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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP034169 Enterococcus avium strain 352 chromosome, complete genome 2 crisprs RT,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,WYL,cas14j,csa3,DEDDh,DinG 2 3 13 2
NZ_CP034168 Enterococcus avium strain 352 plasmid unnamed, complete sequence 1 crisprs NA 0 1 2 0

Results visualization

1. NZ_CP034169
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034169_1 137433-138974 Unclear NA
23 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034169_2 140636-140790 Unclear NA
2 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,RT

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP034169_1 1.5|137726|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 137726-137761 36 NZ_CP034169.1 1416560-1416595 0 1.0
NZ_CP034169_1 1.16|138449|37|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 138449-138485 37 NZ_CP034169.1 3326710-3326746 0 1.0

1. spacer 1.5|137726|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to position: 1416560-1416595, mismatch: 0, identity: 1.0

ttagaaacaggacaaattgagacagtagaaattacg	CRISPR spacer
ttagaaacaggacaaattgagacagtagaaattacg	Protospacer
************************************

2. spacer 1.16|138449|37|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to position: 3326710-3326746, mismatch: 0, identity: 1.0

tcttctgaataccgttgctagtcatagctgttcccac	CRISPR spacer
tcttctgaataccgttgctagtcatagctgttcccac	Protospacer
*************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP034169_1 1.19|138648|35|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 138648-138682 35 NZ_CP019949 Methylocystis bryophila strain S285 plasmid p1, complete sequence 72441-72475 7 0.8
NZ_CP034169_1 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 137463-137498 36 NZ_CP029399 Streptococcus suis strain HN105 plasmid unnamed1, complete sequence 17466-17501 8 0.778
NZ_CP034169_1 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 137463-137498 36 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 194748-194783 9 0.75
NZ_CP034169_1 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 137463-137498 36 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 196628-196663 9 0.75
NZ_CP034169_1 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 137463-137498 36 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 10363-10398 9 0.75
NZ_CP034169_1 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 137463-137498 36 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 25194-25229 9 0.75
NZ_CP034169_1 1.4|137660|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 137660-137695 36 NZ_CP042928 Bacillus cereus strain G1-1 plasmid unnamed, complete sequence 304407-304442 10 0.722
NZ_CP034169_1 1.4|137660|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT 137660-137695 36 NZ_CP040341 Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence 313264-313299 10 0.722

1. spacer 1.19|138648|35|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019949 (Methylocystis bryophila strain S285 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.8

gtcatcg--ggaaaatgcaacgagattctcgaaacgc	CRISPR spacer
--cttcgacgagaaatccaacgagattctcgaagcgc	Protospacer
  * ***  *..**** ****************.***

2. spacer 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029399 (Streptococcus suis strain HN105 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

caatcaaggaggaaatattatgaataaaactttagc	CRISPR spacer
aaattaaggaggaaataatatgaataaatttgaaac	Protospacer
 ***.************ ********** .*  *.*

3. spacer 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 9, identity: 0.75

caatcaaggaggaaatattatgaataaaactttagc	CRISPR spacer
ttaaataggaggaactaatatgaataaaactttaaa	Protospacer
. *   ******** ** ****************. 

4. spacer 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 9, identity: 0.75

caatcaaggaggaaatattatgaataaaactttagc	CRISPR spacer
ttaaataggaggaactaatatgaataaaactttaaa	Protospacer
. *   ******** ** ****************. 

5. spacer 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 9, identity: 0.75

caatcaaggaggaaatattatgaataaaactttagc	CRISPR spacer
ttaaataggaggaactaatatgaataaaactttaaa	Protospacer
. *   ******** ** ****************. 

6. spacer 1.1|137463|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 9, identity: 0.75

caatcaaggaggaaatattatgaataaaactttagc	CRISPR spacer
ttaaataggaggaactaatatgaataaaactttaaa	Protospacer
. *   ******** ** ****************. 

7. spacer 1.4|137660|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042928 (Bacillus cereus strain G1-1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

aacgttttaaatctgcagaatggctagatgccgata	CRISPR spacer
gctgttttaaatcttcagaatgactagatagccact	Protospacer
. .*********** *******.******. * *. 

8. spacer 1.4|137660|36|NZ_CP034169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040341 (Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

aacgttttaaatctgcagaatggctagatgccgata	CRISPR spacer
gctgttttaaatcttcagaatgactagatagccact	Protospacer
. .*********** *******.******. * *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 161937 : 226390 81 Enterococcus_phage(34.09%) tRNA,portal,capsid,terminase,transposase,integrase,protease attL 151283:151299|attR 202066:202082
DBSCAN-SWA_2 1058818 : 1116550 53 Bacillus_phage(23.08%) transposase,integrase attL 1071858:1071873|attR 1118359:1118374
DBSCAN-SWA_3 1371123 : 1443364 76 Enterococcus_phage(38.89%) tRNA,portal,capsid,terminase,transposase,integrase,protease attL 1377032:1377047|attR 1422724:1422739
DBSCAN-SWA_4 1905815 : 1971575 80 Streptococcus_phage(27.5%) holin,head,tail,portal,capsid,terminase,transposase,integrase,protease attL 1905710:1905740|attR 1949319:1949349
DBSCAN-SWA_5 3124896 : 3133983 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 3250503 : 3334562 93 Enterococcus_phage(33.33%) holin,portal,capsid,plate,transposase,terminase NA
DBSCAN-SWA_7 3393100 : 3451515 57 Bacillus_phage(22.22%) transposase,integrase attL 3426376:3426392|attR 3454813:3454829
DBSCAN-SWA_8 3454931 : 3487167 32 Bacillus_phage(22.22%) transposase,integrase attL 3479672:3479687|attR 3492480:3492495
DBSCAN-SWA_9 3519393 : 3531886 13 Streptococcus_phage(88.89%) transposase,protease NA
DBSCAN-SWA_10 4026894 : 4035447 10 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_11 4152645 : 4215731 50 Bacillus_phage(45.45%) transposase NA
DBSCAN-SWA_12 4250538 : 4268400 18 Streptococcus_phage(94.12%) integrase attL 4249344:4249359|attR 4269755:4269770
DBSCAN-SWA_13 4677943 : 4695395 15 Streptococcus_phage(91.67%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP034169.1|WP_137439994.1|3332439_3332973_-|hypothetical-protein 3332439_3332973_- 177 aa aa NA NA NA 3250503-3334562 yes
NZ_CP034169.1|WP_167494439.1|3333157_3333322_-|hypothetical-protein 3333157_3333322_- 54 aa aa NA NA NA 3250503-3334562 yes
2. NZ_CP034168
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034168_1 54851-54980 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP034168_1 1.2|54918|38|NZ_CP034168|CRISPRCasFinder 54918-54955 38 NZ_CP034168 Enterococcus avium strain 352 plasmid unnamed, complete sequence 54918-54955 0 1.0

1. spacer 1.2|54918|38|NZ_CP034168|CRISPRCasFinder matches to NZ_CP034168 (Enterococcus avium strain 352 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgggcatcaagggattgaggctcatttgaattttg	CRISPR spacer
ttttgggcatcaagggattgaggctcatttgaattttg	Protospacer
**************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2337 : 20036 14 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_2 71923 : 80361 8 Streptococcus_phage(100.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage