRKELKKTFPFIKFSVKQKPKSSGVDIVIKSSKKINFGDMLVGEFYPKKSINHYYIMPRYFNSFPKQALILEQIKEIVARIGGLKTEYEDVDYGSVPTFYLAISIGSLKEPYIFEDGYPLKVEQLIPLENIPVGEKVSEDEIRLNNPNAMRVNFLNDLNAFLTANGIKFGDLQISFYTDPEHKRLIFKVDNYTHAREKLFEFLNDFHYRLKNPTGNQEYIELDDTYLVAEYNLKQEKKKIEEDINYFYLTKAFGFLRKGEMIDLEVKRLINDVFWDNQKLRDDLIEKVESYQKNKLENSNGISLSL
>NZ_CP040940.1|WP_123353282.1|57546_59346_+|phosphoadenosine-phosphosulfate-reductase-family-protein
MRLTDYRDIIQNIKNVVADFLQKDYAISVAFSGGKDSTLTLILFFEAIKEFPLQFLENKKISINFSDTLMELPQYEIYVIETLKKIEEYIQKQGWNIKLNKIKPERKHKFFNLILGKGQTLPRRDFRWCTDRLKILPQEKLEDMEEKKLTIIGARKEESNDRKKRLEKNSSEENKYIKKVNDNKYLFAPIEDLKLEDVWEGIFLFSQNSFQTDPQEWINFTDIYNLYKSATSNKDLYPDARFGCWLCPLVKKDQTLMNLVEKYPQYQPLLEFRDFIMSYQTIWSKSPHLPPLRDIYNHRNFKVNLYKIKNHRQGMISPGGYSLETRIMFYEKLLTTLKEVKNLDKKFPLKVYLDEEDIKYIQEIWFFEGDYNLTAYKKAKEILEIDINYTNLSKEVRFYKQFLYLYTHYYCPYKADEASFSDIRDEILIMKEFVKINKIDIKEIDLMDKVYFGDLIHSYATARKFIFEELREKGVYFSDSSFEYKIAEEWFRDEISFWVFEYLHRKGYVKFVEDKIRPDSLERFYNALEFMKVADSVEAVEENPFLTIEEKIEFMELNREGINNYKIYLEKIEKYFDELYAEKNEEQEYPKISQLSLFS
>NZ_CP040940.1|WP_123353281.1|57111_57354_+|hypothetical-protein
MIFSLNKVTKTISHHKETCREVVSFLRKHGLSLTEFKEKRDGVEVGKNQLWIEETHFSKRLADFFFNGKDYGKLYCSKCF
>NZ_CP040940.1|WP_123353280.1|56578_57058_+|hypothetical-protein
MSEYSVILNLTQHNATEEQKKAGVIDLPSAYQEKLKALLTFNELPQCEEVQKRAREIYDLVIEFCLDENSPVRDEVKSMITGEIKEDKLYLDENEFKKLNIAFMIGGALWLMKPLVEELENIGTPLFAFTKRVVEEVKKEDGSIEKKAIFKHEGFVTAC
>NZ_CP040940.1|WP_123353279.1|55259_56582_+|hypothetical-protein
MYLLRKEKKIDNKLLEIVSEFKKIEKEKITDVRVVSTNYYPISKEKIENVNVKEIIVEWVDNTKMIMIGEYNNFYGIKFVLSLIEKEGDNLLEKDGDFYLLSKKNKEKLKEYALKKIRKGLTDEVKNKIAKNIADYPVSFTINLNTFEYIIKYHPVDNYCGDEWRGGDCLRSVVDDKVVKEDKGLLKIEDFYPLFTLEEIMQFLTPLGRKRALSIKPEELKKDKKLYKYALSLIKKSAQEDYKKYIQYLLRKKEEKNTIKAFEAYRALRKEGIKIEKNEKFEKCLKAKSFLIQNGGNYFVTDDLFSNSYGEILECFEDDVFLLKDALKRIDNKLKNTIIENILKELNLKKNQNYFVCDNKWRELEVLKELNILNIKQYEAQLSKKFDLRFYIVINDINNPEFVNKTNYATGTLIGKGGSRIKEIAKEIGVKFIKLVKEVK
>NZ_CP040940.1|WP_123353278.1|54266_54875_+|hypothetical-protein
MIENAIKRLQEAYKQGLIIYPRVDNDYLRGTPYAFFPHPPLRVFDEFSTPLKEKVYPLDKDTLLLYLCNKRIIKASIAQAMYNFADKIFDNNLEVKKELENDIKHRNKEYHNFLSENSLTPSSFYAKYFFAPRPFYTYKIKNKKLKKPEPEKDFMKTKTKIIDYELEFKERKNFFEALEDFQNRRRLQKYLLRPSLKMLNDC
>NZ_CP040940.1|WP_123353277.1|53623_54274_+|hypothetical-protein
MSKITITPELIEKTLSEYAKINNQIVKEFANNDKVVIKKLTEELDVNKQKEKFRFYLLITILLIVLDYVLNADSFFIYVAIIPGLIALYRLTAIKNAKRASKNEALLKEKIREFFENSQEYERLLESIQVYASIPPNKKVIENYGVISAVDIEDLKEEAARKGANAIINFSDNRQVVSKTSSIGSHVYSTEVTRGEVHGEAVFLVDVDVKEEGKDD
>NZ_CP040940.1|WP_123353276.1|52917_53631_+|hypothetical-protein
MILKFQNLDGSWEKRKVVLEKKIKEETEDLYFRYAIFSLIIIFIALPDNLFNFIPFLDKVVFGIKVVLFIILYRKIDSLLFTTERIKIKNEEEKTFYLNKVSFFTYFRKKYPLVYFFNMFYIFVMLTSFNFYGLMLFLSIIIIGALFYKFKLPIKYLSYFIFTIFSVYLIATFLFVLNTGLINALEILINISVTLITFSLFLYINLYIFYEYQMSNVYMLKDKEILYYVNVKEEENE
>NZ_CP040940.1|WP_123353275.1|51462_52821_+|hypothetical-protein
MNKDKLLEIIRNCEEIPENINELGISFDDTDERAYEIFIANDEILSSVIDGETFESLFADAVHNSLDEVITLLEEKFGSYFYYTKEVNKEIFKALRDAPLIKIYSDNIFNEEEINKMLSKEYVTFDNEEYLKDYLFEYPFYNLFNRKLSYILEDAINAARVEPLELAIEDEDTNELLAIDFRKFFQKLYDGWSDFVYKKYGYLLEYENQAELNLKNVPGIIIDVLKKYRDLNVLFFDIDKESIEVKDTDYIRSDKTIEYLSNGMVVYNQEGLYFKVFKDKKSFENWRETGEEKYILSEFNDEKELDEYLGMFSLIKISSMDGLSPEPNIFILNPKDLLTRLQKYNNGARIEYLNEFLYELQKYKLPEYFNYKPDIILAYEDGNIKVKNNSFLTTELFYLTNLYKEYKNGKINKKFLEETIRSLNDKEVENFIFPKIKIKHENQNSNNLTNNM
>NZ_CP040940.1|WP_123353274.1|48245_51458_+|hypothetical-protein
MAKLIIDPNDSKGFRFYLKTEEGETKLDKILQIEDGKLKTKITMDGVSANFITPATLALVLPRDIEEAKKVLEEHPEGVLYLSSITSESQYHTIDEIEIKDFKADFSNTKAKTELKAYETPERFFDFLGSLIEDEIKKRIFLEDNITKIETLIQKDKDFMGKITTKLQFVPIGQIKDAIKYLLNENDLNMSNFAEDYVKVAEEIKKEEKFFNLIEDLKFFLQKPLKELQSENVIQEIKKAKLTPLKIEKIGIFDPQAGSGKILDIFKNKGINSALLGTELRDIQNNDPDYKVITGVNFSIHKNVIKDVLESKKSHIPKNLIYYLNPPYTKDDEVAKDSIQSLPDNAFVMGLFPTKMAKFLKNILKGIIFEIPKELTGYNDSNAPENFLFIFGVKPSNNQLFSGAKYYKVDSYESIKKIIDEFLQDNYLVDSKLDEILTYYRAERNFDSFKNLLQKAIQDNEELYKNIERLRESISIDLIKEFFSPINRAIKGKVFQDSRFFVKDDKDEKKLSFFEVVQDLTLLNFYKNVMPETFKLIQLVAEKINYKLPHMEDNFRHYKLGDKYEGEKDLVTNKNLGMMKLYYYPDVIDISEQYSKDLLFKIVKEIAEDNKVNVTIDEEIEFKKLLQKADKLVFKNEKSISLEEGISYNNEVYVLTDKFGFDLAKLSCNVNDFFKKLQEYNLFNFDDFVDEVEISNEKLEKVISRFEEYMKNDVIDSILRFNFKIGTFEGFDEEAEFQEVKTKFIDEIIALKNKNVTQLLEFADKYKLIEFFQERIVFPDFKRQLKKEMDKTFPINNEEVKKKVYKFIVQSYENREITFFENERGAFFNELKKALKQKYEFKDEDYEDFILAVTDALTERYKAKRAIFTGYAKLALILKNYAKLITAKNFEEKKKIFMTDLFLKAFGLKPHQAKEAFNYLELSPNKKLEMLFWEMRAGKTRAMLAIGFLLSLYKNEKFQLLIETANTYDISQQILESFPFLFVDAGIYTPSGDLPLNDVYESIMYEEIIPNIPVYTQKYLIGKGDTADIIKKNFYKDFMEIKKLIDSNPDEYAKIYEKSDFAEILKVCRR
>NZ_CP040940.1|WP_123353285.1|60839_61724_+|hypothetical-protein
MKEKITFGELLNYYNSDNNYVVLDKMETKKAVYLPNCVYFDKEDLEKFKEKFDIDVKKLYFDEKNLFSVIEKIEEQNEEKAEEIKDFLRELPYLPQYKPGYYCEDIIAQEDLEGLGDVIVLDLSNGILNAPEDFNDVMENYYFWWDGKNWNSSEIGYMDEVYAEEIDSRKDNNLIYTYYKAFNNLRFRVIDTPYIESLPEIDTEWGDWEKIEEKLGNINRYIRKLSLKTELINNDKGFFYLTETYQDYKKGILSFDDLEMIIQKSDIKDNIKKSLIDTLNPNSVDNSPSNSPTI
>NZ_CP040940.1|WP_123353286.1|61809_64575_+|hypothetical-protein
MSEVTERKPFGRVILSYSNKDKTRIGNPNYIGRELFNPAEAVFTQKIEDTIPELRELINKAEEPIGGEVLKVLDTISINDMAFFTIGENGYISVIDKRINKPVKTYEVELDKNGRITTTIKQEVDANLQIIQPKIEKEKVEEFAINTANVFADLRKHVDTHAFVAELKKHNLIGENGAVELDTLAKAFQFIQAVIKAAESNPDEFIAAFNEKFQTNVKTLAEIKEKFNYFVLTGLKLNDVLKVAFTLEKMKGKTQEEIDNILKDYSEQDRFFLKSLAEALQELMDLSVRKANYIKVAYNANGQIVLFDNKTLNSIGNGEIHSDLGFAELTKEVREAFATIEKYHRKAQDEDCPTLEEAQEAENILRAAIEELTKEDNSLYVEKVVLPTIREADVVSLGGDDHNALKAFQVLFDFYMKKTFKQFIENKKDALYSDEVLLTKPGDDGKRRLRYNSYATLEKYGIDIPEELKDKKIDSYVIVAKLPTIPSYSNDFYLKTKSAIIGNVYMAGDKIVDIKSGTAYSQYLKTYAKLGNVLLGIANLEDPKKAKDYAIELNNIIKFQVRTRDGIKPLENVSSEYKKFIKAIEKPILRTLQKALNDGNIEEAKKIIENAGNAPAKTPVKVLSEFLKAYETYAKTNSIYTNNTIAFALKSKNVVNALKSGKDFEELKESLTKNERKLFGTFKSRFFVLKDAIITTLENDKLKIAEMDGIDEEKKQYLDIESVAKNMSFILNGNVKGKLYYTKTENNQLIINPYLSANGFITGVDNPVEAKTEFGITNYTLNKEVYNTIMQRLDEFTNNNMFILQKKNEETKKLIEQNKAAYANTQGIFGDKALGNKVKVQLGDIAPTEVNINVSEKPQNDIPAEVEELPTQYEVTDADIDIELDNDDNIPQPGEDEDIDILQVAINEKENTQAPNPINSL
>NZ_CP040940.1|WP_123353287.1|64693_65164_+|hypothetical-protein
MTLLFKKDSVYLPELLQIVRQTPKSLKLQGTTQVIEQLLRAGYKHLLSIKQIDELAQYKDFITNLENTIYYDDIKDIMIPRPVLNEYFNKDYLVPKKLPDVAINRHFLIEELIEPLRNKGVVNYLGIKPSRDDIKFYDDIVKVKRKGKILHFGVWY
>NZ_CP040940.1|WP_123353288.1|65182_65719_+|metal-dependent-hydrolase
MTFRGHIILATSVSLPFINAIFPYPSAQFYYAIAGVILGALLPDIDEPGSYIGRKIPIISFLISFFVKHRGFTHTIFFALIPILFAFLVPYCYFCYNSFYNFNIFYLQIFLFFIGVGCILHDIGDMLTKSCVKFFYPISNKTICIAPKSLRFRTGSIEENIVVLILFVLLTTEISLIV
>NZ_CP040940.1|WP_123353289.1|65729_66053_+|hypothetical-protein
MKKIIIIAMFFSFSFSYICPIHNFESNSFSQKATTSSVIQNHNQKIRNSLQNLIKKEKELQKRLKKKLELSKKLEVLYKNILLEKKKQVFILDKIQKQSAYEILKEK
>NZ_CP040940.1|WP_123353290.1|66054_66660_+|hypothetical-protein
MYIDIFKVKNYKKVEVMEGIYASAGSFMLEMRNCLKREFPEVYFDNDETLPAKNIGCFIFGQPDKWKSVLAIRYENDDNSKETADIIVRLDKYRCPDSFKIGTIIAVKMTLEKLKEEGIIEDFEKAEGYYIAFLEKEREKIEQDKGFFYLTETYRDYKEEILTKDKLKYIVSQVFDNFDIEKFLTKEQYTILKKPTRSTIK
>NZ_CP040940.1|WP_123353291.1|66957_67362_+|hypothetical-protein
METVFTFNDLKEMTETFWELQKDLKAIREKYPTWKISNRTKLYKKYRNFEVQGEKIVDYVSGNHLYLYNVKFKGLDNYSFRLVDNKLILNQPCCSYEGNFVVTIQNCSEVKNSQLKTLIDIEELGVTEFVLKWF
>NZ_CP040940.1|WP_123353292.1|67443_67815_+|hypothetical-protein
MNSFNEIILQTYNVLIPFFVKDFALYFGLSLYMFFFVFFIKSKRIKLDSKIVTLFGIIGLFYFLYLWFPLSLHIPEILNPFKASFYGLLGGTIGEWLENIIKNKKNSWSDNKFEYPSNIFKEQ
>NZ_CP040940.1|WP_123353293.1|67818_68235_+|hypothetical-protein
MKWKKTCKACIYYAYKKQGRRFFNVCTLFNKRLLSETEDICENFKQERIKINKQEAETLRRIVAFAKAYGTIYTTMLTDINMAEVVKEAEQIKNDKEAEKKVKKYMKKLTKIGFLTRPKRARTLMDYYAVWYELIRSK
>NZ_CP040940.1|WP_123353294.1|68234_68462_+|hypothetical-protein
MYIAYDIRKIPVIIDEFHQYGIEEHELYIKTPYLTEYEIKKIKEKLNKNETFITFDGKGDEKIKNELINFINTRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040940_1	1.1\|60611\|50\|NZ_CP040940\|CRISPRCasFinder	60611-60660	50	NZ_CP040940	Cetia pacifica strain TB6 plasmid unnamed1, complete sequence	60611-60660	0	1.0
NZ_CP040940_1	1.2\|60689\|50\|NZ_CP040940\|CRISPRCasFinder	60689-60738	50	NZ_CP040940	Cetia pacifica strain TB6 plasmid unnamed1, complete sequence	60689-60738	0	1.0

1. spacer 1.1|60611|50|NZ_CP040940|CRISPRCasFinder matches to NZ_CP040940 (Cetia pacifica strain TB6 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgttgaggtaaaaaaatcggtagcaatcaatccgaatacaccaagttata	CRISPR spacer
cgttgaggtaaaaaaatcggtagcaatcaatccgaatacaccaagttata	Protospacer
**************************************************

2. spacer 1.2|60689|50|NZ_CP040940|CRISPRCasFinder matches to NZ_CP040940 (Cetia pacifica strain TB6 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tagcgaagttagagagttagttttgtataatttaaatacgccagagtttg	CRISPR spacer
tagcgaagttagagagttagttttgtataatttaaatacgccagagtttg	Protospacer
**************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027432_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027432_1

39556-40705

Orphan

Consensus_repeat	Method
ATAACACCGACACACCTGGAGTATTGAAAT	PILER-CR
ATAACACCGACACACCTGGAGTATTGAAAT	CRISPRCasFinder
ATAACACCGACACACCTGGAGTATTGAAAT	CRT

17 spacers

The CRISPR arrays of NZ_CP027432_1

>merge|NZ_CP027432|1|39556-40705|PILER-CR,CRISPRCasFinder,CRT
ATAACACCGACACACCTGGAGTATTGAAATTATACAAATTATACAGCTAAATGCATAACAGTATATATAACACCGACACACCTGGAGTATTGAAATAAAGCAATCATCCACGCCGTAGCTTCTTTTACTTTATAACACCGACACACCTGGAGTATTGAAATAGGAATTCGGTGTTAGTTTTAGAACTATACAAAGAAATAACACCGACACACCTGGAGTATTGAAATCTTAATTCTTTTATTACTTTTTTCATTTTACTCTCCATAACACCGACACACCTGGAGTATTGAAATGCTAAAAAATTCGTAGACGGAATCGACTTTTCTAAAAATAACACCGACACACCTGGAGTATTGAAATTCGAGCCAATCAGGAGAAAAAATGCCGTCGCCTTCTATAACACCGACACACCTGGAGTATTGAAATAGCGTTGAAGTAATTGTTTTGAATATCGATAGCCCGATAACACCGACACACCTGGAGTATTGAAATTTTCCTTAACTTCCGAGCTTAATACTTTACCGACAATATAACACCGACACACCTGGAGTATTGAAATACGCTATTTTTGACGCAAAAAATGAGTATGAAAATGAATAACACCGACACACCTGGAGTATTGAAATCTGCTTTAATTAAGTTTTGAGCTTTTTTTAGCTTTTATAACACCGACACACCTGGAGTATTGAAATATAGCGATGATGAGAGAGTGGAGAAGAGAGAGGGTATAACACCGACACACCTGGAGTATTGAAATATAGCGATGATGAGAGAGTGGAGAAGAGAGAGGGTATAACACCGACACACCTGGAGTATTGAAATGCCCTGTTTCACGAAACGGTTATTTTCAAGCCCTTATAACACCGACACACCTGGAGTATTGAAATAAAGCGATATAATCTTAAATCTCTTATTCTTATACTCATAACACCGACACACCTGGAGTATTGAAATTCTGTTACGGGGTCGTTTTCGATGTTCGGAGTTGTTATAACACCGACACACCTGGAGTATTGAAACAAATCTATATCTCTGCTAAGAATAGGCGTTTTATAATAACACCGACACACCTGGAGTATTAAAATATTTTAAATCGCTTTTAAAGCTCACGCACATATGCATTACACCGACACATTTGGAGTATGAATTT

>NZ_CP027432|1|1|39556-40640|PILER-CR
ATAACACCGACACACCTGGAGTATTGAAAT	TATACAAATTATACAGCTAAATGCATAACAGTATAT
ATAACACCGACACACCTGGAGTATTGAAAT	AAAGCAATCATCCACGCCGTAGCTTCTTTTACTTT
ATAACACCGACACACCTGGAGTATTGAAAT	AGGAATTCGGTGTTAGTTTTAGAACTATACAAAGAA
ATAACACCGACACACCTGGAGTATTGAAAT	CTTAATTCTTTTATTACTTTTTTCATTTTACTCTCC
ATAACACCGACACACCTGGAGTATTGAAAT	GCTAAAAAATTCGTAGACGGAATCGACTTTTCTAAAA
ATAACACCGACACACCTGGAGTATTGAAAT	TCGAGCCAATCAGGAGAAAAAATGCCGTCGCCTTCT
ATAACACCGACACACCTGGAGTATTGAAAT	AGCGTTGAAGTAATTGTTTTGAATATCGATAGCCCG
ATAACACCGACACACCTGGAGTATTGAAAT	TTTCCTTAACTTCCGAGCTTAATACTTTACCGACAAT
ATAACACCGACACACCTGGAGTATTGAAAT	ACGCTATTTTTGACGCAAAAAATGAGTATGAAAATGA
ATAACACCGACACACCTGGAGTATTGAAAT	CTGCTTTAATTAAGTTTTGAGCTTTTTTTAGCTTTT
ATAACACCGACACACCTGGAGTATTGAAAT	ATAGCGATGATGAGAGAGTGGAGAAGAGAGAGGGT
ATAACACCGACACACCTGGAGTATTGAAAT	ATAGCGATGATGAGAGAGTGGAGAAGAGAGAGGGT
ATAACACCGACACACCTGGAGTATTGAAAT	GCCCTGTTTCACGAAACGGTTATTTTCAAGCCCTT
ATAACACCGACACACCTGGAGTATTGAAAT	AAAGCGATATAATCTTAAATCTCTTATTCTTATACTC
ATAACACCGACACACCTGGAGTATTGAAAT	TCTGTTACGGGGTCGTTTTCGATGTTCGGAGTTGTT
ATAACACCGACACACCTGGAGTATTGAAAC	AAATCTATATCTCTGCTAAGAATAGGCGTTTTATA
ATAACACCGACACACCTGGAGTATTAAAAT

>NZ_CP027432|1|1|39556-40705|CRISPRCasFinder
ATAACACCGACACACCTGGAGTATTGAAAT	TATACAAATTATACAGCTAAATGCATAACAGTATAT
ATAACACCGACACACCTGGAGTATTGAAAT	AAAGCAATCATCCACGCCGTAGCTTCTTTTACTTT
ATAACACCGACACACCTGGAGTATTGAAAT	AGGAATTCGGTGTTAGTTTTAGAACTATACAAAGAA
ATAACACCGACACACCTGGAGTATTGAAAT	CTTAATTCTTTTATTACTTTTTTCATTTTACTCTCC
ATAACACCGACACACCTGGAGTATTGAAAT	GCTAAAAAATTCGTAGACGGAATCGACTTTTCTAAAA
ATAACACCGACACACCTGGAGTATTGAAAT	TCGAGCCAATCAGGAGAAAAAATGCCGTCGCCTTCT
ATAACACCGACACACCTGGAGTATTGAAAT	AGCGTTGAAGTAATTGTTTTGAATATCGATAGCCCG
ATAACACCGACACACCTGGAGTATTGAAAT	TTTCCTTAACTTCCGAGCTTAATACTTTACCGACAAT
ATAACACCGACACACCTGGAGTATTGAAAT	ACGCTATTTTTGACGCAAAAAATGAGTATGAAAATGA
ATAACACCGACACACCTGGAGTATTGAAAT	CTGCTTTAATTAAGTTTTGAGCTTTTTTTAGCTTTT
ATAACACCGACACACCTGGAGTATTGAAAT	ATAGCGATGATGAGAGAGTGGAGAAGAGAGAGGGT
ATAACACCGACACACCTGGAGTATTGAAAT	ATAGCGATGATGAGAGAGTGGAGAAGAGAGAGGGT
ATAACACCGACACACCTGGAGTATTGAAAT	GCCCTGTTTCACGAAACGGTTATTTTCAAGCCCTT
ATAACACCGACACACCTGGAGTATTGAAAT	AAAGCGATATAATCTTAAATCTCTTATTCTTATACTC
ATAACACCGACACACCTGGAGTATTGAAAT	TCTGTTACGGGGTCGTTTTCGATGTTCGGAGTTGTT
ATAACACCGACACACCTGGAGTATTGAAAC	AAATCTATATCTCTGCTAAGAATAGGCGTTTTATA
ATAACACCGACACACCTGGAGTATTAAAAT	ATTTTAAATCGCTTTTAAAGCTCACGCACATATGC
ATTACACCGACACATTTGGAGTATGAATTT

>NZ_CP027432|1|1|39556-40705|CRT
ATAACACCGACACACCTGGAGTATTGAAAT	TATACAAATTATACAGCTAAATGCATAACAGTATAT
ATAACACCGACACACCTGGAGTATTGAAAT	AAAGCAATCATCCACGCCGTAGCTTCTTTTACTTT
ATAACACCGACACACCTGGAGTATTGAAAT	AGGAATTCGGTGTTAGTTTTAGAACTATACAAAGAA
ATAACACCGACACACCTGGAGTATTGAAAT	CTTAATTCTTTTATTACTTTTTTCATTTTACTCTCC
ATAACACCGACACACCTGGAGTATTGAAAT	GCTAAAAAATTCGTAGACGGAATCGACTTTTCTAAAA
ATAACACCGACACACCTGGAGTATTGAAAT	TCGAGCCAATCAGGAGAAAAAATGCCGTCGCCTTCT
ATAACACCGACACACCTGGAGTATTGAAAT	AGCGTTGAAGTAATTGTTTTGAATATCGATAGCCCG
ATAACACCGACACACCTGGAGTATTGAAAT	TTTCCTTAACTTCCGAGCTTAATACTTTACCGACAAT
ATAACACCGACACACCTGGAGTATTGAAAT	ACGCTATTTTTGACGCAAAAAATGAGTATGAAAATGA
ATAACACCGACACACCTGGAGTATTGAAAT	CTGCTTTAATTAAGTTTTGAGCTTTTTTTAGCTTTT
ATAACACCGACACACCTGGAGTATTGAAAT	ATAGCGATGATGAGAGAGTGGAGAAGAGAGAGGGT
ATAACACCGACACACCTGGAGTATTGAAAT	ATAGCGATGATGAGAGAGTGGAGAAGAGAGAGGGT
ATAACACCGACACACCTGGAGTATTGAAAT	GCCCTGTTTCACGAAACGGTTATTTTCAAGCCCTT
ATAACACCGACACACCTGGAGTATTGAAAT	AAAGCGATATAATCTTAAATCTCTTATTCTTATACTC
ATAACACCGACACACCTGGAGTATTGAAAT	TCTGTTACGGGGTCGTTTTCGATGTTCGGAGTTGTT
ATAACACCGACACACCTGGAGTATTGAAAC	AAATCTATATCTCTGCTAAGAATAGGCGTTTTATA
ATAACACCGACACACCTGGAGTATTAAAAT	ATTTTAAATCGCTTTTAAAGCTCACGCACATATGC
ATTACACCGACACATTTGGAGTATGAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027432.2\|WP_123353167.1\|32546_32897_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|380301
NZ_CP027432.2\|WP_123353168.1\|32909_33341_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|349954
NZ_CP027432.2\|WP_139932227.1\|41050_41590_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
NZ_CP027432.2\|WP_123353181.1\|43655_44456_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
NZ_CP027432.2\|WP_123353175.1\|37599_38064_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP027432.2\|WP_123353182.1\|44517_45213_-\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP027432.2\|WP_123353173.1\|36234_36921_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP027432.2\|WP_123353176.1\|38063_39398_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236269
NZ_CP027432.2\|WP_123353185.1\|46747_47791_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|372338
NZ_CP027432.2\|WP_123353174.1\|36917_37478_-\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NZ_CP027432.2\|WP_123353186.1\|47783_48173_-\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP027432.2\|WP_123353179.1\|41964_42690_-\|DUF3108-domain-containing-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123353171.1\|34820_35522_-\|suhb	unknown	unknown	gnl\|CDD\|238820
NZ_CP027432.2\|WP_123353183.1\|45221_45773_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_CP027432.2\|WP_123353169.1\|33274_33973_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP027432.2\|WP_123353184.1\|45754_46720_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP027432.2\|WP_123353172.1\|35518_36238_-\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|239318
NZ_CP027432.2\|WP_123353180.1\|42735_43659_+\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|181414
NZ_CP027432.2\|WP_123353170.1\|33972_34818_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP027432.2\|WP_123353178.1\|41720_41984_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP027432.2\|WP_123353167.1\|32546_32897_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|380301	NF033459, DksA_like, RNA polymerase-binding protein DksA.	1.22572e-51
NZ_CP027432.2\|WP_123353168.1\|32909_33341_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|349954	cd18081, RlmH-like, 23S-rRNA-pseudouridine1915-N3-methyltransferase RlmH. 23S rRNA (pseudouridine1915-N3)-methyltransferase RlmH catalyzes the addition of a methyl group at the N-3 position of pseudouridine Psi1915 in 23S rRNA to form m(3)Psi1915. This family of proteins belongs to the SPOUT methyltransferases. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	3.21473e-40
NZ_CP027432.2\|WP_139932227.1\|41050_41590_+\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	0.000144203
NZ_CP027432.2\|WP_123353181.1\|43655_44456_-\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	9.13167e-80
NZ_CP027432.2\|WP_123353175.1\|37599_38064_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	7.47958e-62
NZ_CP027432.2\|WP_123353182.1\|44517_45213_-\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	3.20835e-40
NZ_CP027432.2\|WP_123353173.1\|36234_36921_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.75487e-115
NZ_CP027432.2\|WP_123353176.1\|38063_39398_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236269	PRK08462, PRK08462, acetyl-CoA carboxylase biotin carboxylase subunit.	0
NZ_CP027432.2\|WP_123353185.1\|46747_47791_-\|MFS-transporter	gnl\|CDD\|372338	pfam12832, MFS_1_like, MFS_1 like family. This family contains proteins related to the MFS superfamily.	5.55399e-33
NZ_CP027432.2\|WP_123353174.1\|36917_37478_-\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	4.08941e-99
NZ_CP027432.2\|WP_123353186.1\|47783_48173_-\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	7.82348e-21
NZ_CP027432.2\|WP_123353171.1\|34820_35522_-\|suhb	gnl\|CDD\|238820	cd01642, Arch_FBPase_2, Putative fructose-1,6-bisphosphatase or related enzymes of inositol monophosphatase family. These are Mg++ dependent phosphatases. Members in this family may have fructose-1,6-bisphosphatase and/or inositol-monophosphatase activity. Fructose-1,6-bisphosphatase catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway.	1.33079e-32
NZ_CP027432.2\|WP_123353183.1\|45221_45773_-\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	3.75251e-79
NZ_CP027432.2\|WP_123353169.1\|33274_33973_-\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	3.5071e-26
NZ_CP027432.2\|WP_123353184.1\|45754_46720_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	5.43089e-12
NZ_CP027432.2\|WP_123353172.1\|35518_36238_-\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|239318	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.	1.9493e-19
NZ_CP027432.2\|WP_123353180.1\|42735_43659_+\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|181414	PRK08410, PRK08410, D-2-hydroxyacid dehydrogenase.	4.16038e-171
NZ_CP027432.2\|WP_123353170.1\|33972_34818_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0

>NZ_CP027432.2|WP_123353176.1|38063_39398_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MKRILIANRGEIALRAIRAIHKLNKEAVCVYSTADKEAIYLEFADGAVCVGPAPSNQSYLNIPAIITAAEMTECDAIFPGYGFLSENQTFVEVCKAHNIAFIGPSLEVMELMADKSKAKEVMKKAGVPVIPGSEGAIKDVEEAKKVAREIGYPVILKAASGGGGRGMRVVEDESYLENAFLAASSEAESAFGDPTIYMEKYIEKPRHVEVQILGDKHGNVIHLGERDCSLQRRHQKLIEESPATILDEETRKKLHETAVKAAKAIGYYSAGTIEFLVDKDLNFYFMEMNTRLQVEHPVSEMVTGLDLVEWMIRVEEGEKIPSQDEIEIKGHAIECRILAEDPEKFIPSPGKIQKLYIPGGKDVRVDTHIYAGYIIPQYYDSLIAKVITWGRDRNEAIEIMKEALREFKVSGIKTTIPFHLKMLENEDFLNNNYDTKYLETKGMA
>NZ_CP027432.2|WP_123353175.1|37599_38064_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLRELKKLLEAFDKSKTNILELETEEFRIYLDKTAPSAAATVAPQASAPQQITSVENAPVVQKVEAKPECEVEGDLITSPMVGTFYQAPSPDSPPYVKVGDKVKKGQTLCIIEAMKIMNELEAEFDCEILEVLVEDGQPVEFDTPLFRVKRLS
>NZ_CP027432.2|WP_123353174.1|36917_37478_-|dCTP-deaminase
MGVKSDKWIRTMAKNFGMIEPFEEKQVRKGIISYGVSSYGYDIRVSDEFMVFTNINSTVVDPKNFDERNVVKIKGDCIIPPNSFALCRSVEYFRMPRDVLAICVGKSTYARCGIIVNVTPIEPEWEGHITIEISNTTPLPAKIYANEGIAQLIFLGADDDMCDISYADKGGKYHGQQGITLPKVDK
>NZ_CP027432.2|WP_123353173.1|36234_36921_-|orotidine-5'-phosphate-decarboxylase
MKLCIALDNPTKEENLKLANELKEYANDLWLKVGFRSYIRDNNRFLEELKNLGYNIFLDLKLYDIPNTMADAAEEIAKLDIDMFNVHASAGIKAMQTVMQRLSKFQKRPLVLAVTALTSFDNEEFKRIYGKDINEKAEEFAIDAHKAGLDGVVCSVWESLDIKKATSNDFITLTPGIRPFGEDAGDQKRVADIKAAKENSVDFIVVGRPIYKSQNPKEKVEKILKEIK
>NZ_CP027432.2|WP_123353172.1|35518_36238_-|thioredoxin-fold-domain-containing-protein
MKKILIGISAAVMLFASQNTQKEAMEALKASPLYNQIIKAKKEGLPIKAQKIDGLYVYRLTTPRGVIYIYLTADKKYTFIGNAIDNKTKKPIQIAKNANIINKGVMFTFGKGKKEIYLVTDPECPFCRKMEAMKKDILEKNYKVHVILLPLPFHKYARPMSYYILAGKTDAQRAKRMKEVLSGSDAWKKFKPTKEQIKKFEEELKNAQIAAEELDARGTPSVFDKNFNPIPWPTLGDKK
>NZ_CP027432.2|WP_123353171.1|34820_35522_-|suhb
MSLASNFVDATLCCALKVIRALHEELNLFEEKGIGFGGDRSLNIDLIAEKIFIKKLSEFGNILSEEAGFIDNGKDKKIVIDPIDGSYNVSNNIPYFGCSVYFEDTASVVVNLSNGDYFVKDDKGKRFDNLFRKPFHANFRHDVILFEKAYQNPDMVAKLAKHSLKFRAPGALSLSLSYGEASKAVIYKGEIREFDIAAAKFYNSDCHWHFEEDLIVMSPKKEYLEEVLSIIKE
>NZ_CP027432.2|WP_123353170.1|33972_34818_-|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta
MGFGDFLKKFKKPQPSKQEQTTWVKCPACGAISFYKEVQKQHNTCPKCGYHFRMSAQERIEMLADEGTFVEYDKNLEPNDPLNFVDKKSYKKRIEENYKKTGRKSSVISGECKINEIPTQLVVFDFAFMGGSLGSVEGEKIARAVMRAIEKRQGLVIVSTSGGARMQESTFSLMQMAKTSAALASLAENKLPYISVLTDPTFGGVSASFAFLGDYIIAEPGAMIGFAGPRVIKQTIGEDLPEGFQRAEFLLEHGLIDMVVKRDELKKTISDLLRFSLKSAS
>NZ_CP027432.2|WP_123353169.1|33274_33973_-|thiamine-phosphate-synthase
MALYALLDFDTLKKYDISIKDFCKTAKGLKAKIIQYRDKNSSLEEKKQRLLEIRKYWKKTLIINDIIELLPYCDGIHIGQEDLENLSQKYNLSKYEIIEKLRTGELLEWKIEHGTWIIKNEKNFPLSVVNYKFIVGLSTHNKEEILEANKLPLSYIGLGAYRPTSTKDTSNILGQKVIELIKYSYHPVAVIGGVKIYDKIPSKFKVVGSDICRLTSSRSKKRKISKRKLKSL
>NZ_CP027432.2|WP_123353168.1|32909_33341_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MQINVFSIEKKEDFKKEIEEFIKKSKQFANVKNITLYSKNLAKTNNPQQEYSKIFEKYTQNGFNIILTPEGKLIDSYEFSKFFEHSLVNFFIAGAYGFDEDFKSKGVNISLSPLTMSHKIAKLVLFEQIYRGLSIKHNHPYHK
>NZ_CP027432.2|WP_123353167.1|32546_32897_-|RNA-polymerase-binding-protein-DksA
MSININHFKEILLMRKAELEKILYNISNEINDISKCDIKDDGDFAAASMDSGRDYQIYLNQKKELAEIEEALKRIEEGTYGICEMCDEPIQEERLKIKPYAKYCIICREIIEKEGK
>NZ_CP027432.2|WP_139932227.1|41050_41590_+|hypothetical-protein
MYEKNETLEILDKQNKEIVSENQKILQKLDELAEENKQLKSELEEVKEQQQKTKEFVKELAEEMVMLLGKFIKEQNKKLDAEVKKALDELPKKITSEEKFEVFRNWFENTIGTIVGDTSTDAAKSIVESSARGHRLILDSITELNKKLDKVEYEVKKIRDPLHAMRDKNGDFSLFNRVR
>NZ_CP027432.2|WP_123353178.1|41720_41984_+|hypothetical-protein
MASYFKAQEINKVEKQQLPESTVAVYSNITPKNKEEAKKLEDEILFAIKREHQLDMNRLIRGKELPKKLQKYFPSDFGGSGVICLQF
>NZ_CP027432.2|WP_123353179.1|41964_42690_-|DUF3108-domain-containing-protein
MRYILLFLIAIFAYSKTYVATYSAKYGWFGTIATAKGVYERNETDYKIMTTVKTKGFAASISGHLTQTYISEGKVINGRLVPTHYIVDIKRHGDDYYRIYIFDHKNKSVIKKRYKNGKLTKEYKYYYAPDDILTLYWNLPLYLKDKKETYIFHAVGGSKKNGKVEITFPQGEELKELKKTFKVNGTYLKANLYNKVFAGDKGVLYLVIDPTNWVTVAGMVKNVLKIGDLKGKMDYLKIEDK
>NZ_CP027432.2|WP_123353180.1|42735_43659_+|D-2-hydroxyacid-dehydrogenase
MTIVFLDALTLGDVDFDRFRKFGEVKIYQTTPADKTLERVKDADIVVTNKVVIDKEIMDNSNIKFIQIAATGMNNVDLEYAKKKGIPVKNVAGYSTKAVVQQTFALVLGLLNKVCYFDEYTRNEYPNSEIFTHIKNWFEIAGKRWGIIGLGTIGKEVAKIAEAFGAEVVYYSTSGKNNNSEYKRVELEELMKTSDIISIHAPLNENTKNLIKEKELMMMKDNAVIVNLGRGGIINEKDLAKTLEKKDILVGLDVFEKEPVEKDNPILKFKDKTLLSPHIAWTSIEARNKLMDGIYKNIEEYVKQSGN
>NZ_CP027432.2|WP_123353181.1|43655_44456_-|mechanosensitive-ion-channel
MNQYLDLALTWGIKIIGAIAIYIIGKWIAKLLTNLFRKMLERSNTDVTLVKFLGDLVYFGLIVLVIIAALGTLGVNTTSFAAIIGAAGLAVGLALQGNIANFGAGVVLLFLRPFKVGDFVEAGGATGVVDQIGIFNTTFKTGDNRVIIVPNSNIIGGNITNYSREAIRRIDLVIGVGYEDDLKLVKSTLEEILANHPKVLKDPAPAVALAELADSSVNFNVRPWVKSEDYWGVRSELLEIIKTTFDEKGINIPYPQMDVHVDNKAA
>NZ_CP027432.2|WP_123353182.1|44517_45213_-|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKRFLGSMLLALNLYAAFPSWYYNIKDVKKQKKAFVEIMLPLIQAENKKIKALREKIIEIFNDPYYLMDPYKIAFLAKIAKIYKIKNITDKKEFLKKIDTIPPSLALAQAAIESGWGKSRFVRVANNIFGHWEYSNKGIKPKSRYENIKIAYSIKIFPSLEASIAAYMRNLNRNPAYKNFRNLRYKYEQEHKKFTGIIAANTMINYSQKKEEYVKMLKRMIKLNHWEKYDK
>NZ_CP027432.2|WP_123353183.1|45221_45773_-|ribonuclease-HII
MEICGIDEAGRGPIAGPLVFAGVVLLEDIDGITDSKKLTPKKRKELFEIIKQKSKHHIVWKWPEEIDQKGLSVCIKEALSEIKNTIKAKKYLFDGNSSFGVDGIETIIKGDLKIKEIGAASILAKVSRDEYMVFIDKKYPEYNFKKHKGYITKEHIELIKRYGFCEIHRKSYKLKELRQPTLF
>NZ_CP027432.2|WP_123353184.1|45754_46720_-|ATP-binding-protein
MQLPKKILDRKVKLSFKNTLITGPKRVGKTFLVFNFLKNFKGKYKYIDFSDHREKDLDFSGVDLVVLDNYDFQIPIPDKTTFIISNKNIEIEDFEKIELGGLDFEEFFAFDNTTNINQTFDRFLRLGNFPKLFSEEYFKDEYLKETFELLPYNKKILAFFFAHLGEKFTLYQIYQILKKEMKLSKDSFYKETNELLKNKIIFEVNKFESPKSPKKFFAYNFAFKSIMTNRKNPLHIFENIIFLELNKKEVYYKDTLSFYLPEEKRGILVLPFANEEIAQEKLKKVTDVEKVDIITISNEFEITNDKFEVEVTPFWRWRFAE
>NZ_CP027432.2|WP_123353185.1|46747_47791_-|MFS-transporter
MDKKFFILISVYYFLFFTLIGDYVIFLPKYFSSFFTPAQIGIIFAMMPIARFLTPFIFLKKPLTKRDFLLAIIVSSLSSVLLFTKNFYLISLFFFILGASFSIIFPYIEAVAIEKLKEKYGKSRLFGSIGFMLFGIIAGYVNINLLIAFIVLLILTNLFSLFFLEDKTITKSSSKFSLLKEWKFWAAVVFLQISFGGFYSFFTIYVTSHGISKEWVGWLFAIGVSAEIIVFLIQHFFINKKPPLFWIKLSIFLTSVRWFILYLFPSNLLLIALSQTIHAFSFALFHTSALLYLNKKYENKTLAQQFYAGIAYGFAAFLGSMLAGFLYGDYLFLYESLFALIGFLVML
>NZ_CP027432.2|WP_123353186.1|47783_48173_-|HIT-family-protein
MTCPLCNVTDYFYKNSLFSLIFVDDIPGYIRLITNAHVKEFSDLSDQEAVEITLAVKKIEKILLKHTNADKINIASLGNMVPHLHIHIIPRFKNDPWWPGATFCEKTRDFTYPQIDLEKIKEEIIKSLG

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Crispr_ID: NZ_CP027432_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027432_2

167777-168138

Unclear

Consensus_repeat	Method
ACCAACCAATTACACAAGATGTTTTGAAAC	PILER-CR
ACCAACCAATTACACAAGATGTTTTGAAAC	CRISPRCasFinder
ACCAACCAATTACACAAGATGTTTTGAAAC	CRT

5 spacers

The CRISPR arrays of NZ_CP027432_2

>merge|NZ_CP027432|2|167777-168138|PILER-CR,CRISPRCasFinder,CRT
ACCAACCAATTACACAAGATGTTTTGAAACTAAAATTTCAAGCTGCTTTTTAGTAAAGCAGTGTTTGACCAACCAATTACACAAGATGTTTTGAAACGTCTTTTAAAGACTCGGCAAAAGCGCCTGGTTTTAAACCAACCAATTACACAAGATGTTTTGAAACATTTCAAAAGCCTCCGTAAACTCTTGCCCGTCTTTTACCAACCAATTACACAAGATGTTTTGAAACACTATAAAACTCATATACACCCCTTAATCAAGGTCAAACCAACCAATTACACAAGATGTTTTGAAACACGAACACATCGACGAAATAAAAGGCGCTCTTAAAAACCAACCAATTACACAAGATGTTTTGAAAC

>NZ_CP027432|2|2|167777-168138|PILER-CR
ACCAACCAATTACACAAGATGTTTTGAAAC	TAAAATTTCAAGCTGCTTTTTAGTAAAGCAGTGTTTG
ACCAACCAATTACACAAGATGTTTTGAAAC	GTCTTTTAAAGACTCGGCAAAAGCGCCTGGTTTTAA
ACCAACCAATTACACAAGATGTTTTGAAAC	ATTTCAAAAGCCTCCGTAAACTCTTGCCCGTCTTTT
ACCAACCAATTACACAAGATGTTTTGAAAC	ACTATAAAACTCATATACACCCCTTAATCAAGGTCAA
ACCAACCAATTACACAAGATGTTTTGAAAC	ACGAACACATCGACGAAATAAAAGGCGCTCTTAAAA
ACCAACCAATTACACAAGATGTTTTGAAAC

>NZ_CP027432|2|2|167777-168138|CRISPRCasFinder
ACCAACCAATTACACAAGATGTTTTGAAAC	TAAAATTTCAAGCTGCTTTTTAGTAAAGCAGTGTTTG
ACCAACCAATTACACAAGATGTTTTGAAAC	GTCTTTTAAAGACTCGGCAAAAGCGCCTGGTTTTAA
ACCAACCAATTACACAAGATGTTTTGAAAC	ATTTCAAAAGCCTCCGTAAACTCTTGCCCGTCTTTT
ACCAACCAATTACACAAGATGTTTTGAAAC	ACTATAAAACTCATATACACCCCTTAATCAAGGTCAA
ACCAACCAATTACACAAGATGTTTTGAAAC	ACGAACACATCGACGAAATAAAAGGCGCTCTTAAAA
ACCAACCAATTACACAAGATGTTTTGAAAC

>NZ_CP027432|2|2|167777-168138|CRT
ACCAACCAATTACACAAGATGTTTTGAAAC	TAAAATTTCAAGCTGCTTTTTAGTAAAGCAGTGTTTG
ACCAACCAATTACACAAGATGTTTTGAAAC	GTCTTTTAAAGACTCGGCAAAAGCGCCTGGTTTTAA
ACCAACCAATTACACAAGATGTTTTGAAAC	ATTTCAAAAGCCTCCGTAAACTCTTGCCCGTCTTTT
ACCAACCAATTACACAAGATGTTTTGAAAC	ACTATAAAACTCATATACACCCCTTAATCAAGGTCAA
ACCAACCAATTACACAAGATGTTTTGAAAC	ACGAACACATCGACGAAATAAAAGGCGCTCTTAAAA
ACCAACCAATTACACAAGATGTTTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027432.2\|WP_123352634.1\|162551_163493_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340411
NZ_CP027432.2\|WP_123352623.1\|170883_175263_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP027432.2\|WP_123352626.1\|168834_169101_-\|DUF4258-domain-containing-protein	unknown	unknown	gnl\|CDD\|379454
NZ_CP027432.2\|WP_123352633.1\|163494_164280_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912
NZ_CP027432.2\|WP_123352629.1\|165596_166877_-\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|224062
NZ_CP027432.2\|WP_123352620.1\|177305_177605_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123352628.1\|166873_167575_-\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NZ_CP027432.2\|WP_123352624.1\|170109_170655_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP027432.2\|WP_123352627.1\|168551_168842_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224021
NZ_CP027432.2\|WP_123352635.1\|162176_162452_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223766
NZ_CP027432.2\|WP_123352636.1\|161680_162124_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123352621.1\|176172_177309_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|183292
NZ_CP027432.2\|WP_123352637.1\|160189_161680_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP027432.2\|WP_139932231.1\|177815_179087_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP027432.2\|WP_123352619.1\|177605_177794_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123352631.1\|164955_165282_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376839
NZ_CP027432.2\|WP_123352630.1\|165331_165610_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123352632.1\|164266_164959_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP027432.2\|WP_123352622.1\|175546_176164_+\|recombination-protein-RecO	unknown	unknown	gnl\|CDD\|184387
NZ_CP027432.2\|WP_139932230.1\|169257_169965_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP027432.2\|WP_123352634.1\|162551_163493_+\|hypothetical-protein	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	4.42917e-09
NZ_CP027432.2\|WP_123352623.1\|170883_175263_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP027432.2\|WP_123352626.1\|168834_169101_-\|DUF4258-domain-containing-protein	gnl\|CDD\|379454	pfam14076, DUF4258, Domain of unknown function (DUF4258). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 95 and 124 amino acids in length.	2.18686e-09
NZ_CP027432.2\|WP_123352633.1\|163494_164280_+\|STAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	1.19476e-33
NZ_CP027432.2\|WP_123352629.1\|165596_166877_-\|lactate-utilization-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	8.52889e-143
NZ_CP027432.2\|WP_123352628.1\|166873_167575_-\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	2.12615e-35
NZ_CP027432.2\|WP_123352624.1\|170109_170655_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	2.00212e-21
NZ_CP027432.2\|WP_123352627.1\|168551_168842_-\|hypothetical-protein	gnl\|CDD\|224021	COG1096, COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis].	0.00049841
NZ_CP027432.2\|WP_123352635.1\|162176_162452_-\|hypothetical-protein	gnl\|CDD\|223766	COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones].	5.53491e-16
NZ_CP027432.2\|WP_123352637.1\|160189_161680_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	5.28331e-48
NZ_CP027432.2\|WP_139932231.1\|177815_179087_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	8.03011e-07
NZ_CP027432.2\|WP_123352631.1\|164955_165282_-\|hypothetical-protein	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	3.48557e-12
NZ_CP027432.2\|WP_123352632.1\|164266_164959_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	9.99051e-67
NZ_CP027432.2\|WP_123352622.1\|175546_176164_+\|recombination-protein-RecO	gnl\|CDD\|184387	PRK13908, PRK13908, recombination protein RecO.	2.70042e-94
NZ_CP027432.2\|WP_123352621.1\|176172_177309_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|183292	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase.	1.89494e-95

>NZ_CP027432.2|WP_123352628.1|166873_167575_-|(Fe-S)-binding-protein
MKIALHVPCYINELNPEIARKTLLILRHFGLNVSVPKNQTCCGQPFINSGQPTTLPEQFNEIFKDYEYIVSPSSSCTSTIRSQELEVSKKMYELCEFLHDILQVRDIAKNYPKKIALHNSCHSIRHLLEGAPSELNIPYFNKVKKVLGGEIVEAKRDECCGFGGVFSVKEGFISYVMGRSKLDDLISTGGEVITGVDFSCLMHLKGIAEKDGDDIEIKHISEIIYESIFGEEK
>NZ_CP027432.2|WP_123352629.1|165596_166877_-|lactate-utilization-protein
MKHYELAVKFYKEKGPRHDKSLWTIRQKRDKAIKEVPEWESLRVQASEIKDYVIENLQDLVDEFIKNAKNAGIEVVFAKDAQEHNQTVLKYLKEINAKKVVKSKSMLTEECGLNEFLEKNGIEVIDTDLGERIVQLRGEKPSHIVLPAIHTTKEDVAEILGEENTDPTYLTHKMRELLRKEFLSADAGLSGANFLVADKGWAVVCTNEGNADLGAVLPPLHIISVGVEKLVPNMNDLGVFLRMLARNATGQKITTYTSIFGKKENGKRVIVLVDNGRFERLNSEFKETLKCIRCSACLTTCPVFRRSGGHAYRYVIPGPIGSLLAPLSDKEKYKDLPFACTLCSSCEMVCPVKIPFSKQLVKMREYVTKENIALKLAEKSMHHPQAFKLFSTILRLTPKPVLKTALKEWSRYKALPKIPKKRFISL
>NZ_CP027432.2|WP_123352630.1|165331_165610_+|hypothetical-protein
MKGMGFAKGMGAKGMVAKGGFLKGIFGFVGGIFKLLFFGFFLIIFVIVALALFFMMKRKATEPKYDKPHYTRKKEDDDIIDAEIIENYPTKR
>NZ_CP027432.2|WP_123352631.1|164955_165282_-|hypothetical-protein
MDEFVKNLKIAGGEILEEIPQNWYVTRAKFGVAENGAVWVEEYTKELFLSENVAIKLPKNEIYEKMTDVMDKIQNPGVFISGPSKTADVESFLVFGAHGPKRLGVIFI
>NZ_CP027432.2|WP_123352632.1|164266_164959_+|GGDEF-domain-containing-protein
MEKYKFGESEVFSSFPITKSFFDKWIKNRCGKVESDDKKFCVIREDDNTYLISSSKCFNSYISKLTENAIFDSLTGAYNKKEILEALKKQLENYIRYKKEPFSVMIFDIDFFKKVNDTYGHLAGDFILKEFVKIIKKLIRKSDILGRFGGEEFVLILPNTKISGAMKLAERIKNAIENHTFNFNSTPIKVTTSIGITSASLTDSVDSLLARADEALYEAKRKGRNRIEYR
>NZ_CP027432.2|WP_123352633.1|163494_164280_+|STAS-domain-containing-protein
MKEILKEIIEKEADDLIRYWVEEFPEEERDEEARYYEDFLSFFEECVEKDLDIHSPESEALKTFLEKIIEILGEDRFFNFKNSVYTCYLKFPIMKKLEEKKAFEYDIIKKLTIFFEALTSRIIVDLLKKNEQVTMSAMNELEEREAPIAEIWDGVLMLSIVGTLDSNRVLKIIDKILEKLDKREIEHVIVDIGAIHDMNSEVARQIIKLNNAIHFMGSNAYLTGITPAIAKSLTHLDIKLGDIKTFSTTKKAMEHILHGEI
>NZ_CP027432.2|WP_123352634.1|162551_163493_+|hypothetical-protein
MRLVKRYKINRDVDLIYAKRDLSNFLKREKKELVDFFVFATMELGTNLIKHANGGEIWLLEQDESFLLASLDEGPGIKDTSWCVQKGNTTYKNSLGLGLYSLSNNESYEFEIFSSEDMGSVFLLKPKIENSEVFFQIPYLNEKYSGDLIVKKNKFYLFADVSGHGKKAWQSGQFIKDFFLKRPVTLLFCDEFFKDLHKSLKKNSLRSCVICIAENLPSKVNLCGVGNIGIFYKNIEGVRQYSFKSGIVGEVFTTSSSFSFEKENAKVILKTDGIDDNVIREILKNELSNEMTAISVLFFSKRNDDKSILIIGE
>NZ_CP027432.2|WP_123352635.1|162176_162452_-|hypothetical-protein
MDKKFEEMNIKEKIEAIEEVLKKDILPMLAFDGGYAEVVDVRDAQNDETHVFIRYGGACAACSSAGGATLFAIEETLRKKLNSDKIRVFPI
>NZ_CP027432.2|WP_123352636.1|161680_162124_-|hypothetical-protein
MKLLRYLFYLLFVIAFFAPMIANIYITQNPNETLKTYYVVIFKYFNLIYYAVLIIFLFASFKFKEAVIGGIIFILGYLGFIYFYNFYFAKMEAQKKAEELNAVVLSMDKLKDFGSYKLLYKKGFYVVVKKEKYDHTNPFGYVKDQRR
>NZ_CP027432.2|WP_123352637.1|160189_161680_-|glycosyltransferase-family-39-protein
MEKRLKIALFLAIAINFFFTLHLTPLFNLDEGAFSEATREMLKNHDFITTYLNGALRFDKPILIYWFQALSVTIFGLNEFALRLPSALAATFWAFGIYWFAKKIFDEKIGVLSAFFMVTALQIGLIAKAAIADALLNMFIAFSMFSLYLYIQNQNKKYLYFTFAFIGFGFLTKGPVAVLIPLATFFIYSLIKKDFKFFLKTTFDLKGIVLFLIIALPWYIAEYTAQGDKFIKGFFLKHNIDRFETSLEKHKGSLFYYIPVILIGMLPWTSLLLKYLTKLKNYLKEQNDFFLFGSIWFFFVFIFFSLSGTKLPHYVIYGYTPVFIFMGVAFKELKSEFLYSLPLILFVLALLILPSFALNLTKNKEAVIAIKTIMPLFNIWYYISLGAVLILSLLKLGKENKTIILGFSMVFILNYVGWIYAHARAIPVKQAAIFAKKHNIKNVYLETNLPSFSVYFDKITPRKKAKKGEVALIKSKNTKGYKVLFKKGLVALGVKE
>NZ_CP027432.2|WP_123352627.1|168551_168842_-|hypothetical-protein
MGRRRFRCKECNELIDFDELVYCDKCRAPLHDWCARGIDYPEFDGQYCSECAMELEDEIEDSDEYGYSYNRCPICGIYLIREENLVWCPNCGYEPY
>NZ_CP027432.2|WP_123352626.1|168834_169101_-|DUF4258-domain-containing-protein
MLQFTRHALMRMNQRGITKDMVELALEYGSFVKDKVVLSRKELKKLLKKYPSLKSQLLKLFDSKGLVVVFEDNYIITVYKPKKGLIYG
>NZ_CP027432.2|WP_139932230.1|169257_169965_+|hypothetical-protein
MEITISNLQNRFNFFSYSAFQKYKNDKCENKPFFSCKKDFYLYLENMYILEYNSRKKLFEGLNEIDFLILSLVLNEEDINDLSNFSSRIVNRLLEEEYISIFNTNNFSIGEKISDNQKLSLALQISNKLNNIKFKNEWSKFDEFTLFQILNNLKRFSSICDYYCNTFDISNISENTLIIFPNNKDVKIKLFFKFRNNKFEIYEEENINNKVVKTKLKEPKWISKFNSEKYSYMDS
>NZ_CP027432.2|WP_123352624.1|170109_170655_+|replication-initiation-protein
MATKTIEFVDRDKKKFVIYTIFYSPKYENGILRIKIDNEFHKYLMAVKNKYLRYRLENVMVLTSKYSFRLYEILKNELKMKKRQKRSLEVELDLDELRELLSVPGSYKWQDIKRQILEKSQKDFEKTDIDFEFEPIKQGRKIIAIKFKLIDKSKKLQTDNRIYKTDNDFTQWRTELQKKMA
>NZ_CP027432.2|WP_123352623.1|170883_175263_-|glutamate-synthase-large-subunit
MSMLEFKDNCGFGVIADIKGRPSHKMVNDALKALERMMHRGAIAADGKSGDGSGLLFSLPKDFFRKVANEYNIDLPENFGVGVIFLKDEKHKEIVEEYCEKNDLKILLWREVPVNTDALGELALKTLPKIYHVFIVPNSIIAIKRFEELLYLTRKEIENAIDDKDFYIPTFSSKKIAYKGLLMPNHIKEFYPDLADSDFKISFALFHQRFSTNTLPEWRLAQPFRFIAHNGEINSVQANRINALIKSESIKSDVFSQEELQRLLPIVRFDESDSSSLDRMIEFLIMNGMDFFKAVRALIPMPWQNAPYMDSELKAFYEYFSTRFEAWDGPAAVSITDGRYIGVVLDRNGLRPAKYVITKEGTILIASEYGVLDLDDEVIVERGKLQSGQMIGVDTKFGIVLKNKDIDEYLKSSNPYTKWLNEHMIYLQEYIENPYAIDEKIDVKELTYKQRYAGITKEVINTMIKPMMEEAKEPTGSMGDDTPLAAFSEYPYRSFNDFFRQKFAQVTNPPIDPLREKIVMSLNTGFGEIHNILDEAPEHAKRIKTTSPILTQTKLEVLKSFGDENSPRFESDYKNATYSTTFKENLKESLEKLTDKIVQDVRDNGVRIIFLDDSQVDKEHKTIPMAMVIGRLHKKLLDNKLRHLTSIVAMTGEVVNPHDAAVMVAYGATAIYPYLLFKTVCEICDEKGLDRDDALFNVHSALNKGLLKIMSKMGISTIASYRNSALMDIIGLSEEIASECFIGSKTLLPGLTYEDIEERVNKRHQEAFKEEKLPAGGVYKYRKGEEYHEIIPEVTRAFAKMIESGTKEDYEKFKNLVENRRPTYIRDLLDIKSDRKPISIDEVEPAENILKRFVGAAMSIGALSPEAHEIIAEAMNRLGAKSNSGEGGEDPVRNGTIKQSKIRQVASGRFGVTPEYLVNAEEIQIKVAQGAKPGEGGQLPGFKVTTYIAKLRHTTPGKTLISPPPHHDIYSIEDLAQLIFDLKQINPKAQISVKLVSTAGVGTIAAGVAKAYADQIVISGSEGGTGAASITSIQHAGNPWEIGLIEGHNALKENHLREYVALETDGALKIGRDVMFAALLGAEYYAFGTALLMAVKCIFCRSCQTNKCPVGITTQADEYRAKFKGSVEKVMNYMKLLAEDVREWLAKMGYKSLDEVIGRNDLITTKDIDLAKKFDFSIIFRQVEGPNTKQKENEPFDKNEFEKSLLKEVMETIKNPNHKSVVKAEICNLNRSFGALTSGVIAKYYGDAGLPEDSIVYKLEGVAGQSFGVFLSKGMTLELKGVANDYVGKGMAGGKIIITPKKEGAAAGNTCLYGATGGKLFVAGEVGERFAVRNSGAIAIVEGTGDHPCEYMTGGEVIILGKTGINFGAGMTGGVAFVYDKEHTFVDKINPELIEIRRIDIDENEKPKIYLKKRLIEYYNATGSKKAKFILDNFRSEVRHFWLVTPKDNRPPLDPNDMD
>NZ_CP027432.2|WP_123352622.1|175546_176164_+|recombination-protein-RecO
MRGFVLNTVRVRDEDLIVRILGEREVYTLYRFYGARHSYINVGNLIDFVIEESPKTTIKRLRNVVQLPFKFMFDLDKMLHYKIFVSLLNKHLQDVSKIDPFYFNWLKDITDVLHERDPKRLFIESYVKMIEKEGRLHDDFVCFLCESKVNEKVALARAFLPAHEKCIMSEGFEKEKISLLFKEKKSLLLDDNEIERLWRILNLGF
>NZ_CP027432.2|WP_123352621.1|176172_177309_+|FAD-dependent-oxidoreductase
MRVLIVGAGIIGMTMAWEWRKKHPDDEIVIIDKELHEAFHASGKNSGVLHAGFYYSSDSLKAKLTARGNKLMKGFCYSHNIPVNETGKLVVAKNENEIPTLFELAKRSVANEAGAYIITQEEAEKIDPNAKTHKYALYSPNTATVNPREVCRVLKEELQKKDVKFIFNMPFEKFNESYDFLINAAGLYADKIAHKFGVGLEYTMLPFKGLYRKYLGEDKIKTQIYPVPNIKNPFLGVHFTLMADNTIKIGPTAIPAFWRENYVGFERFDFREFLEIISLEAKLFFTNAFGFRDLALYEMRYYIPQNLINEAKKLVKNLRGEFKPMTPGIRAQLLNTQTLELVMDFLVEKNDNQIHILNAVSPAFTASFAFSKYVLEEL
>NZ_CP027432.2|WP_123352620.1|177305_177605_+|hypothetical-protein
MKKIAVLVKDNEVANYPADILVDGEVRKSFNLEFELNALGVDMLFGKSLPSNLIKKLRDSGIIFVKVNSLEDIEGLDFDIDFPDEFKNKRGWKCGKKGF
>NZ_CP027432.2|WP_123352619.1|177605_177794_+|hypothetical-protein
MEKLNKAIEKVKNADMDDKLKESVIEHLTEWYNEKKSLAWLEEKIEEAWEKILPILNEAGLI
>NZ_CP027432.2|WP_139932231.1|177815_179087_+|tetratricopeptide-repeat-protein
MKKGLFSLFVIFNLLFGYELIVKNEKDVKVLNDLGVKCEKTINGFVCAKSPDKMQLKRLQYYIKNNLGISSEIAGAKNLQPKNVSKEISKKRIVKNVVKTGYCIQVVSAKRSEGLLKIFEETKNLPLSRIEKIGPYFVLRVGEGKSEKELQTILKKTKKINKNAFIRKCDLIPQRIIKSNFNLKVEKKEKTKVPQGEVFNKTLSPEDKFKLMEKSFKEEKIDLAKRLSNQLKSSRSYKRDAFLVTVSVLMKKKKYKRVCNMLTQLSDFYKGNDLSVLREKSCFYYNYQKGIEYMNINPEMALEYLQKAEKYKSNNNLFFAKAIAYMNQNNYKKANDILKKLYQDTPDNTAVKLAYAKTLFNLGDFKTLEKIKDNNLAFFNHFELYLKAKKLYDEGKYKEANKIALQLFNYYPNNMLPTMVSMT

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Crispr_ID: NZ_CP027432_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027432_3

811243-813114

TypeI-B

Consensus_repeat	Method
ATAACACCGATACATTTGGAGTATTGAAAT	PILER-CR
ATAACACCGATACATTTGGAGTATTGAAAT	CRISPRCasFinder
ATAACACCGATACATTTGGAGTATTGAAAT	CRT

28 spacers

cas2,cas1,cas4,cas3,cas5

The CRISPR arrays of NZ_CP027432_3

>merge|NZ_CP027432|3|811243-813114|PILER-CR,CRISPRCasFinder,CRT
ATAACACCGATACATTTGGAGTATTGAAATCCAATTCTTGCATTACGAGGTATTGCTATATCTTTATATAACACCGATACATTTGGAGTATTGAAATGCTGTAAGGTTTTCGACTTTGTCTGTTGCGGTTGTAATAACACCGATACATTTGGAGTATTGAAATTTTTTTATAAGTTTTTCCGTGTCTTTGTTCCCGAGCAAATAACACCGATACATTTGGAGTATTGAAATAGATTATGTTTAAACTCTTTCTCAAAAGTCTGCTCGGATAACACCGATACATTTGGAGTATTGAAATATATTCCCTAACGGGGGTTGAGCCTGAACTTGAAGGCATAACACCGATACATTTGGAGTATTGAAATTTTCGTATTTTAATTTTTCCAATTTAACTCCTTTTAAATAACACCGATACATTTGGAGTATTGAAATAAAGCAACAGCGTCAAGCTCACTCAAATCAATCGATAACACCGATACATTTGGAGTATTGAAATTCTTAGAATAGGCAGTTTTAACGTACTTTTTAAGATAACACCGATACATTTGGAGTATTGAAATTTATAATCTAAAGACTTAGTTAAATACTTAGTAACAATAACACCGATACATTTGGAGTATTGAAATTAGTCAAATCTCCAGCTCTTTACATCTTCTTGTGTTATATAACACCGATACATTTGGAGTATTGAAATTTTAGAAATGCTTGGACTTGACGAAGAGGGTCGGATAACACCGATACATTTGGAGTATTGAAATTTTGAAGAGAGCTACGAACAAATTTCTTCCCTATATAACACCGATACATTTGGAGTATTGAAATGTTTTAAGCGTTTCATTTTCTTTTTGCTTATTTAATAACACCGATACATTTGGAGTATTGAAATAGGAAGGAGAAGTCGAGATAATTAATGCAGGAGAAAAATAACACCGATACATTTGGAGTATTGAAATCCAAAAAGAGATTAAGCACCCTGAATTTCCCGTTGTGGATAACACCGATACATTTGGAGTATTGAAATTACGCCTGTCTTTCGACTTCTTCTTTCTCAACCACATAACACCGATACATTTGGAGTATTGAAATTAAACGCATATGCTAAAAGAAGTAATGCCCTTTCCATAACACCGATACATTTGGAGTATTGAAATAGATTATAAAAAGCAAAATCAAAATTATCATTAAAAATATAACACCGATACATTTGGAGTATTGAAATAATTTTTTACCATATGTAAAGTTATTTTTAAAAAATAACACCGATACATTTGGAGTATTGAAATTCGTTTTAAGTATGTTACACTTCCTTCTGGTAAAATAACACCGATACATTTGGAGTATTGAAATTTTGCATTTAGTGCTTTTTGTTAATACTAAAAATACATAACACCGATACATTTGGAGTATTGAAATTTTGAAGAGAGCTACGAACAAATTTCTTCCCTATATAACACCGATACATTTGGAGTATTGAAATGTTTTAAGCGTTTCATTTTCTTTTTGCTTATTTAATAACACCGATACATTTGGAGTATTGAAATAATAACTTGGATTCCGAACGGTAATTTAGATTGTCTAATAACACCGATACATTTGGAGTATTGAAATTCTTTAGCCAAAAAATTATGACACTCATCTAGAACAATAACACCGATACATTTGGAGTATTGAAATATAGCCCTTAGTGCGTCATTTTCATACTCATTTTTTATAACACCGATACATTTGGAGTATTGAAATAACACGGCAAGGGATTTGCCGCTATTTGTGTATTTAATAACACCGATACATTTGGAGTATTGAAATAAAGAAATTGTAAGAGAAAAAATTGAGGAGGTGCTAATAACACCGATACATTTGTAGTATTGAAAT

>NZ_CP027432|3|3|811243-813114|PILER-CR
ATAACACCGATACATTTGGAGTATTGAAAT	CCAATTCTTGCATTACGAGGTATTGCTATATCTTTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GCTGTAAGGTTTTCGACTTTGTCTGTTGCGGTTGTA
ATAACACCGATACATTTGGAGTATTGAAAT	TTTTTTATAAGTTTTTCCGTGTCTTTGTTCCCGAGCAA
ATAACACCGATACATTTGGAGTATTGAAAT	AGATTATGTTTAAACTCTTTCTCAAAAGTCTGCTCGG
ATAACACCGATACATTTGGAGTATTGAAAT	ATATTCCCTAACGGGGGTTGAGCCTGAACTTGAAGGC
ATAACACCGATACATTTGGAGTATTGAAAT	TTTCGTATTTTAATTTTTCCAATTTAACTCCTTTTAA
ATAACACCGATACATTTGGAGTATTGAAAT	AAAGCAACAGCGTCAAGCTCACTCAAATCAATCG
ATAACACCGATACATTTGGAGTATTGAAAT	TCTTAGAATAGGCAGTTTTAACGTACTTTTTAAG
ATAACACCGATACATTTGGAGTATTGAAAT	TTATAATCTAAAGACTTAGTTAAATACTTAGTAACA
ATAACACCGATACATTTGGAGTATTGAAAT	TAGTCAAATCTCCAGCTCTTTACATCTTCTTGTGTTAT
ATAACACCGATACATTTGGAGTATTGAAAT	TTTAGAAATGCTTGGACTTGACGAAGAGGGTCGG
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGAAGAGAGCTACGAACAAATTTCTTCCCTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GTTTTAAGCGTTTCATTTTCTTTTTGCTTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AGGAAGGAGAAGTCGAGATAATTAATGCAGGAGAAAA
ATAACACCGATACATTTGGAGTATTGAAAT	CCAAAAAGAGATTAAGCACCCTGAATTTCCCGTTGTGG
ATAACACCGATACATTTGGAGTATTGAAAT	TACGCCTGTCTTTCGACTTCTTCTTTCTCAACCAC
ATAACACCGATACATTTGGAGTATTGAAAT	TAAACGCATATGCTAAAAGAAGTAATGCCCTTTCC
ATAACACCGATACATTTGGAGTATTGAAAT	AGATTATAAAAAGCAAAATCAAAATTATCATTAAAAAT
ATAACACCGATACATTTGGAGTATTGAAAT	AATTTTTTACCATATGTAAAGTTATTTTTAAAAA
ATAACACCGATACATTTGGAGTATTGAAAT	TCGTTTTAAGTATGTTACACTTCCTTCTGGTAAA
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGCATTTAGTGCTTTTTGTTAATACTAAAAATAC
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGAAGAGAGCTACGAACAAATTTCTTCCCTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GTTTTAAGCGTTTCATTTTCTTTTTGCTTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AATAACTTGGATTCCGAACGGTAATTTAGATTGTCTA
ATAACACCGATACATTTGGAGTATTGAAAT	TCTTTAGCCAAAAAATTATGACACTCATCTAGAACA
ATAACACCGATACATTTGGAGTATTGAAAT	ATAGCCCTTAGTGCGTCATTTTCATACTCATTTTTT
ATAACACCGATACATTTGGAGTATTGAAAT	AACACGGCAAGGGATTTGCCGCTATTTGTGTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AAAGAAATTGTAAGAGAAAAAATTGAGGAGGTGCTA
ATAACACCGATACATTTGTAGTATTGAAAT

>NZ_CP027432|3|3|811243-813114|CRISPRCasFinder
ATAACACCGATACATTTGGAGTATTGAAAT	CCAATTCTTGCATTACGAGGTATTGCTATATCTTTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GCTGTAAGGTTTTCGACTTTGTCTGTTGCGGTTGTA
ATAACACCGATACATTTGGAGTATTGAAAT	TTTTTTATAAGTTTTTCCGTGTCTTTGTTCCCGAGCAA
ATAACACCGATACATTTGGAGTATTGAAAT	AGATTATGTTTAAACTCTTTCTCAAAAGTCTGCTCGG
ATAACACCGATACATTTGGAGTATTGAAAT	ATATTCCCTAACGGGGGTTGAGCCTGAACTTGAAGGC
ATAACACCGATACATTTGGAGTATTGAAAT	TTTCGTATTTTAATTTTTCCAATTTAACTCCTTTTAA
ATAACACCGATACATTTGGAGTATTGAAAT	AAAGCAACAGCGTCAAGCTCACTCAAATCAATCG
ATAACACCGATACATTTGGAGTATTGAAAT	TCTTAGAATAGGCAGTTTTAACGTACTTTTTAAG
ATAACACCGATACATTTGGAGTATTGAAAT	TTATAATCTAAAGACTTAGTTAAATACTTAGTAACA
ATAACACCGATACATTTGGAGTATTGAAAT	TAGTCAAATCTCCAGCTCTTTACATCTTCTTGTGTTAT
ATAACACCGATACATTTGGAGTATTGAAAT	TTTAGAAATGCTTGGACTTGACGAAGAGGGTCGG
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGAAGAGAGCTACGAACAAATTTCTTCCCTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GTTTTAAGCGTTTCATTTTCTTTTTGCTTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AGGAAGGAGAAGTCGAGATAATTAATGCAGGAGAAAA
ATAACACCGATACATTTGGAGTATTGAAAT	CCAAAAAGAGATTAAGCACCCTGAATTTCCCGTTGTGG
ATAACACCGATACATTTGGAGTATTGAAAT	TACGCCTGTCTTTCGACTTCTTCTTTCTCAACCAC
ATAACACCGATACATTTGGAGTATTGAAAT	TAAACGCATATGCTAAAAGAAGTAATGCCCTTTCC
ATAACACCGATACATTTGGAGTATTGAAAT	AGATTATAAAAAGCAAAATCAAAATTATCATTAAAAAT
ATAACACCGATACATTTGGAGTATTGAAAT	AATTTTTTACCATATGTAAAGTTATTTTTAAAAA
ATAACACCGATACATTTGGAGTATTGAAAT	TCGTTTTAAGTATGTTACACTTCCTTCTGGTAAA
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGCATTTAGTGCTTTTTGTTAATACTAAAAATAC
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGAAGAGAGCTACGAACAAATTTCTTCCCTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GTTTTAAGCGTTTCATTTTCTTTTTGCTTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AATAACTTGGATTCCGAACGGTAATTTAGATTGTCTA
ATAACACCGATACATTTGGAGTATTGAAAT	TCTTTAGCCAAAAAATTATGACACTCATCTAGAACA
ATAACACCGATACATTTGGAGTATTGAAAT	ATAGCCCTTAGTGCGTCATTTTCATACTCATTTTTT
ATAACACCGATACATTTGGAGTATTGAAAT	AACACGGCAAGGGATTTGCCGCTATTTGTGTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AAAGAAATTGTAAGAGAAAAAATTGAGGAGGTGCTA
ATAACACCGATACATTTGTAGTATTGAAAT

>NZ_CP027432|3|3|811243-813114|CRT
ATAACACCGATACATTTGGAGTATTGAAAT	CCAATTCTTGCATTACGAGGTATTGCTATATCTTTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GCTGTAAGGTTTTCGACTTTGTCTGTTGCGGTTGTA
ATAACACCGATACATTTGGAGTATTGAAAT	TTTTTTATAAGTTTTTCCGTGTCTTTGTTCCCGAGCAA
ATAACACCGATACATTTGGAGTATTGAAAT	AGATTATGTTTAAACTCTTTCTCAAAAGTCTGCTCGG
ATAACACCGATACATTTGGAGTATTGAAAT	ATATTCCCTAACGGGGGTTGAGCCTGAACTTGAAGGC
ATAACACCGATACATTTGGAGTATTGAAAT	TTTCGTATTTTAATTTTTCCAATTTAACTCCTTTTAA
ATAACACCGATACATTTGGAGTATTGAAAT	AAAGCAACAGCGTCAAGCTCACTCAAATCAATCG
ATAACACCGATACATTTGGAGTATTGAAAT	TCTTAGAATAGGCAGTTTTAACGTACTTTTTAAG
ATAACACCGATACATTTGGAGTATTGAAAT	TTATAATCTAAAGACTTAGTTAAATACTTAGTAACA
ATAACACCGATACATTTGGAGTATTGAAAT	TAGTCAAATCTCCAGCTCTTTACATCTTCTTGTGTTAT
ATAACACCGATACATTTGGAGTATTGAAAT	TTTAGAAATGCTTGGACTTGACGAAGAGGGTCGG
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGAAGAGAGCTACGAACAAATTTCTTCCCTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GTTTTAAGCGTTTCATTTTCTTTTTGCTTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AGGAAGGAGAAGTCGAGATAATTAATGCAGGAGAAAA
ATAACACCGATACATTTGGAGTATTGAAAT	CCAAAAAGAGATTAAGCACCCTGAATTTCCCGTTGTGG
ATAACACCGATACATTTGGAGTATTGAAAT	TACGCCTGTCTTTCGACTTCTTCTTTCTCAACCAC
ATAACACCGATACATTTGGAGTATTGAAAT	TAAACGCATATGCTAAAAGAAGTAATGCCCTTTCC
ATAACACCGATACATTTGGAGTATTGAAAT	AGATTATAAAAAGCAAAATCAAAATTATCATTAAAAAT
ATAACACCGATACATTTGGAGTATTGAAAT	AATTTTTTACCATATGTAAAGTTATTTTTAAAAA
ATAACACCGATACATTTGGAGTATTGAAAT	TCGTTTTAAGTATGTTACACTTCCTTCTGGTAAA
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGCATTTAGTGCTTTTTGTTAATACTAAAAATAC
ATAACACCGATACATTTGGAGTATTGAAAT	TTTGAAGAGAGCTACGAACAAATTTCTTCCCTAT
ATAACACCGATACATTTGGAGTATTGAAAT	GTTTTAAGCGTTTCATTTTCTTTTTGCTTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AATAACTTGGATTCCGAACGGTAATTTAGATTGTCTA
ATAACACCGATACATTTGGAGTATTGAAAT	TCTTTAGCCAAAAAATTATGACACTCATCTAGAACA
ATAACACCGATACATTTGGAGTATTGAAAT	ATAGCCCTTAGTGCGTCATTTTCATACTCATTTTTT
ATAACACCGATACATTTGGAGTATTGAAAT	AACACGGCAAGGGATTTGCCGCTATTTGTGTATTTA
ATAACACCGATACATTTGGAGTATTGAAAT	AAAGAAATTGTAAGAGAAAAAATTGAGGAGGTGCTA
ATAACACCGATACATTTGTAGTATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027432.2\|WP_123351955.1\|817836_818592_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123351966.1\|808626_808893_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_139932248.1\|803419_804328_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238697
NZ_CP027432.2\|WP_123351962.1\|813203_814175_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|379118
NZ_CP027432.2\|WP_123351970.1\|802703_803423_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP027432.2\|WP_123351964.1\|809798_810794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP027432.2\|WP_123351956.1\|817512_817845_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
NZ_CP027432.2\|WP_123351953.1\|819731_821048_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NZ_CP027432.2\|WP_123351963.1\|810790_811090_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP027432.2\|WP_139932250.1\|808885_809197_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123351954.1\|818591_819104_-\|molybdopterin-adenylyltransferase	unknown	unknown	gnl\|CDD\|181837
NZ_CP027432.2\|WP_123351960.1\|814946_815612_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123351961.1\|814211_814841_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|366360
NZ_CP027432.2\|WP_139932251.1\|809136_809802_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123351957.1\|817094_817523_+\|ribose-5-phosphate-isomerase-B	unknown	unknown	gnl\|CDD\|235509
NZ_CP027432.2\|WP_123351959.1\|815742_816180_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NZ_CP027432.2\|WP_123351958.1\|816270_817050_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
NZ_CP027432.2\|WP_123351967.1\|808077_808563_+\|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP027432.2\|WP_139932249.1\|804459_805803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123351968.1\|805804_808081_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NZ_CP027432.2\|WP_139932248.1\|803419_804328_+\|hypothetical-protein	gnl\|CDD\|238697	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.	3.70707e-09
NZ_CP027432.2\|WP_123351962.1\|813203_814175_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|379118	pfam13310, Virulence_RhuM, Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	1.11444e-35
NZ_CP027432.2\|WP_123351970.1\|802703_803423_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.36709e-38
NZ_CP027432.2\|WP_123351964.1\|809798_810794_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.20977e-148
NZ_CP027432.2\|WP_123351953.1\|819731_821048_-\|malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP027432.2\|WP_123351958.1\|816270_817050_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	1.56757e-124
NZ_CP027432.2\|WP_123351954.1\|818591_819104_-\|molybdopterin-adenylyltransferase	gnl\|CDD\|181837	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional.	5.91511e-94
NZ_CP027432.2\|WP_123351961.1\|814211_814841_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|366360	pfam00899, ThiF, ThiF family. This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1.	1.08949e-48
NZ_CP027432.2\|WP_123351957.1\|817094_817523_+\|ribose-5-phosphate-isomerase-B	gnl\|CDD\|235509	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional.	8.49638e-83
NZ_CP027432.2\|WP_123351959.1\|815742_816180_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	3.92703e-15
NZ_CP027432.2\|WP_123351963.1\|810790_811090_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.11783e-22
NZ_CP027432.2\|WP_123351967.1\|808077_808563_+\|Dna2/Cas4-domain-containing-protein	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	7.53918e-57
NZ_CP027432.2\|WP_123351956.1\|817512_817845_+\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	0.00012226
NZ_CP027432.2\|WP_123351968.1\|805804_808081_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.22677e-27

>NZ_CP027432.2|WP_123351963.1|810790_811090_+|CRISPR-associated-endonuclease-Cas2
MKKDYKINYVFLMYDIADEESEAGKRRVNKVFKICKKYLTHHQKSVFRGEITPSRLLKLQKELKDVIDEELDFITIIKLKNKESFLEDTIGKKENDMFI
>NZ_CP027432.2|WP_123351964.1|809798_810794_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKTRYIFSMGEIKRKDNSIAFKNEKGWVYIPVEQVRELYFMNEVSLNSKFLDFASRAGIVLHFFNYHGNYSGTFYPKEKYISGKLTIKQALAYENERLIIAKAIVSAIAANIYEVLYHYYRHDKKELKPFLDYLKNDMPRFIEKADKINKLLFIEGNIWAGFYDSFKYFLPADFVMNKRVKRPPDNPINALISFGNTLLYTKTISAIYQTHLDQSISFLHEPSEARFSLSLDLSEAFKPIIVFRTIFDLVNRKKIRVEKHFEKKFNYALLNEDGKKIFIQAFEDRINEKFKHSKLKRMVSYNTAIKLDGYKLIKHLLENREFVPFLIKEKK
>NZ_CP027432.2|WP_139932251.1|809136_809802_+|hypothetical-protein
MLYAYSDKYNEKECESFSVIDAVRKLIGKDLSQYEIIKLLFDKYKDLKYFLGGLEKYLFELEKFDIDELIYLAKKENLKTKIPVSIYDENTSIETKINVILDLLYEEIYSVHYEFNLKAFYSKKIEDCFLYKTKQDLKHIDTFEIVNIGNKNVALINNIPFLLKEGFECNVNAKIINSKIDLFIKDDEVKLCNILEGDYYYFLEVDDYIFKIEKENFKVKI
>NZ_CP027432.2|WP_139932250.1|808885_809197_+|hypothetical-protein
MSDFKAYIKKCEYGWIEFYINDIKIYISFAYNPLFEIKESLEKLICGCENITFEIDEEGNEKRFEFFYSKPYWKNLSVKFIKLLCFTHIRISTMKKSAKVLVL
>NZ_CP027432.2|WP_123351966.1|808626_808893_+|hypothetical-protein
MRFIFNVIFLSLVFSGIFYYFERKSFIEIFFANLIVVFIFLGFFKLLFVFVSGLEEKVSNIDEKTKSGLLAGILIGLGIGWIIGSDDE
>NZ_CP027432.2|WP_123351967.1|808077_808563_+|Dna2/Cas4-domain-containing-protein
MITGTIVNYYFHCKTQMWLHYHKINLEDNSEDVRIGKVLHEISETKVDEVSFEGIKVDKITKDYVVEVKKSDSDIEAGKWQLLYYLYILKQKGVEKKGRLEVFEKNKQDKKRFVIELTEENEMKLLEILDDIEKILRSDTPLKPKFEGKCRKCAYYEYCFL
>NZ_CP027432.2|WP_123351968.1|805804_808081_+|CRISPR-associated-helicase-Cas3'
MFFSFFSHIHHQKPPELLKDHKKLTQKYLDKILQKVDLDRVIDSLGIEDKELVKQMIIDAVVMHDEGKRNPNFQYYIMKNKDFKDLVTDKGDTKHSYLSAKIFFEKYFDKVDKEVDDNEFYKKFYFLLGLSYVISKHHSKLGEFEKFVDDFSDEFDLKGILQYQSVDIYFGIEFYVVMKLIYSILISADYYATLEYMAEIEVDNFGEFREKEKFYEYEVIKNMDKFEGELNKIRREMYKKSEEKLLQNLDKNIFYLNAPTGAGKTLMSMNLALQFEPKKIFYVFPFNTLVEQTAGVFKEIFDDVVVINSTTPIEFDESDIRQYEIAYLNRAFYHYPFILTTHVNFFELLFGVGKEENFPFWQLAGSVVILDEIQSYNVDKWWYMVKMLNVYSKIIGFKLIIMSATLPRLDRLLNEKRFVDLLGSGYLKHPVFKDRVEVDFSLLDKEINFEDIEEVILSENKQKVLVEFIKKDRAKEFYEYMKDTDGYEVYLLTGDDNKLYREKVIKRCKSEARILLISTQVIEAGVDIDMDLGLKDISLLESEEQFIGRVNRNAKKNSKVYFFDMDKEADIYRGDIRLGFSIKSYKEVFLRKEYEKYYIDVLDALKKEKEKIKSTKSEIEIFKSKVINLDFEWVRKEMKLINVKTHTIFLSFNIDISEFDIEVKDEFLTDGMLDGCKVWEAYKEANEIENYAKRKIVLSQVMSLMQFFTFNVYSYVDIKKYNDLVGGIYLIKDYEEFVDDELKFDRKAFGEYQKGIFL
>NZ_CP027432.2|WP_139932249.1|804459_805803_+|hypothetical-protein
MEELKYYIYKNGYNVFELIDYELDFKNDIELINNLQNQSIIFIDRYCDNVDLLNYLKIYNSEKIKVILSDRTSNHNHFIENNFNDLKFYEFNLDMLTEREIEKIIEILFHIGIWGKYSNNKRVIKNKIIQEYYKLSLLLLDIFESEQIKKEIESLVKPFIKEKNLKETFFAILLLNLIDVEITKSLVEEVSGNDVIMNISFNELFGKDFKINSSLLSKFIISNYFTYSFIKEILLKIVEKAQDYKKYDVFWQKIERELLRFHFIEQIIPKEHKKIVLKQYFEKLKSKDKLQWLKNEPHYWLQYAMAEMANKNLQSAQQKLDTAYALKSSKYDFSYIDNQQARLYLLFALQENNGKKIFDYFQKANSLLTTKLDRYSVKHIATYKNLYKEKFRLFAKNDKRQFLDIVRNIYNDILKIKQDASDLYIMCNEYSKCENALRYILDKERLL
>NZ_CP027432.2|WP_139932248.1|803419_804328_+|hypothetical-protein
MNYYTENDLEKLKILISQGNSLLFIGAGFSTFATNLLNEPMPTGRELADKIAKKNNFEADGDLFYAVEKFLEKSSKNELISFLEEIFKTKKFDPILKEILKFNFRRIYTTNYDDVIEQVSNCLSINRKSIDAETSPENYFKFLNICVHINGYIKNLNENNFDKSFKLSENSYLEPDSFERSKWWYSFKKDLEASNAIIFVGYSLYDIEIKKLLYNNPFKEKTYFITKTDLKEKEAFKYKKYGKIINIGIKDFSKILKSVAPNKSKNDLQVFKKYEIDINSNIEIKDKDTDYLFTRGLLDKIN
>NZ_CP027432.2|WP_123351970.1|802703_803423_+|type-I-B-CRISPR-associated-protein-Cas5
MKAFKFNLSGKFAHFKKPDVNQDVYFTYSHIHKVALLGIFGAIMGLEGYHKDIKDYPDFYKKLKYLNVAIIPKKPYFNKKIQAFNNSVGYASGEQGGNLIVKEQWLENPSWDIVVEDDGSEEYNELKRRIDLMEFVYNPYLGKNEHFANISDFEEIELKKATKPLKCISLVPKDKVQMVSIGNRRDIKFYYEEYLPVGLKEKFLIYEYEKMIFSSWIVESEEMWEISGYGIEFIEKGIE
>NZ_CP027432.2|WP_123351962.1|813203_814175_+|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MKDIVKFIDGEIEIETKVENETVWITQKQMCELFGTAKSTISEHLKNIFESGELNRESTVRKFRTVKMEGNRKVSRNIEYYNLDVIISVGYRVNSKKATKFRQWATKILKDYILKGYALNQKRLEQNFNEFKQEIELLQKAIKQNLNEIEAKGFLDIITKYAKSWILLNQFDENRLEIPKGKEAKFILDYYEAVREIEKLKNELINKKEATELFGQERENSFKGIIRNIYQTFGSVDLLPTIEEKAANLFYYIVKDHPFVDGNKRIGAFMFVFFLSKNNYLYDENGELKINSNALVSLALLIAHSNPNEKDLIIKLIMNLIGE
>NZ_CP027432.2|WP_123351961.1|814211_814841_+|ThiF-family-adenylyltransferase
MFRRQIEVIGEKNQEKLSEKSVLIVGCGGLGNIIATTISCIGLRKIYLIDYDTIELHNIHRQFQFSKADIGKSKSKTLCEKINRCENTEIIALEGMFDENMKIDVDLVFDATDNFEVRKKIDSFAKAKKIPWIYASVEETRGQVGVFRKTSFEIFATKAHEVKGQLPPMVNLIGSIASMSGLKCLIGECKEVLYYVDFSEDLEIKKFSF
>NZ_CP027432.2|WP_123351960.1|814946_815612_+|hypothetical-protein
MKYIEAKISVELKKPVHFQYAPELISNYIKEAVSDSENYDYVFSNLGKANSEGMFEYDGVIALRSFSQEFIDKAVKNLLDFENEHFKTKNIYTFTSSFQPINTLYTLNPAFVLIDENIFWTFKSSGDFELLEKLILDDLVEKYERNFGEKLEDVKSFIKIMNIKNEKPFSYMYDDKKYFGYKVLINPKEDEISQKLAFTAVGCGLGHKNKEVGGGFTKILN
>NZ_CP027432.2|WP_123351959.1|815742_816180_-|helix-hairpin-helix-domain-containing-protein
MKKTLLALAFALSSLMAIDFNTASKAELMKVKGIGPKKAEAIIQYRKTHKIKSINDLKNIKGFNSKTISKIKNQKSALKDKANAKKAALKNKKSKMKAKMNSKKEALKNKKAKLNAKKSQLKKMKKEKMEKLDSKKSAFKNKVKF
>NZ_CP027432.2|WP_123351958.1|816270_817050_-|pyridoxine-5'-phosphate-synthase
MKLGVNIDHIATLRNARRINEPDPLMALEILKEAGADQVTIHLREDRRHITDFDAQRIVQNSFLPVNMECSINPEIIDIICTLKPHRATLVPERREEVTTEGGLDVVKFEKEIKNAIEKLHKNDIEVSLFIDPDTKQIEKSAELKAEMIELHTGRYANLFLALNTNINETPFKIFENLDRKTLKKELELELKLLKDATLYANDLNLEVAAGHGLNYQNVKEIANIKEIVELNIGHSIIANSVFLGLKEAIIKMKKLISS
>NZ_CP027432.2|WP_123351957.1|817094_817523_+|ribose-5-phosphate-isomerase-B
MKYFIGTDHAGFEVKPFVIEYLEKRGIEVEDLGTYSKESVDYPDYAHKVAEAVLANPGSMGILICGSGIGMSLAANKHKGIRAALCHDYYTAEMARRHNDANILCFGARIVGLGVIESILEAWLTHDFEGGRHLRRVEKIDI
>NZ_CP027432.2|WP_123351956.1|817512_817845_+|hypothetical-protein
MIFNWIFLTIVILVILILLFKMFYYKHLYEKTNTQKKQLQAALNEAELLIKKYQIQLQRSLGNLELLDEEVNKLKNDLKAIKNRNAQLRVENDQLKRKIRELENKIEALL
>NZ_CP027432.2|WP_123351955.1|817836_818592_-|hypothetical-protein
MKLTKEIIISIAALIAFAFTPLFNKISQNYIDNSLKQAAVSYAITRSINAAVSIVQNSSVSLGVGIQGNVAIGEALDPINDATERFSDLLTLSIWTLGAEKVLFELSNLPLFIAIVIVLALINIYFKSKFLSKLLILMIVLKIFIPFSSAVSFYSDKYLFSPQIQKINKELKPYVKEIKIEQKNQSFWDRIKQKATTFEEIKAYAAYYLSNTAKIINALINLGSIYLGKLLLNILILPLIFVYIVKNIRLE
>NZ_CP027432.2|WP_123351954.1|818591_819104_-|molybdopterin-adenylyltransferase
MTKIAIVTMSDRASQGIYEDKSGKEIEKFLSENITNDYEIVYRLIPDDYDTIVKTLKELVDMNCSLILTTGGTGPAPRDVTPEATKEVIEKELPGFGELMRMHSLKYVPTSILARGTAGVVKKSFILNLPGSPKAIKENLEAVWAAIPYAIDLIGGNYIESPTAFRPKKK
>NZ_CP027432.2|WP_123351953.1|819731_821048_-|malate-dehydrogenase
MANKPTFTKEEALEYHAKPVPGKIAIEVTKPVRDSRDLSIAYSPGVAIPCLEIDKDEELAYTYTNKANLVAVVSDSTAVLGLGTLKPVAGKPVMEGKAVLFKKFAFIDAYDIMLKERDPDKIVEIVEAISPTFGGINLEDIKAPKCFDIEKNAQARCDIPVFHDDQHGTAIISSAAIINWCKLEGKKLEDLRVVVIGAGAAGLAAAEMYKALGIKNMVLTDSRGPVTTKRDDLNKYKQPWAVDEDLETLADALKGADVVVGNSVANCITQDMVKTLAPNALLLTLANPDPEIKPELALEVRPDLYIGTGRSDYPNQVNNVLGFPFIFRGALDTHAKAVNMEMKIAAAYALADLAEKPVPQYVKDAYGGADLKFGKDYILPKPFDRRVFVDESVAVARAALESGVARIKVDDIDKWVEGYKQHLINMLKEKEGIDYDAK

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Crispr_ID: NZ_CP027432_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027432_4

1329107-1329544

TypeIII

Consensus_repeat	Method
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	CRISPRCasFinder
GTCTCCAATTAACCTTCTACCCAAGAANGTAGAAAAT	CRT
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	PILER-CR

5 spacers

cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

The CRISPR arrays of NZ_CP027432_4

>merge|NZ_CP027432|4|1329107-1329544|CRISPRCasFinder,CRT,PILER-CR
AATCTCAATTTAGCTCCTACCAAAGAAAGTAGAAAATATAAACAAATATAGAAAAATCCTGGCAGAAGAACTTGGTTTCCCGTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAATCTGCGGGGATTGTTACAGCTGTTTATATGGCAGTAGTCCTGGTAGCGTCTCCAATTAACCCTCTACCCAAGAAAGTAGAAAATCTTATTTTACTATGGCAATGATGCTATCTATAACTTTTAGTGTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAATGAGGAAAGTTATATCTTCAAGGTGCTTCTTTGGTAAAGGAAGGTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAATTCTTGATAATTCTATAACGATAAACCTGTCTATATTTTATTTAGTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT

>NZ_CP027432|4|4|1329107-1329544|CRISPRCasFinder
AATCTCAATTTAGCTCCTACCAAAGAAAGTAGAAAAT	ATAAACAAATATAGAAAAATCCTGGCAGAAGAACTTGGTTTCCC
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	CTGCGGGGATTGTTACAGCTGTTTATATGGCAGTAGTCCTGGTAGC
GTCTCCAATTAACCCTCTACCCAAGAAAGTAGAAAAT	CTTATTTTACTATGGCAATGATGCTATCTATAACTTTTAGT
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	GAGGAAAGTTATATCTTCAAGGTGCTTCTTTGGTAAAGGAAG
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	TCTTGATAATTCTATAACGATAAACCTGTCTATATTTTATTTA
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT

>NZ_CP027432|4|4|1329107-1329544|CRT
AATCTCAATTTAGCTCCTACCAAAGAAAGTAGAAAAT	ATAAACAAATATAGAAAAATCCTGGCAGAAGAACTTGGTTTCCC
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	CTGCGGGGATTGTTACAGCTGTTTATATGGCAGTAGTCCTGGTAGC
GTCTCCAATTAACCCTCTACCCAAGAAAGTAGAAAAT	CTTATTTTACTATGGCAATGATGCTATCTATAACTTTTAGT
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	GAGGAAAGTTATATCTTCAAGGTGCTTCTTTGGTAAAGGAAG
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	TCTTGATAATTCTATAACGATAAACCTGTCTATATTTTATTTA
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT

>NZ_CP027432|4|4|1329188-1329544|PILER-CR
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	CTGCGGGGATTGTTACAGCTGTTTATATGGCAGTAGTCCTGGTAGC
GTCTCCAATTAACCCTCTACCCAAGAAAGTAGAAAAT	CTTATTTTACTATGGCAATGATGCTATCTATAACTTTTAGT
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	GAGGAAAGTTATATCTTCAAGGTGCTTCTTTGGTAAAGGAAG
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT	TCTTGATAATTCTATAACGATAAACCTGTCTATATTTTATTTA
GTCTCCAATTAACCTTCTACCCAAGAAGGTAGAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027432.2\|WP_123353376.1\|1333366_1334227_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP027432.2\|WP_123353372.1\|1337709_1339251_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213356
NZ_CP027432.2\|WP_123353375.1\|1334230_1335199_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|273855
NZ_CP027432.2\|WP_123351456.1\|1320158_1320950_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NZ_CP027432.2\|WP_123351451.1\|1325872_1326382_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|234762
NZ_CP027432.2\|WP_123353378.1\|1332150_1332999_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_CP027432.2\|WP_123353377.1\|1332998_1333370_-\|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	unknown
NZ_CP027432.2\|WP_123351453.1\|1323796_1324585_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP027432.2\|WP_123351449.1\|1327419_1327659_+\|tetratricopeptide-repeat-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123353373.1\|1336597_1337713_-\|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NZ_CP027432.2\|WP_123352673.1\|1340224_1341052_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP027432.2\|WP_123351454.1\|1322898_1323687_+\|flagellar-hook-basal-body-protein	unknown	unknown	gnl\|CDD\|227125
NZ_CP027432.2\|WP_123353379.1\|1330187_1332179_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP027432.2\|WP_123351455.1\|1320952_1322767_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP027432.2\|WP_123351450.1\|1326368_1327433_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP027432.2\|WP_123351452.1\|1324846_1325791_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027432.2\|WP_123353374.1\|1335176_1336598_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP027432.2\|WP_123353380.1\|1329927_1330188_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP027432.2\|WP_123351447.1\|1327912_1328959_+\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NZ_CP027432.2\|WP_123351448.1\|1327658_1327904_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP027432.2\|WP_123353376.1\|1333366_1334227_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.02605e-36
NZ_CP027432.2\|WP_123353372.1\|1337709_1339251_-\|hypothetical-protein	gnl\|CDD\|213356	cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	6.3533e-05
NZ_CP027432.2\|WP_123351447.1\|1327912_1328959_+\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	1.01685e-48
NZ_CP027432.2\|WP_123351456.1\|1320158_1320950_-\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	6.94537e-119
NZ_CP027432.2\|WP_123351451.1\|1325872_1326382_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|234762	PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed.	2.63798e-104
NZ_CP027432.2\|WP_123351453.1\|1323796_1324585_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	2.44132e-158
NZ_CP027432.2\|WP_123353375.1\|1334230_1335199_-\|hypothetical-protein	gnl\|CDD\|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	3.64839e-09
NZ_CP027432.2\|WP_123352673.1\|1340224_1341052_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.16386e-144
NZ_CP027432.2\|WP_123351454.1\|1322898_1323687_+\|flagellar-hook-basal-body-protein	gnl\|CDD\|227125	COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion].	1.11595e-68
NZ_CP027432.2\|WP_123351455.1\|1320952_1322767_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP027432.2\|WP_123351450.1\|1326368_1327433_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP027432.2\|WP_123353378.1\|1332150_1332999_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.67502e-22
NZ_CP027432.2\|WP_123353380.1\|1329927_1330188_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.15434e-16
NZ_CP027432.2\|WP_123353379.1\|1330187_1332179_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.0326e-70
NZ_CP027432.2\|WP_123353374.1\|1335176_1336598_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.44364e-24

>NZ_CP027432.2|WP_123351447.1|1327912_1328959_+|CCA-tRNA-nucleotidyltransferase
MQKDIEFLKKFFAPYSKRVYFVGGCVRDEILGITPKEYDIEVYDIDPEKFDSLMAKLGAKGVGKSFFVYKWKNFDIALPRVETKVAKGHRGFEVSLTQDEKTASKRRDFTMNALMKNIFTGEILDFWGGIKDIQSKIIRHIDDNTFVEDSLRVLRAMQFASRLKFKVAPETIKLCQSIDLSDLSRERIYMEFEKMFKSKYLYYGFYYFIVLGIAKKLLNLEFSKKEFFHLAKLYKNNPLESFFLYHLIYYKHLNHEKVISALNLPNRLKKEIKIKKCPKTVTNRFLFALALKYPLKTFSILNLNCCEEWIKAHNLWDKKYRPKNIDPKNPRQSILNEIKSIPLKKVSP
>NZ_CP027432.2|WP_123351448.1|1327658_1327904_+|hypothetical-protein
MDIKETILETLQEIEEEEIFEHIEEEKQECDKEFLKHLRERLLVLFDGLQSPNTQNLDVKLDVTLNFLEYLLARLEEKINE
>NZ_CP027432.2|WP_123351449.1|1327419_1327659_+|tetratricopeptide-repeat-protein
MPLTKTYAKILESQGFKSEALDIYRKLLKKYPEDKELIEAIKRLEKRRKFKGVNVLKLKEFENINQKNRYDFEKWLSEL
>NZ_CP027432.2|WP_123351450.1|1326368_1327433_+|3-isopropylmalate-dehydrogenase
MKNYKIAVLKGDGIGPEIVDEAIKVLDAVASKEGFNLEYNEYLIGGSAIDVFDNPCPDETIKGCLNSDAVLFGAIGGPKWDNVEKQKRPESGLLKLRKSLGLFANIRPAIIFDELVNASTLKPEVIKGVDLTVVRELTGGIYFGEPRYKDDNKAYNTMIYTRDEIERIAKVAFEEAMRRNKKVTSVDKANVLEVSELWREVVEEVAKNYPEVELEHMYVDNAAMQLVRNPKQFDVILTGNIFGDILSDEASMIVGSIGLLPSASIGGKVGLFEPIHGSAPDIAGQGIANPIATILSAAMMLDYLGEKAAGDKIRDAIKQVLAKGYRTKDLASFDAKEVVTTTEMGSLIAEHAAN
>NZ_CP027432.2|WP_123351451.1|1325872_1326382_+|3-isopropylmalate-dehydratase-small-subunit
MNVITGRVWKFGDNIDTDLIIPARYLNTSDPHELAKHVMEDADPEFPKKVRPGDIIVAGKNFGSGSSREHAPIALKAAGVAAVIAKSFARIFYRNSFNMGLPIFELLEADEINEGDLVKIDLDKGIVHNIDTGKEYKFAPIPPFMQELIAAGGLINYAKEILKENNEKL
>NZ_CP027432.2|WP_123351452.1|1324846_1325791_-|hypothetical-protein
MKISSCFVKSFRDLFNVDVLKVVLISALPLFLLIFGFLYAFWDQIISVSSFLISWVPFSVLKLNGAFFILFFVWFILVLVSFAVVTAIFSPIFLNKLKERGYYLYSIITIGFFSLLYAVLLIKNWDYVFEEVKRLLTILPFDTVSKGVSAIVAVYIFYNFFILSLFFVIFIFSKPFLEAIRELEYPELEINVEDKFKYKRAILKDILIFIALFAVLFPLFFIPVINVGVQLFLWTKLYRDSFLYFVCNEYCSKDEFEKLSSQSFKTSFVAFLAALFNLLPIINFFAPFFAVIMFFHCVMELKLANKNISVKEEN
>NZ_CP027432.2|WP_123351453.1|1323796_1324585_+|flagellar-basal-body-rod-protein-FlgG
MVRSLYTAATGMMAQQMQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTATSTTTISPTGINVGLGVRPTAVTKIFTQGNLKQTNNNLDLAIQGDGFFQVQLPDGRIAYTRDGAFKLDADGNVVTSDGYKLIPEITLPPTTVQVSIGTDGTVSILEAGQTQMQQIGQIQLAKFINPAGLHSLGSNLYINTSASGDPIVATPGTDGIGEVRQGFLEMSNVQLVEEMTDLITGQRAYDAASKAIMTSDEMLQTVNNLKR
>NZ_CP027432.2|WP_123351454.1|1322898_1323687_+|flagellar-hook-basal-body-protein
MINGYYDVTGAMVTQFNRLNVISNNLANVNTPGFKQDDIIIGDFERLFSEKRSELPLENNTKEAAKWINHNLNKVPQIVEEYTNFSLGDMQRTSNPLDIALKRKNLFFIISAQDGERITRAGNFELDDKGYLVTKEGFKVLNTKNEPIKIPLNAKNLVIDSDANVYVNNQKIATLKIVSIDNPKTLKKVGDKMWEFVPGSESINTKNSTLQGFLEKSNVNPIREMTDLIETNRLVERYQKAMTTFMDDLQKDAIEKLGSVRA
>NZ_CP027432.2|WP_123351455.1|1320952_1322767_-|RNA-polymerase-sigma-factor-RpoD
MALPKELVKLFKDNKNGIVTYETIVNFFEKAPTKKDVKEILELAKENNVRLMTAAEVAKLKNLEDVVKNEEERERKREELAEDILKDKELLEWSRSDSPVRMYLREMGHIPLLDKDEEIEIFRRIQLGEEIILDAITSIPFLIDLVLNYKEPLLNRERRVKELFKNFVDEEEVEDESSKEGKRAKKISLREKRINELFKNLEKAKKEWEKVIDEYDRVLKDTSMPEDERLHKILQLTFKKKKVKDALNELGYTSKLINEIVKTVETALKGDKDFEKELKKKEYRLPLFNEQLRKLHKEILSKITELSKEDIAAMVPEHTMVNIYMDIKKLVEAKKASENMFGMDPKKLEVILEQLKRGKKIVTEAKEKMARANLRLVVSIAKKYTNRGLPFLDLIQEGNIGLMKAIDKFEFEKGYKFSTYATWWIRQAISRAIADQARTVRIPIHMIENINQINKIIRKHVQEEGKEPTLEVIAKEMKMPIEKVKQILKISKEPISLEAPVGEEEDGKFGDFIEDKSFSNPYEEVVQEDLRKHIEEILENLNEREKAVIKMRFGLMPDKSERTLEEIGKALNVTRERVRQIESSAIKKLRHPNIGKLLKNYLEG
>NZ_CP027432.2|WP_123351456.1|1320158_1320950_-|NAD+-synthase
MKKWELIEAFLIRFIKEEITKTGLKKGICGLSGGIDSAVVAVLAKKALGENFKAFMLPSQYSSKSSIEDAKELCEKFDIDYEIISIAPLLEAYPIDDKVRFGNFSARMRMAILYDKSAELGALVIGTSNKSELMLGYGTLFGDLASALNPIGDLYKTEIFEFAEYLGVPDSIINKPPSADLWQGQSDEKELGYAYSQIDPVLEDFVDNRATKEELLKKYDKDLVEFVIKKVYQNQFKRKPPIIAKLKSRTVGHDFLYERDIRL
>NZ_CP027432.2|WP_123353380.1|1329927_1330188_-|CRISPR-associated-endonuclease-Cas2
MYFVVSYDIKNDKRRDKIAELLNFYGIRVNYSVYEIKIEKKDLRKLIFEILKIVNKKEDSVRFYNISKNDILKSFEICNYLDILDF
>NZ_CP027432.2|WP_123353379.1|1330187_1332179_-|CRISPR-associated-endonuclease-Cas1
MLKLREIVTKEFVKSLFPLEYEELYSDIINGYIPSFVKSFELKKDDKVRVLSIEDEKDKKIEKIIYFALKSYANECFSNNNFAFVENRSVFDAINATHLLTKKYEKVLKGDIKNFFDSIDHNILTKMLLKYLDEDFVKILMLFFKNRSVKDNEYLFHETGIHQGSMISPFLSNFYLTPFDKFLEERCKFVRFADDFVIFSDNTEKILRDIKKFLKVFKLSLNEEKTYITSKSFVFLNIRFKKDTFVLENEKFNELLSKIARCREDKFQNIINSIRGYYLKVLNEKQLDILRENILNKLAKDDFIVEIDFLQIDKKEILKRKNDLKLQSLEKEVNKVLNKQIKIFTKEELNSVIFVHSSGISVGISKNSITLKKKGKIVKKFPLNLIKKIIIASKGVNISSNLVYFATKNGISIDFISKYEPYAEILTLNPKSHHMLIKQISILNTPKHLEIAKAFVKGKVKNQINYIKYLSKYHKFLKEDIKKFKSLKGIECIESLRGYEGEMANIYWNAIAKILDFEIPGRVTKGATDVFNSALNYAYAILYSRIQHALVKAGLNIYVSYLHSFQDNKPTLVYDLIEEFRAFVVDRVIVSMFNRNEKIEVIGGELTKSAKKLILDNVIEKLSSFTTYKNEKVKIENIILKQAYLLRKSIEEDVKYKPFIGRY
>NZ_CP027432.2|WP_123353378.1|1332150_1332999_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNLGYFYFKGMYKSLDSEDFLDLISGDDRKINRVNEKFKNIAKNFLNELNKEIKIENKKVSLSQYELVEFILSTKEPGFLIGTGYHHEIPRLKEQFINGFEFDYTTGLPKIPGSSIKGAIRDVFPLSDEEIDEKLKKLSKDEKFVVKELNEGSKEETISLLKNLFNKQYSLDDVLALRDKIFNNSDIFLDAEIIDNKNVFKEEFFTPHKSKFENPVPLKFLTIKGGVKFRFRFLLLKNLDVFLSVNERAQLYKQIILLNGLGAKTNLNFGRFEDVKTEGNSN
>NZ_CP027432.2|WP_123353377.1|1332998_1333370_-|hypothetical-protein
MKKRIENYIEKAIKLIEEDLSNKKIESLSSAFNGYISSFGAALIQSDLKIAVALFENKKSSKKADSTYLMNLILRLIDENAEEDMLLKYIINSDENEKALKNKIKDAAIAVKLAIRTFDLKDE
>NZ_CP027432.2|WP_123353376.1|1333366_1334227_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MVVDMYKLQNITNMHVGSGGVNYDIIENQVQKDVVTNLPIIYASSLKGALREHFENKHRGDNFIEFIFGSSPGDEKNNEEENEHKKEKKDEKKQTIPGSLVFFEAFMLTRPVRSNVKPYFNVTSPFIIEKLINYLEEFAILESLQEELKTFYNEIRDVEAVIFENIDDVYLEDYKAEYKQISKIPSIFPENLAILSYENFKNLSLPVVARNRLENGESKNLWYEEIVPKYSNFIFFIGRDNDEYIDKDDKPKIEQFFRSFESEKLYQIGANKTIGFGICKIEKVEG
>NZ_CP027432.2|WP_123353375.1|1334230_1335199_-|hypothetical-protein
MIKLITLKPLKPYFFGGEITFNDDSYIAYSRKLPQQTTLLGMLRKTLLLQNHLLTRKRKGYWIDKENDELAKKLVGETSFDIKCNFDLGVIKRISPLFLVKNGKKYFKRLNLDDFEYKDEILWNLKENRAYNPKDDYEELWGYFFSKNDRVKESEIFESVEQIGIQKESEKKGYYKKISYKLKDFEFGFLVEFDEERLEEFKDFTFKDDIVELGGERSAFKMKIADESEWLNYDEFEKHSFISDVFCKEPLKGGNVDFAITRDISFGYLYTKRKGDRLVFRKNETVYIYEKGSVLFNPKDNLLNHINSFKNLQKIGMNIIKE
>NZ_CP027432.2|WP_123353374.1|1335176_1336598_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MRYAGITIGPIYKTLLKARKTKELWAASYIFSFIMREIAKRFKDKKFILPYVADEVFEIKNVGLFNDRMIFEVDGVEEEDINKAIDEAIKKLSEMTGIDRDYLKEYIQIEYVIENVDNGNLVDEMYKYLDTKELFFQTPTKDKFKDFFKNVNNTKLAKFAFGRKHNSFTSLLEIALADVIDDDLREIVRQNDEKDINIFEDEDLNKKYNFQDYHKYVAIVQVDGDNMGKVNKLLDNASIEDYEKLSKDLFYFVKQALNRIKDFGGFVVYAGGDDLLFFAPIKNRDKNILDLAFELDEIYQENMKSWNDRLENTKTTLSFGINISYYKFPMYEALKNAQNLLFNKAKKTKNAIAIDVIKHSGQVFNAVIKKENVETIKALLNNDFKFDTSIIYKIDTYKKVLELLNEKDRFEAFFKNYFNENYSKNKDFYNLLAQTMYKLKTSNYPEDLNLKVIYFILRFNNFIRTNDDKTNNS
>NZ_CP027432.2|WP_123353373.1|1336597_1337713_-|hypothetical-protein
MKSVILLQQSDMIHFEALPKQKALLRISELKPRLTKFIKKDLKKADPILYEEFKDIIENKKIFPNINNNDISKGSPYFKISTDPKFVKVYKYKTFKSKRDNDFVRVGSYFGDYYAVNFGKVYIKIYSRIKRLEELVENALKSFLIINNLGQRQSKGFGSFVVDGTTKEEFEKVLKSFYKSIYKKELEEDVAPLEIIHKDYQLIKSGVNESFFKKGKYHQKRYEKSKLFKYFCNKNIRWEKKKIKEVLSEQGLMNRLEYYHPPVDCINDNIRSYKYIRGLLGVAPLINFKQKNSDYFKITISGEVDRYPSPITFKVFEDIYAVANDIDEDILNKKFFFKVGSRKVRIDTPSSFDLPDFMNYAFRELNWQRIK
>NZ_CP027432.2|WP_123353372.1|1337709_1339251_-|hypothetical-protein
MYSYHQFLFPFRFDYLKFSIKDNHEFYKNIQFNDRVKNSLNYLFEELKNNKWEYCPFSIQKSDYYNEFIYFHDFVKGTLFNLESYPKKSATSWFFEKKIEVNNVKIKVVKFNDEKIFNLKLSSITLRIFETGIGILSFEMENNQYYDFQDILDINEYFRRVYPPFVGDGFSLDEVMKKYMAKEIILDGIEYDIKEFENLKNISHPPISSLITRVLGDIFTQDVGTKDKFLIQPVIDERMFVVCWYGNNVLAKSLKSDFLEIENGKLKPINDVWYKFLFIDSGDKSVQDENMQKELLQKHTYTRWKNYGTFYGVSRYSFVVLTSDLDTLKKHCADFIVTHVKTVYYQMIILALAIRATILRFSDEVTAISDLDNENELFDRVSNIYKNYLKFRNKLYFKEITSQEQGIELYDKIRKVMNIDNDVKDLSSELIQLDTFSQMKLEHKENTEVSKLTKVATYLMPPTLAAGILGMNILDVKDKVEFLGMKWNVSGILWFFVITALSYGIIYFTKGKK
>NZ_CP027432.2|WP_123352673.1|1340224_1341052_+|formyltetrahydrofolate-deformylase
MKYTLLIDCDDKKGLVYKISKVLYENDFNIETQQEFVDKENNKFFFRAVIAGEVDKEKLKEQILKEVPCANIRIFKKRKKRLFLMATKEAHALGDILIKQYSGDLDVEIIGVIANRENLRDLVEKFDIPFYYIPAEGKSRVEHENEMLEIIKPTNPDFIILAKFMRILTPNFVEEFPNKIINIHHSFLPAFIGANPYKQAYDRGVKIIGATAHFVNNNLDDGPIIEQDVIRVDHEMSWEEMRLQGRDIEKIVLSRAIKLAIEDRIFVYANKTIIL

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Crispr_ID: NZ_CP027432_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027432_5

1339746-1340097

TypeIII

Consensus_repeat	Method
AATTTTCTACCTTCTTGGGTAGAAGGTTAATT	CRISPRCasFinder
AATTTTCTACCTTNTTNGGTAGAAGGTTAATTNGA	CRT
AATTTTCTACCTTCTTGGGTAGAAGGTTAATTGGA	PILER-CR

4 spacers

cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas2

The CRISPR arrays of NZ_CP027432_5

>merge|NZ_CP027432|5|1339746-1340097|CRISPRCasFinder,CRT,PILER-CR
TATTTTCTACCTTCTTGGGTAGAAGGTTAATTGGAGACTAAATAAAATATAGACAGGTTTATCGTTATAGAATTATCAAGAATTTTCTACCTTCTTGGGTAGAAGGTTAATTGGAAACTTAACGATATTTTGCTTGTTTTGTTAATTTTTCAAATTTTCTACCTTCTTGGGTAGAAGGTTAATTAGAGACATCTCTTCCATCTCTGTAGTCATCGATATACTCATAATATTTTCTAATTTTCTACCTTTTTAGGTAGAAGGTTAATTGGAAACGACAAGTAATCCATTTCCACGTTCTCGTAGAGATACCTTGTTACAATTTCCTACCTTACTTGGTAGGAGATAAATTAGA

>NZ_CP027432|5|5|1339746-1340094|CRISPRCasFinder
TATTTTCTACCTTCTTGGGTAGAAGGTTAATT	GGAGACTAAATAAAATATAGACAGGTTTATCGTTATAGAATTATCAAG
AATTTTCTACCTTCTTGGGTAGAAGGTTAATT	GGAAACTTAACGATATTTTGCTTGTTTTGTTAATTTTTCA
AATTTTCTACCTTCTTGGGTAGAAGGTTAATT	AGAGACATCTCTTCCATCTCTGTAGTCATCGATATACTCATAATATTTTCT
AATTTTCTACCTTTTTAGGTAGAAGGTTAATT	GGAAACGACAAGTAATCCATTTCCACGTTCTCGTAGAGATACCTTGTTAC
AATTTCCTACCTTACTTGGTAGGAGATAAATT

>NZ_CP027432|5|5|1339746-1340097|CRT
TATTTTCTACCTTCTTGGGTAGAAGGTTAATTGGA	GACTAAATAAAATATAGACAGGTTTATCGTTATAGAATTATCAAG
AATTTTCTACCTTCTTGGGTAGAAGGTTAATTGGA	AACTTAACGATATTTTGCTTGTTTTGTTAATTTTTCA
AATTTTCTACCTTCTTGGGTAGAAGGTTAATTAGA	GACATCTCTTCCATCTCTGTAGTCATCGATATACTCATAATATTTTCT
AATTTTCTACCTTTTTAGGTAGAAGGTTAATTGGA	AACGACAAGTAATCCATTTCCACGTTCTCGTAGAGATACCTTGTTAC
AATTTCCTACCTTACTTGGTAGGAGATAAATTAGA

>NZ_CP027432|5|5|1339747-1340015|PILER-CR
ATTTTCTACCTTCTTGGGTAGAAGGTTAATTGGAG	ACTAAATAAAATATAGACAGGTTTATCGTTATAGAATTATCAAGA
ATTTTCTACCTTCTTGGGTAGAAGGTTAATTGGAA	ACTTAACGATATTTTGCTTGTTTTGTTAATTTTTCAA
ATTTTCTACCTTCTTGGGTAGAAGGTTAATTAGAG	ACATCTCTTCCATCTCTGTAGTCATCGATATACTCATAATATTTTCTAATT
TTCTACCTTTTTAGGTAGAAGGTTAATTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027432.2\|WP_123353376.1\|1333366_1334227_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP027432.2\|WP_123351447.1\|1327912_1328959_+\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NZ_CP027432.2\|WP_123352682.1\|1348000_1348738_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NZ_CP027432.2\|WP_123353377.1\|1332998_1333370_-\|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	unknown
NZ_CP027432.2\|WP_123352681.1\|1347255_1348008_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|372602
NZ_CP027432.2\|WP_123353375.1\|1334230_1335199_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|273855
NZ_CP027432.2\|WP_123353373.1\|1336597_1337713_-\|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NZ_CP027432.2\|WP_123352673.1\|1340224_1341052_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP027432.2\|WP_123352676.1\|1341941_1342295_+\|nitrous-oxide-stimulated-promoter-family-protein	unknown	unknown	gnl\|CDD\|236683
NZ_CP027432.2\|WP_123352674.1\|1341293_1341416_+\|flagellar-M-ring-protein-FliF	unknown	unknown	unknown
NZ_CP027432.2\|WP_123353372.1\|1337709_1339251_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213356
NZ_CP027432.2\|WP_123352678.1\|1343246_1344512_+\|transporter	unknown	unknown	gnl\|CDD\|224978
NZ_CP027432.2\|WP_123352675.1\|1341408_1341879_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP027432.2\|WP_123352679.1\|1344479_1346459_-\|VacB/RNase-II-family-3'-5'-exoribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP027432.2\|WP_123353378.1\|1332150_1332999_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_CP027432.2\|WP_123352680.1\|1346468_1347263_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP027432.2\|WP_123352677.1\|1342281_1343199_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236276
NZ_CP027432.2\|WP_123353380.1\|1329927_1330188_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP027432.2\|WP_123353379.1\|1330187_1332179_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP027432.2\|WP_123353374.1\|1335176_1336598_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810

Protein	Function_ID	Function_description	E-value
NZ_CP027432.2\|WP_123353376.1\|1333366_1334227_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.02605e-36
NZ_CP027432.2\|WP_123351447.1\|1327912_1328959_+\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	1.01685e-48
NZ_CP027432.2\|WP_123352682.1\|1348000_1348738_-\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	8.73526e-08
NZ_CP027432.2\|WP_123353375.1\|1334230_1335199_-\|hypothetical-protein	gnl\|CDD\|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	3.64839e-09
NZ_CP027432.2\|WP_123352681.1\|1347255_1348008_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|372602	pfam13432, TPR_16, Tetratricopeptide repeat. This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.	2.19893e-06
NZ_CP027432.2\|WP_123352675.1\|1341408_1341879_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	5.4568e-89
NZ_CP027432.2\|WP_123352673.1\|1340224_1341052_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.16386e-144
NZ_CP027432.2\|WP_123352676.1\|1341941_1342295_+\|nitrous-oxide-stimulated-promoter-family-protein	gnl\|CDD\|236683	PRK10410, PRK10410, nitrous oxide-stimulated promoter family protein.	7.90454e-32
NZ_CP027432.2\|WP_123353372.1\|1337709_1339251_-\|hypothetical-protein	gnl\|CDD\|213356	cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	6.3533e-05
NZ_CP027432.2\|WP_123352678.1\|1343246_1344512_+\|transporter	gnl\|CDD\|224978	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism].	2.26723e-65
NZ_CP027432.2\|WP_123352679.1\|1344479_1346459_-\|VacB/RNase-II-family-3'-5'-exoribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	2.87747e-145
NZ_CP027432.2\|WP_123353378.1\|1332150_1332999_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.67502e-22
NZ_CP027432.2\|WP_123352680.1\|1346468_1347263_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	9.05919e-33
NZ_CP027432.2\|WP_123352677.1\|1342281_1343199_-\|hypothetical-protein	gnl\|CDD\|236276	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated.	1.63467e-71
NZ_CP027432.2\|WP_123353380.1\|1329927_1330188_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.15434e-16
NZ_CP027432.2\|WP_123353379.1\|1330187_1332179_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.0326e-70
NZ_CP027432.2\|WP_123353374.1\|1335176_1336598_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.44364e-24

>NZ_CP027432.2|WP_123353372.1|1337709_1339251_-|hypothetical-protein
MYSYHQFLFPFRFDYLKFSIKDNHEFYKNIQFNDRVKNSLNYLFEELKNNKWEYCPFSIQKSDYYNEFIYFHDFVKGTLFNLESYPKKSATSWFFEKKIEVNNVKIKVVKFNDEKIFNLKLSSITLRIFETGIGILSFEMENNQYYDFQDILDINEYFRRVYPPFVGDGFSLDEVMKKYMAKEIILDGIEYDIKEFENLKNISHPPISSLITRVLGDIFTQDVGTKDKFLIQPVIDERMFVVCWYGNNVLAKSLKSDFLEIENGKLKPINDVWYKFLFIDSGDKSVQDENMQKELLQKHTYTRWKNYGTFYGVSRYSFVVLTSDLDTLKKHCADFIVTHVKTVYYQMIILALAIRATILRFSDEVTAISDLDNENELFDRVSNIYKNYLKFRNKLYFKEITSQEQGIELYDKIRKVMNIDNDVKDLSSELIQLDTFSQMKLEHKENTEVSKLTKVATYLMPPTLAAGILGMNILDVKDKVEFLGMKWNVSGILWFFVITALSYGIIYFTKGKK
>NZ_CP027432.2|WP_123353373.1|1336597_1337713_-|hypothetical-protein
MKSVILLQQSDMIHFEALPKQKALLRISELKPRLTKFIKKDLKKADPILYEEFKDIIENKKIFPNINNNDISKGSPYFKISTDPKFVKVYKYKTFKSKRDNDFVRVGSYFGDYYAVNFGKVYIKIYSRIKRLEELVENALKSFLIINNLGQRQSKGFGSFVVDGTTKEEFEKVLKSFYKSIYKKELEEDVAPLEIIHKDYQLIKSGVNESFFKKGKYHQKRYEKSKLFKYFCNKNIRWEKKKIKEVLSEQGLMNRLEYYHPPVDCINDNIRSYKYIRGLLGVAPLINFKQKNSDYFKITISGEVDRYPSPITFKVFEDIYAVANDIDEDILNKKFFFKVGSRKVRIDTPSSFDLPDFMNYAFRELNWQRIK
>NZ_CP027432.2|WP_123353374.1|1335176_1336598_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MRYAGITIGPIYKTLLKARKTKELWAASYIFSFIMREIAKRFKDKKFILPYVADEVFEIKNVGLFNDRMIFEVDGVEEEDINKAIDEAIKKLSEMTGIDRDYLKEYIQIEYVIENVDNGNLVDEMYKYLDTKELFFQTPTKDKFKDFFKNVNNTKLAKFAFGRKHNSFTSLLEIALADVIDDDLREIVRQNDEKDINIFEDEDLNKKYNFQDYHKYVAIVQVDGDNMGKVNKLLDNASIEDYEKLSKDLFYFVKQALNRIKDFGGFVVYAGGDDLLFFAPIKNRDKNILDLAFELDEIYQENMKSWNDRLENTKTTLSFGINISYYKFPMYEALKNAQNLLFNKAKKTKNAIAIDVIKHSGQVFNAVIKKENVETIKALLNNDFKFDTSIIYKIDTYKKVLELLNEKDRFEAFFKNYFNENYSKNKDFYNLLAQTMYKLKTSNYPEDLNLKVIYFILRFNNFIRTNDDKTNNS
>NZ_CP027432.2|WP_123353375.1|1334230_1335199_-|hypothetical-protein
MIKLITLKPLKPYFFGGEITFNDDSYIAYSRKLPQQTTLLGMLRKTLLLQNHLLTRKRKGYWIDKENDELAKKLVGETSFDIKCNFDLGVIKRISPLFLVKNGKKYFKRLNLDDFEYKDEILWNLKENRAYNPKDDYEELWGYFFSKNDRVKESEIFESVEQIGIQKESEKKGYYKKISYKLKDFEFGFLVEFDEERLEEFKDFTFKDDIVELGGERSAFKMKIADESEWLNYDEFEKHSFISDVFCKEPLKGGNVDFAITRDISFGYLYTKRKGDRLVFRKNETVYIYEKGSVLFNPKDNLLNHINSFKNLQKIGMNIIKE
>NZ_CP027432.2|WP_123353376.1|1333366_1334227_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MVVDMYKLQNITNMHVGSGGVNYDIIENQVQKDVVTNLPIIYASSLKGALREHFENKHRGDNFIEFIFGSSPGDEKNNEEENEHKKEKKDEKKQTIPGSLVFFEAFMLTRPVRSNVKPYFNVTSPFIIEKLINYLEEFAILESLQEELKTFYNEIRDVEAVIFENIDDVYLEDYKAEYKQISKIPSIFPENLAILSYENFKNLSLPVVARNRLENGESKNLWYEEIVPKYSNFIFFIGRDNDEYIDKDDKPKIEQFFRSFESEKLYQIGANKTIGFGICKIEKVEG
>NZ_CP027432.2|WP_123353377.1|1332998_1333370_-|hypothetical-protein
MKKRIENYIEKAIKLIEEDLSNKKIESLSSAFNGYISSFGAALIQSDLKIAVALFENKKSSKKADSTYLMNLILRLIDENAEEDMLLKYIINSDENEKALKNKIKDAAIAVKLAIRTFDLKDE
>NZ_CP027432.2|WP_123353378.1|1332150_1332999_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNLGYFYFKGMYKSLDSEDFLDLISGDDRKINRVNEKFKNIAKNFLNELNKEIKIENKKVSLSQYELVEFILSTKEPGFLIGTGYHHEIPRLKEQFINGFEFDYTTGLPKIPGSSIKGAIRDVFPLSDEEIDEKLKKLSKDEKFVVKELNEGSKEETISLLKNLFNKQYSLDDVLALRDKIFNNSDIFLDAEIIDNKNVFKEEFFTPHKSKFENPVPLKFLTIKGGVKFRFRFLLLKNLDVFLSVNERAQLYKQIILLNGLGAKTNLNFGRFEDVKTEGNSN
>NZ_CP027432.2|WP_123353379.1|1330187_1332179_-|CRISPR-associated-endonuclease-Cas1
MLKLREIVTKEFVKSLFPLEYEELYSDIINGYIPSFVKSFELKKDDKVRVLSIEDEKDKKIEKIIYFALKSYANECFSNNNFAFVENRSVFDAINATHLLTKKYEKVLKGDIKNFFDSIDHNILTKMLLKYLDEDFVKILMLFFKNRSVKDNEYLFHETGIHQGSMISPFLSNFYLTPFDKFLEERCKFVRFADDFVIFSDNTEKILRDIKKFLKVFKLSLNEEKTYITSKSFVFLNIRFKKDTFVLENEKFNELLSKIARCREDKFQNIINSIRGYYLKVLNEKQLDILRENILNKLAKDDFIVEIDFLQIDKKEILKRKNDLKLQSLEKEVNKVLNKQIKIFTKEELNSVIFVHSSGISVGISKNSITLKKKGKIVKKFPLNLIKKIIIASKGVNISSNLVYFATKNGISIDFISKYEPYAEILTLNPKSHHMLIKQISILNTPKHLEIAKAFVKGKVKNQINYIKYLSKYHKFLKEDIKKFKSLKGIECIESLRGYEGEMANIYWNAIAKILDFEIPGRVTKGATDVFNSALNYAYAILYSRIQHALVKAGLNIYVSYLHSFQDNKPTLVYDLIEEFRAFVVDRVIVSMFNRNEKIEVIGGELTKSAKKLILDNVIEKLSSFTTYKNEKVKIENIILKQAYLLRKSIEEDVKYKPFIGRY
>NZ_CP027432.2|WP_123353380.1|1329927_1330188_-|CRISPR-associated-endonuclease-Cas2
MYFVVSYDIKNDKRRDKIAELLNFYGIRVNYSVYEIKIEKKDLRKLIFEILKIVNKKEDSVRFYNISKNDILKSFEICNYLDILDF
>NZ_CP027432.2|WP_123351447.1|1327912_1328959_+|CCA-tRNA-nucleotidyltransferase
MQKDIEFLKKFFAPYSKRVYFVGGCVRDEILGITPKEYDIEVYDIDPEKFDSLMAKLGAKGVGKSFFVYKWKNFDIALPRVETKVAKGHRGFEVSLTQDEKTASKRRDFTMNALMKNIFTGEILDFWGGIKDIQSKIIRHIDDNTFVEDSLRVLRAMQFASRLKFKVAPETIKLCQSIDLSDLSRERIYMEFEKMFKSKYLYYGFYYFIVLGIAKKLLNLEFSKKEFFHLAKLYKNNPLESFFLYHLIYYKHLNHEKVISALNLPNRLKKEIKIKKCPKTVTNRFLFALALKYPLKTFSILNLNCCEEWIKAHNLWDKKYRPKNIDPKNPRQSILNEIKSIPLKKVSP
>NZ_CP027432.2|WP_123352673.1|1340224_1341052_+|formyltetrahydrofolate-deformylase
MKYTLLIDCDDKKGLVYKISKVLYENDFNIETQQEFVDKENNKFFFRAVIAGEVDKEKLKEQILKEVPCANIRIFKKRKKRLFLMATKEAHALGDILIKQYSGDLDVEIIGVIANRENLRDLVEKFDIPFYYIPAEGKSRVEHENEMLEIIKPTNPDFIILAKFMRILTPNFVEEFPNKIINIHHSFLPAFIGANPYKQAYDRGVKIIGATAHFVNNNLDDGPIIEQDVIRVDHEMSWEEMRLQGRDIEKIVLSRAIKLAIEDRIFVYANKTIIL
>NZ_CP027432.2|WP_123352674.1|1341293_1341416_+|flagellar-M-ring-protein-FliF
MKKEEIKSQIIKERLREIFFKKPKAVAKIFEHLIKRQKSV
>NZ_CP027432.2|WP_123352675.1|1341408_1341879_+|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFNVVLFNPQIPPNTGNIGRLCVNAGAKLHIVKPIGFDISEKAVKRAGLDYWDKLDLKVWESVDEFLKNVDTSRCFFATTKTKTPYFQKKFKPGDYLIFGSETKGIDEKVLNEHKENCITIPMTREGRSLNLAVSVGIVLYEAIRQNFDEFIDFSQ
>NZ_CP027432.2|WP_123352676.1|1341941_1342295_+|nitrous-oxide-stimulated-promoter-family-protein
MTTDKFKSEIETLTKFFQIYCHDKHQNQYEKEYIIPYKDIKITKTISLCEDCHEMLKYSILRLQECPHDPKPRCRNCDEPCYEKSKYKQMAKMMRYSGMKLGLTKAAKRIKKIFKSS
>NZ_CP027432.2|WP_123352677.1|1342281_1343199_-|hypothetical-protein
MYKKDFDKLAQYPHFLLFYGNEFYLQEYEKIIQEKFKNANILKMYYDEYDFEIAKTHLNETSLFGGESVLIIKHNKIPPNIDKLKKYTKNSYLFFFYYGNKRPEVFGKNFVRFFEPNLRDKVELINKIANEKKVNITQEAKLFLAKSIEPSFLRSEIEKLSLYSDNIDVDVVKELVFIYKEESFEDLIVSILRGEDFFEKLNTMLEIVDFKRIIPATIRYVRDLYSYNLYIKKTGLSSLEGFLGYKLPFDIEKQRVDLAVRLKEKDYYELLKHLLNFELQMRNSEKNKEAIFWEAMSYLKTFKSF
>NZ_CP027432.2|WP_123352678.1|1343246_1344512_+|transporter
MKKTLLLSSVLVATLFASGYRIPEQSLKGIALSAANVANASGADSAYYNPANMVFNEDKNSFELLTTMIHLNKVKFQNDNGEVYYSRKEDFIVPQFHFTSKDHNGWRFGFSVTYPAGLSKRWDDTIPEAGAKEFTLKTIELNPVIAKKVNENIGVAFGIRFVKSEGIANVLGLKSNGDGTYTPLYSEYLNGDSFDKGWNAAVAFRSDDQTLRLAATYRSKINLSLSGDASGFYNLYLITGNPADAAKVVAFNTPGKVTVPLPAVLNLAIAKKFGKTTLEFVFDRTYWHSYKKLDFDFKDPAVNAIFGTPKPKDWKDSNTYRFGITHQCSEKLTAMLGYAYDESPVPNSTIDFSLPDSDKHIFSGGIKYKLDDRMSVGISALYTKQKTRRASVYDPITKTYTNGEFKEGGAVLFAAGFDYTF
>NZ_CP027432.2|WP_123352679.1|1344479_1346459_-|VacB/RNase-II-family-3'-5'-exoribonuclease
MKEFAYKLVKGIDRKDIPRDKRDIINDLIALGIVTSGKIIQLKSKYRIGKVDVTKKGFGFLIPIGVKEKDYLIEAHHLNGASKGDLVVAERLFNKKGRPKAKVVYILEKAFAYTVAYLTYEFKNGKKQPVLKNIKTDMPIFVSEKKKTLKKLPDGAVFKVNNYTAKIEEVLGVLQDPWVDEKISLALYNKKEEFSKKAIKEARAYGDYVDKSMYPDRMDLTDLPFCTIDPPTAKDHDDAIYFDKEKNELYVAIADVSEYVYLNGNIDREAKERGFSIYFPHKAIPMLPRELSENICSLKEHEDRLAFVFKITLNEKNEVVKEELFEAIINSHRKYSYDRVDEFLDGKFENIDDTDKEILEWLMPLWDRVKNIRAQRLKTGLEFESDEIKMTLDENGMIKDVTLEKETPSHKLIEDCMLLANKAAAKMIDFGIFRVHDKPSQTSLDELYSELGALGIDVDVDEKDFTKVVEGIQSQAKEMGIKKFVDKLIIRSQQQARYDATNTGHFALGFERYTHFTSPIRRYSDLTLHRILKATIKGEKKILDYILRNVEALVVKLSELEREAMKVEWDFYDRKYARYADLHIGDVYKGIIEDTEIPPIAKILEDKLLGARVFLKDKQKFNLFEKVDIEIVKANIATAKIKGKVKKEESESIIESGGE
>NZ_CP027432.2|WP_123352680.1|1346468_1347263_-|HDOD-domain-containing-protein
MNEKILTQIKSLPPLPDSVVKIQEITSNPDAGVKDLVPIIEKDPMLKADLLKAANSPLYGFARQIKTVDRAVALFGMTTVKGFVISFAIRNTLKFDLSAYGISEDQFQDVALKRNALAFNWYRLNKQKLDIIATDAFLIDIGAVIISLILITENRHNEFRNKLTPQNRYALEKEYVGATTPEITAELFKRWHFGQDLIIPIQYIDNPENAPEYNECAASLDVLRTTYDLLDPNNEENLNKAFEKIEKYNLDINQFKEALEKISN
>NZ_CP027432.2|WP_123352681.1|1347255_1348008_-|tetratricopeptide-repeat-protein
MHRYEELEKLYYKKKRNQIIVIILLALFFVLVYKLIEYANIQTGLKTQKIVENNITKEKLAKTSPKNNDNTTHNNSIKVSNQENSSKTEKKEKKVAKLEFILPNIAEVKTPVESKKITKNPEPKTVTKPTPKPKKVEKEITKQTLPSKLNLQVEKVDLQQLIASFNQNPNYDLAITISKEFFKRGNLKEAQKWALKANTMEPERVESWLQFADILLKQGKKDKAIQILRVYIDSYGENDEINRKLRSLNE
>NZ_CP027432.2|WP_123352682.1|1348000_1348738_-|ATP-binding-protein
MSKFADARELFRDVVDLRNYIPLKTSEKTKQDLINAIKQKEKMILLTGAAGSGKSLILKSVYEELKQNTDVFYINNPYLEIDSVLELIKTLGLETHHILLLDEAQLLTPETWENLRIYADKGNITIVFATHDTDVNKLLQKKHFKTRINYIIPVKNVSFSEMENFIYSKLLKNNFNDTAEMLTKKNFKKIYKYTRGSLRATNQLMFKLFDVVDYFYEKEPSRFSKNKIDNKYIEIAIMDLKAIDA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP027432_1	1.16\|40576\|35\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	40576-40610	35	NZ_CP040940.1	26846-26880	0	1.0
NZ_CP027432_2	2.5\|168073\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	168073-168108	36	NZ_CP027432.2	1167470-1167505	1	0.972

1. spacer 1.16|40576|35|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to position: 26846-26880, mismatch: 0, identity: 1.0

aaatctatatctctgctaagaataggcgttttata	CRISPR spacer
aaatctatatctctgctaagaataggcgttttata	Protospacer
***********************************

2. spacer 2.5|168073|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to position: 1167470-1167505, mismatch: 1, identity: 0.972

acgaacacatcgacgaaataaaaggcgctcttaaaa	CRISPR spacer
acgaacacatcgacgaaataaaaggcgcacttaaaa	Protospacer
**************************** *******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP027432_1	1.16\|40576\|35\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	40576-40610	35	NZ_CP040940	Cetia pacifica strain TB6 plasmid unnamed1, complete sequence	26846-26880	0	1.0
NZ_CP027432_1	1.4\|39783\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	39783-39818	36	MH579717	Pelagibacter phage HTVC021P, complete genome	16505-16540	6	0.833
NZ_CP027432_3	3.13\|812065\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812065-812098	34	NZ_CP054436	Staphylococcus saprophyticus strain UTI-035 plasmid pUTI-035-2, complete sequence	30306-30339	6	0.824
NZ_CP027432_3	3.23\|812720\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812720-812753	34	NZ_CP054436	Staphylococcus saprophyticus strain UTI-035 plasmid pUTI-035-2, complete sequence	30306-30339	6	0.824
NZ_CP027432_1	1.4\|39783\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	39783-39818	36	MH598798	Pelagibacter phage HTVC022P, complete genome	15163-15198	7	0.806
NZ_CP027432_5	5.6\|1339861\|37\|NZ_CP027432\|CRT	1339861-1339897	37	MN693224	Marine virus AFVG_25M317, complete genome	33437-33473	7	0.811
NZ_CP027432_5	5.6\|1339861\|37\|NZ_CP027432\|CRT	1339861-1339897	37	MN693583	Marine virus AFVG_25M274, complete genome	33047-33083	7	0.811
NZ_CP027432_5	5.10\|1339862\|37\|NZ_CP027432\|PILER-CR	1339862-1339898	37	MN693224	Marine virus AFVG_25M317, complete genome	33437-33473	7	0.811
NZ_CP027432_5	5.10\|1339862\|37\|NZ_CP027432\|PILER-CR	1339862-1339898	37	MN693583	Marine virus AFVG_25M274, complete genome	33047-33083	7	0.811
NZ_CP027432_1	1.4\|39783\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	39783-39818	36	NC_021789	Cellulophaga phage phi19:3, complete genome	15011-15046	8	0.778
NZ_CP027432_3	3.13\|812065\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812065-812098	34	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	135199-135232	8	0.765
NZ_CP027432_3	3.23\|812720\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812720-812753	34	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	135199-135232	8	0.765
NZ_CP027432_1	1.4\|39783\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	39783-39818	36	NC_021794	Cellulophaga phage phi18:3, complete genome	14002-14037	9	0.75
NZ_CP027432_1	1.4\|39783\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	39783-39818	36	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	93406-93441	9	0.75
NZ_CP027432_1	1.4\|39783\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	39783-39818	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	25293-25328	9	0.75
NZ_CP027432_1	1.4\|39783\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	39783-39818	36	NZ_CP050184	Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence	300816-300851	9	0.75
NZ_CP027432_1	1.9\|40115\|37\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	40115-40151	37	MK473382	Clostridium phage JD032, complete genome	33939-33975	9	0.757
NZ_CP027432_3	3.6\|811608\|37\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	811608-811644	37	MT773556	Myoviridae sp. isolate BML_4 genomic sequence	202866-202902	9	0.757
NZ_CP027432_3	3.13\|812065\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812065-812098	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1531778-1531811	9	0.735
NZ_CP027432_3	3.21\|812590\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812590-812625	36	MK764442	Flavobacterium phage FPSV-S1, complete genome	9397-9432	9	0.75
NZ_CP027432_3	3.21\|812590\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812590-812625	36	MK764448	Flavobacterium phage FPSV-S27, complete genome	15787-15822	9	0.75
NZ_CP027432_3	3.23\|812720\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812720-812753	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1531778-1531811	9	0.735
NZ_CP027432_1	1.9\|40115\|37\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	40115-40151	37	JX145342	Clostridium phage phiMMP04, complete genome	725-761	10	0.73
NZ_CP027432_1	1.10\|40182\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	40182-40217	36	AP018319	Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome	73259-73294	10	0.722
NZ_CP027432_1	1.10\|40182\|36\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	40182-40217	36	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	57804-57839	10	0.722
NZ_CP027432_3	3.13\|812065\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812065-812098	34	KY612839	Vibrio phage pVco-5, complete genome	63149-63182	10	0.706
NZ_CP027432_3	3.23\|812720\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812720-812753	34	KY612839	Vibrio phage pVco-5, complete genome	63149-63182	10	0.706
NZ_CP027432_1	1.14\|40443\|37\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	40443-40479	37	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	19862-19898	11	0.703
NZ_CP027432_3	3.13\|812065\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812065-812098	34	MN694316	Marine virus AFVG_250M341, complete genome	7021-7054	11	0.676
NZ_CP027432_3	3.13\|812065\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812065-812098	34	MN694631	Marine virus AFVG_250M342, complete genome	7008-7041	11	0.676
NZ_CP027432_3	3.23\|812720\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812720-812753	34	MN694316	Marine virus AFVG_250M341, complete genome	7021-7054	11	0.676
NZ_CP027432_3	3.23\|812720\|34\|NZ_CP027432\|PILER-CR,CRISPRCasFinder,CRT	812720-812753	34	MN694631	Marine virus AFVG_250M342, complete genome	7008-7041	11	0.676

1. spacer 1.16|40576|35|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040940 (Cetia pacifica strain TB6 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aaatctatatctctgctaagaataggcgttttata	CRISPR spacer
aaatctatatctctgctaagaataggcgttttata	Protospacer
***********************************

2. spacer 1.4|39783|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MH579717 (Pelagibacter phage HTVC021P, complete genome) position: , mismatch: 6, identity: 0.833

cttaattcttttattacttttttcattttactctcc	CRISPR spacer
cttaattctttaattagttttttcatttttcctttc	Protospacer
*********** **** ************ *..*.*

3. spacer 3.13|812065|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054436 (Staphylococcus saprophyticus strain UTI-035 plasmid pUTI-035-2, complete sequence) position: , mismatch: 6, identity: 0.824

gttttaagcgtttcattttcttttt---gcttattta	CRISPR spacer
attttaagcgcttcattttctttttcaagctcat---	Protospacer
.*********.**************   ***.**

4. spacer 3.23|812720|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054436 (Staphylococcus saprophyticus strain UTI-035 plasmid pUTI-035-2, complete sequence) position: , mismatch: 6, identity: 0.824

gttttaagcgtttcattttcttttt---gcttattta	CRISPR spacer
attttaagcgcttcattttctttttcaagctcat---	Protospacer
.*********.**************   ***.**

5. spacer 1.4|39783|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MH598798 (Pelagibacter phage HTVC022P, complete genome) position: , mismatch: 7, identity: 0.806

cttaattcttttattacttttttcattttactctcc	CRISPR spacer
cttaattctttaattaattttttcattattcacacg	Protospacer
*********** **** ********** * * * *

6. spacer 5.6|1339861|37|NZ_CP027432|CRT matches to MN693224 (Marine virus AFVG_25M317, complete genome) position: , mismatch: 7, identity: 0.811

aacttaacgat-attttgcttgttttgttaatttttca	CRISPR spacer
-acctagccttaatttttcttgtttttttaatttttca	Protospacer
 **.**.*  * ***** ******** ***********

7. spacer 5.6|1339861|37|NZ_CP027432|CRT matches to MN693583 (Marine virus AFVG_25M274, complete genome) position: , mismatch: 7, identity: 0.811

aacttaacgat-attttgcttgttttgttaatttttca	CRISPR spacer
-acctagccttaatttttcttgtttttttaatttttca	Protospacer
 **.**.*  * ***** ******** ***********

8. spacer 5.10|1339862|37|NZ_CP027432|PILER-CR matches to MN693224 (Marine virus AFVG_25M317, complete genome) position: , mismatch: 7, identity: 0.811

aacttaacgat-attttgcttgttttgttaatttttca	CRISPR spacer
-acctagccttaatttttcttgtttttttaatttttca	Protospacer
 **.**.*  * ***** ******** ***********

9. spacer 5.10|1339862|37|NZ_CP027432|PILER-CR matches to MN693583 (Marine virus AFVG_25M274, complete genome) position: , mismatch: 7, identity: 0.811

aacttaacgat-attttgcttgttttgttaatttttca	CRISPR spacer
-acctagccttaatttttcttgtttttttaatttttca	Protospacer
 **.**.*  * ***** ******** ***********

10. spacer 1.4|39783|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NC_021789 (Cellulophaga phage phi19:3, complete genome) position: , mismatch: 8, identity: 0.778

cttaattcttttattacttttttcattttactctcc	CRISPR spacer
tttaattctgttatttcttttttcattttgttatgt	Protospacer
.******** ***** *************..* * .

11. spacer 3.13|812065|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 8, identity: 0.765

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
attgttgaagtttcattttctttttcctttttta	Protospacer
.** * .. **************** *** ****

12. spacer 3.23|812720|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 8, identity: 0.765

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
attgttgaagtttcattttctttttcctttttta	Protospacer
.** * .. **************** *** ****

13. spacer 1.4|39783|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NC_021794 (Cellulophaga phage phi18:3, complete genome) position: , mismatch: 9, identity: 0.75

cttaattcttttattacttttttcattttactctcc	CRISPR spacer
tttaattctgttatttcttttttcattttctattta	Protospacer
.******** ***** ************* . .*.

14. spacer 1.4|39783|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.75

cttaattcttttattacttttttcattttactctcc	CRISPR spacer
atcaatgtttttattacttttttcattttattagtt	Protospacer
 *.*** .**********************.*  ..

15. spacer 1.4|39783|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 9, identity: 0.75

cttaattcttttattacttttttcattttactctcc	CRISPR spacer
atcaatgtttttattacttttttcattttattagtt	Protospacer
 *.*** .**********************.*  ..

16. spacer 1.4|39783|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 9, identity: 0.75

cttaattcttttattacttttttcattttactctcc	CRISPR spacer
atcaatgtttttattacttttttcattttattagtt	Protospacer
 *.*** .**********************.*  ..

17. spacer 1.9|40115|37|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 9, identity: 0.757

acgctatttttgacgcaaaaaatgagtatgaaaatga	CRISPR spacer
agggtatttttgacgcacaatatgagtatgcttgtaa	Protospacer
* * ************* ** *********   .*.*

18. spacer 3.6|811608|37|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 9, identity: 0.757

tttcgtattttaatttttccaatttaactccttttaa------	CRISPR spacer
tttcgtcttttaatttttctaattta------tttagaacttc	Protospacer
****** ************.******      ****.

19. spacer 3.13|812065|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.735

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
gcactagtattttcatgttgtttttgcttattta	Protospacer
*. .**.   ****** ** **************

20. spacer 3.21|812590|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MK764442 (Flavobacterium phage FPSV-S1, complete genome) position: , mismatch: 9, identity: 0.75

tttgcatttagtgctttttgttaatactaaaaatac	CRISPR spacer
attttttttattgctttttgtttatactaaaaaaca	Protospacer
 ** . **** *********** **********

21. spacer 3.21|812590|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MK764448 (Flavobacterium phage FPSV-S27, complete genome) position: , mismatch: 9, identity: 0.75

tttgcatttagtgctttttgttaatactaaaaatac	CRISPR spacer
attttttttattgctttttgtttatactaaaaaaca	Protospacer
 ** . **** *********** **********

22. spacer 3.23|812720|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.735

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
gcactagtattttcatgttgtttttgcttattta	Protospacer
*. .**.   ****** ** **************

23. spacer 1.9|40115|37|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 10, identity: 0.73

acgctatttttgacgcaaaaaatgagtatgaaaatga	CRISPR spacer
agggtatttttgacgcacaatatgagtatgcttgcaa	Protospacer
* * ************* ** *********   ...*

24. spacer 1.10|40182|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to AP018319 (Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome) position: , mismatch: 10, identity: 0.722

ctgctttaattaagttttgagctttttttagctttt	CRISPR spacer
ttgctgtaattaagttttgagttttttgaactccat	Protospacer
.**** ***************.*****  * ... *

25. spacer 1.10|40182|36|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 10, identity: 0.722

ctgctttaattaagttttgagctttttttagctttt	CRISPR spacer
ttgctgtaattaagttttgagttttttgaactccat	Protospacer
.**** ***************.*****  * ... *

26. spacer 3.13|812065|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to KY612839 (Vibrio phage pVco-5, complete genome) position: , mismatch: 10, identity: 0.706

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
tttttaagcgtttctttttcttgttgttccaact	Protospacer
 ************* ******* ***.*.   .

27. spacer 3.23|812720|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to KY612839 (Vibrio phage pVco-5, complete genome) position: , mismatch: 10, identity: 0.706

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
tttttaagcgtttctttttcttgttgttccaact	Protospacer
 ************* ******* ***.*.   .

28. spacer 1.14|40443|37|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 11, identity: 0.703

aaagcgatataatcttaaatctcttattcttatactc	CRISPR spacer
tgattaatataatctttaatctcttattattaatata	Protospacer
 .* ..********** *********** ***   *

29. spacer 3.13|812065|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MN694316 (Marine virus AFVG_250M341, complete genome) position: , mismatch: 11, identity: 0.676

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
tttctaagtgtttcattttctttttctccaaagt	Protospacer
 **.****.**************** ...*

30. spacer 3.13|812065|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MN694631 (Marine virus AFVG_250M342, complete genome) position: , mismatch: 11, identity: 0.676

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
tttctaagtgtttcattttctttttctccaaagt	Protospacer
 **.****.**************** ...*

31. spacer 3.23|812720|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MN694316 (Marine virus AFVG_250M341, complete genome) position: , mismatch: 11, identity: 0.676

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
tttctaagtgtttcattttctttttctccaaagt	Protospacer
 **.****.**************** ...*

32. spacer 3.23|812720|34|NZ_CP027432|PILER-CR,CRISPRCasFinder,CRT matches to MN694631 (Marine virus AFVG_250M342, complete genome) position: , mismatch: 11, identity: 0.676

gttttaagcgtttcattttctttttgcttattta	CRISPR spacer
tttctaagtgtttcattttctttttctccaaagt	Protospacer
 **.****.**************** ...*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

282617 : 290549

Moraxella_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123352516.1\|282617_283787_-	HAMP domain-containing histidine kinase	B5LWN0	Feldmannia_species_virus	5.3e-11	28.3
WP_123352515.1\|283779_284448_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.6e-28	34.7
WP_123352514.1\|284519_285503_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.2e-44	33.9
WP_096258123.1\|285809_286022_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_123352513.1\|286157_286553_+	DUF937 domain-containing protein	NA	NA	NA	NA
WP_123352512.1\|286594_287299_+	hypothetical protein	A0A1P8DJN0	Virus_Rctr41k	3.9e-25	35.3
WP_123352511.1\|287325_288963_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.1e-150	51.0
WP_123352510.1\|288962_290549_+	single-stranded-DNA-specific exonuclease RecJ	A0A0R6PDC6	Moraxella_phage	3.0e-49	43.8

DBSCAN-SWA_2

467550 : 476748

Cyanophage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123352324.1\|467550_468555_+	phosphate ABC transporter substrate-binding protein PstS	H6WG65	Cyanophage	2.7e-43	34.7
WP_123352323.1\|468612_469716_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_123352322.1\|469712_470522_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_123352321.1\|470518_471310_+	phosphate ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	6.6e-13	30.8
WP_123352320.1\|471373_472993_+	inorganic phosphate transporter	A0A0P0CDM4	Ostreococcus_lucimarinus_virus	5.8e-48	33.3
WP_123352319.1\|473147_474032_+\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	4.3e-05	34.5
WP_123352318.1\|474042_474525_+	hypothetical protein	NA	NA	NA	NA
WP_123352317.1\|474521_475124_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_123352316.1\|475120_475912_+	ParA family protein	F0PIG8	Enterococcus_phage	1.4e-15	30.9
WP_123352315.1\|475908_476748_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	3.5e-20	35.5

DBSCAN-SWA_3

641864 : 650552

Prochlorococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123352127.1\|641864_642572_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	9.9e-53	46.6
WP_123352161.1\|642581_643733_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	9.9e-26	31.2
WP_123352126.1\|644014_646627_+	AAA domain-containing protein	A0A223W0B1	Agrobacterium_phage	1.2e-114	36.5
WP_123352125.1\|646825_647200_+	hypothetical protein	NA	NA	NA	NA
WP_123352124.1\|647212_647794_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	2.8e-21	41.7
WP_123352123.1\|647796_649242_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.8e-08	70.0
WP_123352122.1\|649250_650552_+\|tRNA	glutamate--tRNA ligase	A0A1V0SI74	Klosneuvirus	1.7e-13	25.7

DBSCAN-SWA_4

753843 : 762861

Bacillus_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123352019.1\|753843_755223_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.5e-24	37.6
WP_123352018.1\|755419_757453_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	1.0e-113	37.0
WP_123352159.1\|757452_757746_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A218MMY6	uncultured_virus	2.0e-15	51.9
WP_123352017.1\|757746_759942_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	K4FB40	Cronobacter_phage	1.1e-158	50.3
WP_123352016.1\|759925_760639_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_123352015.1\|760604_760916_+	hypothetical protein	NA	NA	NA	NA
WP_123352014.1\|760908_761532_-	LexA family transcriptional regulator	A0A125RN88	Pseudomonas_phage	2.6e-12	26.1
WP_123352013.1\|761619_762861_+	DNA polymerase IV	I6RSM4	Salmonella_phage	6.5e-15	27.1

DBSCAN-SWA_5

1630226 : 1641567

Synechococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123353021.1\|1630226_1631369_-	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	1.0e-91	48.5
WP_123353020.1\|1631378_1632557_-	GDP-mannose 4,6-dehydratase	A0A0E3F8A7	Synechococcus_phage	3.6e-124	61.2
WP_123353019.1\|1632558_1632999_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_123353018.1\|1632995_1634363_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.1e-42	28.3
WP_123353017.1\|1634521_1635796_-	nucleotide sugar dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	3.4e-11	22.2
WP_123353016.1\|1635806_1636850_-	NAD-dependent epimerase	A0A2K9L4U8	Tupanvirus	1.5e-36	30.0
WP_123353082.1\|1636852_1638022_-	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	1.0e-115	58.2
WP_123353015.1\|1638018_1639020_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	6.5e-58	38.9
WP_123353014.1\|1639016_1639475_-	hypothetical protein	NA	NA	NA	NA
WP_123353013.1\|1639476_1639920_-	Sua5 YciO YrdC YwlC family protein	NA	NA	NA	NA
WP_123353012.1\|1639909_1640329_-	FliJ family protein	NA	NA	NA	NA
WP_123353011.1\|1640325_1641567_-	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	1.4e-70	34.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040940

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP027432

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection