CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040098	Desulfoglaeba alkanexedens ALDC chromosome, complete genome	30 crisprs	cas3,DinG,cas3HD,csa3,WYL,cas8b5,cas7,cas5,cas6,cas1,cas2,csm6,csm3gr7,csx19,csx10gr5,cas10,csx1,PrimPol,csm2gr11,csm4gr5,csm5gr7,csx20	5	9	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040098_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_1

131108-131214

Orphan

Consensus_repeat	Method
AACCACGAAGGCACGAAGGGCACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_1

>merge|NZ_CP040098|1|131108-131214|CRISPRCasFinder
AACCACGAAGGCACGAAGGGCACGAGGAAAGAATTTATGACTAAGGTCTTTGTGTACTTCGTGTCTTTGTGGTTTTATATTTGAACCACGAAGGCACAAAGGGCACG

>NZ_CP040098|1|1|131108-131214|CRISPRCasFinder
AACCACGAAGGCACGAAGGGCACG	AGGAAAGAATTTATGACTAAGGTCTTTGTGTACTTCGTGTCTTTGTGGTTTTATATTTG
AACCACGAAGGCACAAAGGGCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425649.1\|131406_132027_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NZ_CP040098.1\|WP_137422819.1\|136975_137197_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP040098.1\|WP_137422816.1\|133713_134610_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|274398
NZ_CP040098.1\|WP_137422818.1\|136047_136476_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NZ_CP040098.1\|WP_137422813.1\|129789_130989_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP040098.1\|WP_137422808.1\|125073_125925_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197318
NZ_CP040098.1\|WP_137422817.1\|134857_135709_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197318
NZ_CP040098.1\|WP_137422820.1\|137278_137485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137422815.1\|133184_133808_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274396
NZ_CP040098.1\|WP_137422822.1\|137937_138231_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372110
NZ_CP040098.1\|WP_137422805.1\|121302_121734_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP040098.1\|WP_137422810.1\|127030_127336_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NZ_CP040098.1\|WP_137422812.1\|128968_129343_+\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|275083
NZ_CP040098.1\|WP_137422811.1\|127666_128797_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP040098.1\|WP_137422814.1\|132212_133169_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187581
NZ_CP040098.1\|WP_137422809.1\|126665_127061_+\|HEPN-domain-containing-protein	unknown	unknown	gnl\|CDD\|368314
NZ_CP040098.1\|WP_137422806.1\|121965_123108_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340833
NZ_CP040098.1\|WP_137422807.1\|123401_124826_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|274398
NZ_CP040098.1\|WP_170180117.1\|135705_135861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376775
NZ_CP040098.1\|WP_137425648.1\|125952_126201_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|376775

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425649.1\|131406_132027_+\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.16757e-22
NZ_CP040098.1\|WP_137422819.1\|136975_137197_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	0.00032444
NZ_CP040098.1\|WP_137422816.1\|133713_134610_+\|sugar-transferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	1.08136e-104
NZ_CP040098.1\|WP_137422818.1\|136047_136476_+\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	4.11342e-18
NZ_CP040098.1\|WP_137422813.1\|129789_130989_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.84805e-61
NZ_CP040098.1\|WP_137422808.1\|125073_125925_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	4.56192e-30
NZ_CP040098.1\|WP_137422817.1\|134857_135709_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	1.23401e-29
NZ_CP040098.1\|WP_137422815.1\|133184_133808_+\|hypothetical-protein	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	3.29745e-34
NZ_CP040098.1\|WP_137422822.1\|137937_138231_-\|hypothetical-protein	gnl\|CDD\|372110	pfam12441, CopG_antitoxin, CopG antitoxin of type II toxin-antitoxin system. CopG antitoxin is a member of a type II toxin-antitoxin system family found in bacteria and archaea. Most antitoxins encoded by the relBE and parDE loci belong to the MetJ/Arc/CopG family of dimeric proteins which bind DNA through N-terminal ribbon-helix-helix (RHH) motifs. The toxin for CopG proteins falls into the family BrnT_toxin, pfam04365.	0.000525568
NZ_CP040098.1\|WP_137422805.1\|121302_121734_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	3.74195e-47
NZ_CP040098.1\|WP_137422810.1\|127030_127336_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	8.69431e-14
NZ_CP040098.1\|WP_137422812.1\|128968_129343_+\|GxxExxY-protein	gnl\|CDD\|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	6.64623e-63
NZ_CP040098.1\|WP_137422811.1\|127666_128797_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.57835e-47
NZ_CP040098.1\|WP_137422814.1\|132212_133169_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187581	cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs. This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.13663e-143
NZ_CP040098.1\|WP_137422809.1\|126665_127061_+\|HEPN-domain-containing-protein	gnl\|CDD\|368314	pfam05168, HEPN, HEPN domain.	3.61107e-14
NZ_CP040098.1\|WP_137422806.1\|121965_123108_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340833	cd03804, GT4_WbaZ-like, mannosyltransferase WbaZ and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbaZ in Salmonella enterica has been shown to possess mannosyltransferase activity.	0
NZ_CP040098.1\|WP_137422807.1\|123401_124826_+\|sugar-transferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	6.72769e-142
NZ_CP040098.1\|WP_170180117.1\|135705_135861_+\|hypothetical-protein	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	1.4508e-13
NZ_CP040098.1\|WP_137425648.1\|125952_126201_+\|sugar-transferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	1.99231e-35

>NZ_CP040098.1|WP_137422813.1|129789_130989_+|glycosyltransferase-family-4-protein
MKILVNDHAGHPFQVQLSRALAGRGHEVRHSFTAQLQTPRGALERREADPTNLDFFPIVLSRPFSRYGLLERARQENELGRKLSAAARRFHPDVVVSANTPLGAQAMLAKECRKMGTGFVFWLQDLLGVGIRNNLEKKLPVPGKVVGRMYIGLEHRLLRQSEAVVAITEDFVPICRKAGVAPERIHVVENWAPLDEVGVVEKENPWSRAHGLDGTFNFIYSGTLGMKHNPRLLLDLARAFAGEKQVRVVVISEGLGAGFLKEQKEKPGLDNLVLMGFQPFEQVPLVQGAADVLVAILEPDAGVFAVPSKVLTYLCARRPLLLAVPPENLAARIVSGQGAGIVAAPGDGEAFIDGARRLWRDADLRQKMAANGRRYAEKTFDIERIADRFEGIIQGAKRK
>NZ_CP040098.1|WP_137422812.1|128968_129343_+|GxxExxY-protein
MKSVDRDQRTYAIIGAAMEVHRELGPGFLEAVYQAAMEMELTLRDIPFRSQPQVAVQYKGRDLDKVYQPDLICFGEIIVELKALSNLSGTEEAQMINYLKATGMKVGLLINFGGPSLKYRRFVY
>NZ_CP040098.1|WP_137422811.1|127666_128797_-|ATP-binding-protein
MYIPQRQLANLKEAVTPGKVVVIYGPRRVGKTTLLKKYLESIPEEVLFVNGDDIVIREYLESQSTEKLRDFVGNHAILIVDEAQYINQVGRNLKIIVDTIPSLRIIATGSSSFDLAKDIGEPLTGRKRVLKLLPLAQMEIAHMEKPHQTKANLDARLIYGSYPEVILLRGNTERQSYLRELVSSYLFKDILQLEGIRHADKLQRLVQLLAFQIGNEVSLAELGKQLGMSKNTVERYLDLLEKVFIIFRRSGFSRNLRKEIVKNQRYYFYDNGVRNALINNFNPLEIRDDTGALWENYVIVERLKKQEYLGQSANAYFWRTYDKKEIDLVEERHGTLSGFEIKWKRRTLHAPKDWVNAYPNATFEVIHRDNYLQFIQ
>NZ_CP040098.1|WP_137422810.1|127030_127336_+|nucleotidyltransferase-domain-containing-protein
MAQREAPEAVVNYATLLKRTIPHVKKVLLFGSYAKGTYKEDSDLDVAVIVETIADTFEMQVDLMKLRRKFDTRIEPHPIREADFHMANPIAREVMESGIEI
>NZ_CP040098.1|WP_137422809.1|126665_127061_+|HEPN-domain-containing-protein
MDKHEILQYWIESSDTDFSAMEHLFEKADYAWALFVGHLVLEKLIKAWYVHNVGINPPFIHDLVRLAEKADLALSEGQKDILDTVSTFNLRACYDDYKREFHRKCTRDFTKKWMDEIRGMRTWLREKLPKP
>NZ_CP040098.1|WP_137425648.1|125952_126201_+|sugar-transferase
MSLVGPRPPIPAEVAQYETWQRRRLSMKPGLTCIWQTTPRRNEVSFKEWMKMDLAYIDNWSLRLDFKILARTALVVLLGYGR
>NZ_CP040098.1|WP_137422808.1|125073_125925_+|endonuclease/exonuclease/phosphatase-family-protein
MIYRRYLLIVAIATCLAIGMAWAVHRPEAGGGGFSAMTFNVGDANPRPFPVARTAACILDEGRPDILFLQEVPGGRARAELLEALGYPHAAGAQAKSGKLAGLMVLSLYPIGETREIELPSDGRGSGALCAVLDIDGERVLACSVHLDEVDPKVRNAEGQVVFSARQALDSIYAELFSDTVRTAAVKVLGAAVAHAGMPVILAGDFNTVPVSRTIRHVSARYRDVLWPGVGWFQGTYHKIAFPLNPRIDYIFVSQRIAVDQARVLARSAGDHFPVRAALKKSA
>NZ_CP040098.1|WP_137422807.1|123401_124826_+|sugar-transferase
MLKGKRPSLRESSPFLMPFLRLLDAALVVLTLYSIVVLYVGQWGDQYTDLAVAAFGMTLLVFHYADLYRPWRGQSFISEFSVLCTAWVIEIGLVMFLLFVFKQGQVFSRAALLIWFGAVPMVLFVVHVSFRKMLRLLRSSGKNLRRAVIVGAGDLGFTLARHIEAAPWIGIRVIGFFDDRKTTADLAGTAQRDQTILGTVSDLKKYLEKNDVDFVYIALPMRAEGKIHDILQNCRTLGARLFLVPDLYAFRILNTRLERLGSMMLLDFNPESGRKRLFDVAFSLLVILCSLPLTLPIALLIKLNDRGPVFYGHRRITVSGREFKCLKFRTMCVDADRKLEEILERDPEARREWAQTFKLKNDPRVTWLGRFLRKTSLDELPQFINVLKGEMSVVGARPIVHKELCEYYRENGGIYCSIKPGITGPWQIGKRSDTEDYQERVELDTWYAVNRNFWLDLKIICLTVVKVLRGSGAY
>NZ_CP040098.1|WP_137422806.1|121965_123108_+|glycosyltransferase-family-4-protein
MRIALVHEWLTTYAGAERVLEQMIATFPEADFFALCDFLPQEERAFLQGRVPQTTLIQRLPLARSKYRAYLPLMPLAIEKFDLSGYDLVISSSHAVAKGVLTGPEQLHISYVHSPMRYAWDLQHQYLAEAGLGNGLRGWAARWILHRIRLWDVRTANGVDAFVANSNYIARRIWKVYRRKAQVIYPPVDVEHFSVRAAKEPFYLAASRMVPYKRMGLVVDAFAAMPGRRLVVAGDGPELRKIQAKARGAANIEVVGFLRTEVLRDYLTRAQALVFAAEEDFGILPVEAQACGTPVIAYGRGGCRETVVEGVTGLFFDAQTPDAVMDAVERFECCRNRFDPAVIRHHAESFSTDRFRNEFSTFVRETWERFRTERDRCFTG
>NZ_CP040098.1|WP_137422805.1|121302_121734_-|IS200/IS605-family-transposase
MDGTQSLSHTVWECKYHVVWIPKYRRKSLYEQLRKHLGQVFRELARQKESMIEEGHLMPDHVHMLISIPPKYGVAQVVGYIKGKSAIHIARTFLGRKKNFTGQNFWARGYFVSTVGRDEQMIREYIKKQETEDRRLDQLNMFE
>NZ_CP040098.1|WP_137425649.1|131406_132027_+|NYN-domain-containing-protein
MRTIGYVDGFNLYYRALKGTPYKWLDLNKMLSRILKKENRLVGIRYFTAMVTGRIDPDQPRRQRTYLNALETLPGLTVHLGTFLAKSTKRPLSGSNPRQFVSIDSFEEKGSDVNLASYLVHDGWRDMYDVAVVVTSDTDLITPIELVIRDLKKPVGIISPSIPCPKGLAQVASFVRHIRKADLKNCQFPASFTNAQGKRITQPRGW
>NZ_CP040098.1|WP_137422814.1|132212_133169_+|NAD-dependent-epimerase/dehydratase-family-protein
MKTALVCGAGGFIGSHMVRRLKDEGYWVRGVDLKFPEFWETVADDFVIGDLREQDLCRRIVDRRFDEVYQFAADMGGAGYVFTGVHDADIMHNSAQINLNMLDVCHKRNVKRIFYSSSACIYPEYNQLDPDNPNCAEDSAYPAQPDSEYGWEKLFSERIYLAYQRNKGMEVRIARFHNMFGPYGSWKDGKEKAPAAMWRKVAMAPDGGEIEIWGDGKQTRSFLYIDECLDGVLRLTRSDWSGPVNIGSDEMVTIDQLADMAMEIAGKKLAKKHIDGPLGVRGRNSDNRLIQEKLGWRPSRPLREGLEKTYRWIAAQVG
>NZ_CP040098.1|WP_137422815.1|133184_133808_+|hypothetical-protein
MLKGKRPSLRESSPFLMPFLRLLDAGLVVLTLYSIVVLYVGQWGDQYTDLAVAAFGMTLLVFHYADLYRPWRGQSFISEFSVLCTAWVIEVGLVMFLLFVFKQGQVFSRAALLSWFGAVPMVLFVVHVSFRKMLRLLRSSGKNLRRAVIVGAGDLGFTLARHIEAAPWIGIRVIGFFDDRKTTADLAGTAQRDQNHPGNRFRAQKIS
>NZ_CP040098.1|WP_137422816.1|133713_134610_+|sugar-transferase
MTTGKPPRTWPARRSGTKTILGTVSELKKYLEKNDVDFVYIALPMRAEGKIHDILQNCRTLGARLFLVPDLYAFRILNTRLERLGSMMLLDFNPESGRKRLFDVAFSLLVILCSLPLTLPIALLIKLNDGGPVFYGHRRITVSGREFNCLKFRTMCVDADRKLAEILERDPAARREWAQTFKLKNDPRVTWLGRFLRKTSLDELPQFINVLRGEMSVVGARPIVHKELCEYYRENGGIYCSIKPGITGPWQIGKRSDTEDYQERVELDTWYAVNRNFWLDLKIICLTVVKVLRGSGAY
>NZ_CP040098.1|WP_137422817.1|134857_135709_+|endonuclease/exonuclease/phosphatase-family-protein
MIYRRYLLIVAIATCLAIGMAWAVHRPEAGGGGFSAMTFNVGDANPRPFPVAQTAACILEDGRPDILFLQEVPGGRARAELLEALGYPHAAGAQARSGKLAGLMVLSVYPIGETREIELPSDGRGSGALCAVLDIDGERVLACSVHLDEVDPKVRNAEGQVVFSARQALDSIYAELFTDTVRTDAVKALGAAVADAGMPVILAGDFNTVPVSRTIRHVTARYRDVLWPGVDWFQGTYHKIAFPLNPRIDYIFVSPRIAVDQARVPPRSAGDHFPVRAALKKGA
>NZ_CP040098.1|WP_170180117.1|135705_135861_+|hypothetical-protein
MTRTPCAARRNEVSFKEWMKMDLAYIDNWSLGLDFKILARTGLVVVLGYGR
>NZ_CP040098.1|WP_137422818.1|136047_136476_+|four-helix-bundle-protein
MQDEVLERNKNLNRGFRKLEVWREAIQLYGFEKKVLDSLKKISFKIKDQVLDSVFSISSNIAEGYCRRSIKEYIQFINVALGSCGENYSQFYALLESGEIGRAVFDEFDERHHRIENKLMNLAKALSKKMKTGQDWDSDYKV
>NZ_CP040098.1|WP_137422819.1|136975_137197_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKYTLPVVIVRLENGDYLARCEDVRATAIGDTPSEAVANLRESIEQIEKKRELVFSGSHTGPIRDFSRQKTEL
>NZ_CP040098.1|WP_137422820.1|137278_137485_+|hypothetical-protein
MNTGLLVLYTDNDGSLKGLPKFPPNKKVEVYFRITGPIEAQRPPRRLPNPEIAGKILIKGDVFDTCCR
>NZ_CP040098.1|WP_137422822.1|137937_138231_-|hypothetical-protein
MKTEQTTRKTWAEYYDQENILDEITEEPVTFSLQDDIRQDIITGKRKRKLKNISIKLDPLHVQAIKKLATMKAMPYQTLVRHWLAEDIKKELDAVRK

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Crispr_ID: NZ_CP040098_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_2

160523-160628

Orphan

Consensus_repeat	Method
GATCGTAGGGGCGGGTTTGAAACCCGCCCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_2

>merge|NZ_CP040098|2|160523-160628|CRISPRCasFinder
GATCGTAGGGGCGGGTTTGAAACCCGCCCCTACCTGGCCGCCTTGCGGACCTTCGTGTGTGGAATGTTGGGTGGATCGTAGGGGCGGGTTTGAAACCCGCCCCTAC

>NZ_CP040098|2|2|160523-160628|CRISPRCasFinder
GATCGTAGGGGCGGGTTTGAAACCCGCCCCTAC	CTGGCCGCCTTGCGGACCTTCGTGTGTGGAATGTTGGGTG
GATCGTAGGGGCGGGTTTGAAACCCGCCCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137422850.1\|169028_171107_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NZ_CP040098.1\|WP_170180118.1\|165894_166326_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376668
NZ_CP040098.1\|WP_137422837.1\|154795_157090_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|274241
NZ_CP040098.1\|WP_137422833.1\|152257_152497_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NZ_CP040098.1\|WP_137422836.1\|154467_154782_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|376861
NZ_CP040098.1\|WP_137422835.1\|153235_154303_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_CP040098.1\|WP_137422845.1\|165049_165856_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234578
NZ_CP040098.1\|WP_137422832.1\|149196_150399_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379646
NZ_CP040098.1\|WP_137422842.1\|161623_162205_+\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP040098.1\|WP_137422839.1\|158039_159293_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP040098.1\|WP_137422844.1\|163341_165045_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP040098.1\|WP_137422848.1\|167498_168044_-\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NZ_CP040098.1\|WP_137422838.1\|157135_157822_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP040098.1\|WP_137422847.1\|166349_166775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137422840.1\|159898_160444_+\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376827
NZ_CP040098.1\|WP_137422841.1\|160641_161421_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|293830
NZ_CP040098.1\|WP_137422849.1\|168040_168475_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137422843.1\|162201_163128_+\|EF-P-lysine-aminoacylase-GenX	unknown	unknown	gnl\|CDD\|273090
NZ_CP040098.1\|WP_137425652.1\|150557_152090_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959
NZ_CP040098.1\|WP_137422834.1\|152496_152928_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350221

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137422850.1\|169028_171107_-\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NZ_CP040098.1\|WP_170180118.1\|165894_166326_+\|hypothetical-protein	gnl\|CDD\|376668	pfam01927, Mut7-C, Mut7-C RNAse domain. RNAse domain of the PIN fold with an inserted Zinc Ribbon at the C-terminus.	1.85909e-42
NZ_CP040098.1\|WP_137422837.1\|154795_157090_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|274241	TIGR02639, ATP-dependent_Clp_protease_subunit, ATP-dependent Clp protease ATP-binding subunit clpA. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP040098.1\|WP_137422833.1\|152257_152497_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	9.35149e-11
NZ_CP040098.1\|WP_137422836.1\|154467_154782_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|376861	pfam02617, ClpS, ATP-dependent Clp protease adaptor protein ClpS. In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins.	2.27797e-42
NZ_CP040098.1\|WP_137422835.1\|153235_154303_-\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP040098.1\|WP_137422845.1\|165049_165856_+\|hypothetical-protein	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	3.86485e-05
NZ_CP040098.1\|WP_137422832.1\|149196_150399_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|379646	pfam14559, TPR_19, Tetratricopeptide repeat.	0.00155282
NZ_CP040098.1\|WP_137422842.1\|161623_162205_+\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	4.52548e-106
NZ_CP040098.1\|WP_137422839.1\|158039_159293_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP040098.1\|WP_137422844.1\|163341_165045_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	6.62647e-47
NZ_CP040098.1\|WP_137422848.1\|167498_168044_-\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	5.73031e-74
NZ_CP040098.1\|WP_137422838.1\|157135_157822_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	9.72964e-136
NZ_CP040098.1\|WP_137422840.1\|159898_160444_+\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376827	pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyze the adenosylation reaction: ATP + cob(I)alamin + H2O <=> phosphate + diphosphate + adenosylcobalamin.	3.06456e-99
NZ_CP040098.1\|WP_137422841.1\|160641_161421_-\|ribonuclease-Z	gnl\|CDD\|293830	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. It includes the C-terminus of human ELAC2 and Escherichia coli zinc phosphodiesterase (ZiPD, also known as ecoZ, tRNase Z, or RNase BN) is a 3' tRNA-processing endonuclease, encoded by the elaC gene. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.13943e-42
NZ_CP040098.1\|WP_137422843.1\|162201_163128_+\|EF-P-lysine-aminoacylase-GenX	gnl\|CDD\|273090	TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. [Unknown function, General].	7.83132e-122
NZ_CP040098.1\|WP_137425652.1\|150557_152090_+\|DnaJ-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	7.48448e-29
NZ_CP040098.1\|WP_137422834.1\|152496_152928_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350221	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Pyrobaculum aerophilum proteins, Pae0151 and Pae2754, and homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.66953e-38

>NZ_CP040098.1|WP_137422840.1|159898_160444_+|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MSDATEACMSKGLLLVFTGDGKGKTTAALGTALRAAGHGMNVLILQFIKGSWHYGELDAVKRLETVTLRTLGSGFTWQKENLDEDRRLAREGWRQAREAVLSGRYDLVILDELNIALSYGLLETEPVVQSLQRRPEHVHVIVTGRNAPEALVAAADTVTEMTAVKHHFRDQKIPAQKGIEF
>NZ_CP040098.1|WP_137422839.1|158039_159293_+|aspartate-kinase
MALVVQKYGGTSVATVERIRSVAHRVIDRKKQGDDLVVVLSARAGDTDNLLKLAREMSPRPDPRELDVLLATGEQITIALFSMAVKDLGYEAISMTGYQAGIITDHTHGGARINWIETLPIMEKLREGKIVVVAGFQGYDDEGNITTLGRGGSDTTAVALAAALKADVCEIYTDVEGVFTTDPNVYSKARKLKRISYEEMLEMASMGAKVLHLRSVEFAMKYNVPILVGSSFTDAPGTLVTREEPEMERVVVSGITYNKNEARITVADVPDVPGMAYRLFKPIADHGINVDMIIQGQGGVPGRANISFTVPKPDYEEAIRLTETIAREMGAGPVHGNPHIAKISIIGVGMRSHTGVAGRIFETLARENINIMMISTSEIKLSCVIDEKYTELAVRVLHDAFELHKDPQGHMAVKEES
>NZ_CP040098.1|WP_137422838.1|157135_157822_+|leucyl/phenylalanyl-tRNA--protein-transferase
MPVYRMSESLDFPSPHDAEPDGLLAVGGDLSPPRLLLAYCHGIFPWYSQATPILWWSPDPRLVLFPEELKIAKSLQRVVRKGRFTVTFDRDFGGVIRACAAVRRRQGEGTWLVPEMILAYSRLHELGYAHSVESWFEGRLVGGLYGVALGRVFFGESMFTTVPDASKVAFVHLVDRLTDWGFEMIDCQVTTHHLQRFGAREISRSDFLSRLRRAVNVPPPRGAWGPAP
>NZ_CP040098.1|WP_137422837.1|154795_157090_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MISRELEMVFSAAVREAKLRRHEFFTLEHILYALLHDVTGREILYHCGALIGELKDKLERFLNERLEVLPEKVEQDPIQTLAVQRVLQRAILHVQSAEKKQVDAGDVLAAMFYEDDSHAVHFLKSQGVTRLDVLEYITHRVSKAEETSLREAPRSGASLAPRQPQPGQKSSALDLYTVNLNERAAQGLIDPLIGRESEIMRTLQILGRRTKNNPIFVGDPGVGKTAIAEGLALKIHQGQVPESFRGVEIFALDMGALLAGTKFRGDFEARLKAVINEMREKPGAVLFIDEIHTVVGAGATSGGSMDASNILKPVLASGALRCIGSTTYEEYKNHFEKDRALSRRFQKVEISEPTVEETYQILKGLKSYYEEHHGVRYTVPALKAAAELSARHINDRYLPDKAIDVIDEAGASLLLKEDRRVRHVVSPRDIEAVVARMAKIPPRTVSSSDQLRLQALEDELKSVVFGQDAAIKSLVTAIKRSRAGLRVPDRPIGSFLLIGPTGVGKTELAKQLAQTLGVHFLRFDMSEYMEKHTVARLIGAPPGYIGFDQGGLLTDAIRKYPYSVLLMDEIEKAHPDLFSILLQVMDYATLTDNNGKKADFRNVILLMTSNAGAREMSLSSIGFGAGQAQDDRTAKGLKAVEKLFSPEFRNRLDGIIAFSGLTRDIMERVVDKFLRELEQQLSEQKITLELTPAARRWLAENGYDPAFGARPLARLVQREIKDPLADEILFGRLKTGGHVVIDRPAEGEGDAPAIQTENFRFDFR
>NZ_CP040098.1|WP_137422836.1|154467_154782_+|ATP-dependent-Clp-protease-adapter-ClpS
MSEHDPEFREEFEEGIQEDLDEPPLFKVLLHNDDYTTMEFVVEILEKVFYKTPSEATQIMLHVHRNGVGLCGVYPGEVAETKVEVVHHLARKNGFPLKCSMEKA
>NZ_CP040098.1|WP_137422835.1|153235_154303_-|chorismate-synthase
MPGNTFGKLFRVTTWGESHGPAVGAVIDGCPPGISLAPEDVQHDLDRRRPGGRFASPRKEPDRVEILSGVFEGRTTGTPISLMVRNHDVRSRDYNELAKTYRPGHADRTFEQKYGFRDWRGGGRSSARETVGRVAAGAVARRFLEGEGVRVRGYTLALGSVACDRGAMDLDRADENPFFCPDPKAAQAMEELVAQVRSEGDSLGGVVEVVAWGLPPGLGEPVFDKLDARLGAALFSIGAVKGVEIGSGFQAARKRGSENNDPVTREGYASNHAGGVLGGLSSGMELVVRVAVKPIPSISKEQATVDRDGTPRTIRIGGRHDVSAVPRIVPVCEAMVLLTLADFMLFPYPYRLKHR
>NZ_CP040098.1|WP_137422834.1|152496_152928_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MPARFVVDNSVVMAWCFEDEGDGYAEAVLESLDSAEAFVPAIWPLEVGNVLLAAERRKRLTQAAVVRFLALLGGLPVTVEQETPERMLKEIVSLARQQGLSTYDASYLDLAMRFDLPIATLGASLVKAAEKCKVPVFDPARAR
>NZ_CP040098.1|WP_137422833.1|152257_152497_+|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MKTVGAYEAKTHLTQLLECVAKGEKITITKHGVPVAILQPADSSKRMPVREVIDQLKRFRSGRRLDGLSIRDMIEEGRR
>NZ_CP040098.1|WP_137425652.1|150557_152090_+|DnaJ-domain-containing-protein
MDAGIHLASLCRRHGVPPSYFEERVRVLVHVLNLAPQPDDLYGILGLKSDASQEEVKRAFRRLSRQWHPDVNPGRPEAAESFMKIHQAYQVLGDPDLRRHYDRQSRVPVPKDPGRGGSAEAPNRRSRRWSRHFGYPVAALVALLLAVTLMGDFQGFLTRRYYAGKSTSRKPATEPAAAPAAAPTAAPPGVAEQAAPAPRKGNPPPAVTPSPQGLSVLLHPLETASEDLGRDLNVRVPADTRPAEADTRPAEKPSPEEGSKPARIANASFNEPAGRTPALGGPPAPPNAAPPPEPNREPETAPGSAPAGPPHSRLKEPEKPERPRRVVEAPRRVVEAPKREVESPAPEPPSRSGGTVSAEAEPAASPKAAAGRSDAAPPPLISVETTEAHISSFLDRYCRTFSRMDLEGFLNLFTPDARENGKLIGSLRSQYERNFARTEQLAYRIRLERWSYSRDTIRVTGRFDLVALFHDHSGVHSDGRVILSLVPHREGFRVASLEYTFLHSEKIKRE
>NZ_CP040098.1|WP_137422832.1|149196_150399_+|tetratricopeptide-repeat-protein
MKPPLRKRIAWSVLLAGLGVVLGGYGLLRYQVGTRNIDFALNHASARLFPQTWLWEGHRYFYDRLDPEGAADAYRQAVARHNVYIEAWFSLAKAEIALGHREAASKMLQVLSSSLAEVSTWKWQECLVAFDLKEDQTLESAFNFILERMPRKVRDACFLARQYWGSWAAVAHHVRPANEPVLLQELIAGRELDAARELWDRMDRSGRPPERALTFRLCHALLHNQQIPDAKAVWNRETGIRRPRVHNGSFEEEPLNLAFGWRLAKHPDVAVERTPTESFDGRFSIHVRFLGTANVHFHHVTQILPVDPGAAYRLRFARKSRGLTTDQGVSVEVFGYACKGLYRSSDPVLGTQPWTVESLEFQVPEGCEAVAVRLRRRESLKFDSKILGDYWLDSVSLEPT
>NZ_CP040098.1|WP_137422841.1|160641_161421_-|ribonuclease-Z
MRITFLGVGEACDSAHPNTSVLVETVLSGRERSVLCDCGFTVPHAYWKRVADPEALDAVWISHFHGDHFMGLPLLLLRFWEMKRRRPLKIVGQSGIRDIAEQALDFAYPGFGRKLTYALETVEMEPGSDERISGFDWRAAESEHGRRNLSLRLEAGGWTVFYSGDGRPTAETLRLAEGCDLMIHEAFHVREPAEGHGTVAGSLDAARSARARRLAVVHVQRDERREKTAEIHGMLKSAEGLWAFMPEGGETLILSSRAG
>NZ_CP040098.1|WP_137422842.1|161623_162205_+|elongation-factor-P
MGAVLTSSDLRKGLKLEIDGEPYVIVDFEFSKPGKGQALYRCRLRNMVTGVQFDRTYRSGDKHTAADLDERKMEYLYKEGDHYCFMNTESFEQIELNEAAVGDAKNFLTENLVVDMLFFKDTPIGITLPNFVELPVVKADPGVKGDTASGATKPVTLSTGYEVQVPLFIEEGDILKLDTRTGAYVERIKSSGS
>NZ_CP040098.1|WP_137422843.1|162201_163128_+|EF-P-lysine-aminoacylase-GenX
MSELERLAAGRPYLEQRCRIVYAMRRFFLESGFLEVQTPLRTAAPAPERHIEPFASEDRFLITSPELHMKRMLAAGYERIFQIGPVFRKGERGRRHHPEFTMIEWYRRDADYRDLQQDCRALITWICESTGRRSGFFYGETRLAVSGDWPVHTVRSAFLQWAGWDPVAAFDPERFDRDLVETVEPHLGFPLPAFLTDYPAEQAALARLKSNDPRIAERFELYWAGVELANGFSELTDPVEQRKRFLQVVEERERARAARPPMPEAFLESLERMPPRCAGIALGVDRLVMVLCGVRSLDQVVAFPPEEA
>NZ_CP040098.1|WP_137422844.1|163341_165045_+|tetratricopeptide-repeat-protein
MAQPKRVLLLLCLVCAAIGGCAPLQRQPPPAPDRPVVLDRARSEAYASYLLAQYYLSVNETEKAVAAYEAALQHDPESPTLLTELSTLYIRLGDIEKALEAAVKATEVDPTHEEAFLLLGRLYAGLGQNRKAIEAYRHVIEMNPANADVYLLLGTLYAQEGRFNEALKTLDRLRLLLPDNPLAAYYRARIFLDMKFYDQAEAAYQEVLELSPTFENGLLDLAYIYEVTDRFREAEETYLRILSFKPTSVEARVQLGNLYMRQRQYDKALEQFDILSRRNASDLESRLKIGIIHLQQGELERAVEDFNALLRDRPQYDQALYYLGTTYEEQGNLQEALVNFRAIAKDSPLWPNAQIRLAVLFSKMEDHRSGIECLRQAIAERPEEQDFYLYLAFLLEETKDYAGALDVLNQGLERSPEDVELLFRKAVVLDRLDRKDEAIQVMQKILSLDPENAGALNYIGYTYADRGIRLQEAKTLIERALAREPEDGYIMDSLAWVYFKMGEYKKALEIMLEALRRVPDDPVMLEHLGDIYRALGRPQDAREAYERAIENGHQEPEAVRKKMEGSV
>NZ_CP040098.1|WP_137422845.1|165049_165856_+|hypothetical-protein
MRFFRPTRRVITALAVVLLAAAACRPYRPPVPVPEPRAVSPEAWIQAFERRTRGLDRYQAIYRVRLQPEAERTVSLQVVVSGQLPERFRIEARNTFGQTAGVVAVGPRGSGVWLSSENTLYLARDGTTILKGLLGISMDPALLGHLLAGCLPLEDLKRARFRETVPNRGRLEVKDRDGAVRIAWDVGLNPPLIYGASVPEPPQALVAHFDPAVSPDPEQVPENLRIMSSRWVLEAKRVQFQKVESFPPGHFAPPSPKGARRVLLDERP
>NZ_CP040098.1|WP_170180118.1|165894_166326_+|hypothetical-protein
MLGNVAKWLRVLGFDTASASIRTLDQLERFRKEGRTAITRATRWRSRAGVVFLEADEPDAQLREVVSRLAIRLDEVDLLSRCLECNEPLEPVEQAEVLGRVPEFVARTETSFSRCPKCGRILWPGSHVVRMQARLRDMLGWSL
>NZ_CP040098.1|WP_137422847.1|166349_166775_+|hypothetical-protein
MPGVVDSIVNLGKKCVYCAMECAAIVYHWNMRMLRTRLKKLSQSSVHKDMKKAYGDLGAEVFALYKQGVTDIVNQPAVTNQLRRVERAEAKVMEAENAAQTIREDYERKKQAVKDAYRAKRAAVGGRRGPSSGGQGASEDE
>NZ_CP040098.1|WP_137422848.1|167498_168044_-|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MRKDVTLQTRANAVDHDRTAAVVTVSDRGFRGEREDRSGDALEARLVEAGYQVVERVLVPDEAPAVSHALRTLSDERSVALVLTTGGTGVAPRDVTPEGTAAVLEKTVPGMAEAMRAASLAKTPHAMISRALAGIRRRTLIVNLPGSPKGAVENLEVILPALPHALAKIQGDPTECGAPID
>NZ_CP040098.1|WP_137422849.1|168040_168475_-|hypothetical-protein
MPEDDKPERRESAAQRIKELTIPQKVRLAMTGGKEARTLLILDSNRAVQLAILDNPKLTQSEVVGIAQSRSVSDDVLRKIAANREWIKLYPVRLALVKNPKTPIGVSVKFVGTLHPTDLKVIARSKSVASVVTQAANRQLIRKK
>NZ_CP040098.1|WP_137422850.1|169028_171107_-|elongation-factor-G
MKDSVAKVRTFAIISHGGAGKTSLAEAMLFDAGENTRLGKVDDNTSIMDFEPEEISRKITISTAFNTLTWQKHLLTLIDTPGDFNFIAETKSSLQGADAALVVVDAIDGVRVQTEKVWKFADEIGLPKMFFVSKMDRERADFPGTVEGIRKVFGSRCVPLLVPIGSAEDFRGVADILTGKAYIYSKGDSGTFDVEDIPADVRDMADRYREELIENIAEGTDELLERYLEGEELSLDDLKKGLRSAVISGKLVPIACGSGTGNIGIQPLLDAIVTCFPSPLDREPRKGKSPSGDKEEIRPPDPDAPFSGQVIKTISDPYAGRLSVMRVFSGVITADMTVYNATKEVKERFGNLLRIKGKSQEPVERAVPGEVVAVAKLKETTTGDTLCDEKNPIVYPRVELPGAIYSLAIEPKSRGDEEKIFASLGRLMEEDLALKLERNEETKEMILSGMGETHVELTVEKLKRKFGVEVNLKTPKVPYKETIKGKARVQGRYKKQTGGRGQYGDCWIEMEPLPRGEGFQFVDKIVGGVIPKQYIPAVEKGIVEAAREGVLAGYPVIDFKVDLVDGSYHPVDSSEMAFKIAGSMAFKKAVAEAKPTLLEPIVQMEITVPDDCMGDVIGDLNARRGKVQGMDTEGNKQIVRAQVPLAEVLKYAPDLRSMTAGRGMFTVKFSHYEEVPAHLQEKIIEASKKEQE

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Crispr_ID: NZ_CP040098_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_3

449735-449840

Orphan

Consensus_repeat	Method
GGCGATCCGCATCGCGGCCAAGGCCGCTCCTACAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_3

>merge|NZ_CP040098|3|449735-449840|CRISPRCasFinder
GGCGATCCGCATCGCGGCCAAGGCCGCTCCTACAGGACCAAAGCTACGACAAGATTATTGGGCAGTTAGGGCGATCCGCATCGCGGCCAAGGCCGCTCCTACAGGA

>NZ_CP040098|3|3|449735-449840|CRISPRCasFinder
GGCGATCCGCATCGCGGCCAAGGCCGCTCCTACAGGA	CCAAAGCTACGACAAGATTATTGGGCAGTTAG
GGCGATCCGCATCGCGGCCAAGGCCGCTCCTACAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423090.1\|444612_445167_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP040098.1\|WP_137423093.1\|447209_448295_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP040098.1\|WP_137423087.1\|441648_441939_-\|Dabb-family-protein	unknown	unknown	gnl\|CDD\|214884
NZ_CP040098.1\|WP_137425669.1\|456829_457420_+\|GAF-and-ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|214500
NZ_CP040098.1\|WP_137423094.1\|449152_449578_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423098.1\|454043_455099_-\|type-IV-pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|378558
NZ_CP040098.1\|WP_137423086.1\|441133_441607_-\|DUF1285-domain-containing-protein	unknown	unknown	gnl\|CDD\|377736
NZ_CP040098.1\|WP_137425668.1\|449921_450386_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NZ_CP040098.1\|WP_137423089.1\|444215_444566_+\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NZ_CP040098.1\|WP_170180136.1\|452673_453291_-\|type-4a-pilus-biogenesis-protein-PilO	unknown	unknown	gnl\|CDD\|309474
NZ_CP040098.1\|WP_137423091.1\|445274_446156_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP040098.1\|WP_137423100.1\|457563_458742_-\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP040098.1\|WP_137423095.1\|450642_452601_-\|type-IV-pilus-secretin-PilQ	unknown	unknown	gnl\|CDD\|274173
NZ_CP040098.1\|WP_137423088.1\|442088_444011_-\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|225815
NZ_CP040098.1\|WP_137423085.1\|439941_441117_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP040098.1\|WP_137423097.1\|453393_454047_-\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|377469
NZ_CP040098.1\|WP_137423092.1\|446218_447250_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NZ_CP040098.1\|WP_137423102.1\|459220_459925_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377035
NZ_CP040098.1\|WP_137423101.1\|458791_459187_-\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|182303
NZ_CP040098.1\|WP_137423099.1\|455236_455902_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137423090.1\|444612_445167_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.10461e-108
NZ_CP040098.1\|WP_137423093.1\|447209_448295_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP040098.1\|WP_137423087.1\|441648_441939_-\|Dabb-family-protein	gnl\|CDD\|214884	smart00886, Dabb, Stress responsive A/B Barrel Domain. The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	3.89525e-28
NZ_CP040098.1\|WP_137425669.1\|456829_457420_+\|GAF-and-ANTAR-domain-containing-protein	gnl\|CDD\|214500	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.	1.87196e-20
NZ_CP040098.1\|WP_137423100.1\|457563_458742_-\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	0
NZ_CP040098.1\|WP_137423098.1\|454043_455099_-\|type-IV-pilus-assembly-protein-PilM	gnl\|CDD\|378558	pfam11104, PilM_2, Type IV pilus assembly protein PilM;. The type IV pilus assembly protein PilM is required for competency and pilus biogenesis. It binds to PilN and ATP.	7.53556e-85
NZ_CP040098.1\|WP_137423086.1\|441133_441607_-\|DUF1285-domain-containing-protein	gnl\|CDD\|377736	pfam06938, DUF1285, Protein of unknown function (DUF1285). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain- interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.	3.66455e-08
NZ_CP040098.1\|WP_137425668.1\|449921_450386_-\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	2.44621e-16
NZ_CP040098.1\|WP_137423089.1\|444215_444566_+\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	1.27691e-25
NZ_CP040098.1\|WP_170180136.1\|452673_453291_-\|type-4a-pilus-biogenesis-protein-PilO	gnl\|CDD\|309474	pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are involved in the assembly of pilin. However, the precise function of this family of proteins is not known.	1.51247e-35
NZ_CP040098.1\|WP_137423091.1\|445274_446156_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.02335e-167
NZ_CP040098.1\|WP_137423095.1\|450642_452601_-\|type-IV-pilus-secretin-PilQ	gnl\|CDD\|274173	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures].	8.19495e-131
NZ_CP040098.1\|WP_137423088.1\|442088_444011_-\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|225815	COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis].	1.92339e-108
NZ_CP040098.1\|WP_137423085.1\|439941_441117_+\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	5.44788e-154
NZ_CP040098.1\|WP_137423097.1\|453393_454047_-\|PilN-domain-containing-protein	gnl\|CDD\|377469	pfam05137, PilN, Fimbrial assembly protein (PilN).	1.24514e-17
NZ_CP040098.1\|WP_137423092.1\|446218_447250_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	1.60834e-111
NZ_CP040098.1\|WP_137423102.1\|459220_459925_+\|hypothetical-protein	gnl\|CDD\|377035	pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase NADP binding domain. This family contains the NADP binding domain of saccharopine dehydrogenase. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.	0.00425115
NZ_CP040098.1\|WP_137423101.1\|458791_459187_-\|DUF1992-domain-containing-protein	gnl\|CDD\|182303	PRK10203, PRK10203, hypothetical protein; Provisional.	6.14837e-33
NZ_CP040098.1\|WP_137423099.1\|455236_455902_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	3.53412e-52

>NZ_CP040098.1|WP_137423094.1|449152_449578_+|hypothetical-protein
MERRNRLLGSVALANGLVAHFYDRSRKVAGDRWQVELAIEIPIDAHGYEPPSEESSKEYRAFLEESGGRLVFRQSKVRNFVAEDQVEPLLETLKREFLDSNRAYLNHPRFAALFLKQEFTKWKERKDLEARRAALHRGAEP
>NZ_CP040098.1|WP_137423093.1|447209_448295_-|dTDP-glucose-4,6-dehydratase
MKRTILVTGGCGFIGSNFVRAALERLAASRIINLDKLTYAGNLENVSDLNGHPRYRFVRGDICDAETVGRLFGDEGVDTVIHFAAESHVDRSIEGPEAFIRTNIFGTYVLLEAARKSWIEAARKRRPENPVFLHVSTDEVYGSLGPDGFFTENTPYDPRSPYSASKAASDHLVSAYHHTYGLPTVITNCSNNYGPYQFPEKLIPLMIINALEGRDLPVYGDGNNIRDWIHVQDHCEALLAVLAKGRPGETYNIGGNNERRNIEIVEAICDILDEKLGPLDAVRPRRSLIRFVKDRPGHDRRYAIDAGKVMRELGWAPRFSFEDGLRSTVDWYLQNRAWLQRIVDGTYRDDYDRMYGWRFEG
>NZ_CP040098.1|WP_137423092.1|446218_447250_-|dTDP-4-dehydrorhamnose-reductase
MTTTGCTAGVSKAEGSGRFGTLSEAEKRGVDSRRRIAVLGAGGMLGKMVVQKAPPAFDVLALTKAQADISDPSKTAEVLDQLSPGVVINCGAVTDVDGCERTPQTAESVNGMAPGNLAAWCLAAGALLVHVSTDFVFDGNKKTPYVESDPPNPLSAYGRSKLLGEERVAASGIKRYFIVRTSWLYGPWGRNFVDTMVRLLLDREVLSVVSDQVGSPTYTEDLAEAIFDLVRLDGDARRLGSRGGEGKDGAAVHGIYHFADRGACSRYELAERIAHELVRLGLPVKARKIRPIRTEDYPLPARRPAYSVLSTDKFRTVTGKSVPDWREALARYLESRFGGGASG
>NZ_CP040098.1|WP_137423091.1|445274_446156_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MNHGVRKGILLAGGAGTRLHPLTLVGSKQLLPVYDKPMIYYPLSVLMMAGIRDVLVISTPADTPRFENLLGDGSRWGIRLSYRVQPEPGGIAQAFLIGEAFIDGEAVCLILGDNIFYGRMGLNRICREFSGGALIFGYPVNDPERYGVVEFDETGCVLSIEEKPARPRSRYAVPGLYVYDDDVVAITRAMKPSARGELEITDVNLEYLRRGRLRVERLGRGIAWLDTGTHESLLEASHFIGTLEMRQGLKIACLEELAFNLGYIDAEQFERIVAETPKSTYRDYLVRILEEKG
>NZ_CP040098.1|WP_137423090.1|444612_445167_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MKIVSTPIPDVLIVEPRVFSDQRGFFFESYNEKEWRRLTGLNTHFVQDNHSRSVKGVLRGLHYQIRRPQGKLVRVVVGEVFDVAVDLRKQSPTFGRWTGTVLSEENRRQLWIPEGFAHGFLVLSEVAEFLYKATDYYAPQWERCVRWDDPDLGIAWPLSGPPVLSEKDRKAPALRDADAFTDIS
>NZ_CP040098.1|WP_137423089.1|444215_444566_+|helix-hairpin-helix-domain-containing-protein
MKSSAKRMLFPVVMIVSLFAFTFAVVTVPQPASAAAEGVTAPQPESAAAEGKSLININSASAEELQELPGIGPAIAAKIVEYRTANGPFQSLDDLKNVQGIGDKKFDAIKAMITIE
>NZ_CP040098.1|WP_137423088.1|442088_444011_-|selenocysteine-specific-translation-elongation-factor
MKQVVLGTAGHIDHGKTSLIRALTGIDTDRLKEEKLRGITIELGFAHLELPNGDILGIVDVPGHERFVKHMVAGATGIDVVALVIAADEGVMPQTREHLEICQLLRVKKGLVVLTKIDLVDDSEWVEMVQEDIRDFLQGTFLEGSPIVQVSATTGEGIDALRQTLFDLVAGVEPRSTAGPFRLPIDRVFSMRGFGTVVTGTSISGRLKVGDPVMVYPSGRKTKVRGLQVHNREVQEVLPGQRTAINLQGVDREAIERGDVAATPDSLLSSHMLDVDLEILSSAPRPVKNRQKFRFHTGTTENLATLVLLDRQELVPGERAFAQVRLDRPLAVLRGDRFVLRSYSPVMTVGGGSILHPVPKKHKGREKRQAAQALQVLQSGEDRDIVLWHVRDAAWAGVSENELAIRANISGKAFQNILQQLVSQKQVLLYDKDNRRFLDPGALSEIQAAVLELLAAYHRQFPLKAGMAKEELAAQLPRPIDSRVYNYALRQTADEGRIVLEKEWVRLSTHKVDLTEEEQVVRRKIEAIYAEAGLQPPFFKEIAESLPGNSRQHADVLEWMLSQDILVKVKEDLYFHTAAIDDLRNRLIAFLKEHGEITTPQFKEMTQASRKYTIPLSEYFDAQRVTIRVKDVRRLRETTA
>NZ_CP040098.1|WP_137423087.1|441648_441939_-|Dabb-family-protein
MIKHVVLIKFKPEVTEDQVDDVERSLDALPGAIPEILSYDFGRDVVHSERSFDFGLVSSFSDLEALERYQEHPDHQAILGKLTSLCDQIIVVDFTF
>NZ_CP040098.1|WP_137423086.1|441133_441607_-|DUF1285-domain-containing-protein
MNPSGPQHQRHVYDYFIDEYGKWFCEGNPVEDPELFRLLSRSLFEKDGGYFIKCEGEVHPVRTADAPLWVRYIHPRTTADGMLQEVEIELEDGRREPLDPETLRVRGERALYCRVTRKRLLARFGKVAYYELARYIDLDQDGFYIVLGGRRYPIRAL
>NZ_CP040098.1|WP_137423085.1|439941_441117_+|amidohydrolase
MRRSIETPFHDWLVELRRFFHQHPELSYQEEKTAARIRSELAALRVPFESGIAETGVVARLRAPRPGPVVAFRADMDGLPLEEANDVPYRSLHPGRMHACGHDGHVTIALGVVRSLVECGWYREGAGEVIVIFQPAEEGGAGAKAMLETGCFDGDMVRAVFAGHMHPDLPVGEVAVAEEVSNAASDMLTLRIRGKGGHGAHPHNCVDPIVAAAQLVAQLQTIVSRELPPLENAVLTIGQFHAGTASNIIPEEAFLEGTLRTLDRERRSRIIERIREMLRGLEISHRVEAAFEVSHGYPVLRNDPALVKRTLEWARDVLGPEAVHVEPPRMGSEDFAYFAERWPAVLIRFGCHDPEEGYRAGLHSPHFDFDERVLDVGTILSTELILRALSD
>NZ_CP040098.1|WP_137425668.1|449921_450386_-|L,D-transpeptidase
MRSPELYIYKGKRRLYVLEGGVLVREYPVGLGPNTVGDKEREGDGRTPEGEFYVCLKNGGSKFFRSLGLSYPTRKHAERAFMAGMISPDEYRDIILALERSSRPPWDTALGGEIFIHGGGAHVDWTDGCVALYDSDMEELYQVAHIGTRVVVRP
>NZ_CP040098.1|WP_137423095.1|450642_452601_-|type-IV-pilus-secretin-PilQ
MHGKGLRPERVVLWGVLVGCALLQLCGCAGTPRDVGAGSALAVGSTQSSEVSAAAVNEPGRAVKILGVQASDFDDRTEIRVLGDGAFSKYQVERDGARSFVLTLEGVRADAVKASIPTPSKRLAGLFLEGLEGDRAVLSATANETLQQLEAHSEGHVLVISVYPGRRGYHESPPEAAPAPRKGAEGRVDGSPGASGSGGRAAVSNAPATYERYGTTSSMAVSDADILGYKEAYRGKPISLDLQDADIENVLRLLADISGMNIVVEPDVVGRVTLKVEAVPWDQVLDMVLMINGLGKEEIGGVIRVASQEKLKQQWKEREERIKTRQELLRAKRDLGEITTEYLQVNYAEPSEIAAKISETKSEDGKIAVDQRTSLLIYTDYPGRIAEARSLLERLDRPTLQVLIEARIVQLSTTASKELGIDWGLDISHDGGQHPWSGGFAINHPPTEGSSMIDFKLKRLGATIWNLDLRLAATEQAGKGKVISAPRVLTMDHVKATISQGTQIPYQEQSEDGISTEFKDATLELQVTPHVTPDGRVRLELQAKKEQPNFVQVIPGQPPAIDTRKIDTELLVEDGHTVVIGGIIEESDSETESRTPGIHKVPLLGRLFKSNTSRLEKNELLIFINPKVVDISGRMTGGGRPGSDSDFMTSGY
>NZ_CP040098.1|WP_170180136.1|452673_453291_-|type-4a-pilus-biogenesis-protein-PilO
MEFKVNPIAAVEGRLSELTNLQRILVFVVMVGVLAGAFYFFKYKPQAQTLRRLTAGIHEHERRLAALQRIAQEVKVFEAEVKKSQEEFEQLLVLLPDRKEIPELLETVSRIGAQDGLENILFQPQAEQTHQFHATIPIRLDLAGGFHQLATFLDKISRLDRIIQVDTLTLNRRDDSSLQVNCVLKTFRFLEEQERPKPAAPNKKR
>NZ_CP040098.1|WP_137423097.1|453393_454047_-|PilN-domain-containing-protein
MIRINLLPFREPVRKTTTRQWVYFYLVGLLAAAGVMGFLWISRDGRIQDLQRKEARLKEEVGRFAKYEVMLKELKAQKEIIEQKKEVIRSLQRDRDHLVRSLTLFSLMTPPERMWFQRFSQSGEQVSISGVAVSNEAIAEFMRNLETSPFVGRGSVSLAHSRMTSMGGSKLREFQLSCKVLPYSAVQKMLSALPQGSAAEPEHGEGKPGPGSSPAGG
>NZ_CP040098.1|WP_137423098.1|454043_455099_-|type-IV-pilus-assembly-protein-PilM
MLRRQTGIVGLDLGSHSVKVVQLTRAKTGWKLVNLGLAILPPGAVVEGRVEQPERVAETAAKLVSHLKTKEKRVASSIAGYEVMIKKIELPSMSEQELESRLKEQLGQYVPYQLEEVNVDYEILGVARDKPNAMDVLLVAAKKESVNDYVGLIRLAGLEPAVIDVDFFALSNAFEVTYGVNLEENVALVDIGASKTGMTVLQGGAPVFTRDLPMGGNEITESIARGLSVPWDQAERLKLGEKAGEAAAAELEKIFVEAVRGWAGGLRRALDFYYTNYPDFAIHRILLSGGSARLPGLPEVLRLETKVPTEVFNPLVRLDYDADQFDPAYLEYIGPQMAICLGLGLRSDENP
>NZ_CP040098.1|WP_137423099.1|455236_455902_+|signal-peptidase-I
MNHLSTRTTAGKRAKGTLREYTEAILVAILLALFIRAFVVQAFKIPSGSMKSTLLVGDHILVSKFAYGVKIPMLDITVSEFDPPQRHDIVVFEYPLDPSKDFIKRVIGLPGDTLEIRNKRVFVNGKLLEEPYVQFTDNQVLPASVSPRDNLEPILVPERSLFVMGDNRDESYDSRFWKFIDFSAVKGKALIIYWSWNKNGRFTFDPQTGYIRWNRIGRLIR
>NZ_CP040098.1|WP_137425669.1|456829_457420_+|GAF-and-ANTAR-domain-containing-protein
MVTAEVMNSSVCSLWLLDEKEGVLRLRATQSINPEYIQDRVLRVGEGIVGKVVVENRPYSIPDVLMDPYYKEKDLARRMGLVSMLSMPMRVKDRVIGVINCYTSYPHVFSELETNILTAVANQAAVAIENTELMVKTKVIQEELEKRKLIERAKDLVMRRLDLSGDEAYRWLQKRSMDTRKSMREVAEAVLLTMEG
>NZ_CP040098.1|WP_137423100.1|457563_458742_-|DUF1343-domain-containing-protein
MAGPCVKPGCEVFLESPPRWFRWSRMGLLANQASCTRDFRHVSQMIHQAGGRLACIFSPQHGFHAEKQANMVESDHGIHPLLGTPIYSLYGQVRRPTEEMLQAIDVLVVDLSDVGTRVYTFGTTLGLCVEAAAEAGLKVVVLDRPNPINGTSVEGNPLKPQWRSFVGRYPIPMRHGLTLGELARFVVREEGLDCDLEVIPAAGWRRDRFHPQTGLPWLWPSPNMPSWESALLYPGLVLLEGTNVSEGRGTTLPFQVFGAPFVRPSLLLNALDVRALDGVVLRPVCFEPTFDKWRGEVCCGFQVHVTEPGRVKPYRLGLAVLKAFLEVHADRFQWLPPPYEYEYEKKPIDILLGDGFLRERLEKGAELPEVEADWQGELEAYRDRRQAGLMYP
>NZ_CP040098.1|WP_137423101.1|458791_459187_-|DUF1992-domain-containing-protein
MSNISTVFEQLAEQRIREAMERGEFDNLPGRGKPLKLEDDRHIPEDLRLAYKILKNADCLPPELQLRKEIHTTKELLSGIRDTEEKYAQIKKLNYLIMKLNTMRRVSPLLEEGQYYYDKVVDRMGSSRERK
>NZ_CP040098.1|WP_137423102.1|459220_459925_+|hypothetical-protein
MSLSTPLQHERETPIQPAPAGITILGAGKFGRLAHRRLARRFPDADLTVVDHAEAKLLALDPSDRTRTLAEDAIAHLSTEHLPPDRWIVPAVPIHVAFLWLLEQLKPNGRVTRLPVPQNVDPQLPHPMRVPGGTVYASYADFLCPDNCPEPEDICTYTRQPRKGHLFETVGGLRVPGYFVHVCRSHQLAPGVGGYTRGQLESLYREVLSNPGNHVIATCCSCHGVLDALSWEKP

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Crispr_ID: NZ_CP040098_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_4

653812-653915

Orphan

Consensus_repeat	Method
GTTGTGTTCCCAAGCTGGAGCTTGGGAACAAGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_4

>merge|NZ_CP040098|4|653812-653915|CRISPRCasFinder
GTTGTGTTCCCAAGCTGGAGCTTGGGAACAAGAAGTTGAAGTCGCACGTTTACAAGGGATTCACCTCGGGTTGTGTTCCCAAGCTGGAGCTTGGGAACAAGAAG

>NZ_CP040098|4|4|653812-653915|CRISPRCasFinder
GTTGTGTTCCCAAGCTGGAGCTTGGGAACAAGAAG	TTGAAGTCGCACGTTTACAAGGGATTCACCTCGG
GTTGTGTTCCCAAGCTGGAGCTTGGGAACAAGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423254.1\|656394_657261_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP040098.1\|WP_137423260.1\|661627_663865_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224070
NZ_CP040098.1\|WP_137425685.1\|642249_643242_-\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_CP040098.1\|WP_137423259.1\|660325_661510_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|224072
NZ_CP040098.1\|WP_137423251.1\|648540_649905_-\|CoA-activase	unknown	unknown	gnl\|CDD\|226109
NZ_CP040098.1\|WP_137423252.1\|649921_652984_-\|CoA-activase	unknown	unknown	gnl\|CDD\|224835
NZ_CP040098.1\|WP_137423249.1\|646374_646644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423257.1\|659059_659632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180158.1\|644663_645908_-\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_CP040098.1\|WP_137425687.1\|654036_654468_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133395
NZ_CP040098.1\|WP_137423256.1\|658371_659049_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NZ_CP040098.1\|WP_137423253.1\|654713_656375_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP040098.1\|WP_137423258.1\|659706_660237_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP040098.1\|WP_137423261.1\|663869_665132_-\|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-A-family-protein	unknown	unknown	gnl\|CDD\|224070
NZ_CP040098.1\|WP_137423245.1\|641387_642332_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP040098.1\|WP_137423247.1\|644028_644667_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377516
NZ_CP040098.1\|WP_137423246.1\|643253_643949_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP040098.1\|WP_137423255.1\|657361_658375_+\|AmmeMemoRadiSam-system-radical-SAM-enzyme	unknown	unknown	gnl\|CDD\|275136
NZ_CP040098.1\|WP_137423250.1\|647062_648544_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NZ_CP040098.1\|WP_137425686.1\|653297_653507_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375932

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137423254.1\|656394_657261_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.78387e-21
NZ_CP040098.1\|WP_137423260.1\|661627_663865_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224070	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion].	3.0206e-80
NZ_CP040098.1\|WP_137425685.1\|642249_643242_-\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP040098.1\|WP_137423259.1\|660325_661510_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|224072	COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy production and conversion].	9.90651e-22
NZ_CP040098.1\|WP_137423251.1\|648540_649905_-\|CoA-activase	gnl\|CDD\|226109	COG3581, COG3581, Uncharacterized protein conserved in bacteria [Function unknown].	4.66806e-42
NZ_CP040098.1\|WP_137423252.1\|649921_652984_-\|CoA-activase	gnl\|CDD\|224835	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].	3.50314e-85
NZ_CP040098.1\|WP_170180158.1\|644663_645908_-\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	1.0339e-124
NZ_CP040098.1\|WP_137425687.1\|654036_654468_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133395	cd04767, HTH_HspR-like_MBC, Helix-Turn-Helix DNA binding domain of putative HspR-like transcription regulators. Putative helix-turn-helix (HTH) transcription regulator HspR-like proteins. Unlike the characterized HspR, these proteins have a C-terminal domain with putative metal binding cysteines (MBC). Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.28768e-55
NZ_CP040098.1\|WP_137423256.1\|658371_659049_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	2.10116e-81
NZ_CP040098.1\|WP_137423253.1\|654713_656375_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP040098.1\|WP_137423258.1\|659706_660237_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	1.29833e-60
NZ_CP040098.1\|WP_137423261.1\|663869_665132_-\|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-A-family-protein	gnl\|CDD\|224070	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion].	2.68424e-157
NZ_CP040098.1\|WP_137423245.1\|641387_642332_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	3.13632e-89
NZ_CP040098.1\|WP_137423247.1\|644028_644667_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	7.72358e-50
NZ_CP040098.1\|WP_137423246.1\|643253_643949_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	7.85831e-72
NZ_CP040098.1\|WP_137423255.1\|657361_658375_+\|AmmeMemoRadiSam-system-radical-SAM-enzyme	gnl\|CDD\|275136	TIGR04337, Radical_SAM, AmmeMemoRadiSam system radical SAM enzyme. Members of this protein family are uncharacterized radical SAM enzymes that occur in a prokaryotic three-gene system along with homologs of mammalian proteins Memo (Mediator of ErbB2-driven cell MOtility) and AMMERCR1 (Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis). Among radical SAM enzymes that have been experimentally characterized, the most closely related in sequence include activases of pyruvate formate-lyase and of benzylsuccinate synthase.	4.03456e-139
NZ_CP040098.1\|WP_137423250.1\|647062_648544_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	2.32813e-166
NZ_CP040098.1\|WP_137425686.1\|653297_653507_-\|hypothetical-protein	gnl\|CDD\|375932	pfam18506, RelB_N, RelB Antitoxin alpha helical domain. This is an alpha helix domain found in the N-terminal region of antitoxin RelB. RelE-RelB (RelBE) is a toxin-antitoxin (TA) protein complex. It is suggested that the toxic action of RelE is counteracted by antitoxin RelB, which wraps around RelE, blocks its active site and prevents sterically the binding to the ribosomal A-site.The long N-terminal alpha-helix of the tightly bound antitoxin RelB covers the presumed active site of the toxin RelE that is formed by a central beta-sheet.	1.31935e-15

>NZ_CP040098.1|WP_137425686.1|653297_653507_-|hypothetical-protein
MLEIHKSIVVDENQKPIAVQIPIKEFERMEEVIENYGLAKLMDEVADDEPVSVQEAKHFYGSLKRDVKS
>NZ_CP040098.1|WP_137423252.1|649921_652984_-|CoA-activase
MVYDVGIDVGSVSVKAVVIVESGDIVWEAPYIRHFGLVREEVVGVLQQIHDRFGAENVRSVSFTGAHGQRLAELLGAPYEVDTIAQVEGAAHLVPGVRTIISMGGHEACLFQLSQNGSQWYLEAFNMNGPCASGTGSFIDQQAERLASSLYGADFEMNAERLQKTLEDFIRLGLEHTHPAPVACRCTVFTKSDMIHLQNKGEPLPNIIAGLHFGNAANYVSTLVANRELHPPIVFIGGMASNPLQVKAFRHYYPEIQVPKHHTALGALGVALLAVKHGWRNRVDPAVLTSEEKPQNSSFPRGERLRLEWTRFSSENSLDPWPVVPKNPLPTFLGVDIGSTTTKYALIDEQGVIRHKCYVPTQGKPIEVTQRLLRSLCSEVGDRIQIRAVATTGSGRNVVGDFLEADLVIDEITAHALGAVAVDADVDTIFEIGGQDSKYIRIERGHPRDFDMNKVCAAGTGSFLHELASKLKINIVGEFQELALSAENPIHLAERCTVFMESDLVSYAQKGARREDLIAGLCYAIVHNYLNRVVGRRHIGGRIMFLGGPSLNQGIVAAFERVLKRPLVVPRHREVMGAYGAALAVREKFHKGEVVPRQRNLEAMAAMKVTFKETICRADPKCHNECKLKVYDFGGRKSIWGGECGRYEVTHYKGAAAANLFEERRRLFEKALAGKAGSLEEATEGVDPGRPVVGIPLALHAVEWGIFWVRLLSELGFRVCLSPRTDERIVSAGLKSMTAETCFPVKVFHGHVRYLLDRVDYLFLPNVIDMPTPGPAEPGMLCPMVAGSQFMVRAALRIPDQRLIRPTIHLREGVESIADAVRRSLPAGFQPRRLPAEKAVEAAWAAAEAFRSELQERGRSVLSELPESEPLWVVTGRPYNLYDERLNLQLGRHLAKLGIQALPMDYLDVDGEDLSDFPRMYWGLGARILRVAKRIARTPNWYGVHLTNFSCGADSFIEHFYRHVMGEKPYLILELDEHSAVAGLLTRIEAYRNVVKTVHAKRFGGRVEPAEPAPAFSCLR
>NZ_CP040098.1|WP_137423251.1|648540_649905_-|CoA-activase
MTVLEASQTPGSICTGIARFDVTGRKLLLPLMTPLGTRFLAAAFRAFGVSAEVMETYKGLAYGREFTSGKECFPCQVTLGDILYHLEKEKERLGSAFSADRYVYFLPESDGPCRFGMYNKYQRLILDRFPEYRDIPIAYLSTQDAYAVAGLLPAHRARYFRRLAYVATIISDVMDRIVWRVRPYERRRGMTDAFMEVSACAMERLIEEVGGRRDFRALYRLLEDVASTARTFIDPRKPRRPRIGIVGEIYLRTHPDSNQDIIRRVEDLGGEVVDASIGEWINFVSYEHSRKLKRQCRLARRRGDRKVFREALQKLVVQEVENAWQRWRQNEVYRVVRRRLDIEPDHSIRSIERFLDQGRHFNFDVGTEAALSIGGALSYLHEGFNGIINVFPFTCMPSTMCSAVLKPILHEKRVPYLDAPYDGSYQPNREAALRTFIYQARQHQAAQGNGRHTP
>NZ_CP040098.1|WP_137423250.1|647062_648544_-|Rne/Rng-family-ribonuclease
MSAQHLLINAVHPEEFRVALVEGQSLQGFFIETATRGKYVGNIYKGIIVNALAGLQAAFVNYGVERHGFLPFSEIHPEYYKRDAGEQAKIQDVIEPGQEVLVQVVKEEIGNKGAALTTYISIAGRYVVLAPGQNQRGVSRKIEDEAGRARLKEMAQELEVPPDIGIILRTVAENRTKREINKDLKYLLRIWDEIKKRAQETPAPALIYKERDLATRVIRDYFNPSVKTILVDDKEVYKMVKDFLRIVSPRHQRIVKLYKGEGPIFNKYKLEDQIDQLFQKRVPLKSGGYLIIDPTEALVAIDVNSGRTTSREGKLEEMCFKVNMEAAAEVPRQLRLRDLGGLIVVDFIDMRSSQHIREVEKRLREEVKCDKAKIKVGRISQFGLLEISRQHLGLNIQLGSYRDCPFCEGTGLVRSTETNALWYLRKIWNGVLRESVASVRATLSLDVANYLLNQKRKDIASLEEHYGKEIIIEGVPHLLPHEGQVELVPCATQ
>NZ_CP040098.1|WP_137423249.1|646374_646644_-|hypothetical-protein
MELKDFVKTAIKNVSRKVADGSLDRNEQGYADPEEMLLDWIWIELKEEAPDKDAVIRLDLDDLYEIIESYADMYEDYQILLESIRTAED
>NZ_CP040098.1|WP_170180158.1|644663_645908_-|class-I-SAM-dependent-rRNA-methyltransferase
MEKGKALARTVRVSSACEKRILRGHRWIFSNEVEERLKEFLPGEWVTVVSGSGRALGVGYINPRSLIAVRLVGAPGQEPTRAFFRDRVEAAVRYRAACYPGASVCRLIFGESDGLPGLVVDRYGDVLVTQVTTAGMAAVEEDLHAVLAERLNPRAIVFRNDTGARQLEGLPLEKGVAYGSLSGPLEVDCHGLRWSVDPLDGQKTGLYLDQRDNREALRRWVQGKRVLDLFCYEGGWSLVAAAAGAAEVTGVDSSEAAVERARENARLNGLSQDVSFVRTEALDYLKRTPRGAFDVIVADPPAFAKTKSVLKQALKGYTDLNRRALLALKPEGILVTSSCSYHVSEQDFQGILLKAALAAGRRLRLLQAGGQALDHPPVLAMPETRYLKCFFVQDVPEFSRPFSASDTFKGGEES
>NZ_CP040098.1|WP_137423247.1|644028_644667_-|ABC-transporter-substrate-binding-protein
MKWGCRSKSRWLAFLVAVVTMSGATWVRAASEPGPMEVIRAGTDRVLEVLNLGGAEPTPERIKQRREEIREIAYDYVSFEEMSKRALGRHWKKLSPQERDEFVELFQKLLYNTYIDRVDTYTGGEEKIYYDQERVEGDYAQIKTRISYKESEIPVEYRMVRTNGKWMVYDVVIEGVSFVNNYRKQFDEVLTNRSFDHLLSVLRDKIAQLEKS
>NZ_CP040098.1|WP_137423246.1|643253_643949_-|DNA-repair-protein-RadC
MKWLDPMTLGPDGHRKRLRERFERGGLEGFHDHEVLELLLTFAIPRRDVKPEARRLLDEFKSLSAVLDAPLAGLCRVKGIGPQAAALISLTSKLLDRYQKDRWKRVNCLQSTRDAVGYLQSLLASERNEVFYVLALNSQNGLIAAEEIQRGTVNRTAVFPRLVVEAVLKHRATAVIFAHNHPGGDPRPSEADRQLTRKLCGILKDLDIAVHDHIIIAGLDYYSFAENGEMR
>NZ_CP040098.1|WP_137425685.1|642249_643242_-|NAD(P)H-quinone-oxidoreductase
MRAIRVEETGKPGDWNKLVVAEVPRPEPAEGEVLVQVEAFSVNRADLLQRRGLYPPPPGASPILGLDCAGYVVELGAGVSRWHVGDRVFAVVAGGGYGRYVVIPEDHLIPIPENLSFTEAAAAAEVFLVAFLNLFLEAGLQKGETLLLHGGGSGVGTAAVQLARESGACVIVTAATAEKIERCLQLGAWAGINYKTEDFARRVRELTDGRGVDVVLDWIGAPYLGKHLDILKPGGRLVIIGLMGGHTGEITLAPLLTKRLKIIGSVLRSRSREEKAELVRRFRSQVLPLLASGSVKPVVDSVFNAEEVETAHQRMQEGGHFGKIVLTWSD
>NZ_CP040098.1|WP_137423245.1|641387_642332_-|ABC-transporter-ATP-binding-protein
MLKRSKRPISGCRRAAILERLSSRGRTRSLSENTLHPLETSETPGPPERWIALEDVSLVRSRRLILDGIHWSIAPGTHWVVLGANGSGKTTLLMVLAGYHWPTRGRVTVLGRRFGEIDLRELRKDIGWVGSFLQAQIPSNQKPLDLIVSGRYAAVGRIFQQPTAEDRELAGNLAECLECSNILGSSYGVLSQGEKQRLLIARALMARPRLLILDEPCAGLDLVAREKLLRSLERLGRAPDCPTFVFVTHHLEEIIPVISHVLVLKDGRVLAQGPKDEVLTSPVLSRAFGISIEVARENGRFRAWAAGGAGFFLS
>NZ_CP040098.1|WP_137425687.1|654036_654468_-|MerR-family-transcriptional-regulator
MESGKALYPIGIVAELLNVHPRTLRIYEQEGLVKPSRRGGKRFYSNNDLQWLKCLRRLLTEDGLNIAGVKKLLTVAPCWEIRGCSEEVRKNCPAILNFPVPCWDLKPRICQEKGRVCAECEVYLKKKNHVMMQRCWNGKKEAS
>NZ_CP040098.1|WP_137423253.1|654713_656375_+|dihydroxy-acid-dehydratase
MRSDLMKKGIEKAPHRSLFKAMGYTRQELERPLIGVVNAANEIIPGHIHLDTIADAVKAGIRHAGGTPIEFSTIGVCDGIAMNHEGMRYSLASRELIADSVEIMAMAHPFDGLVLIPNCDKIVPGMLMAALRLNIPAIVVSGGPMLAGRVGKTPVDLISVFEGVGAFRAGRMSAEELEMLEECACPGCGSCAGMFTANSMNCLSEALGLALPGNGTIPAVAAARVRLAKQAGMQIMELVRRGILPRDIATLEAFRNAVAVDMALGCSTNTVLHVPAIAHEAGIDLPLDLFNALSARTPHLCSLRPGGSHFLEDLDAAGGVQAVLKELSRNQLISGDVLTVTGKTVAENLQTAAVQDPTVIRPLENPYHAQGGIAVLYGNLAPEGAVVKQSAVAPEMLQRTGRARVFESESDAAGAILDGAIEPGDVVVIRYEGPKGGPGMQEMLTPTAAIMGRGLGKDVALITDGRFSGGTQGAAIGHISPEAAAGGPIALIQEGDEIAIDIPNKKLELRVDDATLKERRSRWQPPPPRIRTGYLARYARLVTSGAKGAVFSE
>NZ_CP040098.1|WP_137423254.1|656394_657261_+|methyltransferase-domain-containing-protein
MGYVFRLEDADRLDRWFEREPGRTVFALETELLQRVWSPSRPQRVLEVGCGTGRFLRWFAEQGHLVTGIEPSWELVQRTRWALPQTITVDQGFAEDLPYEDGEFDTVALITTLEFVNNPKQALSEAFRVARRHVLVGFLNKYSLTAIARRLEGFWRPTVYREATFFSVGELRRLAGDLLCGAPADVWRSCLTLPLSLFRYAHPLERCRFFQVHPFGHFVAMRLDIRYTCKTIQDPLRGSLPRGAAPVRLHPSCRRFPASERNQPIKLRPPAAALESSHAVGSHHPEPV
>NZ_CP040098.1|WP_137423255.1|657361_658375_+|AmmeMemoRadiSam-system-radical-SAM-enzyme
MKEAGFYEKLKDLDVQCHLCAHRCRIPPGKRGICGVRENRDGTLYSLVYGRLIAANVDPIEKKPLFHFLPGSRSYSIATVGCNFQCLFCQNADISQAPREHGRIVGETVAPEKVVEDARRTGSATIAYTYTEPTIFMEYALDVAEKARAEGLRNVFVTNGYMTAEALRQADGLIDAANVDLKAFTDTFYRKQCGARLQPVLDTLHLMKSMGIWLEVTTLVIPGLNDDPAELREIARFLVTLGPETPWHVSRFHPTYRLTDRPPTPVETVRKARDIGLEAGLHYVYTGNVFGDRGESTFCHQCGEILLERTGFSVHQRGIKQGACLKCGARVAGVGLP
>NZ_CP040098.1|WP_137423256.1|658371_659049_+|endonuclease-III-domain-containing-protein
MTLSERRGLIERLFRRLLRAFGPQSWWPADSPFEVVVGAILTQNTAWKNVSTAIARLKEAELLDPEAMHRVEEERLAEIIRPSGYFNQKARRLKAFCRNLSERWDGNLDRFLSRDMEELRADCLTLHGIGPETADSIVLYAAQKPSFVVDAYTRRIFSRHGWVPDDIRYDALRDYFMDCLERDVYFFQEYHALLVRLGHRHCRRKPSCSGCPLEGFPPGGPALAP
>NZ_CP040098.1|WP_137423257.1|659059_659632_+|hypothetical-protein
MKPKRSRRQRLQQRTEESRLCAKPMDNESWRRVLGRLNRRLQVFPRDAILQPVRVIEAGIGILNAPMEAYCRATCGDCLDPCCTGRKVFYNRADLLYLVALRKAWPLGQTRVRPEDPCRFLGPRGCLLPRYLRPYVCVWFLCEAHMELFQAEPPTVQRRWIQTLLDIRNARLRLENLFESRFPGDTCDEA
>NZ_CP040098.1|WP_137423258.1|659706_660237_+|shikimate-kinase
MTPRRSPRNVILIGMPGSGKSTLGVLLAKRLGYTFLDTDILIQVQYGRRLEELIAAHGIERFKRIEEAAVLSLQLDGSVVATGGSVVYSPAAMAHLKASGTVAWLHLSCEALERRLGDLDARGVVRSPGQSLRDLYNERCPLYRRYAHVTVRCDGLDHEAALEALCAAIEAASSRE
>NZ_CP040098.1|WP_137423259.1|660325_661510_-|4Fe-4S-dicluster-domain-containing-protein
MSVKVDPNLMKDLRAFGLKDADKCFHCGNCTAICPLSTKENPFPRKLIKYAQMGLKDKILKSPEPWLCYYCGECSVHCPRGADPGETMMVMRRYLTSVYDWTGFSRRFYLSEKFELTAIAVVGFLVGLGMLLFAGEFNTSRVDLEAAWPVEGMEIFDMILGATLTFLLLSNVWRCVKLIMGDMLTKIPLKIYVSEAKELVIHFLTQKRFGQCSDRTQWFIHLLIMTGYTTVFLLVVIFLAGGLKTLGIYAESIAFQRSEPYPFWHPVRLLGYYATIAILLGVGYAIIGRMRKAKPPYKNSHPTDWVFLVLLALTTLTGIGLHCAVHFGLPIFAYSIYIIHMMVAVPMLVLEVPFAKWAHLAYRPVVVYLIRVKERYLLSQGAAAAVQGVAATEG
>NZ_CP040098.1|WP_137423260.1|661627_663865_-|FAD-dependent-oxidoreductase
MEKKIAAYICTGCGIGEALDVEQLAGVVTKECKIPLCKNHPNLCSREGAALIKADIEGEGVNTVMIAACSSRVMTDVFSFPGCIVERVNLREQVAWSQKPGDEDTQMMAEDYIRMASAKINKMELPEPFMPEEEISKDILVVGGGISGLSAALETSRAGFKAILLEKENELGGFQKKVAKQVTFPYKDVTANNIQELIQAVKDDKNITVYTGAKVEKTVGGPGVFKVTVKTNGGTAEHRVGAVVLAAGWKPYDPNKLDPKLGFGRSPDVITNTMFEEMQQKCEIRRPSDGAEVKNVAFLQCAGQRDPKHLPYCSSVCCLTALKQACTIKEYNPEANVFMVYKEMRTPGQAEDFYRKAQQEGVIFIRCQDPEVKTDGAGITVEALDELLGETVVLENLDMVVLATGMVPVTAFGEDYAKMKARLEKQEGEAKTEEDLDVPLDVIRVSDLLNLDYRQGPELPALRYGFPDSNFICFPYETRRTGIYAAGCVRRSMGVAAAAEDGAGAAMKAIQCVELVSQGKAVHPRTGDLSFPEFFMQRCTQCKRCTEECPFGAINEDEKGNPIPHPTRCRRCGVCMGACPERIISFKNYSVGMIGDMIKSIEVPEEDEEKPRILVLACENDAYPALDMAGLRKMTYNPWVRVIPLRCLGSMNLIWVADALSKGIDGVLLLGCQHGENYQCHFIKGSELANIRLSKVKETLDRLVLESDRVRFETCSIIDYANLPKLLDEFAARLEEVGPNPYKGF
>NZ_CP040098.1|WP_137423261.1|663869_665132_-|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-A-family-protein
MANTVTQSILVVGGGMSGLTAAIEAAEAGYDVILVERNPYLGGRVAQFHHYFPKLCPPYCGLEINFRRIKDNPRVRFFTLAEVERVTGAAGDFDVTVKINPRYVNEKCTACGKCAEACSLEIPNPFNYGMDTIKAAYLPHDLAFPMRYVLDPSLVKSPEAQKVKEACPYDAIDLDMQPRSVDLKVGSIVWATGWKPYDSSKLTNYGAGRYPNVITNVMMERLASWNGPTQGKILRPSDGKPPESVAFIQCAGSRDENHLPYCSGICCLASLKQVTYVREQYPDARIYFFYIDIRATDRLEDFYAKVKEDAGVVFFKGKVAKIEEDGATKSLVCRVENTMTEELQEIPVDLVVLATGMVPNTASERVPTPVPYDDYGFVAAMNAMPGIYAAGCTRTPVGVAESVADGTAAALKAIQSIARR

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Crispr_ID: NZ_CP040098_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_5

671676-671772

Orphan

Consensus_repeat	Method
AAATTCTATTTCCCCTCCCCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_5

>merge|NZ_CP040098|5|671676-671772|CRISPRCasFinder
AAATTCTATTTCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGGGAAGAGGGGGATTTTCCACCTTGTTCCCAAATTCTATTTCCCCTCCCCTTG

>NZ_CP040098|5|5|671676-671772|CRISPRCasFinder
AAATTCTATTTCCCCTCCCCTTG	TGGGAGGGGATTAAGGGGAGGGGGAAGAGGGGGATTTTCCACCTTGTTCCC
AAATTCTATTTCCCCTCCCCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423268.1\|674474_674678_+\|cytosolic-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425691.1\|679601_681467_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP040098.1\|WP_137423260.1\|661627_663865_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224070
NZ_CP040098.1\|WP_137423264.1\|669804_671550_+\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP040098.1\|WP_137423265.1\|672146_673178_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|307335
NZ_CP040098.1\|WP_137423259.1\|660325_661510_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|224072
NZ_CP040098.1\|WP_137423266.1\|673279_673849_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP040098.1\|WP_137423257.1\|659059_659632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425688.1\|668853_668922_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423271.1\|681466_682747_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP040098.1\|WP_137425689.1\|675213_675555_+\|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987
NZ_CP040098.1\|WP_137423269.1\|676915_677755_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP040098.1\|WP_137423256.1\|658371_659049_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NZ_CP040098.1\|WP_137423267.1\|674114_674303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425690.1\|675557_676868_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|376389
NZ_CP040098.1\|WP_137423258.1\|659706_660237_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP040098.1\|WP_137423263.1\|666362_667523_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376273
NZ_CP040098.1\|WP_137423261.1\|663869_665132_-\|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-A-family-protein	unknown	unknown	gnl\|CDD\|224070
NZ_CP040098.1\|WP_137423262.1\|665638_665836_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423270.1\|677757_679596_-\|histone-lysine-N-methyltransferase	unknown	unknown	gnl\|CDD\|163684

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425691.1\|679601_681467_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP040098.1\|WP_137423260.1\|661627_663865_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224070	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion].	3.0206e-80
NZ_CP040098.1\|WP_137423264.1\|669804_671550_+\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	3.80067e-07
NZ_CP040098.1\|WP_137423265.1\|672146_673178_+\|U32-family-peptidase	gnl\|CDD\|307335	pfam01136, Peptidase_U32, Peptidase family U32.	5.7453e-33
NZ_CP040098.1\|WP_137423259.1\|660325_661510_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|224072	COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy production and conversion].	9.90651e-22
NZ_CP040098.1\|WP_137423271.1\|681466_682747_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP040098.1\|WP_137425689.1\|675213_675555_+\|divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	9.32755e-51
NZ_CP040098.1\|WP_137423269.1\|676915_677755_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	7.72962e-57
NZ_CP040098.1\|WP_137423256.1\|658371_659049_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	2.10116e-81
NZ_CP040098.1\|WP_137425690.1\|675557_676868_-\|histidinol-dehydrogenase	gnl\|CDD\|376389	pfam00815, Histidinol_dh, Histidinol dehydrogenase.	0
NZ_CP040098.1\|WP_137423258.1\|659706_660237_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	1.29833e-60
NZ_CP040098.1\|WP_137423263.1\|666362_667523_+\|hypothetical-protein	gnl\|CDD\|376273	pfam18854, baeRF_family10, Bacterial archaeo-eukaryotic release factor family 10. Bacterial family of the archaeo-eukaryotic release factor superfamily. Likely to play roles in biological conflicts or regulation under stress conditions at the ribosome.	2.94361e-35
NZ_CP040098.1\|WP_137423261.1\|663869_665132_-\|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-A-family-protein	gnl\|CDD\|224070	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion].	2.68424e-157
NZ_CP040098.1\|WP_137423266.1\|673279_673849_-\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	6.94769e-50
NZ_CP040098.1\|WP_137423270.1\|677757_679596_-\|histone-lysine-N-methyltransferase	gnl\|CDD\|163684	cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	8.70206e-170

>NZ_CP040098.1|WP_137423264.1|669804_671550_+|VCBS-repeat-containing-protein
MRNNHGFIPFLFLAMLVLFGSFRQAPHVQAAEPEDPVRVAILPFSMHTPPDLSYLQDGIWEMLASRLAWEGKVQVVPKSQIQNTLGSLSGDLSQDAALNIGRSLEADYVLFGSVTALGQAVSLDAKMAGTEPGAEPLSFHTQSGTLDQLIPAVSNFAQDINRKLFGRAPAAVAAATVDTSPSNVNPESLIPDMMLQGASISYLNPNFVEVNPDEALTGQGLWRSQTFKETIISIDVGDLDGDGSQELVTASPDRLAVYRRVAQGLQLVLEHRADKMERFVWVSTVDLDGDGRDEVVLTNMRTVNSPQASSEKVSGRQHTEEFPASKVFSLQGTALKTLADRQPFYLNAVHIPKRGKILLGQKPGPNTELFDPEIYHIQLRGSELVPIAPFHLPQHCNVFNFVVADINGDGSDETAFISSDNRLVLLDSAGSPIWRSRQRFGATTNVLAGKVTDLRYNQIDYFYVPTRILVTDLNRDAIPELVVNRSPDYSAFLPQGFKYFEAGEIVSYSWDQLGMVENWKTREMQGMLTSLALGDLNDDGTPELIASLVTGQDLTKLWESKSTIFSYDLNVKRAEKTAQKP
>NZ_CP040098.1|WP_137425688.1|668853_668922_-|hypothetical-protein
MKATSTAVTAAAISAQTPRTWK
>NZ_CP040098.1|WP_137423263.1|666362_667523_+|hypothetical-protein
MKIIDPSLFENLSQRRAPEDSWILSVYVNLDPALRGNRRGGYKLVVERLLKDLENQIDDEAKREHFREDAEWVRRQVNLHIPGGKSFVLFCDVSDGFTFVEDLPVRVASGAWYGKTPYVRPLLEAWREYERYGVVLVDREKARLLVLSVGQVEEVDEAFQTPAVKHRRTSGSDHMRSQMVFQRRAATWSNWFLKEVGDKVHDMLAVHDIDRILLAGPEEITAELERLLPKAVASRVVGRLRLPISAKPDEVLEAALPVIQELEEQESLLLVEDLVTVARKTENAPKAVTGLNSTLNAVNQGRVFQLVILPEHRMPGFHCPGCGVLLDHAPPEGACPYCSKPLEPTDDIIWLASERVLSMGGKVEEVRGEEARAALQSAGGIGAYLR
>NZ_CP040098.1|WP_137423262.1|665638_665836_+|hypothetical-protein
MMDEKQEKKWLGPLIKMMLSLAILFPLYALLYITFPASVVAFYVIAAALFAAFAPWDELKRRFLS
>NZ_CP040098.1|WP_137423261.1|663869_665132_-|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-A-family-protein
MANTVTQSILVVGGGMSGLTAAIEAAEAGYDVILVERNPYLGGRVAQFHHYFPKLCPPYCGLEINFRRIKDNPRVRFFTLAEVERVTGAAGDFDVTVKINPRYVNEKCTACGKCAEACSLEIPNPFNYGMDTIKAAYLPHDLAFPMRYVLDPSLVKSPEAQKVKEACPYDAIDLDMQPRSVDLKVGSIVWATGWKPYDSSKLTNYGAGRYPNVITNVMMERLASWNGPTQGKILRPSDGKPPESVAFIQCAGSRDENHLPYCSGICCLASLKQVTYVREQYPDARIYFFYIDIRATDRLEDFYAKVKEDAGVVFFKGKVAKIEEDGATKSLVCRVENTMTEELQEIPVDLVVLATGMVPNTASERVPTPVPYDDYGFVAAMNAMPGIYAAGCTRTPVGVAESVADGTAAALKAIQSIARR
>NZ_CP040098.1|WP_137423260.1|661627_663865_-|FAD-dependent-oxidoreductase
MEKKIAAYICTGCGIGEALDVEQLAGVVTKECKIPLCKNHPNLCSREGAALIKADIEGEGVNTVMIAACSSRVMTDVFSFPGCIVERVNLREQVAWSQKPGDEDTQMMAEDYIRMASAKINKMELPEPFMPEEEISKDILVVGGGISGLSAALETSRAGFKAILLEKENELGGFQKKVAKQVTFPYKDVTANNIQELIQAVKDDKNITVYTGAKVEKTVGGPGVFKVTVKTNGGTAEHRVGAVVLAAGWKPYDPNKLDPKLGFGRSPDVITNTMFEEMQQKCEIRRPSDGAEVKNVAFLQCAGQRDPKHLPYCSSVCCLTALKQACTIKEYNPEANVFMVYKEMRTPGQAEDFYRKAQQEGVIFIRCQDPEVKTDGAGITVEALDELLGETVVLENLDMVVLATGMVPVTAFGEDYAKMKARLEKQEGEAKTEEDLDVPLDVIRVSDLLNLDYRQGPELPALRYGFPDSNFICFPYETRRTGIYAAGCVRRSMGVAAAAEDGAGAAMKAIQCVELVSQGKAVHPRTGDLSFPEFFMQRCTQCKRCTEECPFGAINEDEKGNPIPHPTRCRRCGVCMGACPERIISFKNYSVGMIGDMIKSIEVPEEDEEKPRILVLACENDAYPALDMAGLRKMTYNPWVRVIPLRCLGSMNLIWVADALSKGIDGVLLLGCQHGENYQCHFIKGSELANIRLSKVKETLDRLVLESDRVRFETCSIIDYANLPKLLDEFAARLEEVGPNPYKGF
>NZ_CP040098.1|WP_137423259.1|660325_661510_-|4Fe-4S-dicluster-domain-containing-protein
MSVKVDPNLMKDLRAFGLKDADKCFHCGNCTAICPLSTKENPFPRKLIKYAQMGLKDKILKSPEPWLCYYCGECSVHCPRGADPGETMMVMRRYLTSVYDWTGFSRRFYLSEKFELTAIAVVGFLVGLGMLLFAGEFNTSRVDLEAAWPVEGMEIFDMILGATLTFLLLSNVWRCVKLIMGDMLTKIPLKIYVSEAKELVIHFLTQKRFGQCSDRTQWFIHLLIMTGYTTVFLLVVIFLAGGLKTLGIYAESIAFQRSEPYPFWHPVRLLGYYATIAILLGVGYAIIGRMRKAKPPYKNSHPTDWVFLVLLALTTLTGIGLHCAVHFGLPIFAYSIYIIHMMVAVPMLVLEVPFAKWAHLAYRPVVVYLIRVKERYLLSQGAAAAVQGVAATEG
>NZ_CP040098.1|WP_137423258.1|659706_660237_+|shikimate-kinase
MTPRRSPRNVILIGMPGSGKSTLGVLLAKRLGYTFLDTDILIQVQYGRRLEELIAAHGIERFKRIEEAAVLSLQLDGSVVATGGSVVYSPAAMAHLKASGTVAWLHLSCEALERRLGDLDARGVVRSPGQSLRDLYNERCPLYRRYAHVTVRCDGLDHEAALEALCAAIEAASSRE
>NZ_CP040098.1|WP_137423257.1|659059_659632_+|hypothetical-protein
MKPKRSRRQRLQQRTEESRLCAKPMDNESWRRVLGRLNRRLQVFPRDAILQPVRVIEAGIGILNAPMEAYCRATCGDCLDPCCTGRKVFYNRADLLYLVALRKAWPLGQTRVRPEDPCRFLGPRGCLLPRYLRPYVCVWFLCEAHMELFQAEPPTVQRRWIQTLLDIRNARLRLENLFESRFPGDTCDEA
>NZ_CP040098.1|WP_137423256.1|658371_659049_+|endonuclease-III-domain-containing-protein
MTLSERRGLIERLFRRLLRAFGPQSWWPADSPFEVVVGAILTQNTAWKNVSTAIARLKEAELLDPEAMHRVEEERLAEIIRPSGYFNQKARRLKAFCRNLSERWDGNLDRFLSRDMEELRADCLTLHGIGPETADSIVLYAAQKPSFVVDAYTRRIFSRHGWVPDDIRYDALRDYFMDCLERDVYFFQEYHALLVRLGHRHCRRKPSCSGCPLEGFPPGGPALAP
>NZ_CP040098.1|WP_137423265.1|672146_673178_+|U32-family-peptidase
MNELLAPGGTLAMVDAVFTHGTDAVYVGCKGFSRRKCAWELEDSQIREAIDIARRHGGKVRVAVNADVPEDKWLVVLGKIAKYAAWGAEGVIVKTPSVMTMVRDNFPELVIHASVGCNIQTPAQIAQYKAYGATQVVASTEIDTVEKLRTFKAAADAVGVATELLVHGNRCVGGVGNCSFHELISDSYIKRTYRDEDGNEIVEYEGWPDRSGSCFRLCLLTEAQREKVLKQRGRSEKEIRDINERIRRRPNVAFAINGKELWDIMDLGIATLKVQGREYAVSLISRMIALYRAMIQAHARGQSHDDPNLLALQAELDAIARDRDRARMEKTRELHRNIKGLYA
>NZ_CP040098.1|WP_137423266.1|673279_673849_-|isochorismatase-family-protein
MTENIYGEFLDRNDCVLLLVDVQKAILDLCVEPARLRKHCAALIEIASIFQIPMVFSQHNPEKLGGFLPELVAMSPEPIVMDKLEFSCLENEAMARRLESLGRRTLLLCGMETHVCIFHTGAHAARLGYRVHVAGDAVSSRSTYNWETGLRRLEHAGAVVSSTEMIIYELLNRAGTPEFRQALPLLKRL
>NZ_CP040098.1|WP_137423267.1|674114_674303_+|hypothetical-protein
MEWAWRLGILVLGGVPAIIGGGLFWHFFENWTSVVVWEIVLLFLLSLIISKGDKKAKNEAHG
>NZ_CP040098.1|WP_137423268.1|674474_674678_+|cytosolic-protein
MECKKDQNLQRCNCTYDPCPRKGICCECLQYHLKSRELPACCFPADAERTYDRSFEHFARLVSQKKV
>NZ_CP040098.1|WP_137425689.1|675213_675555_+|divalent-cation-tolerance-protein-CutA
MRDEALVVLVTAGNRDEAARIAKALVEDRLAACVNIVPSIRSIYTWQGEVCDDEELLLIIKTRKGVMDGLKVRVRELHSYEVPEVIAFSICDGSIDYLAWIEESTRNPRTAPR
>NZ_CP040098.1|WP_137425690.1|675557_676868_-|histidinol-dehydrogenase
MPVLDYPSSAAEERLLRIERRRPGADPELESRVSEILSAVRREGDAALVGFTRRFDAPEFREEQLLVSEREVQAAYDRVDRSFFDTLERARAHIEAFHRWQLRSSWFMTRDDGTFLGQILRPVASAGLYIPGGKGGETPLISTVLMTAVPARVAGVSDIAMVTPPRRDGTVNPYLLVTAKEVGVRRIHRIGSAWAVAALAFGTPSVRPVDVIVGPGNIYVTLAKKLVSGEVGIDLLAGPSEILVLADETASPEHVAADLLSQAEHDPLASAVLVTTDPSLARAAAVGLERRLGELPRRDVIREALNRYGAIFRVQNLEQAVGLANRLAPEHLEIQVRDPWACLGKIHNAGAVFIGTHTPEPIGDYFAGPNHVLPTAGTARFASALSVDHFVKKTSIVAYSQEAFARDAEAVMQLARLEGLDAHAASIRARMEADQR
>NZ_CP040098.1|WP_137423269.1|676915_677755_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MPGGNEIRTTAGGKRLRVAGWLKICVWLAVAALSMSGCGGRKPAPEPSVSMLAVPTPPPLRGQRPYQINGTWYYPLPSAEGYEEEGLASWYGRDWHGRPTASGEPYNMYAMTAAHKILPLGTHVKVTHQVTGRSILVRINDRGPFVSGRIIDLSYEAAKALGMAGEGVAPVHVAAVQVASPQVVAGTTVWQVEPIRAYRAGPFTVQVGAFREPENAQRLQARMAPEYQPVRLTPFRHEGSLYYRVQIGRFGDLDRALEALDRLRERGFSDAFVVALEET
>NZ_CP040098.1|WP_137423270.1|677757_679596_-|histone-lysine-N-methyltransferase
MARWNAQKRVLEHEHSQFWRHRLVDVAEPNLMRSVFPYEEVPKVDFDHKLLPIDPAEDIFITDTTFRDGQQARPPYTVKQIETIFDFLHRLSGPNGVIRQAEFFLYTDKDREALERCLARGYRYPEITGWIRAVEADMQLVVDMGLQETGILSSVSDYHIFLKLKWSRKEALDRYLGIAKAALEKGIKPRCHFEDITRADIYEFCIPLAIELMKLREESGVDIKIRLCDTMGFGVTYPGAALPRSVPKLVRAFIDEAGVPGHLLEWHGHNDFHKVLVNASTAWLYGCSGANGTLLGFGERTGNAPIEGLIIEYLALRGDSAGIDTTAITDVAEYFQKELGYRIPPNYPFVGEDFNATRAGIHADGLVKDEEIYNVFNTQKILKRPISIIITDKSGVASVAYWVNSRLRLPPESRLDKRHPGIVKIHKRIMEEYAKGRNTSISNEELERWSRRYLPEYFVSEFDRLKARAHSLAAHLVAEVVENEAIKSMDPELQEPVLQTLVDLNPFIQYIYITDSEGRKITRNITHIVDKAKYESAKVGEDLSDRPWFVGPMKDGKVHVTDFYTSRYTSALCITVSAPIRNEMEEIVGVLGIDIRFEDLAKMEEMEKAGRG
>NZ_CP040098.1|WP_137425691.1|679601_681467_-|aspartate--tRNA-ligase
MTHDATLPGERFKDDPEAKELEAQKVTLDSLGDWVKTHDCNSLGTGNVGARVRLMGWVDRRRDHGGLIFIDLRDREGVTQVVFDPQADETSHRRAHALRSEYVIAVEGTVRLRPEGMANPRLVTGGIEVLVHELRILNTSRTPPFPIEDDTDANESIRLRYRYLDLRRPSMMRNLKLRHQAAVLTRNYFAQRGFLEVETPILTRSTPEGARDYLVPSRVSPGNFYALPQSPQIFKQLLMVAGFERYMQLVKCFRDEDLRADRQPEFTQLDLEMSFITEEQIYELIEGWIEALFRELAGVSLETPFPRITYAEAVDRYGTDRPDIRYGLELVDVTDIARRSDVRVFQQAVERGGVVKAIRLPEGGRLSRKELDELIEYVKIFGAKGMAWIKLQPDGWQSPIAKFLGDPVREALGQRLQARQGDILFFVADQPGIVHDALGNLRVRLAQQLALMDTSVYKFTWVTQFPLLEWDADEKRFTAVHHPFTAPMEEDLDRLETQPEAVRSRAYDLVLNGTELGGGSIRIHRHDVQQRLFAALGIGAEEAEEKFGFLLEALQYGAPPHGGIAFGFDRLIMLMSGSSSIRDVIAFPKTQKATCLMSGAPSEPDINQLLELCVKIEKAGR
>NZ_CP040098.1|WP_137423271.1|681466_682747_-|histidine--tRNA-ligase
MEYIQAVKGMNDILPHDIGWWQKVEATAREVLETFGYREIRTPLVEKLELFARSIGESTDIVEKEMYAFPDRKGRWLTLRPEATASIVRAFIERNLQSDPLARKFYTLGPMFRHERPQKGRYRQFHQIDAEAFGIDDPMLDAEIMFMLRCFLEKLGIGGVKLHINSLGCRECRKPFRESLQAFLEERIAALCPDCARRSRVNPLRAFDCKVEQCREQMEEAPALLDFLCRDCAEHFEAVKRHLDRLETPYRIDPRMVRGLDYYMRTTFEVITDQLGAQNAVGGGGRYDGLMKDLGGPDLPGIGFAIGMERLILLLQQSQDGTLKTPEIFLASVGDDARDRCFLMVQRLRDRGVAAEMEYGNAGLKSQMRRADKLGARYVLILGQDEIQRNAAPLRDMIEKNQVEVPLATAVDFLTEFIRKHSTRNR

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Crispr_ID: NZ_CP040098_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_6

698592-698700

Orphan

Consensus_repeat	Method
GAATTCTATTTCCCCTCCCCCTGTGGGAGGGGATTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_6

>merge|NZ_CP040098|6|698592-698700|CRISPRCasFinder
GAATTCTATTTCCCCTCCCCCTGTGGGAGGGGATTAAGCAAAGGTCCAGTTACGATTTCAAGCTGTGCCATGAATTCTATTTCCCCTCCCCTTGTGGGAGGGGATTAAG

>NZ_CP040098|6|6|698592-698700|CRISPRCasFinder
GAATTCTATTTCCCCTCCCCCTGTGGGAGGGGATTAAG	CAAAGGTCCAGTTACGATTTCAAGCTGTGCCAT
GAATTCTATTTCCCCTCCCCTTGTGGGAGGGGATTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425694.1\|703063_704017_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225901
NZ_CP040098.1\|WP_137423289.1\|706634_707423_+\|thiazole-biosynthesis-protein	unknown	unknown	gnl\|CDD\|235241
NZ_CP040098.1\|WP_137423290.1\|708510_710190_+\|methylmalonyl-CoA-mutase-family-protein	unknown	unknown	gnl\|CDD\|239652
NZ_CP040098.1\|WP_137423282.1\|695278_695971_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225871
NZ_CP040098.1\|WP_137425692.1\|693542_694823_+\|FliI/YscN-family-ATPase	unknown	unknown	gnl\|CDD\|274607
NZ_CP040098.1\|WP_137423284.1\|698723_699368_+\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|376825
NZ_CP040098.1\|WP_137423277.1\|689564_689864_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|376721
NZ_CP040098.1\|WP_170180160.1\|701259_702030_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP040098.1\|WP_170180161.1\|704405_704804_-\|DUF3783-domain-containing-protein	unknown	unknown	gnl\|CDD\|378901
NZ_CP040098.1\|WP_137423278.1\|690197_691790_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP040098.1\|WP_137423283.1\|696583_697915_+\|DUF362-domain-containing-protein	unknown	unknown	gnl\|CDD\|377193
NZ_CP040098.1\|WP_137423279.1\|691794_692796_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_CP040098.1\|WP_137423288.1\|705207_706491_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|376689
NZ_CP040098.1\|WP_137425693.1\|700210_701263_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP040098.1\|WP_137423276.1\|689104_689542_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP040098.1\|WP_170180159.1\|688715_689105_+\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|180196
NZ_CP040098.1\|WP_137423281.1\|694839_695295_+\|flagellar-FliJ-family-protein	unknown	unknown	gnl\|CDD\|181091
NZ_CP040098.1\|WP_137425695.1\|707730_708105_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|237730
NZ_CP040098.1\|WP_137423285.1\|699476_700193_+\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|381172
NZ_CP040098.1\|WP_137423280.1\|692788_693475_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235562

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425694.1\|703063_704017_+\|hypothetical-protein	gnl\|CDD\|225901	COG3366, COG3366, Uncharacterized protein conserved in archaea [Function unknown].	2.33349e-38
NZ_CP040098.1\|WP_137423289.1\|706634_707423_+\|thiazole-biosynthesis-protein	gnl\|CDD\|235241	PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional.	4.25722e-146
NZ_CP040098.1\|WP_137423290.1\|708510_710190_+\|methylmalonyl-CoA-mutase-family-protein	gnl\|CDD\|239652	cd03680, MM_CoA_mutase_ICM_like, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, isobutyryl-CoA mutase (ICM)-like subfamily; contains archaeal and bacterial proteins similar to the large subunit of Streptomyces cinnamonensis coenzyme B12-dependent ICM. ICM from S. cinnamonensis is comprised of a large and a small subunit. The holoenzyme appears to be an alpha2beta2 heterotetramer with up to 2 molecules of coenzyme B12 bound. The small subunit binds coenzyme B12. ICM catalyzes the reversible rearrangement of n-butyryl-CoA to isobutyryl-CoA, intermediates in fatty acid and valine catabolism, which in S. cinnamonensis can be converted to methylmalonyl-CoA and used in polyketide synthesis.	0
NZ_CP040098.1\|WP_137423282.1\|695278_695971_+\|hypothetical-protein	gnl\|CDD\|225871	COG3334, COG3334, Uncharacterized conserved protein [Function unknown].	9.78338e-13
NZ_CP040098.1\|WP_137425692.1\|693542_694823_+\|FliI/YscN-family-ATPase	gnl\|CDD\|274607	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility].	0
NZ_CP040098.1\|WP_137423284.1\|698723_699368_+\|precorrin-8X-methylmutase	gnl\|CDD\|376825	pfam02570, CbiC, Precorrin-8X methylmutase. This is a family Precorrin-8X methylmutases also known as Precorrin isomerase, CbiC/CobH, EC:5.4.1.2. This enzyme catalyzes the reaction: Precorrin-8X <=> hydrogenobyrinate. This enzyme is part of the Cobalamin (vitamin B12) biosynthetic pathway and catalyzes a methyl rearrangement.	2.37125e-94
NZ_CP040098.1\|WP_137423277.1\|689564_689864_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|376721	pfam02049, FliE, Flagellar hook-basal body complex protein FliE.	2.74213e-23
NZ_CP040098.1\|WP_170180160.1\|701259_702030_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	5.52669e-105
NZ_CP040098.1\|WP_170180161.1\|704405_704804_-\|DUF3783-domain-containing-protein	gnl\|CDD\|378901	pfam12646, DUF3783, Domain of unknown function (DUF3783). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 60 amino acids in length.	2.84894e-14
NZ_CP040098.1\|WP_137423278.1\|690197_691790_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	3.84974e-164
NZ_CP040098.1\|WP_137423283.1\|696583_697915_+\|DUF362-domain-containing-protein	gnl\|CDD\|377193	pfam04015, DUF362, Domain of unknown function (DUF362). Domain that is sometimes present in iron-sulphur proteins.	9.33208e-40
NZ_CP040098.1\|WP_137423279.1\|691794_692796_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	1.29275e-124
NZ_CP040098.1\|WP_137423288.1\|705207_706491_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|376689	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis. Thic is a member of the radical SAM superfamily.	0
NZ_CP040098.1\|WP_137425693.1\|700210_701263_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	9.24275e-84
NZ_CP040098.1\|WP_137423276.1\|689104_689542_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	8.13798e-54
NZ_CP040098.1\|WP_170180159.1\|688715_689105_+\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|180196	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.	3.97169e-22
NZ_CP040098.1\|WP_137423281.1\|694839_695295_+\|flagellar-FliJ-family-protein	gnl\|CDD\|181091	PRK07720, fliJ, flagellar biosynthesis chaperone FliJ.	7.93718e-05
NZ_CP040098.1\|WP_137425695.1\|707730_708105_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|237730	PRK14493, PRK14493, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional.	5.77291e-14
NZ_CP040098.1\|WP_137423285.1\|699476_700193_+\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|381172	cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase, also named CobI or CbiL. Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.	2.0547e-97
NZ_CP040098.1\|WP_137423280.1\|692788_693475_+\|hypothetical-protein	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	8.0665e-20

>NZ_CP040098.1|WP_137423283.1|696583_697915_+|DUF362-domain-containing-protein
MTPHRVSIVRYRTPGESVRRAVDLAGGLPPLKSGARVFIKPNIVFWTRAVPFPKWGVITTSRVMEDMVKLLKAHGVDDITIGEGIITADPRDRETPDHAFTTLGYGVLAKRYGVKTLNVMDDDFAPVEIGEGTTLNFCARALESDLIVDLPVLKTHNQTVVTLGIKNLKGLIDIPSRKKCHRMDDEADLHAMVARLPDRLPAVFTVIDGIYSAERGPAFDGKMHRSDLLIASADLLSADLVGARVLGHDPADVPHLAYAARNHGRPLDLSDIEVVGEPIEAVARFHAYDFDYAQDSDGNWLPVPLIKQGIRGLSYPKYDLTMCTYCSGINGVVLSAIRYAWKGEPFDDVEVLTGKVMKPTPGKKKTILLGKCMYQAHKNNPDINEMIAVKGCPPKPEDILNALHQAGIDADPALFAGMDRFPGFFMARYQGKPEFDEAFFRVQ
>NZ_CP040098.1|WP_137423282.1|695278_695971_+|hypothetical-protein
MNPKSDAPMTATKKRPGGRRLSAGVLAICGVALLKALLAFGIFIADNSEKAEVLSPPEVQAEESAPAPAAGQAGTTPTEQGAAEGKALEPPVVDLTPEMVAYVKEREAALERKEAELREREAYLAKMEKELEQKLKELLSLQEKMKTIQEEIQTYRAQREEESNQQIRSLGKIYSTMKPKEAAKLLENLEEELVVRIITTLPPDQAADILANMDVKKAAKISTALCVANP
>NZ_CP040098.1|WP_137423281.1|694839_695295_+|flagellar-FliJ-family-protein
MTFHFRFEATLKRQEGLFQEARMAFARARRKVLELQERKSRFRSDIWKQKELLSDQQRRGMNVSYYLAFTEHLAGLEHKLHTLEEELLRARKDLDNKHRELLACEMQLKQLEHLKTRDLEAYRNGVRKAEQKQLDELSGGRGVRAQDESQI
>NZ_CP040098.1|WP_137425692.1|693542_694823_+|FliI/YscN-family-ATPase
MLLDRPPWQTYGKVARLVGNLLEVQGLKAARGDICRVFPSESNNPVYAEVVGFGERRLKLSPLTPINGIRPGDLAMKHPHSDTVQAGEALLGRVIDGMGAPIDGKGPLPAGKPYALNRPAVNPLERPVIREQLDVGVRCINGLLPIGKGQRMGIFAGSGVGKSTLLGMMARYTTAPVNVIALIGERGREVNEFLQDELGADGLAHSVVVVATSDQPATLRLRGAYVACAVAEYFKDTGRDVLFMMDSVTRFAMAAREIGLAAGEPPTTKGYPPSVYGLLAQVLERTGNFREASITGIYTVLVEGDDLDDPVADTVRSILDGHIVLDRALAHQRHYPAIDPLKSVSRLTDRLLDAEQKRFAARFIQTLAHYRNSEDMIQIGAYVKGTHPDTDYAISMIQKLNEYLRQDVTDRCTVAESLKWLKTLFA
>NZ_CP040098.1|WP_137423280.1|692788_693475_+|hypothetical-protein
MSKIIKARETDDLNAFGFAEIRQSERKAPAAGTRSGLEAELESVEAFEESLRRRLLEAERAAQELEREGYEKGYVQGQKDGFEFGKRSMAVVKEQLERLLAGLSETPERVFKDYRQWLVETALAVARRVVRAELETRPELIQRLINDMLQEAEEHQSLTLVLHPKDLRLLQEYTDFKIPGPERSNAFAVKTDESIERGGCIIESDIQRIDATMETRFELIREALESHE
>NZ_CP040098.1|WP_137423279.1|691794_692796_+|flagellar-motor-switch-protein-FliG
MAKVSGVQKAAIALLALGEEASAPIFKSLSPGEIQKLGAQMSNIQIVDKQTTDEVLNELIARMQEAGSISLPGNQFLHKLLPAVLGREQAESVLAKIEEDNQKVPFKNIQDVDARILANFIRGEHPQTIAIILAHLGHEKASEVIGLLPENLQFEAVSRMANLETVPPDLLREVDEVLERELFSVSKGSYKTLGGIQSVAEILNRCDRRTGDNILQALEDYDSDLADKIRKLMFVFDDLVGVNDLGIRELLKEVSNDDLTLALKTASEEVKNKILQNLSQRASQMLLEDLEVMGPVRLSDVEGAQQNILNVARRLEKEGRLILARGEGGDNFV
>NZ_CP040098.1|WP_137423278.1|690197_691790_+|flagellar-M-ring-protein-FliF
MNRLAAFLRRLKASFTALPLPQKLLTAGSVLMVVASLAYLAHSVNSVTYAPVYTGLSEPDMAAVVESLKAKKLPYRLVDGQSIEVPEDQLYEIRLALASEGLPKGSGVGFEIFDKQRLGSTAFVQKINYQRALQGELVRTINQMEEVEESRVHLVLPEDTVFVEDRQPPRAAVFLKLKPGARLEERQLQALVNLVASAVQGLESENVTIMSTDGEVFYKKTGEDTPFAANSFQMEYRHRLEESLREKVQSMLEPVLGSDKVVARVTAELDFSEIAVTEDIYDPDSAVVRSQQRSVENSEGTGVGARGNPDAPINLESRLLESATPENRQRSTSRQRETVNYEINRVSRQITRAPGSIKKLSVAVIVDGPYKVETAEGQDARKVFVGRTPEELKRLEDVVKKAVGYDENRGDQITVSNVAFATEAFPDGAVSGPELDWLDLLRRHQKLIFNLLLLLLVFLFVIRPFMKRFQHMTVGGEQDRAAALPGTAEEGLLEGPQRKELPVKEQAIALTLENPYQAAQVIRTWLKEES
>NZ_CP040098.1|WP_137423277.1|689564_689864_+|flagellar-hook-basal-body-complex-protein-FliE
MRIGSIAQGMKRLEGPGGTFGRSDKAAVSFTSELKERVSEVDELQHQAEKTMREGAIRGAENIHEAMIKLQEAEIGLQFLVKVRDKALEAYQDVMRMQF
>NZ_CP040098.1|WP_137423276.1|689104_689542_+|flagellar-basal-body-rod-protein-FlgC
MDFETSMRISSSGMRAHRAWMNVLSANLANVNTTRGPDGKPYQRRTILYESVPYAGSFQEAMESALEDGLQQVDVVGIVPDGRDFRRVYDPSHPDADEDGIVLLPNISAVEEMANLLDATRSYEANLAALNMAKQLALKSLELGK
>NZ_CP040098.1|WP_170180159.1|688715_689105_+|flagellar-basal-body-rod-protein-FlgB
MSDSSVFDRTVQLMQDRLDLNALNHKVISSNLANINTPRYVAKSLSFDRVLKESLEEGAIALECSHFRHENPTDPVEALRSPAMEETGPVDLDHEMVRLSRNNIEYQFMVTMLNKKFALLKQAINAGGR
>NZ_CP040098.1|WP_137423284.1|698723_699368_+|precorrin-8X-methylmutase
MDRPGLVAAGQAVEAESFRIIDREMGAHAFPPEQWEVVRRVIHTTGDFDYADRIRFRPESLAAGVQALRAGASIFADTRMIQVGLSPWRLGWFGNPVVVPAAEPEAQAAAEQQATTRTAAAFRNRARELEGSVVAVGNAPTALLEVVRLAREENLRPALVVGVPVGFVNAEESKTLLWETESLPCITVLGRKGGSTVAVAVLHALLELARRHPA
>NZ_CP040098.1|WP_137423285.1|699476_700193_+|precorrin-2-C(20)-methyltransferase
MLGTLYGIGVGPGDPELLTLKAVKTLKNVHHVFAASSSKNNYSLALDIVREHLPGGVPVSILDFPMTFDQDHLEEAWQANCETVVQVLESGRNAAFLTLGDPLTFSTFIYLSRKIRRRLPAVAVETIPGITAFQAAAACSALPLAEGEETITVISGAKGGERLKDVIGFSDNVVLMKTYKQFPQILSAVEELGLQDHCCFVSRCGLDGQMVEKEFDKLTRLKPHYLSLMIVKKRGLDA
>NZ_CP040098.1|WP_137425693.1|700210_701263_+|iron-ABC-transporter-permease
MEAPRGFRKPAPLWWIGLLGLSLAAAFVSAGMGPYDIPYPDIARVVLSPLRPETAGSVDETLRYIVIHVRLARIFLALEVGAALALAGAVYQGVLLNPLADPFTLGVSTGAAFGATLAILVGWGGMALGGFQTLPAAAFAGALGALYLVYLLGRLDGRVHATTLILAGIIVSTFLSAWISLLKSLNEDSLSTIVFWIMGSLSGRSWTHGLWMLPYLAAGSAAILYYARELDLLSLGDVQAQQLGVDVSRVRFRLLLAASLVTAAAVAVSGIVGFVGLVVPHLVRLVLGPHHRRLLVAAFFTGGLLVLVADTAARTILPGGQELPLGVVTAVLGGPCFCFILLQKKKTVGL
>NZ_CP040098.1|WP_170180160.1|701259_702030_+|ABC-transporter-ATP-binding-protein
MIRVAELRCGYPGRRVLDGVTFDVHCGEFVGVLGPNGSGKTTLMLALSGVLPVESGYIAVHGVPLERMPSRQRARAVASVAQGFDVRFPFPCADVVAMGRYPHQKRWRLQSPEDEAAVRSAMEQTDTTDLAHRPVTEVSGGERQRVMMAKGLAQAAPILLLDEPTSAMDINRKLQIFRLLRDLNLNEERTVLTVLHDINLAALFCRRMIFLKEGRIAADGPADRVLTPEILEAVYDVPVLVRDVPETGTRQVVFVP
>NZ_CP040098.1|WP_137425694.1|703063_704017_+|hypothetical-protein
MTWQAVLKRLVVPLLRLTFFIAVGLFVGNLIESLHWTHHLGRIARPLLRWGHLSDQSAVAFMAAFFSGVTANTLLMNAHQDGKLTRRELYFSNLVNAFPSYFLHLPTTFFILLPLVRAAGVYYLALTLLAALGRTFGALAVSRLVLPPPSPSAAPAADPPEPQARKDLFKDMWRKFRRRLLRVLRWTLPIYTLFFLLNHWGLFDWMELALARVFPYRIIPVEALSVVVFQVTAEFTAGAAAAGALMDAGTLTVKGTVLALLIGNVIATPVRALRHQLPYYMGIYTPKTGLSLLVVSQAVRVVSVVLVGWLFYRLAPA
>NZ_CP040098.1|WP_170180161.1|704405_704804_-|DUF3783-domain-containing-protein
MDDSPRLLVWNYTIEEKAALDEFLRQIEAPPAVSIPARRGHLPLKDIIHTDRTATDDFHSDEKVLLFYNIPQKGVYFLIQAFKNANLPRPIYAVVTEHSINWPFSELVEHLVEERNAVEAARRDAAAERSDA
>NZ_CP040098.1|WP_137423288.1|705207_706491_+|phosphomethylpyrimidine-synthase-ThiC
MNTQLDFAKAGIVTDAMKRAADGEPLTAEELRGRIAAGQAVLPKNIHHDFPEVRAIGRGLTTKVNANLGTSGECADLDMERRKLDAAVRARTDSIMDLSTGGDLTALRMFFLEHSPTMVGTVPIYALATEMVRSGEPLEKMDGDRLLRAIEDQCRQGVDYITVHCGVTLASMAKLERFERIMPCVSRGGSLHLFWMRKNHKENPLYEYFDDLLEIAHRYDVTLSLGDGFRPGAIADAIDGAQIQELMTLAELARRARNRGVQVMIEGPGHVPLEHIQSHVQLQKRLSDNAPFYVLGPLPTDIAAGYDHITAAIGGALAGAAGADFLCYVTPAEHLGLPDEDDVYQGIMAARIAAHVADLAKGLPGAAERDRRVSIARRNLDWEGVISECLDPERVRRRLQVTEDREACSMCGKLCAVKISRQATSPG
>NZ_CP040098.1|WP_137423289.1|706634_707423_+|thiazole-biosynthesis-protein
MGLDEVVITRAIVERFFEKLSGCLELDVAVVGAGPSGLVAAQRLAHAGRKVAVFERKLSVGGGMWGGGMLFNEIVVQDEAKRILDEAGVRSKPYREAGYHTADSIEAVSVLTSRAVQAGAVVFNAVTVEDVVMRPERVTGLVITWTAVEMAGLHVDPLAVRTRFVIDTTGHDTEVVKVVHRKVPGRLLTPSGNIDGEKSMWSDEAEKLTLENTREVFPGLYVAGMAANAVFGGPRMGPIFGGMLLSGDKVAGEILERLKAES
>NZ_CP040098.1|WP_137425695.1|707730_708105_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MPTLCELVDKVKRSVDPAKVGMLACHNGIVRGTSRAGDPAEYLEIDCDRDAWNRVLEEVRTRPGIAAVEAFLNTGRREIGQDVLLVVVAGDIRENVFPVLEETVNRLKREAVLKREKLAGDGRR
>NZ_CP040098.1|WP_137423290.1|708510_710190_+|methylmalonyl-CoA-mutase-family-protein
MFDERALEKIKKSKEEWEQGTLAKSLAKFPERKKVFTTISGTPVERLYTPLEVAGLDYDRDLGYPGTFPFTRGVQPTMYRGRFWTMRQYAGFGSAKETNARYRYLLEQGQTGLSVAFDLPTQAGYDSDHPLSMGEVGKVGVAIDSIDDMRVLFDQIPLDKVTTSMTINAPATVLLAMYLAIAEEQGVPFDKVGGTVQNDVLKEIICRGQYIYPPKPTMRLTVDLIEYCFKHVPRWNTISISGYHIREAGSTAAQEMAFTIADGIAYVQACMDRGLAVDSFAPRLSFFFNAFTNVLEEVAKFRAGRRTWARIMKERFGAKDPRSMMMRYHVQTGGVTLTAQQPLNNIVRVALQAYAAALGGCQSLHTNSYDEALCLPTQQAVTVALRTQQIVAEESGATDTIDPLAGCYYVEAMTDRIEKEIDDYIQKIDAMGGTLTAIEQGYIQKEIQNSAYQFQKEIESNERIYVGINKYTMKEEPPTNLLKVDMKVGEIESEKIKRLRAERDPERWKKALDRLREVSQTDENVMPAVIEAVKARATIGEICDVWREIFGEYRPKEFV

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Crispr_ID: NZ_CP040098_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_7

733730-733819

Orphan

Consensus_repeat	Method
CCGCGTTGACGCATTAGATTCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_7

>merge|NZ_CP040098|7|733730-733819|CRISPRCasFinder
CCGCGTTGACGCATTAGATTCGGAATCCGGCGCAATACGCTTTGCTATTGCGCCCTACACACCTACCCGCGTTGACGCATTGGATTCGGA

>NZ_CP040098|7|7|733730-733819|CRISPRCasFinder
CCGCGTTGACGCATTAGATTCGGA	ATCCGGCGCAATACGCTTTGCTATTGCGCCCTACACACCTAC
CCGCGTTGACGCATTGGATTCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423316.1\|745277_746627_-\|transposase	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423307.1\|729564_732585_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423300.1\|719509_719776_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423311.1\|736040_736331_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP040098.1\|WP_137423312.1\|738052_738319_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423310.1\|734251_736048_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP040098.1\|WP_137423305.1\|727224_727494_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NZ_CP040098.1\|WP_137423309.1\|734039_734234_+\|Type-I-secretion-system-protein-TolC	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423302.1\|721415_722147_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NZ_CP040098.1\|WP_137423308.1\|733138_733672_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP040098.1\|WP_137423304.1\|725583_726909_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP040098.1\|WP_170180163.1\|722590_723802_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP040098.1\|WP_170180162.1\|720647_721415_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP040098.1\|WP_137423317.1\|747241_748366_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NZ_CP040098.1\|WP_137423306.1\|728163_729405_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP040098.1\|WP_170180164.1\|746769_746916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423313.1\|740090_740498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180409.1\|723838_725587_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP040098.1\|WP_137423314.1\|740939_744011_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423315.1\|744208_744742_+\|transposase	unknown	unknown	gnl\|CDD\|224854

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_170180163.1\|722590_723802_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	3.90969e-67
NZ_CP040098.1\|WP_137423311.1\|736040_736331_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	6.09203e-10
NZ_CP040098.1\|WP_137423317.1\|747241_748366_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.74191e-28
NZ_CP040098.1\|WP_137423310.1\|734251_736048_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	2.01639e-95
NZ_CP040098.1\|WP_137423305.1\|727224_727494_+\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	4.52127e-28
NZ_CP040098.1\|WP_170180162.1\|720647_721415_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.76058e-49
NZ_CP040098.1\|WP_137423302.1\|721415_722147_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.90793e-109
NZ_CP040098.1\|WP_137423308.1\|733138_733672_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.51071e-34
NZ_CP040098.1\|WP_137423304.1\|725583_726909_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.87463e-107
NZ_CP040098.1\|WP_137423306.1\|728163_729405_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	7.75861e-44
NZ_CP040098.1\|WP_170180409.1\|723838_725587_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP040098.1\|WP_137423315.1\|744208_744742_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.19627e-33

>NZ_CP040098.1|WP_137423308.1|733138_733672_+|transposase
MPNYRRAWHPGGTYFFTVNTLRRHGCTLLTDHIDSLRAAVRTVRRAHPFAIHGWVVLPDHLHAIIELPPGDADFATRWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGLVARVADWPYSTFHALVADRVYPADWAGRMAADGVICPD
>NZ_CP040098.1|WP_137423307.1|729564_732585_+|hypothetical-protein
MALQGFDEAYYLEAKLAALQADPEYADEWANKTTDDLETFMADLGLTPETHYNLYGWKEGLNPNEYFDQNEYKLAKAKQMVDDGLYDSMQDALDAFEEAWAQDPYQHYLQYGAEEGINPSNDFDASAYLEAKLADLQADPQYAEEWAGKTVADVQAAIEASGLTPLTHYLAFGKDEGLTAPEVPVDEQVDESDLYAGEAFELTTDTDNYTGTDLNDTIEGVSSALSSARTLNPTDQIDGAGGDDTLKVDLQSSFTGFTDGYLKNVETVELTNSGTIGRDFSAKGVTGVESYVLNGDVSLTNLAATDASITLNGQQEDVEIGFAAKVTDGTTDALTLNLNGVGTAEDAATTATELKRVDLTADGIETLNLGVSGTNVVDVDAANAKAVIATGEGLLNATFDESSAVKSVDASGVAGGVSVNLNGLAAATTVKTGAGNDTITAATDDLAVNAELDGGAGTDRLVLSGDGTAQYTMGNIETVALGALTGELTFSAKNASGIETIEATSAFADTDTANFANLGNIDLNFVLGKGSAGEIIADNAGAATVNISGTSDGDLTLTKATGVTLNVAKDAVFTGEIEALKASSLEATIDGQLGDNTIDDTADDAASIYLAEATGAVFTATNTKAANIVELDAGKLIDLDITTAGDFTFREGSLASLESLTVDTDGDFSMTYDTVGPLSAIHSIELSGTGTATLLDILGDFDLEYGITVDASGLSNNDENSALRINAIMVGEGQSIELNVADVAGDVGLWGHAWVDNTEEGAQTGSITVDADGTQGDVTLGTLFAKTVTVDAAGALGEVHIGYVVDNSDFGGIYAETVNFTGSELKANTVYVTASKAATLTGGIDDDTFMLVADNDIDTTSKFTVTGGLGDDQFLIDWVATLKGKAIATITDFEEGDTTNIAAETLGVFANAETALGVLQDAGFAPADASAEDIAFLAFTEGAEPYAYDSSVFTYDGNTYAVVGDTNTQNGDTGDASFDNGEILIQLLGVQDADAINHAFGLEVTG
>NZ_CP040098.1|WP_137423306.1|728163_729405_+|acyltransferase
MSDICLSNHVPALNGVRGVAVVLVFLFHAGVPGFTGAFIGVDIFFVLSGFLITALLLQEEERRGTVSLKNFYLRRALRLLPALFLLLAVYLVYYFYAAPDAAERRRHFEDALMVLFYVSNWTRAFGWERPYSLGHCWSLSVEEQFYAVWPLVFLGLMRLRGNLRAPLIAVLFLGSWGWRVWLLEGGAGWDRVYNGFDTRADMLLAGCLLAFLVHDGRLSFWSTRRRAACLSSAAAVAVLAFLAAHGRWQTAPLYKWQYTVLALAAAVVILDVVARPEGLLSRFLSLPPLVWLGGISYGIYLWHYPLLHYVGSLGWRGWRATALTAALNLGLAVGSFYLVERRALRLKRRYQAWAPACPSPPVSLNRKKSRYISAEESRYLLTTPFRKAIKVQILYEDRGARPRRNRANGGGPS
>NZ_CP040098.1|WP_137423305.1|727224_727494_+|four-helix-bundle-protein
MKLETSKMRRAAVSVAANIVEGSARKNRSEYLQFLYISISSLAELNYYITFSNDLGYLDAKAYDELRTKGQETSRTLQGLISYIQKSKV
>NZ_CP040098.1|WP_137423304.1|725583_726909_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MNVQNDATDLPLHTDIRRVIVIAYLILFFGFGSFLTWAFVAPLDEGIVAPGVVTVESNRKTIQHRHGGIVKEILVSEGDKVKADQILVRLDDVEPKAELAAVRSEYLAALAIEARLLAERAGADTIAFPAALLERRDSPDVSEFMRRQIDLFEARKRALENEQAILKENIKGLQEYIIGLEELQKHQLKQIDLLTQEVDQLRDLATEGYYPRNKIIEMESTIAELTGQRSEELGNIARAKKSVSEYKMRVLLTEREFIKEVEAELSDVEKKVSALEEQYIAARDVVERTDIRSPVDGFVLGLKIHTIGGVIIAGQPIMDIVPVGSELIVEAKVNPQDVDKVRYGLESDLRFTSFGLKKTHVVQGEVILISADSMVDEKTGIPYYLCKVRPEAEDLKSLTEKAGEIQPGMPVTVIIRAGERTFMNYLIRPLVDRLAASFKEE
>NZ_CP040098.1|WP_170180409.1|723838_725587_+|type-I-secretion-system-permease/ATPase
MTTRGLTEKRELLRVLLSFRKAFFALGIFSAIVNILLLVPALYMLQVYDRVLMSRNQNTLLMLTILMLMMYLLVGLLEWSRSQVMIRMGNVMDNRLSGRVFAATFSKVLALGSGNSSQPFHDLTNVRQFLTSAGLFAFFDAPWTPLYIIAIFIIHPMLGVFSIACALFLLGMAVLTEVGSRSPLSEANRVYNTASSFAGVNFRNAEAIEAMGMLPNVKRHWLPRHETFLKLQQKASERASLIHAVTKFSRLSFQSLILGAGAYLAIKDIITPGGMIAASIIMGRALSPIDMAIGTWKQFVSARGSYKRLEELFNRFPERETGMSLPPPRGMVIVSHLTGGAPGTNKPILRDINFQANVGEVTAIIGPSASGKSTLAKYLVGVWQPMAGVVRLDGAEISKWSREEIGPYIGYLPQDIELLDGTVAQNIARFGEVDSEKVVQAAKIAGVHDMILQFPNGYDTQIGEGGSFLSGGQRQRIGLARAVYGDPVLIVLDEPNSNLDDAGEVALVQALYRLKSAQRTLFVITHKTSILSIVDKILLLTNGTVAAWGPRNEVLAALQRAKEQAAAAVPHPPKVVLKGVAR
>NZ_CP040098.1|WP_170180163.1|722590_723802_+|TolC-family-outer-membrane-protein
MAQENDAAFDSARYEYQAAQTMPAQGLSYLLPSVEAHYMTGKYDTDSPTSGDYSSSMRGVTLRQPLLSLPRIFEYTQHRVRADLGKAKFNAAESDLIIRTATVYFDLLAAWDQLEIVLAEKKAVAEQLEQAKRLFHAGAGTITDVHDALARYNGLLSDEIEARNNINVNVKAFKRVTGAEPKDLCRLKETIPLFVPSPDDLEGWIQIAKENNPTIRYYNYNVNYYKQERRKMISEHLPEVSFVADHHTSDTIEYYKTEEVTYTSVMAQITVPLFQGGYTRAKTKEATAKLEQAKADLNDVLTENAQKISEAFLGIKSNMAMIQALELAVESAELSLQSNEMGLKAGIRTIVDVLDAQKQLYDERMSLLKAKYEYIMNLLTLKSEGGVLTEEDLLTISDWLQTT
>NZ_CP040098.1|WP_137423302.1|721415_722147_+|ABC-transporter-ATP-binding-protein
MIKAEDLWKSFPIQRDRPGFKEFMVHAPRFFSRKKDCFWALKGVTLAVAKGECLGVIGRNGAGKSTLLSLLLGVAHPTKGTIQVSGKRTPLLELGAGFHPELTGRENIIMNGVLLGHTKAEILDRMDAIIAFSELGDFIDRPIRGYSSGMQMRLGFSVAIHTDPEILLIDEILAVGDESFQKKSAKALMELIKGGVTTVYVSHNMDAVKRICNRAVWLENGELRADGEPGGVIEAYLKCQNGM
>NZ_CP040098.1|WP_170180162.1|720647_721415_+|ABC-transporter-permease
MKRKTRQQLDLLKLLVKKEIILRYKRTYLGFLWSLLNPLLTGFVLFIAFKIFMRFEMEDYTLFLLSALFPWTWFSVSVSMSTNTLIGNISLIKKVVFPKHFLLLATVIGQLVNFIFSLPILLVLVYSYGKAPTWNWLVAMPLLIGVQFIVCYGLALMVSMVNAFFRDMEHIINVLLSLLFWMTPILYPLEAVPERYRVYLSLNPATYLIQSWRDIFFSNSINWDYIFICILTATVVFLAGSLVFKRLDRRLDEVL
>NZ_CP040098.1|WP_137423300.1|719509_719776_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MSFYTMVLRKSGAYWVAVCLENGLVGQGDTKDAAIKKLKGAVESFEEEYKKDTDIFNAPIPIKELHEFLTVEGKEPVSEEYELRLMHA
>NZ_CP040098.1|WP_137423309.1|734039_734234_+|Type-I-secretion-system-protein-TolC
MTMPRSALVSLADTPWYHVVSRCVRRAFLCGVDAHSGKNYEHRRGWIEARIMELASIFAIDVAA
>NZ_CP040098.1|WP_137423310.1|734251_736048_+|tetratricopeptide-repeat-protein
MLANAFVAGMPPVPEPPVSVFQRPPRAGRKLRIGLLSADFKQHPVAQLIMEVLEHIDRRAFELIGYDVAEPHESYWRQRILAAFDEVVAVRDLDEKSFVERLRQDKLDVLVEMQGDTADTRVWWLRHRLAPVQMSWLGFIGSIGAGMTDYIIADRHLIPADSRQHFAEKVIWLPDFSFPADTQREAPPPPPRVVEGLPDDAVVFCSFNAHYKITRATFEAWLAIVQQVEKGILWLYDQNPDSTARLRQAAKDLGLAEERLIFAKHKPHIEHLARLQLADVALDSWPYNSGATAIDTLWCGVPLLTKSDATMMSRVATGMLKTLGLPELTTTTVEEFIRTGVRLGRDAGLRRDIKERLIAARDHSPLYDPQRFARHLEKAFDMAYARFEQGLAPDHLEVPALESAPAQDEAAAARSLQVLLERADYYLQKEKLDEAEPLFREALARDPASPMARYGLGMIHGLRGQYEQALELMQQAAQAEPDNARFSRHLEIMQKKAQKNHLAELQALLKKGLTSHQKGDKDAAESCYRAILETSPRHPMALHYLGLIEVQRGDPAGLEKIRRSLEIQPHNPTFLQNFEKAKKIVPDNQAQEGFRVYE
>NZ_CP040098.1|WP_137423311.1|736040_736331_+|methyltransferase-domain-containing-protein
MSKNLLHVGCGPAHKANTRRGFNTPEWEETRFDINPAVSPDIVGDMTNMSNVDSDLFDAVFSSHNIEHLFYHEVAAALREFYRVLNKDGFVSFLNP
>NZ_CP040098.1|WP_137423312.1|738052_738319_+|hypothetical-protein
METAYQSPAGPIAPIDMIYGHRASIARGNHFMAHKCGFTMDSLVQSFKQAGFETVGGIRLQKSFELRVIASKRQRSKDEMMELAKEYL
>NZ_CP040098.1|WP_137423313.1|740090_740498_-|hypothetical-protein
MELRPGSQHSQNGFVGFLRKMLVHARKITRKRLLVGTDSAHDALETLVELRRHPNVSFIIQWNPPDVLSWRDRAFREGRLSSNRAKRRRVKTVIQELIYPAGRVIRSGRRLKLQFGRHCAAFQPFRSVYLKFCPG
>NZ_CP040098.1|WP_137423314.1|740939_744011_+|hypothetical-protein
MALQGFDEAYYLEAKLAALQADPEYADEWANKTTDDLETFMADLGLTPETHYNLYGWKEGLNPNEFFDQNEYKLAKAKQMVDDGLYDSMQDALDAFEDAWAQDPYQHYLLYGAKEGVNPSNDFDASEYLKAKLAKLQADPQYADEWAGKTVEDVKDAFEASGLTPLTHYLAYGKDEGLTAPEVPVDEQVDESDLHAGETLTLTTGTDLFTPDAEVEADRTTANNDTIEGVSSALTSARTLNPTDQIDGAGGNDTLKVDMQSSFAGFTDGYVKNVETVELTNSGTISRDFNATGVTGVQSYVLNGAVSLAALGATDAAITLNGQQDDVEIGFAAKVTDGTADALTLNLNGVGKAEDTATTAIEFNRVDLTAPGIEELNLGVAGANVVNVDAAAVKAVTATGEGSLDASFNDNDNLKTIDASGVTGKVAVELDGLTEATTVKTGAGNDTIIAAEDELAVNAELDGGAGDDRLVLSGTGTVQYTMGNIETVGLGDGSLTFSAKNASGIQTIEATSAFAYTANFVNLGNIDLNFALGKNSSGDITADNAGTATVNVSGESDTTLILTKATGAILNVAKDSIYTAEIEALKAGSLEATIDGQLGISTDDAAEIYMPEATGAVFKATSTNASFVDLHAAKLVDLDIITAGDFTFREVSLAGLESLTVNTDGDFSIGDLAAIHSVDLSGTGTATLGALGATDLDYGITVNASELTDLTIGSINVGEGQSIELNVAEVAGDVTLGTVIEETVIEKTVTQTGEEVTTITGGATVGDGATGTISVHANGTQGAVTLGDLSAKTVTVDATGALGQVTVGTISGNYGDGGIDAETVNFTGSELRPNEVYVTASDSATLTGGIADDTFMLVADNGLGDTTQFTITGGLGDDQFLIDWDATLNGKAIATITDFEEGDTTNIAAETLGVFDDAEIALGVLQDAGFAPADADAEDIAFLDLGTDATYDNSVFTYDTYDTYDNSVFTYDGNTYAVVGDWDIDGTLTRDTHDAAFQDGEILIQLLGVQDADAINHAFGLTG
>NZ_CP040098.1|WP_137423315.1|744208_744742_+|transposase
MPNYRRAWHPGGTYFFTVNTLRRHGCTLLTDHIDSLRAAVRTVRRAHPFAIHGWVVLPDHLHAVIELPPGDADFATRWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGHVARVADWPYSTFHALVAKGIYPADWGGSMAADGVRCPD
>NZ_CP040098.1|WP_137423316.1|745277_746627_-|transposase
MKPSKDAPSSKIRLRKHLNADALVRAVRREFEKIPDPRKGRPQISFADAAMSAFAMFSLKDPSLLAFEKRWSARDHNLHALYHIEKIPADSTMREILDEVSPYVFRPAFGEIFSRLQRGKALAQMTVLDGHYILALDGTGYFSSEKVFSDACLRKTSATGKTTYSLQMMGAALVHPDHKAVIPFPPEVIRREDGDTKNDCERNAAGRCIENLRTDHPHIKLIVTEDALSPNAPHIETLKRFDCRFVLGVKPGDHAFLFEKADEAIAEGRAVEFWHAAEDNPETLHYFRFINDLPLNKSHPDLRVNLLEYWQVTPKGLLRFSWVTDILIRRENAVTLMRIGRARWRIENETFNTLKNQGYHLEHNYGLGRKHLSAVFVTLMMLAFCVDQSLQLCCPLFQAVWRKLQTKRDLWERIRAMFWDFRLESIRMLYEALLYGYKRLTPIIAYNTS
>NZ_CP040098.1|WP_170180164.1|746769_746916_-|hypothetical-protein
MKNYASKIAKDEVRVLDVGSYDVNGSYRHLFDDPKYQYTAISGAPVKP
>NZ_CP040098.1|WP_137423317.1|747241_748366_+|class-I-SAM-dependent-methyltransferase
MDDFTKHTIMFDPPAKVESASSAWIMHTPFAFFMISVLRPRLLVELGVHTGHSYNAFCQAVKTLKTATHCYGIDTWKGDEHAGWYEDDIYQNLYQYQLKEYAEFSNLLRMTFDEGLAYFSDSSIDLLHIDGLHTYDAVKHDFECWLPKMSDRGVVLLHDTFVRERGFGVWRLWEEIASRYPSFNFTHGYGLGIAAVGSNVGKDFLDFLDRAGQDAFYRKLFFNLGRQIILEESVRDKDARIAALNATLSEKDARIGSLEESVREKEGRIAALNAWIEEKEGQIAALRQSTSWRITAPLRYVSERGRSTFVGAQRLWSGVRRRGGRVVALPKVVRVLRREGVGGLKAKTRAEMYSSGSADLPPSMEEATDERPSR

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Crispr_ID: NZ_CP040098_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_8

747928-748038

Orphan

Consensus_repeat	Method
CCTCGAAGAATCGGTCCGGGACAAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_8

>merge|NZ_CP040098|8|747928-748038|CRISPRCasFinder
CCTCGAAGAATCGGTCCGGGACAAGGATGCTCGGATCGCCGCGCTGAACGCTACGCTAAGTGAGAAGGACGCGCGCATAGGAAGCCTCGAAGAATCGGTCCGGGAGAAGGA

>NZ_CP040098|8|8|747928-748038|CRISPRCasFinder
CCTCGAAGAATCGGTCCGGGACAAGGA	TGCTCGGATCGCCGCGCTGAACGCTACGCTAAGTGAGAAGGACGCGCGCATAGGAAG
CCTCGAAGAATCGGTCCGGGAGAAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_170180410.1\|757002_757536_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP040098.1\|WP_137423323.1\|756425_756809_+\|DUF4277-domain-containing-protein	unknown	unknown	gnl\|CDD\|379471
NZ_CP040098.1\|WP_137423312.1\|738052_738319_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423311.1\|736040_736331_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP040098.1\|WP_170180164.1\|746769_746916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423310.1\|734251_736048_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP040098.1\|WP_137423327.1\|761009_761801_+\|chordopoxvirus-fusion-protein	unknown	unknown	gnl\|CDD\|179385
NZ_CP040098.1\|WP_137423309.1\|734039_734234_+\|Type-I-secretion-system-protein-TolC	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423325.1\|758408_759287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423321.1\|754695_754881_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NZ_CP040098.1\|WP_137423308.1\|733138_733672_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP040098.1\|WP_137423326.1\|759869_760796_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237372
NZ_CP040098.1\|WP_137423320.1\|753161_754112_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237372
NZ_CP040098.1\|WP_137423319.1\|751945_752479_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP040098.1\|WP_137423322.1\|755030_756047_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197216
NZ_CP040098.1\|WP_137423314.1\|740939_744011_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423313.1\|740090_740498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423315.1\|744208_744742_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP040098.1\|WP_137423318.1\|748362_751596_+\|glycoside-hydrolase-family-99-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|211420
NZ_CP040098.1\|WP_137423316.1\|745277_746627_-\|transposase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_170180410.1\|757002_757536_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.73376e-30
NZ_CP040098.1\|WP_137423323.1\|756425_756809_+\|DUF4277-domain-containing-protein	gnl\|CDD\|379471	pfam14104, DUF4277, Domain of unknown function (DUF4277). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 110 amino acids in length. There is a conserved NGLGF sequence motif.	6.42377e-20
NZ_CP040098.1\|WP_137423311.1\|736040_736331_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	6.09203e-10
NZ_CP040098.1\|WP_137423310.1\|734251_736048_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	2.01639e-95
NZ_CP040098.1\|WP_137423321.1\|754695_754881_+\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	9.88847e-05
NZ_CP040098.1\|WP_137423308.1\|733138_733672_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.51071e-34
NZ_CP040098.1\|WP_137423326.1\|759869_760796_+\|hypothetical-protein	gnl\|CDD\|237372	PRK13386, fliH, flagellar assembly protein H; Provisional.	3.85566e-07
NZ_CP040098.1\|WP_137423318.1\|748362_751596_+\|glycoside-hydrolase-family-99-like-domain-containing-protein	gnl\|CDD\|211420	cd11579, Glyco_tran_WbsX, Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases. Members of this domain family are found in proteins within O-antigen biosynthesis clusters in Gram negative bacteria, where they may function as glycosyl hydrolases and typically co-occur with glycosyltransferase domains. They bear resemblance to GH71 and the GH99 family of alpha-1,2-mannosidases and may share a similar cataltyic site and mechanism. The O-antigens are essential lipopolysaccharides in gram-negative bacteria's outer membrane and have been linked to pathogenicity.	7.62946e-163
NZ_CP040098.1\|WP_137423319.1\|751945_752479_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.41097e-32
NZ_CP040098.1\|WP_137423322.1\|755030_756047_+\|hypothetical-protein	gnl\|CDD\|197216	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain. Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, uncharacterized type III restriction endonuclease Res subunit, and uncharacterized DNA/RNA helicase superfamily II members. Proteins in this family are found mainly in prokaryotes. They contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain, and have been classified as members of the phospholipase D (PLD, EC 3.1.4.4) superfamily. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. BfiI forms a functionally active homodimer which has two DNA-binding surfaces located at the C-terminal domains but only one active site, located at the dimer interface between the two N-terminal catalytic domains that contain the two HKD motifs from both subunits. BfiI utilizes a single active site to cut both DNA strands, which represents a novel mechanism for the scission of double-stranded DNA. It uses a histidine residue from the HKD motif in one subunit as the nucleophile for the cleavage of the target phosphodiester bond in both of the anti-parallel DNA strands, while the symmetrically-related histidine residue from the HKD motif of the opposite subunit acts as the proton donor/acceptor during both strand-scission events.	3.10386e-14
NZ_CP040098.1\|WP_137423327.1\|761009_761801_+\|chordopoxvirus-fusion-protein	gnl\|CDD\|179385	PRK02224, PRK02224, DNA double-strand break repair Rad50 ATPase.	4.59625e-05
NZ_CP040098.1\|WP_137423320.1\|753161_754112_+\|hypothetical-protein	gnl\|CDD\|237372	PRK13386, fliH, flagellar assembly protein H; Provisional.	1.97869e-09
NZ_CP040098.1\|WP_137423315.1\|744208_744742_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.19627e-33

>NZ_CP040098.1|WP_170180164.1|746769_746916_-|hypothetical-protein
MKNYASKIAKDEVRVLDVGSYDVNGSYRHLFDDPKYQYTAISGAPVKP
>NZ_CP040098.1|WP_137423316.1|745277_746627_-|transposase
MKPSKDAPSSKIRLRKHLNADALVRAVRREFEKIPDPRKGRPQISFADAAMSAFAMFSLKDPSLLAFEKRWSARDHNLHALYHIEKIPADSTMREILDEVSPYVFRPAFGEIFSRLQRGKALAQMTVLDGHYILALDGTGYFSSEKVFSDACLRKTSATGKTTYSLQMMGAALVHPDHKAVIPFPPEVIRREDGDTKNDCERNAAGRCIENLRTDHPHIKLIVTEDALSPNAPHIETLKRFDCRFVLGVKPGDHAFLFEKADEAIAEGRAVEFWHAAEDNPETLHYFRFINDLPLNKSHPDLRVNLLEYWQVTPKGLLRFSWVTDILIRRENAVTLMRIGRARWRIENETFNTLKNQGYHLEHNYGLGRKHLSAVFVTLMMLAFCVDQSLQLCCPLFQAVWRKLQTKRDLWERIRAMFWDFRLESIRMLYEALLYGYKRLTPIIAYNTS
>NZ_CP040098.1|WP_137423315.1|744208_744742_+|transposase
MPNYRRAWHPGGTYFFTVNTLRRHGCTLLTDHIDSLRAAVRTVRRAHPFAIHGWVVLPDHLHAVIELPPGDADFATRWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGHVARVADWPYSTFHALVAKGIYPADWGGSMAADGVRCPD
>NZ_CP040098.1|WP_137423314.1|740939_744011_+|hypothetical-protein
MALQGFDEAYYLEAKLAALQADPEYADEWANKTTDDLETFMADLGLTPETHYNLYGWKEGLNPNEFFDQNEYKLAKAKQMVDDGLYDSMQDALDAFEDAWAQDPYQHYLLYGAKEGVNPSNDFDASEYLKAKLAKLQADPQYADEWAGKTVEDVKDAFEASGLTPLTHYLAYGKDEGLTAPEVPVDEQVDESDLHAGETLTLTTGTDLFTPDAEVEADRTTANNDTIEGVSSALTSARTLNPTDQIDGAGGNDTLKVDMQSSFAGFTDGYVKNVETVELTNSGTISRDFNATGVTGVQSYVLNGAVSLAALGATDAAITLNGQQDDVEIGFAAKVTDGTADALTLNLNGVGKAEDTATTAIEFNRVDLTAPGIEELNLGVAGANVVNVDAAAVKAVTATGEGSLDASFNDNDNLKTIDASGVTGKVAVELDGLTEATTVKTGAGNDTIIAAEDELAVNAELDGGAGDDRLVLSGTGTVQYTMGNIETVGLGDGSLTFSAKNASGIQTIEATSAFAYTANFVNLGNIDLNFALGKNSSGDITADNAGTATVNVSGESDTTLILTKATGAILNVAKDSIYTAEIEALKAGSLEATIDGQLGISTDDAAEIYMPEATGAVFKATSTNASFVDLHAAKLVDLDIITAGDFTFREVSLAGLESLTVNTDGDFSIGDLAAIHSVDLSGTGTATLGALGATDLDYGITVNASELTDLTIGSINVGEGQSIELNVAEVAGDVTLGTVIEETVIEKTVTQTGEEVTTITGGATVGDGATGTISVHANGTQGAVTLGDLSAKTVTVDATGALGQVTVGTISGNYGDGGIDAETVNFTGSELRPNEVYVTASDSATLTGGIADDTFMLVADNGLGDTTQFTITGGLGDDQFLIDWDATLNGKAIATITDFEEGDTTNIAAETLGVFDDAEIALGVLQDAGFAPADADAEDIAFLDLGTDATYDNSVFTYDTYDTYDNSVFTYDGNTYAVVGDWDIDGTLTRDTHDAAFQDGEILIQLLGVQDADAINHAFGLTG
>NZ_CP040098.1|WP_137423313.1|740090_740498_-|hypothetical-protein
MELRPGSQHSQNGFVGFLRKMLVHARKITRKRLLVGTDSAHDALETLVELRRHPNVSFIIQWNPPDVLSWRDRAFREGRLSSNRAKRRRVKTVIQELIYPAGRVIRSGRRLKLQFGRHCAAFQPFRSVYLKFCPG
>NZ_CP040098.1|WP_137423312.1|738052_738319_+|hypothetical-protein
METAYQSPAGPIAPIDMIYGHRASIARGNHFMAHKCGFTMDSLVQSFKQAGFETVGGIRLQKSFELRVIASKRQRSKDEMMELAKEYL
>NZ_CP040098.1|WP_137423311.1|736040_736331_+|methyltransferase-domain-containing-protein
MSKNLLHVGCGPAHKANTRRGFNTPEWEETRFDINPAVSPDIVGDMTNMSNVDSDLFDAVFSSHNIEHLFYHEVAAALREFYRVLNKDGFVSFLNP
>NZ_CP040098.1|WP_137423310.1|734251_736048_+|tetratricopeptide-repeat-protein
MLANAFVAGMPPVPEPPVSVFQRPPRAGRKLRIGLLSADFKQHPVAQLIMEVLEHIDRRAFELIGYDVAEPHESYWRQRILAAFDEVVAVRDLDEKSFVERLRQDKLDVLVEMQGDTADTRVWWLRHRLAPVQMSWLGFIGSIGAGMTDYIIADRHLIPADSRQHFAEKVIWLPDFSFPADTQREAPPPPPRVVEGLPDDAVVFCSFNAHYKITRATFEAWLAIVQQVEKGILWLYDQNPDSTARLRQAAKDLGLAEERLIFAKHKPHIEHLARLQLADVALDSWPYNSGATAIDTLWCGVPLLTKSDATMMSRVATGMLKTLGLPELTTTTVEEFIRTGVRLGRDAGLRRDIKERLIAARDHSPLYDPQRFARHLEKAFDMAYARFEQGLAPDHLEVPALESAPAQDEAAAARSLQVLLERADYYLQKEKLDEAEPLFREALARDPASPMARYGLGMIHGLRGQYEQALELMQQAAQAEPDNARFSRHLEIMQKKAQKNHLAELQALLKKGLTSHQKGDKDAAESCYRAILETSPRHPMALHYLGLIEVQRGDPAGLEKIRRSLEIQPHNPTFLQNFEKAKKIVPDNQAQEGFRVYE
>NZ_CP040098.1|WP_137423309.1|734039_734234_+|Type-I-secretion-system-protein-TolC
MTMPRSALVSLADTPWYHVVSRCVRRAFLCGVDAHSGKNYEHRRGWIEARIMELASIFAIDVAA
>NZ_CP040098.1|WP_137423308.1|733138_733672_+|transposase
MPNYRRAWHPGGTYFFTVNTLRRHGCTLLTDHIDSLRAAVRTVRRAHPFAIHGWVVLPDHLHAIIELPPGDADFATRWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGLVARVADWPYSTFHALVADRVYPADWAGRMAADGVICPD
>NZ_CP040098.1|WP_137423318.1|748362_751596_+|glycoside-hydrolase-family-99-like-domain-containing-protein
MIPYYIGPECERAAPAFEKKPNVAIHLHLFYQDMLDEFVSRLQRMPCPFDLYVSVPGDGSAAAVRSLLQNSLGAARKVIVEEVPNKGRDLGPLIVQFGRRLAEYEIIAHFHSKKSPHCSQLSGWCRHILDLLLGPPGNDGGRIARIIERLQADAKFVYPEGQTLIIKDRTGWGANHALARRLLETHTTLSIDDFPVVDFPEGSMFWARGACMKDFLRLPLDWNDFPDEPIPADGTLAHALERLMLIFASPYPGRVYRLHRGDSIPDYRCYEEQQDFSALVAKSDVKVLAYYLPQFHPTPENDRWHGEGFTEWTKVREANPLFEGHYQQHIPHPDIGCYSIESPDMLRRQADLMRKAGVFGQIFYHYWFSGKLILEKPARMLLENPEIDMPYCFCWANENWTRRWDGNEEEILLKQEYSARDAVEFIRYLIPFFRDPRYIRVEERPMLLVYRPASLPDPRLYLETWEKECAACGIAPPYVVGVLTREAKDPRDFGMEAGVERVLHDWTAGAVPEMKERLRAYQPLRGSVLDYDQVADFYSARTSPGDFTWFRSIVPIWDNTARYGSDAFLVHGSTPRKFAQWLKALVAFSRAYLPPDRRFIMVNAWNEWAEGAHLEPDSRYGYAYLNAVGRTLAGIAYGADLNPVEKLPPKLRIRLVVADEVLDALREDKQLEERFFACLARSTFFEHCDVELHPPRLIGALPAAVRADVSKPAERPVDWILQVRRVALFPPDLIEKMLQTACRVGRSVVLSNAYDRHFPLIEATENGSVDAARAFEAPLVLMPADPGPQGYKNYRLRADAHSFVAYPNTLPPKKLPRVTTIIRYHRKNDMGLLRNALYCLAAMQDCVVLPLIAAQDLDAEADAKLRDLLGQLPWPEGRDARVLHFASPEGKGDLRARMLNEALKQVSTRYAGFLDYDDLLMSHAYGWLLERLRRTGKAVAFGRVYSTSYDRDTGLFRGRKQVFTYGFSYDDFVACNHAPLHSFLLDLDQLDLRRVHYHDDQRYLEDYFLTLQLFTRENADWESLGENAYIGDYLHVVGGANTLAMASEEAHQAIVESPEYRLCEQRVDALRRSLHNT
>NZ_CP040098.1|WP_137423319.1|751945_752479_+|transposase
MPNYRRAWHPGGTYFFTVNTLRRRGCTLLTDHIDSLRAAVRTVRRVHPFRIHGWVVLPDHLHAVIELPPGDADFAARWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGHVARVADWPYSTFHALVAKGIYPADWAGSMAADGVRCPD
>NZ_CP040098.1|WP_137423320.1|753161_754112_+|hypothetical-protein
MGGYDAAMKVILAHCREAALEFFLGLHVEESEILELPQETASVRRSDFPIRVRASDGRVFIVLLEVQSRWEPNVPLRLLEYDVRYRLKTGLSVLPVVMLLTPSGNVVESFEDGGIRYRFQLISLAAMDAQKVLEWGNPCLMPFVGLMRGGSEIFQRAEEAVYGSSLGRSDKADLLTGMALLSGLVDKDLPRRLLERRRDIMMESYAYELIKKEGYEEGIRSGIEQGLQQGIEQGLHQGIEQGLHQGIEQGLQQGTLEATREHILETLEARFKDVPKDILQSLREIRDPDALKLLFRKALRADSLDEFRKALSSFFD
>NZ_CP040098.1|WP_137423321.1|754695_754881_+|DUF433-domain-containing-protein
MNLHKTLDTTVISGETGSGETVEQILEAHPRLTREAIKAELAFAAKALRADVVFPTSGISS
>NZ_CP040098.1|WP_137423322.1|755030_756047_+|hypothetical-protein
MFVTSSEYEKVVTSILEEEEELFVAVAFWGCGADSIINRRSAKTVKLICNLASGATNPDVIGALRGKQGVCLKQHDRLHAKVFVGSKRALVGSANLSSNGLNLEGAEISGWEEAGLVTTDAKEIGAIKKWFDAMWRESREIKDFELEDARRKWKERRATRVNISSSSSSSRGFSLAELSLEEISDRRIYLVIYRNQLSDEAVKEYGKYQKQQTGQPLDKSAEPPPVYEGWPELPKDAQLIDVYYGPRGGLRCFGVYTRTYDIKFKYSEGSQGHLAVCRKDNQIMGYPFGHEEELKFAKDLCPCIEEIWNSDLAVGDNLGKYIQLADVVQICRRPHSKR
>NZ_CP040098.1|WP_137423323.1|756425_756809_+|DUF4277-domain-containing-protein
MIDLSEIEFYDVYHLPIIKAYADRIDLVNTINRLVPSRMNIDPGTLVLAMALDAVSGRHPLYRIDSFYRTKDIELLLGRSIGIEKLTDDNFGRTLDHLYQANTSRCHHRNKMSGEDPGCVPYLLPLP
>NZ_CP040098.1|WP_170180410.1|757002_757536_+|transposase
MPNYRPAWHPGATYFFTVNTLRRRGCTLLTDHIDSVRAAVRTVRRAHPFRIHGWVVLPDHLHAVIELPPGGADFAARWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGHVARVAEWPYSTFHALVAKGIYPADWGGSMAADGVSCPD
>NZ_CP040098.1|WP_137423325.1|758408_759287_+|hypothetical-protein
MGGYDAAMKVILAHCREAALEFFLGLHVEESEILELPQETASVRRSDFPIRVRASDGRVFIVLLEVQSRWEPNVPLRLLEYDARYRLKTGLSVLPVVMLLTPSGNVVESFEDGGIRYRFQVISLAAMDAQKVLEWGNPCLMPFVGLMRGGSEIFQRAEEAVYGSSLGRSDKADLLTGMALLSGLVDKDLPRRLLERRRDIMMESYAYELIKKEGYEEGVRSGIEQGLQQGSLEATREHILETLEARFKDVPKDILQSLREIRDPDALKLLFRKALRADSLDEFRKALSSFFD
>NZ_CP040098.1|WP_137423326.1|759869_760796_+|hypothetical-protein
MGGYDAAMKVILAHCREAALEFFLGLHVEESEILELPQETASVRRSDFPIRVRASEGRVFIVLLEVQSRWEPNVPLRLLEYDARYRLKTGLSVLPVVMLLTPSGNVVESFEDGGIRYRFQVISLAAMDAQNVLEWGNPCLMPFVGLMRGGSEIFQRAEEAVYGSSLGRSDKADLLTGMALLSGLVDKDLPRRLLERRRDIMMESYAYELIKKEGYEEGIRSGIEQGLQQGIEQGLHQGIEQGLQQGTLEATREHILETLEARFKDVPKDILQSLRKIRDPDALKLLFRKALRADSLDEFRKALSSFFD
>NZ_CP040098.1|WP_137423327.1|761009_761801_+|chordopoxvirus-fusion-protein
MLKYLEAIEELPKEFKVPFTKVLELFREEIAETIKKSDFEELKAVVTRLAYSQEELAEAQKRTEKRLEELAEAQKRTEKRLEELAEAQKRTEKRLEELAEAQKRTEKRLEELAEAQKTTEKEIASLSRALKETRKEVGGLSHTIGYTLENEAFKALPSLLKAEFGLEVEGKLKRDFLKDSKGQEIEVNILGKARKDGQELVIVGESKSQLSRKDIDSFLRRLNFLESAIPGDKFCLFITHMARPETVVYAREKGIRVYFSYEF

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Crispr_ID: NZ_CP040098_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_9

752483-752686

Orphan

Consensus_repeat	Method
CGGCGCAATCCGCTTCGCTTATTGCGCCCTACG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040098_9

>merge|NZ_CP040098|9|752483-752686|CRISPRCasFinder
CGGCGCAATCCGCTTCGCTTATTGCGCCCTACGTGACCGGCGCAATGCGCTTCGCTTATTGCGCCCTACGTCACCGGCGCAATCCGCTTCGCTTATTGCGCCCTACGGTAGGGCGGATTAGCGGAGCGTAATCCGCCGAATCGAATGTGTGTTACGTGGTTGTTTTCCATACGGCGCAATCCGCTTCGCTTATTGCGCCCTAGA

>NZ_CP040098|9|9|752483-752686|CRISPRCasFinder
CGGCGCAATCCGCTTCGCTTATTGCGCCCTACG	TGACCGGCGCAATGCGCTTCGCTTATTGCGCCCTACGTCAC
CGGCGCAATCCGCTTCGCTTATTGCGCCCTACG	GTAGGGCGGATTAGCGGAGCGTAATCCGCCGAATCGAATGTGTGTTACGTGGTTGTTTTCCATA
CGGCGCAATCCGCTTCGCTTATTGCGCCCTAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423316.1\|745277_746627_-\|transposase	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180410.1\|757002_757536_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP040098.1\|WP_137423323.1\|756425_756809_+\|DUF4277-domain-containing-protein	unknown	unknown	gnl\|CDD\|379471
NZ_CP040098.1\|WP_137423312.1\|738052_738319_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423311.1\|736040_736331_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP040098.1\|WP_170180164.1\|746769_746916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423327.1\|761009_761801_+\|chordopoxvirus-fusion-protein	unknown	unknown	gnl\|CDD\|179385
NZ_CP040098.1\|WP_137423321.1\|754695_754881_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NZ_CP040098.1\|WP_137423325.1\|758408_759287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180166.1\|763453_764320_+\|SapC-family-protein	unknown	unknown	gnl\|CDD\|377801
NZ_CP040098.1\|WP_170180165.1\|762057_763278_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|273296
NZ_CP040098.1\|WP_137423326.1\|759869_760796_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237372
NZ_CP040098.1\|WP_137423318.1\|748362_751596_+\|glycoside-hydrolase-family-99-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|211420
NZ_CP040098.1\|WP_137423319.1\|751945_752479_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP040098.1\|WP_137423322.1\|755030_756047_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197216
NZ_CP040098.1\|WP_137423314.1\|740939_744011_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423313.1\|740090_740498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423317.1\|747241_748366_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NZ_CP040098.1\|WP_137423320.1\|753161_754112_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237372
NZ_CP040098.1\|WP_137423315.1\|744208_744742_+\|transposase	unknown	unknown	gnl\|CDD\|224854

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_170180410.1\|757002_757536_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.73376e-30
NZ_CP040098.1\|WP_137423323.1\|756425_756809_+\|DUF4277-domain-containing-protein	gnl\|CDD\|379471	pfam14104, DUF4277, Domain of unknown function (DUF4277). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 110 amino acids in length. There is a conserved NGLGF sequence motif.	6.42377e-20
NZ_CP040098.1\|WP_137423311.1\|736040_736331_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	6.09203e-10
NZ_CP040098.1\|WP_137423327.1\|761009_761801_+\|chordopoxvirus-fusion-protein	gnl\|CDD\|179385	PRK02224, PRK02224, DNA double-strand break repair Rad50 ATPase.	4.59625e-05
NZ_CP040098.1\|WP_137423321.1\|754695_754881_+\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	9.88847e-05
NZ_CP040098.1\|WP_170180166.1\|763453_764320_+\|SapC-family-protein	gnl\|CDD\|377801	pfam07277, SapC, SapC. This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.	7.30989e-79
NZ_CP040098.1\|WP_170180165.1\|762057_763278_+\|trypsin-like-serine-protease	gnl\|CDD\|273296	TIGR00845, Sodium/calcium_exchanger_1, sodium/calcium exchanger 1. The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other].	7.74984e-13
NZ_CP040098.1\|WP_137423326.1\|759869_760796_+\|hypothetical-protein	gnl\|CDD\|237372	PRK13386, fliH, flagellar assembly protein H; Provisional.	3.85566e-07
NZ_CP040098.1\|WP_137423318.1\|748362_751596_+\|glycoside-hydrolase-family-99-like-domain-containing-protein	gnl\|CDD\|211420	cd11579, Glyco_tran_WbsX, Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases. Members of this domain family are found in proteins within O-antigen biosynthesis clusters in Gram negative bacteria, where they may function as glycosyl hydrolases and typically co-occur with glycosyltransferase domains. They bear resemblance to GH71 and the GH99 family of alpha-1,2-mannosidases and may share a similar cataltyic site and mechanism. The O-antigens are essential lipopolysaccharides in gram-negative bacteria's outer membrane and have been linked to pathogenicity.	7.62946e-163
NZ_CP040098.1\|WP_137423319.1\|751945_752479_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.41097e-32
NZ_CP040098.1\|WP_137423322.1\|755030_756047_+\|hypothetical-protein	gnl\|CDD\|197216	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain. Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, uncharacterized type III restriction endonuclease Res subunit, and uncharacterized DNA/RNA helicase superfamily II members. Proteins in this family are found mainly in prokaryotes. They contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain, and have been classified as members of the phospholipase D (PLD, EC 3.1.4.4) superfamily. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. BfiI forms a functionally active homodimer which has two DNA-binding surfaces located at the C-terminal domains but only one active site, located at the dimer interface between the two N-terminal catalytic domains that contain the two HKD motifs from both subunits. BfiI utilizes a single active site to cut both DNA strands, which represents a novel mechanism for the scission of double-stranded DNA. It uses a histidine residue from the HKD motif in one subunit as the nucleophile for the cleavage of the target phosphodiester bond in both of the anti-parallel DNA strands, while the symmetrically-related histidine residue from the HKD motif of the opposite subunit acts as the proton donor/acceptor during both strand-scission events.	3.10386e-14
NZ_CP040098.1\|WP_137423315.1\|744208_744742_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.19627e-33
NZ_CP040098.1\|WP_137423320.1\|753161_754112_+\|hypothetical-protein	gnl\|CDD\|237372	PRK13386, fliH, flagellar assembly protein H; Provisional.	1.97869e-09
NZ_CP040098.1\|WP_137423317.1\|747241_748366_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.74191e-28

>NZ_CP040098.1|WP_137423319.1|751945_752479_+|transposase
MPNYRRAWHPGGTYFFTVNTLRRRGCTLLTDHIDSLRAAVRTVRRVHPFRIHGWVVLPDHLHAVIELPPGDADFAARWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGHVARVADWPYSTFHALVAKGIYPADWAGSMAADGVRCPD
>NZ_CP040098.1|WP_137423318.1|748362_751596_+|glycoside-hydrolase-family-99-like-domain-containing-protein
MIPYYIGPECERAAPAFEKKPNVAIHLHLFYQDMLDEFVSRLQRMPCPFDLYVSVPGDGSAAAVRSLLQNSLGAARKVIVEEVPNKGRDLGPLIVQFGRRLAEYEIIAHFHSKKSPHCSQLSGWCRHILDLLLGPPGNDGGRIARIIERLQADAKFVYPEGQTLIIKDRTGWGANHALARRLLETHTTLSIDDFPVVDFPEGSMFWARGACMKDFLRLPLDWNDFPDEPIPADGTLAHALERLMLIFASPYPGRVYRLHRGDSIPDYRCYEEQQDFSALVAKSDVKVLAYYLPQFHPTPENDRWHGEGFTEWTKVREANPLFEGHYQQHIPHPDIGCYSIESPDMLRRQADLMRKAGVFGQIFYHYWFSGKLILEKPARMLLENPEIDMPYCFCWANENWTRRWDGNEEEILLKQEYSARDAVEFIRYLIPFFRDPRYIRVEERPMLLVYRPASLPDPRLYLETWEKECAACGIAPPYVVGVLTREAKDPRDFGMEAGVERVLHDWTAGAVPEMKERLRAYQPLRGSVLDYDQVADFYSARTSPGDFTWFRSIVPIWDNTARYGSDAFLVHGSTPRKFAQWLKALVAFSRAYLPPDRRFIMVNAWNEWAEGAHLEPDSRYGYAYLNAVGRTLAGIAYGADLNPVEKLPPKLRIRLVVADEVLDALREDKQLEERFFACLARSTFFEHCDVELHPPRLIGALPAAVRADVSKPAERPVDWILQVRRVALFPPDLIEKMLQTACRVGRSVVLSNAYDRHFPLIEATENGSVDAARAFEAPLVLMPADPGPQGYKNYRLRADAHSFVAYPNTLPPKKLPRVTTIIRYHRKNDMGLLRNALYCLAAMQDCVVLPLIAAQDLDAEADAKLRDLLGQLPWPEGRDARVLHFASPEGKGDLRARMLNEALKQVSTRYAGFLDYDDLLMSHAYGWLLERLRRTGKAVAFGRVYSTSYDRDTGLFRGRKQVFTYGFSYDDFVACNHAPLHSFLLDLDQLDLRRVHYHDDQRYLEDYFLTLQLFTRENADWESLGENAYIGDYLHVVGGANTLAMASEEAHQAIVESPEYRLCEQRVDALRRSLHNT
>NZ_CP040098.1|WP_137423317.1|747241_748366_+|class-I-SAM-dependent-methyltransferase
MDDFTKHTIMFDPPAKVESASSAWIMHTPFAFFMISVLRPRLLVELGVHTGHSYNAFCQAVKTLKTATHCYGIDTWKGDEHAGWYEDDIYQNLYQYQLKEYAEFSNLLRMTFDEGLAYFSDSSIDLLHIDGLHTYDAVKHDFECWLPKMSDRGVVLLHDTFVRERGFGVWRLWEEIASRYPSFNFTHGYGLGIAAVGSNVGKDFLDFLDRAGQDAFYRKLFFNLGRQIILEESVRDKDARIAALNATLSEKDARIGSLEESVREKEGRIAALNAWIEEKEGQIAALRQSTSWRITAPLRYVSERGRSTFVGAQRLWSGVRRRGGRVVALPKVVRVLRREGVGGLKAKTRAEMYSSGSADLPPSMEEATDERPSR
>NZ_CP040098.1|WP_170180164.1|746769_746916_-|hypothetical-protein
MKNYASKIAKDEVRVLDVGSYDVNGSYRHLFDDPKYQYTAISGAPVKP
>NZ_CP040098.1|WP_137423316.1|745277_746627_-|transposase
MKPSKDAPSSKIRLRKHLNADALVRAVRREFEKIPDPRKGRPQISFADAAMSAFAMFSLKDPSLLAFEKRWSARDHNLHALYHIEKIPADSTMREILDEVSPYVFRPAFGEIFSRLQRGKALAQMTVLDGHYILALDGTGYFSSEKVFSDACLRKTSATGKTTYSLQMMGAALVHPDHKAVIPFPPEVIRREDGDTKNDCERNAAGRCIENLRTDHPHIKLIVTEDALSPNAPHIETLKRFDCRFVLGVKPGDHAFLFEKADEAIAEGRAVEFWHAAEDNPETLHYFRFINDLPLNKSHPDLRVNLLEYWQVTPKGLLRFSWVTDILIRRENAVTLMRIGRARWRIENETFNTLKNQGYHLEHNYGLGRKHLSAVFVTLMMLAFCVDQSLQLCCPLFQAVWRKLQTKRDLWERIRAMFWDFRLESIRMLYEALLYGYKRLTPIIAYNTS
>NZ_CP040098.1|WP_137423315.1|744208_744742_+|transposase
MPNYRRAWHPGGTYFFTVNTLRRHGCTLLTDHIDSLRAAVRTVRRAHPFAIHGWVVLPDHLHAVIELPPGDADFATRWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGHVARVADWPYSTFHALVAKGIYPADWGGSMAADGVRCPD
>NZ_CP040098.1|WP_137423314.1|740939_744011_+|hypothetical-protein
MALQGFDEAYYLEAKLAALQADPEYADEWANKTTDDLETFMADLGLTPETHYNLYGWKEGLNPNEFFDQNEYKLAKAKQMVDDGLYDSMQDALDAFEDAWAQDPYQHYLLYGAKEGVNPSNDFDASEYLKAKLAKLQADPQYADEWAGKTVEDVKDAFEASGLTPLTHYLAYGKDEGLTAPEVPVDEQVDESDLHAGETLTLTTGTDLFTPDAEVEADRTTANNDTIEGVSSALTSARTLNPTDQIDGAGGNDTLKVDMQSSFAGFTDGYVKNVETVELTNSGTISRDFNATGVTGVQSYVLNGAVSLAALGATDAAITLNGQQDDVEIGFAAKVTDGTADALTLNLNGVGKAEDTATTAIEFNRVDLTAPGIEELNLGVAGANVVNVDAAAVKAVTATGEGSLDASFNDNDNLKTIDASGVTGKVAVELDGLTEATTVKTGAGNDTIIAAEDELAVNAELDGGAGDDRLVLSGTGTVQYTMGNIETVGLGDGSLTFSAKNASGIQTIEATSAFAYTANFVNLGNIDLNFALGKNSSGDITADNAGTATVNVSGESDTTLILTKATGAILNVAKDSIYTAEIEALKAGSLEATIDGQLGISTDDAAEIYMPEATGAVFKATSTNASFVDLHAAKLVDLDIITAGDFTFREVSLAGLESLTVNTDGDFSIGDLAAIHSVDLSGTGTATLGALGATDLDYGITVNASELTDLTIGSINVGEGQSIELNVAEVAGDVTLGTVIEETVIEKTVTQTGEEVTTITGGATVGDGATGTISVHANGTQGAVTLGDLSAKTVTVDATGALGQVTVGTISGNYGDGGIDAETVNFTGSELRPNEVYVTASDSATLTGGIADDTFMLVADNGLGDTTQFTITGGLGDDQFLIDWDATLNGKAIATITDFEEGDTTNIAAETLGVFDDAEIALGVLQDAGFAPADADAEDIAFLDLGTDATYDNSVFTYDTYDTYDNSVFTYDGNTYAVVGDWDIDGTLTRDTHDAAFQDGEILIQLLGVQDADAINHAFGLTG
>NZ_CP040098.1|WP_137423313.1|740090_740498_-|hypothetical-protein
MELRPGSQHSQNGFVGFLRKMLVHARKITRKRLLVGTDSAHDALETLVELRRHPNVSFIIQWNPPDVLSWRDRAFREGRLSSNRAKRRRVKTVIQELIYPAGRVIRSGRRLKLQFGRHCAAFQPFRSVYLKFCPG
>NZ_CP040098.1|WP_137423312.1|738052_738319_+|hypothetical-protein
METAYQSPAGPIAPIDMIYGHRASIARGNHFMAHKCGFTMDSLVQSFKQAGFETVGGIRLQKSFELRVIASKRQRSKDEMMELAKEYL
>NZ_CP040098.1|WP_137423311.1|736040_736331_+|methyltransferase-domain-containing-protein
MSKNLLHVGCGPAHKANTRRGFNTPEWEETRFDINPAVSPDIVGDMTNMSNVDSDLFDAVFSSHNIEHLFYHEVAAALREFYRVLNKDGFVSFLNP
>NZ_CP040098.1|WP_137423320.1|753161_754112_+|hypothetical-protein
MGGYDAAMKVILAHCREAALEFFLGLHVEESEILELPQETASVRRSDFPIRVRASDGRVFIVLLEVQSRWEPNVPLRLLEYDVRYRLKTGLSVLPVVMLLTPSGNVVESFEDGGIRYRFQLISLAAMDAQKVLEWGNPCLMPFVGLMRGGSEIFQRAEEAVYGSSLGRSDKADLLTGMALLSGLVDKDLPRRLLERRRDIMMESYAYELIKKEGYEEGIRSGIEQGLQQGIEQGLHQGIEQGLHQGIEQGLQQGTLEATREHILETLEARFKDVPKDILQSLREIRDPDALKLLFRKALRADSLDEFRKALSSFFD
>NZ_CP040098.1|WP_137423321.1|754695_754881_+|DUF433-domain-containing-protein
MNLHKTLDTTVISGETGSGETVEQILEAHPRLTREAIKAELAFAAKALRADVVFPTSGISS
>NZ_CP040098.1|WP_137423322.1|755030_756047_+|hypothetical-protein
MFVTSSEYEKVVTSILEEEEELFVAVAFWGCGADSIINRRSAKTVKLICNLASGATNPDVIGALRGKQGVCLKQHDRLHAKVFVGSKRALVGSANLSSNGLNLEGAEISGWEEAGLVTTDAKEIGAIKKWFDAMWRESREIKDFELEDARRKWKERRATRVNISSSSSSSRGFSLAELSLEEISDRRIYLVIYRNQLSDEAVKEYGKYQKQQTGQPLDKSAEPPPVYEGWPELPKDAQLIDVYYGPRGGLRCFGVYTRTYDIKFKYSEGSQGHLAVCRKDNQIMGYPFGHEEELKFAKDLCPCIEEIWNSDLAVGDNLGKYIQLADVVQICRRPHSKR
>NZ_CP040098.1|WP_137423323.1|756425_756809_+|DUF4277-domain-containing-protein
MIDLSEIEFYDVYHLPIIKAYADRIDLVNTINRLVPSRMNIDPGTLVLAMALDAVSGRHPLYRIDSFYRTKDIELLLGRSIGIEKLTDDNFGRTLDHLYQANTSRCHHRNKMSGEDPGCVPYLLPLP
>NZ_CP040098.1|WP_170180410.1|757002_757536_+|transposase
MPNYRPAWHPGATYFFTVNTLRRRGCTLLTDHIDSVRAAVRTVRRAHPFRIHGWVVLPDHLHAVIELPPGGADFAARWRLIKAGFSKRLPPIERRSAVRVARGERGIWQRRFWEHLIRDERDFAAHMDYVHFNPVKHGHVARVAEWPYSTFHALVAKGIYPADWGGSMAADGVSCPD
>NZ_CP040098.1|WP_137423325.1|758408_759287_+|hypothetical-protein
MGGYDAAMKVILAHCREAALEFFLGLHVEESEILELPQETASVRRSDFPIRVRASDGRVFIVLLEVQSRWEPNVPLRLLEYDARYRLKTGLSVLPVVMLLTPSGNVVESFEDGGIRYRFQVISLAAMDAQKVLEWGNPCLMPFVGLMRGGSEIFQRAEEAVYGSSLGRSDKADLLTGMALLSGLVDKDLPRRLLERRRDIMMESYAYELIKKEGYEEGVRSGIEQGLQQGSLEATREHILETLEARFKDVPKDILQSLREIRDPDALKLLFRKALRADSLDEFRKALSSFFD
>NZ_CP040098.1|WP_137423326.1|759869_760796_+|hypothetical-protein
MGGYDAAMKVILAHCREAALEFFLGLHVEESEILELPQETASVRRSDFPIRVRASEGRVFIVLLEVQSRWEPNVPLRLLEYDARYRLKTGLSVLPVVMLLTPSGNVVESFEDGGIRYRFQVISLAAMDAQNVLEWGNPCLMPFVGLMRGGSEIFQRAEEAVYGSSLGRSDKADLLTGMALLSGLVDKDLPRRLLERRRDIMMESYAYELIKKEGYEEGIRSGIEQGLQQGIEQGLHQGIEQGLQQGTLEATREHILETLEARFKDVPKDILQSLRKIRDPDALKLLFRKALRADSLDEFRKALSSFFD
>NZ_CP040098.1|WP_137423327.1|761009_761801_+|chordopoxvirus-fusion-protein
MLKYLEAIEELPKEFKVPFTKVLELFREEIAETIKKSDFEELKAVVTRLAYSQEELAEAQKRTEKRLEELAEAQKRTEKRLEELAEAQKRTEKRLEELAEAQKRTEKRLEELAEAQKTTEKEIASLSRALKETRKEVGGLSHTIGYTLENEAFKALPSLLKAEFGLEVEGKLKRDFLKDSKGQEIEVNILGKARKDGQELVIVGESKSQLSRKDIDSFLRRLNFLESAIPGDKFCLFITHMARPETVVYAREKGIRVYFSYEF
>NZ_CP040098.1|WP_170180165.1|762057_763278_+|trypsin-like-serine-protease
MADALLPTITTTGYYTDARYRAYPGDGYDGVVRVSFGGYYGTGTLLYDGHAVLTSAHLFEGRTGTAYVTFQTPSGTQTVSTTKILQHPGYDAENSNNDLAIVWLPEAAPVDADRYEIYRESDEIGQVFTFSGYGGTGTGITGEIIPGGLIRHKAANQFDADAAELKDHLGPYMAWTPWPGTQLIADFDSGTSSNDALGQLIHRYDRGLGLYEGLIAQGDSGSPAFLQNKVAGVANYVATLSGGSIDPDVDDFINSSFGEIAACQRVSAHQQWIDQSLRAEYPNAPTRPEEVQKAVVEGDSGTTYAYFLLQFIGVRSDPNEILSVDYATRDGSALSGSDYLAVSGTLNLYPDENQAVMPVEIIGDSTPEPSESFYLDVFNPVGGSFGDGVVQLTAERTILNDDLWPA
>NZ_CP040098.1|WP_170180166.1|763453_764320_+|SapC-family-protein
MTNTGERRLDVTPSPQLTAITAERFSGKAWRRYNGYAFAAKENLIALVAAELANAVPAMPVGFVQTGEGFQLVAVTGLEPAVNLFVAPDGRWLSSYVPATLRGYPFRLVKVEGREESLLCIDEASGLVVETGLGEPFFDETGQPAQALKQVLEFLSQVERSRMATEAAVDALAAAGLIQPWPLNLKRGEQQVAVTGLYRIDEAALHALDDKAFLGLRASGALPVAYAQLMSINQLTVLERLAQLQAKLQAQASRVVQKLANLEGIGLSQDDGTLKFDSSLTVAKKVYQ

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Crispr_ID: NZ_CP040098_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_10

806851-806977

Orphan

Consensus_repeat	Method
TTCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_10

>merge|NZ_CP040098|10|806851-806977|CRISPRCasFinder
TTCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGGAATGTAACTGATTGACATACGTTAATTTTCTCACCCTCACCCCAACCCTCTCCTTCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGG

>NZ_CP040098|10|10|806851-806977|CRISPRCasFinder
TTCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGG	AATGTAACTGATTGACATACGTTAATTTTCTCACCCTCACCCCAACCCTCTCC
TTCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423372.1\|812391_813705_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|223531
NZ_CP040098.1\|WP_137423366.1\|806337_806748_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423374.1\|815347_815980_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423375.1\|816312_817446_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224164
NZ_CP040098.1\|WP_137423364.1\|804081_804372_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NZ_CP040098.1\|WP_170180174.1\|811541_811976_+\|HAD-IIIA-family-hydrolase	unknown	unknown	gnl\|CDD\|319806
NZ_CP040098.1\|WP_137423369.1\|810690_811422_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP040098.1\|WP_137423376.1\|817532_818264_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP040098.1\|WP_137423365.1\|805016_805244_-\|DUF2283-domain-containing-protein	unknown	unknown	gnl\|CDD\|378367
NZ_CP040098.1\|WP_137423367.1\|807092_809054_-\|propionyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|341271
NZ_CP040098.1\|WP_137423371.1\|811987_812392_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423363.1\|803835_804054_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423359.1\|802345_802546_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP040098.1\|WP_137423358.1\|802133_802349_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP040098.1\|WP_137423368.1\|809473_810604_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224164
NZ_CP040098.1\|WP_137423362.1\|803560_803839_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423373.1\|813701_815222_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423361.1\|803213_803483_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|366857
NZ_CP040098.1\|WP_137425700.1\|804368_804572_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_CP040098.1\|WP_137423360.1\|802682_802949_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137423372.1\|812391_813705_+\|ParA-family-protein	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	6.28486e-08
NZ_CP040098.1\|WP_137423375.1\|816312_817446_-\|radical-SAM-protein	gnl\|CDD\|224164	COG1243, ELP3, Histone acetyltransferase [Transcription / Chromatin structure and dynamics].	9.93845e-48
NZ_CP040098.1\|WP_137423368.1\|809473_810604_-\|radical-SAM-protein	gnl\|CDD\|224164	COG1243, ELP3, Histone acetyltransferase [Transcription / Chromatin structure and dynamics].	1.165e-48
NZ_CP040098.1\|WP_170180174.1\|811541_811976_+\|HAD-IIIA-family-hydrolase	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.08134e-46
NZ_CP040098.1\|WP_137423376.1\|817532_818264_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	7.06169e-112
NZ_CP040098.1\|WP_137423365.1\|805016_805244_-\|DUF2283-domain-containing-protein	gnl\|CDD\|378367	pfam10049, DUF2283, Protein of unknown function (DUF2283). Members of this family of hypothetical bacterial proteins have no known function.	2.77008e-11
NZ_CP040098.1\|WP_137423367.1\|807092_809054_-\|propionyl-CoA-synthetase	gnl\|CDD\|341271	cd05967, PrpE, Propionyl-CoA synthetase (PrpE). EC 6.2.1.17: propanoate:CoA ligase (AMP-forming) or propionate#CoA ligase (PrpE) catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of Salmonella enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency.	0
NZ_CP040098.1\|WP_137423369.1\|810690_811422_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	3.50446e-112
NZ_CP040098.1\|WP_137423359.1\|802345_802546_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.83815e-08
NZ_CP040098.1\|WP_137423358.1\|802133_802349_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	2.3724e-10
NZ_CP040098.1\|WP_137423364.1\|804081_804372_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	2.86484e-12
NZ_CP040098.1\|WP_137423361.1\|803213_803483_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|366857	pfam01909, NTP_transf_2, Nucleotidyltransferase domain. Members of this family belong to a large family of nucleotidyltransferases. This family includes kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase in-activates antibiotics by catalyzing the addition of a nucleotidyl group onto the drug.	1.03841e-07
NZ_CP040098.1\|WP_137425700.1\|804368_804572_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	8.4908e-18

>NZ_CP040098.1|WP_137423366.1|806337_806748_+|hypothetical-protein
MARLNFIVIMILLLLGQCVWAEEVPYTLEDRDRLIRVEAKIEDIDKRFEQIDKRFEQVERRIERLENVMIWGFGLLFTTMIGLLGFVLWDRRTALSPAIRKNKELEERNDKIVKALKEYAYKEPKLAEILRNVGLM
>NZ_CP040098.1|WP_137423365.1|805016_805244_-|DUF2283-domain-containing-protein
MKVHYDEEVDALYLSLGEQKPNGVIEIAEGINIDTTADGKLTGIEILKASKKINIDTILSYTLELDKDILKKEIA
>NZ_CP040098.1|WP_137425700.1|804368_804572_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKIKIYLEPSDDGGYTVIVPSLPGCISEGDTKEEAVRNIKEAIELYLEPVEDDIVAIPDAESLELAI
>NZ_CP040098.1|WP_137423364.1|804081_804372_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MSKIPSLNYEKVIKGLQRDGWVIVRQRGSHIRLQKHVGNETFKIIVPAHKPIKRSTLSHILKQARMTVDDFLEKLCSALHWMEIPLRSIRTTELGR
>NZ_CP040098.1|WP_137423363.1|803835_804054_-|hypothetical-protein
MTQLLEKAFEEASKLSELEQNALARWLIEEIISDKKWEKAFAESEDVLDKLADEALAEHAQGKTKTLDIDEL
>NZ_CP040098.1|WP_137423362.1|803560_803839_-|hypothetical-protein
MISRTAERFRKLLADLPKETQRQAREAYAQFKKDPYYPGLHFKRVHSKRPIYAVRISREYRALGIQQDSEIIWFWVGSHTDYDNILKQLRHA
>NZ_CP040098.1|WP_137423361.1|803213_803483_-|nucleotidyltransferase-domain-containing-protein
MNREELLEQIKEAVHQAEPDAEIILYGCRSRGDALSESDWDFLILVDGPVSDERTDRIRHRLYELEWETGEVISSIVRNHDEWNSDIRI
>NZ_CP040098.1|WP_137423360.1|802682_802949_-|hypothetical-protein
MKDIDSPVDWQHGKGETTEIGYVNRHGQKCCDYYGVPGTDRGQYAYKIECTICGYVYGANASDIHERRCPESQGGVPGIKYWRIIKTR
>NZ_CP040098.1|WP_137423359.1|802345_802546_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MNIEIEREEDGRWIAEIPDLPGVMIYGQSREEAISKVKALALRVLADRLEHGEAIPELHEVFAMPA
>NZ_CP040098.1|WP_137423358.1|802133_802349_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MSQWPSAKARLVLAALLRIGWTIKRQSETSHRILSRPGWPDYVFAFHDSEEIGPRMLARIAKRTGLTLEDL
>NZ_CP040098.1|WP_137423367.1|807092_809054_-|propionyl-CoA-synthetase
MRLQCFSRPTQAKRRVTMSDPYVEAWERSIKDPNGFWGDAAEAIHWYKRWDKVLDDSNPPFYRWFVGGELNTCYNALDRHVEGGRADQAAMIYDSPVTDTIKTYTYRQLRDEVALFAGALADRGVVKGDRVLIYMPMIPEAVIAMLACARIGAIHSVVFGGFASNELATRINDAKPKVIVSASCGIEVKRVIPYKPLLDGAIRMSNTDAQPQSCIIYQRPMETAPLTPGRDVDWKEVVAAAKPADCVPVAATDPLYILYTSGTTGLPKGVVRDNGGHAVALNWSMKAIYNVDAGDVYWAASDVGWVVGHSYIVYAPLLRGCTTILFEGKPVGTPDAGVFWRVIGQHKVRTMFTAPTALRAIKREDPRAELMQKYDLSNFYALFLAGERLDPDTLKWAQKALKVPVIDHWWQTETGWAICANCLGLHAYPVKEGSATKPAPGWNLQVVDPNNQPLPAGQIGALVVKLPLPPGALVTLYNNDQGLIKSYLEEFPGYYKTADAGFIDEDGYVFVMGRTDDIINVAGHRLSTGAMEEVLSDHPDVAECAVLGVEDDLKGQVPVGFVVLKAGVTRPHEEIVNELIQMVRDRIGPVASFKKATVVKRLPKTRSGKILRGTIQKIADNKDYKIPATIDDPAILDEIKAALVTIGYAQGRR
>NZ_CP040098.1|WP_137423368.1|809473_810604_-|radical-SAM-protein
MWDRQNRPRIYPVFLPHAGCPYRCVYCNQYAVTGSGGREGSDLLRGRAAIEDRAERSRRSGIPGEIAFYGGTFTALPEALLDGLLEAAAAGVRDGVFTGIRFSTRPDAVSEETVRRLQAFPIRTVELGAQSLSDAVLFASRRGYRAAAVEAAARRVRAAGWALGIQLMVGLPGETPSRFQGTISKAVALRPDFVRLYPALVLRDTGLARWFESGRYRPLSLDQAVERCAFAFDRFLKNGIRVARMGLHADPELDRPGTILAGPCHPAFGYLVRVRWWRNRVDAVMEGRAKTPASPEGGDAVALPDGSAPIRSRNQRSAVLYVPSHLLSEALGPRRENVTYWTRKWGWDGLDVRPEASAAVEGRNGRLCVGDEEFHL
>NZ_CP040098.1|WP_137423369.1|810690_811422_-|ribonuclease-III
MDHARDLQAVQNAVGYRFRDPALLRQALTHRSFVHEHQDSRPSDNETLEFLGDAVLGLAVSHLLIERFPERLEGDLSRMRSAIVNERQLAQTASELGLGRRLLLGKGEELTGGREKASLLADSLEALLGAVYLDGGFDAVFQLVSRLFSRYLDAEHLDDPLSRLDKDYKTQLQEWTQARFKTVPTYEMESEEGPDHEKTFTMRVSLGEVLLGRGVGKSKKDAQQEAARKALEVLKERVGEAMS
>NZ_CP040098.1|WP_170180174.1|811541_811976_+|HAD-IIIA-family-hydrolase
MIICSGRPAAAFTSFVFLDRDGILNVDRSDHVKHWSEFQFYPDALEALRRLRRRKIEVILVSNQSALNRGLTQWNDFLDIHRNMLQRIRAEGGDLLAAFYCPHRPDEACDCRKPRPGMLRAAADLYGVPLHATTMMGDKVTVGH
>NZ_CP040098.1|WP_137423371.1|811987_812392_+|hypothetical-protein
MGTKTVNRDDFRAAARRWYRDGCHLLQDDRYPGASHAFGLAAECALKHSMERLPGAQRELPRRHLPELLNDARLWLSGRRHRGLTQLLGWRDYMHGWQMDNRYWADDCFDAQGCRLFRDHARRTLQAAGVEVAT
>NZ_CP040098.1|WP_137423372.1|812391_813705_+|ParA-family-protein
MHADVRFDTALPRLVQAVREAVPDVDFRDIRVVRDMQGRLFLVVPNDWDTGTISDLRQRLSAALGPYSPGEEAGAARFNDVLAGKELLAERALLVWVDDAPVHLIERRAVGQDWALPPEPASAHPPRFVFYSLKGGVGRSTALMLWGRHLAERGQSVLLVDLDLEAPGLGAHLLPSDGRPLFGTLDWLVEDLVGNADRTPAADLIADSPLSHAPGLWVAPALGAEAARHPGNVLAKLARAYLESDEGAGFASRLSRLICALERHLSPDVVLIDSRAGLHESVAANLLHLDAEVLLFAVDLPPTWEGYRYLFGHLRQLAPDMVGGGGFDAWRARLRMIQARAAGTEAEKRRFSSSAFGVWVDTLYDEAPPDQGDAFSFDEHDEAAPHWPLTILRSERFEAFHPLEQLADVGERAIGEVFGELFAGLDERLLALKEDSE
>NZ_CP040098.1|WP_137423373.1|813701_815222_+|hypothetical-protein
MSQREFPLAELHCAFEDIPDEVAHHQTEPPPLREVYVVPGHEKALNPETPVVVGDRGTGKSFWSAALNGEETRLLIGRELRKLRMDTVRVSWGFSAATDNRWHPSRRVLRSLRGQGFEAEDIWRAVLLHHLAGACGLGGWPAGADWAERVRRVAEAPELEERLLAEAHDRLQRLGKRHLFVFDALDRLGDDWRAIRDLLQGLLRVCLDLRAYRAIRTKLFLRPDMWEDQAVSQFPDASKLHHGRVLLEWRRVDLYGLLWHWLGNHPGAGAAFRDWCKDAHGHEFEPIRIGSETVYAVPAALRTDQDEQAKLLEDIASRYMGRDRRRGRTYTWLPTHLADAKGQVSPRSFLLALKHAHTATQDRLAGGTPLLHYEGIKQGVQEASRIRLKELQEDYPWIQQVLAPLQGMTVPCTAKELRQRWHAEGVVQAISSPPLDNAELKADDRAYLPPHALEYAPPGRSPEDALIQAVIEIGVLSRMADGRLNMPDLFRVAAGIGRRGGVRAIR
>NZ_CP040098.1|WP_137423374.1|815347_815980_+|hypothetical-protein
MSTDGGMESPTPETSSQRQRRKHGYVCTICGRRWRRSWLLQWQRGFRGSEYGTLAVSLRFLCRELSSADLSDKTVDAWRKPAAQIQRDVADFCREAKRLLLEEKVAGQNANLSKLQSINPTVDALRARLFGSGISHGGFSRRIFDTLDTNLSQGRCLTYIGTEGNGLMGIEAGASATGVFPSWSLGTRVDGGAWEQGQKIPLSLDGRGLG
>NZ_CP040098.1|WP_137423375.1|816312_817446_-|radical-SAM-protein
MWDRQNRPRIYPAFLPHAGCPYRCVYCNQYAVTGGSGGREGSDLLRGRAAIEDRAERSRRSGIPGEIAFYGGTFTALPEALLDGLLEAAAAGVRDGVFTGIRFSTRPDAVSEDTVRRLQAFPIRTVELGAQSLSDAVLLASRRGYRAAAVEAAARRVRAAGWALGIQLMVGLPGETPSRFQGTISKAVALRPDFVRLYPALVLRDTGLARWFESGRYRPLSLDQAVERCAFAFDRFLKNGIRVARMGLHADPELDRPGTILAGPCHPAFGYLVRVRWWRNRVDAVMEGRAKTPAPPEGGDAVALPDGSAPIRSRNQRSAVLHVPSNLLSEALGPRRENVTYWTRKWGWDGLDVRPEASAAVEGRNGRLCVGDEEFHL
>NZ_CP040098.1|WP_137423376.1|817532_818264_-|ribonuclease-III
MDHARDLQAVQNAVGYRFRDPALLRQALTHRSFVHEHQDSRPSDNETLEFLGDAVLGLAVSHLLIERFPERLEGDLSRMRSAIVNERQLAQTASELGLGRRLLLGKGEELTGGREKASLLADSLEALLGAVYLDGGFDAVFQLVWRLFSRYLDAEHLDDPLSRLDKDYKTQLQEWTQARFKTVPTYEMESEEGPDHEKTFTMRVSLGEVLLGRGVGKSKKDAQQEAARKALEVLKERVGEAMS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP040098_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_11

848129-848236

Orphan

Consensus_repeat	Method
GTGGTGCGCAAAGACTGTTTCGAAACGTTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_11

>merge|NZ_CP040098|11|848129-848236|CRISPRCasFinder
GTGGTGCGCAAAGACTGTTTCGAAACGTTTTGAGAGCTTCCAAGAACCTGGGAGCGCGGGCGTCCCGCCCGCAGTGGTGGTGCGCAAAGACTGTTTCGAAACATTTTG

>NZ_CP040098|11|11|848129-848236|CRISPRCasFinder
GTGGTGCGCAAAGACTGTTTCGAAACGTTTTG	AGAGCTTCCAAGAACCTGGGAGCGCGGGCGTCCCGCCCGCAGTG
GTGGTGCGCAAAGACTGTTTCGAAACATTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425704.1\|848561_849575_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182814
NZ_CP040098.1\|WP_137423405.1\|854878_855166_+\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|259857
NZ_CP040098.1\|WP_137423395.1\|837983_838841_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP040098.1\|WP_170180177.1\|849583_850495_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP040098.1\|WP_137423393.1\|836183_837011_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP040098.1\|WP_137423396.1\|838815_840051_-\|isocitrate-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|180792
NZ_CP040098.1\|WP_170180176.1\|840064_840952_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NZ_CP040098.1\|WP_137423398.1\|841440_842181_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133010
NZ_CP040098.1\|WP_137423406.1\|855220_856579_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|234667
NZ_CP040098.1\|WP_170180179.1\|852753_853953_-\|DUF2333-family-protein	unknown	unknown	gnl\|CDD\|378387
NZ_CP040098.1\|WP_137425703.1\|835519_836098_-\|translation-elongation-factor-Ts	unknown	unknown	gnl\|CDD\|183447
NZ_CP040098.1\|WP_137423400.1\|843433_846676_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP040098.1\|WP_137423394.1\|837171_838014_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NZ_CP040098.1\|WP_137425705.1\|859462_860086_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180178.1\|850494_852336_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320704
NZ_CP040098.1\|WP_137423392.1\|834779_835520_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP040098.1\|WP_137423404.1\|853975_854353_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|376501
NZ_CP040098.1\|WP_137423408.1\|858478_859438_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_CP040098.1\|WP_137423399.1\|842289_843423_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP040098.1\|WP_137423407.1\|857273_857885_+\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|129396

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425704.1\|848561_849575_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	gnl\|CDD\|182814	PRK10892, PRK10892, arabinose-5-phosphate isomerase KdsD.	1.22496e-110
NZ_CP040098.1\|WP_137423405.1\|854878_855166_+\|integration-host-factor-subunit-alpha	gnl\|CDD\|259857	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	1.88349e-45
NZ_CP040098.1\|WP_137423395.1\|837983_838841_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	4.42904e-53
NZ_CP040098.1\|WP_170180177.1\|849583_850495_+\|hypothetical-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	3.94904e-07
NZ_CP040098.1\|WP_137423393.1\|836183_837011_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	8.93074e-177
NZ_CP040098.1\|WP_137423396.1\|838815_840051_-\|isocitrate-dehydrogenase-(NADP(+))	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP040098.1\|WP_170180176.1\|840064_840952_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	1.95764e-86
NZ_CP040098.1\|WP_137423398.1\|841440_842181_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|133010	cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.	6.12496e-139
NZ_CP040098.1\|WP_137423406.1\|855220_856579_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|234667	PRK00149, dnaA, chromosomal replication initiator protein DnaA.	1.43321e-149
NZ_CP040098.1\|WP_170180179.1\|852753_853953_-\|DUF2333-family-protein	gnl\|CDD\|378387	pfam10095, DUF2333, Uncharacterized protein conserved in bacteria (DUF2333). Members of this family of hypothetical bacterial proteins have no known function.	4.33045e-21
NZ_CP040098.1\|WP_137425703.1\|835519_836098_-\|translation-elongation-factor-Ts	gnl\|CDD\|183447	PRK12332, tsf, elongation factor Ts; Reviewed.	1.9618e-112
NZ_CP040098.1\|WP_137423400.1\|843433_846676_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP040098.1\|WP_137423394.1\|837171_838014_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	7.12511e-100
NZ_CP040098.1\|WP_170180178.1\|850494_852336_+\|M48-family-metalloprotease	gnl\|CDD\|320704	cd07345, M48A_Ste24p-like, Peptidase M48 subfamily A-like, putative CaaX prenyl protease. This family contains peptidase family M48 subfamily A-like CaaX prenyl protease 1, most of which are uncharacterized. Some of these contain tetratricopeptide (TPR) repeats at the C-terminus. Proteins in this family contain the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. They are thought to be possibly associated with the endoplasmic reticulum (ER), regardless of whether their genes possess the conventional signal motif (KKXX) in the C-terminal. These proteins putatively remove the C-terminal three residues of farnesylated proteins proteolytically.	4.91284e-100
NZ_CP040098.1\|WP_137423392.1\|834779_835520_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	5.11452e-148
NZ_CP040098.1\|WP_137423404.1\|853975_854353_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	2.60309e-47
NZ_CP040098.1\|WP_137423408.1\|858478_859438_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	3.25841e-142
NZ_CP040098.1\|WP_137423399.1\|842289_843423_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP040098.1\|WP_137423407.1\|857273_857885_+\|HDIG-domain-containing-protein	gnl\|CDD\|129396	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters. [Hypothetical proteins, Conserved].	2.17032e-12

>NZ_CP040098.1|WP_137423400.1|843433_846676_+|carbamoyl-phosphate-synthase-large-subunit
MPKRQDIRKILIIGSGPIIISQACEFDYSGTQACKALREEGYDIVLVNSNPATIMTDPEIADRTYVEPITPEAVEKVIRRERPDALLPTLGGQTALNTAVRLAETGVLDRYGVQMIGAQVDVIKKAEDRELFREAMKRIGLRVPESGIAQSLADAEAIAEAIGFPIIVRPSFTLGGTGGGVAYNREELLELARSGLDASFIHTIMLEQSVLGWKEFELEVMRDCMDNVVIICSIENMDPMGVHTGDSITVAPAQTLTDREYQAMRDAAIAILREIGVETGGSNVQFAVNPANGEMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGFSLDEIANDITRETRASFEPTIDYVVVKIPRFTFEKFPNTEDLLTTSMKSVGETMAIGRTFKESLLKAVRSLEIGRYGFTDPDPVVPPERLEELKQRLRKPNSRRLFQIAEAMKLGVSVEEIHRLTWIDPWFLHHMEEIVRLEEAVRRDPEFLDDPDRLRLAKSWGFSDIRLGELTGCDEEAVRRKRLASGIRPVYKLVDTCAAEFEAYTPYFYSTYEEEDEARPTDRAKVVILGGGPNRIGQGIEFDYCCVHASFALRELGMESVMVNSNPETVSTDYDTSDKLYFEPLTREDVLHILNSEQPKGLIVQFGGQTPLNLAVPLEKVGARILGTSPDAIDLAEDRKRFQQLVQRLGLRQPQNAIAFTVDEALEAARIIGYPVVVRPSYVLGGRAMEIVYDETSLREFMKTAVDVSPGHPILIDDFLEDAVELDVDAVSDGNLTVIGGIMEHIEAAGIHSGDSACVLPPYSVKKELQEEIKRQTRLLARELNVIGLMNVQFAIQNGDVYILEVNPRASRTVPFVSKAIGVPLAKLATKVMLGHTLQDLGFASEVEPRHVSVKEAVFPFSRFPNVDILLGPEMKSTGEVMGIGEDFGIAYAKAQSAAGFDLPLGGAVFISVHDRDKPAVVPVARQFRDLGFRLMATAGTRRFLHDQGIETEQVFKLSEGRPHVVDRIKNNDIQLVINTSLGRRTYSDAYQIRRTTLIYNIPYATTIAGAKAMAQAVATLQQGDWDVKTLQEYHAAFGRNTTARR
>NZ_CP040098.1|WP_137423399.1|842289_843423_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MTEPWKRPRALLVLEDGTVFKGHAFAGHGEALGEVVFNTAMTGYQEVLTDPSYKGQIVAMTYPLAGTYGVNDEDMESERIQVEAFVIKEYQDFASNWRSRKTLARFLEESGKIGIEGIDTRRLTRRLRLAGAMRGIISTETANVEELLDRVQAFPGLSGVDMVRRVTCPAPYRWENGPQPDADWNPRHPGLRVAALDCGIKYNILRNLERSGCQVKVYPAWTPADQILASDPDGVFLSNGPGDPAAVHYAVDTVRNLLGTKPVFGICLGHQLMGLALGGRTFKLKFGHRGANQPVKDLTTGRVEVTSQNHGFCVDLESMKGMPVRLTHINLNDNTLEGMEHLEIPAFSVQYHPEASPGPHDAVYLFERFVQLMEKHR
>NZ_CP040098.1|WP_137423398.1|841440_842181_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MKIYAVIPARYDSTRFPGKPLASLAGKPMIQWVVERTRETPELDDVLVATDDERIAGCVRSFGGRAILTRSDHASGTDRLAEAAQRAGFQDDDLVVNIQGDEPLVEPSMIRALVTALTETEAFPMATLAVESEAHQDFFNPNAVKVVMDRSGRALYFSRSPIPHRRDGDPRPARFFKHLGFYAYRKRFLLQFTQLPPGILERTEKLEQLRALEYGYPIRVAISPVETHGVDTPEDLERLERFLNRR
>NZ_CP040098.1|WP_170180176.1|840064_840952_-|50S-ribosomal-protein-L11-methyltransferase
MTKGSDWLLVRIPCEPEVVEFLAYEIAESLGIGVETEDTEVRFYVRRKDAEPLDPEIEGRLGSILEEVRLFLGSRTPKGYHVSAFSGSDWAGEWKRHFKPLRVGRRLVIAPTWEQVAAQPQDLVIRIDPGQAFGTGHHETTRLCLRWLEEQAVSKEGLHGGSLFDVGTGTGILAFAGALLGFGRVLGIDPDPQAVESALANRRENPACAGVELRCGTVADVKERFDVVVANIQANLLAAMAEDLAERVASPGRLALSGILLEQADAVRSAYQRQGLDFLEDERDGEWCLLAFKRE
>NZ_CP040098.1|WP_137423396.1|838815_840051_-|isocitrate-dehydrogenase-(NADP(+))
MSSHGNGAAWITVNTSGRLSVPPEPRIGFIEGDGTGPDIWRATRIVLEGAVEKAYGTDRKIHWQELLAGEKALKETGEWLPEETLRGIERCVVAIKGPLTTPVGGGIRSLNVTLRQVLDLYACVRPVRYYAGMPSPMKHPERVNMVVFRENTEDVYAGIEWPAGSDEAIRIARFLKESFGVDLPEESAVGIKPMSRLRTERLVRRAVRYALDRGLPSVTLVHKGNIMKFTEGAFREWGYALASREFADRTVSESEVYETHGGKPPAGRIVVKDRIADAMFQQALLRPEEYHVLATPNLNGDYLSDALAAQVGGLGMAPGANIGDRCALFEATHGTAPKYAGLDKVNPGSLILSGVMLLQHIGWNEAADCVERALQRTVSDKVVTYDLARQMEGAREVKCSEFAHAVVERMD
>NZ_CP040098.1|WP_137423395.1|837983_838841_-|ComF-family-protein
MPWWSGWTERGAAGRSSRRRMLKEVAAGIGDLLFPSQCVGCGDMGRIRPGAFWCGPCWDELPWIQPPWCPICGVPYLSAPKDREDAWCGDCIGGNHVFDAARSAVFYEGKVRQGILQLKFGGKLSWVPALSELLFEAIARDPWNDRVDLVIAVPLHRRRLRHRGFNQSSLLARALARRLPKPCRLDALERNRWTEPQTRLQRADRLENVKGAFTVKHPGEVEGRTVLLVDDVFTTGTTLNECARTLKKAGASAVIALTVARSIPKHRFHKKSASSVYPEGSVCAE
>NZ_CP040098.1|WP_137423394.1|837171_838014_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MSGLVDLEALEALVRRAADAILEVYRGTFDVEHKEDRSPLTVADTRSHRILADGLKALTPGIPVLSEEGKHVAYAHRRHWERFWLVDPLDGTKEFIKRNGEFTINVALVEGRLPILGIIHVPVADLFAVGDVRRGGEIRGPDGFRPLAIAKDPPAEGVRVVRSRSHASPDLERLLETLPGHRVVSKGSALKFIALAAGEADFYPRTGPTCEWDTAAGQALVTAAGGVVVDFHGNPLTYNKPDLLNGPFLAAPSLKWLEATGILARAARLPLHSAHTDPSG
>NZ_CP040098.1|WP_137423393.1|836183_837011_-|30S-ribosomal-protein-S2
MAVITMKQLLEAGVHFGHQTRRWNPKMKPYIFGARNGIYIIDLQRTVKLFRTAYQFVVDATAAGESVLFVGTKRQAQDTIAQEAERCGMYYVNHRWLGGMLTNFKTIKLRIDRLKELDAMFEDGSVNRFTKKEALGLQREREKLERNLGGIKHMTRPPGVVYVVDTQREKIAVAEANRLGIPVVAVVDTNCDPDLIDYPIPGNDDAIRSIKLVTSKIADACIEGRQRYEEERQAVHDKEAEAMEEVPAGQLLREEEGGPEVEIVNPVSGDREAEA
>NZ_CP040098.1|WP_137425703.1|835519_836098_-|translation-elongation-factor-Ts
MVRDLREKTNAGMMDCKKALQETNGDMEKAVDLLRKKGLATAMKRAGKAAGEGLIHAYIHAGGRIGVLVEVNCETDFAARSEAFQEFVKDVAMQIAATSPLGIEREDVPQEIVERERAIYVEQARESGKPENIIEKMVEGRLRKFYEENVLLEQSFVKDPDKTIQDYLNELVAKTGERVVIRRFTRYALGAE
>NZ_CP040098.1|WP_137423392.1|834779_835520_-|UMP-kinase
MTGGRTPRYRRILLKLSGEALMGDSAYGIEPRVIDRIAEEIAEVHRMGVETAVVIGGGNIFRGVSAASRGMDRATADTMGMLATVMNALALQQALEKHGAVTRVQSAIDMKEVAEPYIRRRAIRHLEKGRIVIFAAGTGLPFFTTDTAAALRAAEIGAEVIMKATKVDGVYDSDPRTDPNAVRYDRVGYDEVLAKHLKVMDATAISMAREHNMSIVVFSLQERGNILKAIFGETVGTVVEGSGHAE
>NZ_CP040098.1|WP_137425704.1|848561_849575_+|KpsF/GutQ-family-sugar-phosphate-isomerase
MFSPEQRKEDPSHQEALRIARNVLQIEAEGLLYLAEHLDERFAEAVDWIYGTPGRVIVSGVGKSGIVGRKIVATLSSTGTPSLFLHPVEAMHGDLGMVRREDIVLALSNSGETDEVNFILPSIRGIGARIIAFTGNLDSTLARTSDIAIYTGVPREACPLGLAPTASSTAMLAMGDALAVALIKKRDFQPKDFRRFHPGGQLGKRLQVNVREVMRTGPEVPAVHRNTPLQEAVEEIHRKRMGATLVLGGDGTLDGIFTDGDLRRAFQNLPDLRGRTVEEVMSRDPRSMGPDGSVAEALEVMERHLITVLPVVDGRGRVLGILHLHDLLGKGQIRFTA
>NZ_CP040098.1|WP_170180177.1|849583_850495_+|hypothetical-protein
MNQKRVMGLICRLFIPDPPERMDWNGFLSWISPHVDGFLLDPPFWSDRPGRCGMEPSDLAAVAALVDRLPPEKIVLCRVTGRDRPSTRSLLEALEKLTRDRPVRTGLFWLDLPLYYHSNRGLPDLYRDYGRLSPVPFMLENDPERVRAVKSVGRHVNLRTSVLKTLSLLPGIAGLIHHGNIDRALNYARAVVRRRDFSLMDGDERQFLEYPSTSGLVSIAANVFPRQWSVLVKNRLSGSTPLNQADILEIVYQMKHALEVVLENPAANLSHLLQRRGFLEGPEPAHGDRAERLDALLAAHLKD
>NZ_CP040098.1|WP_170180178.1|850494_852336_+|M48-family-metalloprotease
MYGQLLTFIVALLLFTIQEPGTEAIRPPIQTLSFVLAVFALFVLVCHLAFKPLNRALERGVSLAWASVLYHRVQMRLSVTALGALALDVYVFNIKAYFQSIPGFGRSFTLTGLIGLGLYLLHLAVVWFWAHPAHEKIHGATTRRGAFIKDHLSFHSALLIPWLLIALLSDALQFVRLPDLLLSEIGQILFFGLAFSLFLCFAPWLVVRLWGCEPLPPSPVLDELKRFCACHRFNIGDFLLWPLYGGDHLTAAVMGVLPRLRYILVTRGLLRLLSVDELKAVAAHEMGHVRHYHAFFYLVLFLCYAYLSSSYHDIILLLLLKQEPVLQWVLSSESSGQSLFSLVYSVPVIAMMVVYFRYCFGFFLRNSERQADLHAMRLIGHPFTLITSLQKIAIESGHIEDLPSWHHFSIRERIEFLSAAYENPELVRRHNRKLFGTAAVFITAVTLIASLGNGIRESETVQSWRHEVQLRVLEHQLNLQPGSPELYMAYSGMLIEEKRFDQARIILERAMEKEPEHPGVLNNLAWLYATAPPPLFDPQRALQLALKAATLKPEPYILDTLAECYYVNGLYREALVAIRHAISQKPEKMDYYLKQEKKFRKALEDSRRERSRG
>NZ_CP040098.1|WP_170180179.1|852753_853953_-|DUF2333-family-protein
MGVRRAPAGTLVAELLRASKSIRGGFFLACVLAVMLGTAAGSCWALQRHSLQPGQTAQGSSSGQGPSVPSDHGAAAPVHDGVRPQSAVPRGGVPIEGGREPSATAPPTHGMPGETESIPTAPPGEALPLEAPGIHVGEHEAHGVVLPQISDIPGVTFVETMIQLMRYELDERFLGWRPNDLILGRFTDNVNNYQLGVLEAMRFTTLRLKDSLTRMGEADSYDKDLESALNLFMNKATLFWFPSAESSYSEAVKHLENFQAKLQNGQRFFYYRVDNLLSLIRTYNDLLGNVNKTLIIGTHADGSKVSFFEVDDYFYYAKGVAHVLYEIMKVVRVGYKDQLITLDAVDIMDEILHELHRAEEMDPWIILDGDLDGFLANHRANLNAPLSEVAHLFGILSRF
>NZ_CP040098.1|WP_137423404.1|853975_854353_-|6-carboxytetrahydropterin-synthase-QueD
MYEVKIISEFSAAHHLRHFRGKCENLHGHNWKVEVVVRGSCLDESGMLIDFGVVKQITREILGGLDHRYLNDLPAFKERNPSSENIAEHLFEGLSERINNDHRWVYCVSAWESKDACATYWNDRR
>NZ_CP040098.1|WP_137423405.1|854878_855166_+|integration-host-factor-subunit-alpha
MTLTKAHIVEKLFAENLFTKAESAQIVETLFEIVKQTLENGEDVLISGFGKFSVKEKNQRRGRNPQTGEPILLAPRRVVTFKCSGVLRDKINAGD
>NZ_CP040098.1|WP_137423406.1|855220_856579_-|chromosomal-replication-initiator-protein-DnaA
MVQEWQQIKEELKSGLSRGQYDLWVSTLDCLGCDDDQLVLGCKNWLHVEWVRGKIHDRLLQAAAARFPEVRGIRYKIIASDPLQVEEAEPETDLGPRQISFADVAPEHRPLFNPRFTFDQFVVGQSNQFAYATCRAIAGDQPFFNQSIYLVANPGLGKSHLAHAVGNLFFSERSGTRVHYVTSEQFANEMIGALKQDRIEGFKRKYRENCDVLLLEKIEFFSGKRKIQDELVYTLDELLDRGKKIVCTGNASPKDIPKLNSELRSRLSGVLVAPIEPPDFHTRVAIVRKKAAYENVKLPAEVAEFLADQVTSDVRQLESCLIGVMAKSNILGVPISLALAQEVSQALLDSLPNLGMENIVQTVCSTFGVTPNDLRSRARGKQLSQARHVAMYLCRQYTSESLASIARAFGRSHSTVLYAVRRMQQELDGKNASLKRQVDYISRRLETGCLFP
>NZ_CP040098.1|WP_137423407.1|857273_857885_+|HDIG-domain-containing-protein
MRIPSRSECLELMEAVELPQNIRRHSILVADAACRLARLASRSHPRLNLPLIEAGGLLHDIAKGICLAQKCNHASVGAALVRQWGFHAVAPIVEQHISLTEEDIRGPVTESLIVNYADKRVRHDQYVTLEERFEDLIDRYGRTSAQKDLLRQRLCLYRELERTLFRGLPVEPDFLFTTLPEAFEAACGPPSSDLGKGSPKTNS
>NZ_CP040098.1|WP_137423408.1|858478_859438_+|D-alanine--D-alanine-ligase
MEKKRKLCVALLAGGKSAERDVSLSSGDQVFSALDKARYDIRRYDPRDDLVRLAREASDIDVALVLLHGRLGEDGTIQGFLESLGIPYQGSGVLGSALAMNKIMSKALYQQAGLPVADYVIADEASGPDAAYTFARKSGYPVVVKPEHEGSSIGLSIARSEDALEGALTTAWRYDRRCLVERYIKGTEITGGVLGNDRLEALPLVEIIPGEAFEFFDHEAKYTPGATREICPARLSAEITQIAQDYARRAHQALCCRGYSRTDMIATESGAVYVLETNTIPGMTRTSLFPQAAAAAGLTFSALLDRLIELALEHWGRRP
>NZ_CP040098.1|WP_137425705.1|859462_860086_-|hypothetical-protein
MEPRIQKVEHFPPEELCARMRHVTLLKRPEILVYRQADVSLKEIPTSDLHPAQRYVLVQELQKVRWLKWALTHFGHDLFRLNGYVKVWLRGADGPMDVLPPVVEESREANGRTVNLINDGMHRLYLAYLEWVTPQVIFVKGVPEDLPYYAFPNPRQWDDIAIVDELPEGYIKKWHRIPDYHSLYRNFNSAFDNVGAPRGRFTRAEPQ

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Crispr_ID: NZ_CP040098_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_12

909808-909907

Orphan

Consensus_repeat	Method
ATGTTCGACGTTCATCTTTAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_12

>merge|NZ_CP040098|12|909808-909907|CRISPRCasFinder
ATGTTCGACGTTCATCTTTAAAAACAACCCAATGGCATAAATGCGCCCCGGTTTTTCATTCGATGTTGGACGTTCAATGTTCGATGTTCATCTTTAAAAA

>NZ_CP040098|12|12|909808-909907|CRISPRCasFinder
ATGTTCGACGTTCATCTTTAAAAA	CAACCCAATGGCATAAATGCGCCCCGGTTTTTCATTCGATGTTGGACGTTCA
ATGTTCGATGTTCATCTTTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423453.1\|916850_919283_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP040098.1\|WP_137423441.1\|899057_900896_+\|menaquinone-biosynthesis-decarboxylase	unknown	unknown	gnl\|CDD\|163413
NZ_CP040098.1\|WP_137423443.1\|902273_905054_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|274682
NZ_CP040098.1\|WP_137423455.1\|919909_920467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180183.1\|913929_914439_-\|response-regulator	unknown	unknown	gnl\|CDD\|381113
NZ_CP040098.1\|WP_137423449.1\|913326_913734_-\|hemerythrin-family-protein	unknown	unknown	gnl\|CDD\|274154
NZ_CP040098.1\|WP_137423454.1\|919660_919861_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340396
NZ_CP040098.1\|WP_137423437.1\|893293_895585_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_CP040098.1\|WP_137423445.1\|907739_907952_-\|type-II-toxin-antitoxin-system-MqsA-family-antitoxin	unknown	unknown	gnl\|CDD\|240606
NZ_CP040098.1\|WP_170180184.1\|915634_916846_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP040098.1\|WP_137423451.1\|914483_915638_-\|response-regulator	unknown	unknown	gnl\|CDD\|381113
NZ_CP040098.1\|WP_137423444.1\|905297_907610_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|223110
NZ_CP040098.1\|WP_137423442.1\|900960_901908_-\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|183829
NZ_CP040098.1\|WP_137423438.1\|895673_897098_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP040098.1\|WP_137425707.1\|920620_922585_-\|Cache-3/Cache-2-fusion-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP040098.1\|WP_137423446.1\|908205_909336_-\|KamA-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224426
NZ_CP040098.1\|WP_137423448.1\|912432_912939_-\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NZ_CP040098.1\|WP_137423440.1\|898247_898967_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP040098.1\|WP_137423439.1\|897371_898232_+\|UbiA-family-prenyltransferase	unknown	unknown	gnl\|CDD\|237247
NZ_CP040098.1\|WP_137423447.1\|910185_912114_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137423453.1\|916850_919283_-\|PAS-domain-S-box-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	7.53249e-58
NZ_CP040098.1\|WP_137423441.1\|899057_900896_+\|menaquinone-biosynthesis-decarboxylase	gnl\|CDD\|163413	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family. Members of this protein family are putative decarboxylases involved in a late stage of the alternative pathway for menaquinone, via futalosine, as in Streptomyces coelicolor and Helicobacter pylori. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NZ_CP040098.1\|WP_137423443.1\|902273_905054_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|274682	TIGR03623, TIGR03623, probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.	1.24744e-47
NZ_CP040098.1\|WP_170180183.1\|913929_914439_-\|response-regulator	gnl\|CDD\|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.89666e-62
NZ_CP040098.1\|WP_137423449.1\|913326_913734_-\|hemerythrin-family-protein	gnl\|CDD\|274154	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.	1.50537e-44
NZ_CP040098.1\|WP_137423454.1\|919660_919861_-\|hypothetical-protein	gnl\|CDD\|340396	cd16919, HATPase_CckA-like, Histidine kinase-like ATPase domain of two-component sensor hybrid histidine kinases, similar to Brucella abortus 2308 CckA. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinase (HKs) similar to Brucella abortus 2308 CckA, which is a component of an essential protein phosphorelay that regulates expression of genes required for growth, division, and intracellular survival; phosphoryl transfer initiates from the sensor kinase CckA and proceeds via the ChpT phosphotransferase to two regulatory substrates: the DNA-binding response regulator CtrA and the phospho-receiver protein CpdR. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), a REC signal receiver domain, and some contain PAS or PAS and GAF sensor domain(s).	8.04592e-18
NZ_CP040098.1\|WP_137423437.1\|893293_895585_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP040098.1\|WP_137423445.1\|907739_907952_-\|type-II-toxin-antitoxin-system-MqsA-family-antitoxin	gnl\|CDD\|240606	cd12870, MqsA, antitoxin MqsA for MqsR toxin. This family includes domains similar to the antitoxin MqsA that binds motility quorum-sensing regulator MqsR, a toxin that is highly upregulated in persisters (dormant cells found in biofilms that are a source of antibiotic resistance), thus forming a unique toxin:antitoxin (TA) pair. MqsA neutralizes MsqR toxicity. It binds its own promoter as well as those of genes important for E. coli physiology, such as mcbR and spy. It also binds zinc and has been shown to coordinate DNA via its C-terminal domain. This family also includes the B. subtilis YokU protein, which is functionally uncharacterized.	9.17518e-10
NZ_CP040098.1\|WP_170180184.1\|915634_916846_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	1.22239e-68
NZ_CP040098.1\|WP_137423451.1\|914483_915638_-\|response-regulator	gnl\|CDD\|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.59982e-48
NZ_CP040098.1\|WP_137423444.1\|905297_907610_+\|cysteine-synthase-A	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	4.48573e-144
NZ_CP040098.1\|WP_137423442.1\|900960_901908_-\|ketopantoate-reductase-family-protein	gnl\|CDD\|183829	PRK12921, PRK12921, oxidoreductase.	6.32312e-96
NZ_CP040098.1\|WP_137423438.1\|895673_897098_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	7.90526e-137
NZ_CP040098.1\|WP_137425707.1\|920620_922585_-\|Cache-3/Cache-2-fusion-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.52646e-56
NZ_CP040098.1\|WP_137423446.1\|908205_909336_-\|KamA-family-radical-SAM-protein	gnl\|CDD\|224426	COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and metabolism].	5.33156e-132
NZ_CP040098.1\|WP_137423448.1\|912432_912939_-\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.70497e-13
NZ_CP040098.1\|WP_137423440.1\|898247_898967_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	1.3171e-92
NZ_CP040098.1\|WP_137423439.1\|897371_898232_+\|UbiA-family-prenyltransferase	gnl\|CDD\|237247	PRK12886, ubiA, prenyltransferase; Reviewed.	6.36846e-87
NZ_CP040098.1\|WP_137423447.1\|910185_912114_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0

>NZ_CP040098.1|WP_137423446.1|908205_909336_-|KamA-family-radical-SAM-protein
MFEIEAKTGEASGSLVVQGRGQAAVSGGAGRIEAFAGRWSVPAEPLRRVAEVYPFRTSAHFERLMQRPGDPIWMQVVPDPRELQDAGGFRDPLGEEERSPVPNLVHRYPDRVLWIVCNRCAVHCRFCTRKRRWTDSVPADASLQAAGLDYIKKHPEIRDVLLSGGDPLMLHPSTLEEYLRALRAIRHVAIVRIGTRVPSADPDRITPELARMLALYHPLYVNIHFNHPREINSRSALACSRLADAGIPLGSQTVLLQSVNDSAEVLRELFVGLLRLRVRPYYLFQMDLMESTAHFRTPLHRGLAIVQSLRNRISGLAIPQFVVDLPGGHGKVPLLPNAIHRVKQDRVVFRDFTGKNREYPLMPGEEDELKRFLSAE
>NZ_CP040098.1|WP_137423445.1|907739_907952_-|type-II-toxin-antitoxin-system-MqsA-family-antitoxin
MKCMYCQGTMVRGHAPFHIDRENIHVSFDNVPAWVCTQCGEVYFEETEVNAVQDVIKAVDEQAHKLARTA
>NZ_CP040098.1|WP_137423444.1|905297_907610_+|cysteine-synthase-A
MKNVFGNILGCIGNTPLVRINRLNPNPRVTVYAKLEMKNPGGSIKDRAALSMIEAAEKSGELTARKTIIEATSGNTGIGLAMVAAVKGYRIVLAMPETASMERQKILKALGAELLLTPGNLGTDGAIEEVYRLVRENPDRYYMPDQFNNPANPGAHYHGTGPEIYEQTDGKVNVVVATLGTGGTAMGLVRSLKERDPAIQVVGVEPYPSHKIQGLKNMKESYVPGIFDRHALDSVMHVKDEEAFETARRLAREEGIFVGMSSGAAMAVALKIAQERTDGIVVTVLPDGGDRYLSTNLFTTMMEPDFRFFDHLSRAKKDFKPVQEGKVRIFITGSPLDQSLTLQASRRFVLADLLVRFLMTKGFQTESAVLIPDLDSRTIHGAIQAGSKLEDYAAAREAALLKEMDSLGIRRPTCARISDHVSAMVDYARELLKKGYAYEKLRSVYYALSEFPRYGELARIDPRKTRAGSTVDLEAYEKLNPRDFTLLKRATLAELKRGFYVKTEWGNVLPTWHIAAASIAISQLGSPLDLCVSSTDFLFPHLENVRAIAEAITGKPYANTWMLAERVTTAREPESGGPRENVLLEDVLSRGFEPMAIRFWFLSSHYRKPLHLSDAALNNAARGYRRLRECINRLQHARENREDHPTLAEMLFTMEQNFFDALADDLNTPQAFAALFRFVRRLNPILESEAISRTQRDQVLEVFHKINTVLGLFDLELQPLSEEEERLLSARESARREKRWDEADRLREALRRRGIAVVDTPHGPRWERLH
>NZ_CP040098.1|WP_137423443.1|902273_905054_-|PD-(D/E)XK-nuclease-family-protein
MTNQALQEHLAALLEKGVTVITESERLAHQLLYAWRLARAATESGGWERPQIFSLNGFLRRIWESAWPKEMPARALYRWRVLSDCLRNQPPPGPLAADAALVLELDDTFRWCLRYGLDPGEGGSSNELVQWRRGVWRRFRERMETAGFFHEAELPRRLVEARERGRRLASGPVAAVGFEFAGTWEKRLLEMLVKKEGARVFPLPQGNAENASFLAFADREQERHGILERLDQDARRGALHETAVVLLDPEHYRDGFRKLLADVYGAPLQGSLAAYNVPGGDSLERSPIFCAGLLPLEFAVQGERRVDLLSLFRSPYFGRFAPRTRALCRWDRLWREKAVEKGLALLLSVVPPEVRAVLPEGGEEVARAVSGLRSTGLRSGSDWVRALRAAWEELEFPVLSGEEDRNEWKHLKQVLPAFEQAFGDEAMTGGDFLGWIREAARQVVVQRKGTEEAGFQVIGALEARGLVFRRLYVPGLVLGVLPQPARSFPFLSREERSAVQGGTVESQLRFGEHLFHQLLAVAPEVVFTRPGADEKGEPLPPSPFWLQERERSSGTSSVWLDPGPALQRASWVAEGLAALAGRHAESGAAAKSLEGPGTLEPATSAAAAMNPAAVSTATNLPAALAEQLVPRQIQATELETLLKCPCLYLFRHVLGVEPLPDAIRGLDPRERGRAVHGILAAFSARAEEIKRREPARWNFQTLEALLRDQLAKAWREVDSIAYWQVEKKRLLGVGEAVRGLLVVWLEKEWERLESGWSWVFAERAFQGLEIRGVPVTLKGRLDRLDHHPEEGWICWDYKTGRPPSTKEIFTEMSRPQLPAYLLAVKRGVVPGLSLESDRLEAGFIELTSAGNVRHIVVLKDSGQLDTFLADWETRVGEALAALLRGELVPRWSGEDRGCASECPYALLCSAFLQDVTHCAQERQEAV
>NZ_CP040098.1|WP_137423442.1|900960_901908_-|ketopantoate-reductase-family-protein
MKIGVMGTGGVGGYFGGLLARSGSDIHFIARGKHLRALQDEGLELVTNHGNFRVRIHATAEADEIGPVDLLLFCVKSHDTDQAAQLAEPMVVEETVVLSLQNGIDNVDKLSAHFGRERVMGGTAYIESTIASPGVIAHTGKPGRLVFGELNGERTARAEAVLDVFLKAGIDAELTTRIHEVLWSKFLFICGVHGVSTLSRSTLGLVLASPETRDLLENVMREVETLARKRGIALEDDVVRQSMELAQSYNKRFKCSMLRDLEWHRPMEIEALNGMVVRLGKEAGIQTPLNQVIYACLKLENKKIINPVWASQLTD
>NZ_CP040098.1|WP_137423441.1|899057_900896_+|menaquinone-biosynthesis-decarboxylase
MTQRAYRNLGAFAAALEKAGELLRIQAPVSRDLEITQITDLASKSPGGGKALLFENVTGSHFPVLTNAFGSERRICMALGVPDLDVLAHRVRRFIEMEPPKSFGDAVRLLPLGWDLLRFFPRRVNKAPCQEVVYRDRAVDLGILPVLKCWPLDGGPFITLPVVITRSLKTGRRNAGMYRLQVFDAKTTGMHWHIHKDGSHYYQEYRKAGRRMPVAVAIGTDPATTYAATAPLPRGVDEMILSGFIRRKPVPMARCLTVDLEVPAEAEFVLEGYVDPEERRLEGPFGDHTGYYSLTDEYPVFHVTAVTHRRGAVYPATVVGRPPMEDCYLAKATERLFLPLLNAVLPEIRDYWLPWEGVFHNITVVAIDKEYPGHARRVMSALWGQGQMSFCKALVVVDADVDLKNPRRLLETILNESDLESDLYVTEGVLDVLDHSAPEPLFGGKVGLDATRRLAGERGRALPEAPRLPDISNVHKALEDLSGAFTGFLVPHLAVRNPALLLNVAKDGSFSSRRLATQLLEHPGLTAFSIACLCDAWIDLNDASLVLWKIFNNVDPKRDILKRGRRIVVDATRKGPEDGHDRPWPDDIVMDPEVVERVRRRAKELGIEAFLH
>NZ_CP040098.1|WP_137423440.1|898247_898967_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MKPVSIDKNQRRIREMFDGIAATYDFLNHFLSAGLDLWWRRSAARILAPAPRSRLLDVATGTGDLAFAALAREPSLHIIGVDLAPEMLKRAMAKAEARRIVDGRYRVLVGDALHLPCRDGSFDAVTIAYGIRNVPDMGAALQEFHRVLKSGGRLLILEFSLPTHPLFRCFYLFYFETVLPAVGRWISQDREAYEYLPASVGAFVSPDAMEAIVQRSGFRPESVTPLLGGVTYVLTARKP
>NZ_CP040098.1|WP_137423439.1|897371_898232_+|UbiA-family-prenyltransferase
MRFRSLFTYGRLIAFSHTIFALPFALASVVLAAQTHPFSWGKLLWIVIAMAGARSAAMGFNRYADRRYDRRNPRTVSRPSVTGEIGSRSLLLFVGASSAVFVGSAAMLNRLCLWLAVPCLAVLFFYSYTKRFTVFSHLFLGFAIGLAPVGAWIAWTGGLDPRILPLSLALMTYIAGFDILYACQDVDFDRRAGLHSIPSRWGIPAALLISSALHGATFLLLLALQPLFQLGRIYTALLVVIGSLLLLEHLLVRPSRLDKIPIAFFHVNSAVSVLLILAIFLDRAFV
>NZ_CP040098.1|WP_137423438.1|895673_897098_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MTTFKKGRELDVEIEKLAYGGQALSRVDGFVVFVDGALPGQRARVRISRKKRNHAEAQLLEVLRQTPDYREPFCEHFGVCGGCRWQDLAYERQLYWKRRHVLECLQHLEGVAEEVVSDAVPSPQVTGYRNKMEYTFSDQRWLSPEEIAAQEVVYDRCFALGLHVRGFFDRVFNVNRCHLPVPESMEILRFVREWCRESGLPAYSIRNHRGFWRFLVLRDGKRTGQMLAHLITGDLPGGASAVDALAETLRARFPALSTVVHSVNTSRAQVAVGPVSRTCFGPGFIEERLEDLTFRISAHSFFQTNPLGAEALYRTVREFAGLTGVETVWDLYCGTGSIALFLARRARAVAGFEAVAEAVEDAYRNCALNGIENCRFRVGDLKDVIGQASDAPAGLGRPDVVVTDPPRAGMHPKVTAALLQLAPRRIVAVSCNPSTLARDLSLLQERYRIMEVRPFDLFPHTPHVECVVRLERKG
>NZ_CP040098.1|WP_137423437.1|893293_895585_-|PBP1A-family-penicillin-binding-protein
MTAKKKKNRSGKPPKTGGRRARWLKALLVFGTVIVFLGGGIFVYLAVQVDKRFGAKRWSVPATILSDTVILYPGRSLSLTDVTQMLERRLYRPSKTGDLKPGEFHAGRDRLKVYFRDSQLPGKRLPSRLVTLQFQNGRLKAIASPQEPLPYLEIEPVVLDRLFGPERESRHLVNIRQVPQHLLDAVTAIEDHRFFEHPGVDWWAILRALWTDLRAGRVVQGGSTITQQLVKNYFLSSERTLRRKVMEAALALVIEVRYSKEEILEMYLNEIYLGQRGSVAVHGVGEAARYYFGRNVEDLTLAESAVLAGMIRAPNRYSPYRNPDACKERRAMVLHRMREIGKISPEELEAALSEPITVAPSHLPVKAAPYFTDYVRYQLEELYEPEVLASEGLLVHTSLHPELAFAAERAVAEGLRELEKARPKLKASDPEKALQAVLLAVQPRTGEVLALVGGRDYAVSNYNRALFARRQPGSAFKPFVYLAALDQFTAVSWLLDEPITYRTNGDLWSPRNYDGRYRGRVLFRDALAHSLNAATVNLAMQVGLERIIATARALGIQSEMRPFPSLALGSFEVTPLELATAYATLANDGQRPFLLSLRRVVTAEGTVEQRRYMDLESVTSPAKAFLITHLLQAVVQEGTARRALSMGIDFPCAGKTGTTSDYRDAWFVGYTSDLLVLVWVGFDDNRSTGLSGSSGALPIWIRFMKSVEPWMNPREFQIPPGVVERLVCPVSGELATQYCPERIIEYFLPENTPRSACSYHAPR
>NZ_CP040098.1|WP_137423447.1|910185_912114_+|excinuclease-ABC-subunit-UvrC
MPPKPVIADNPVDPGLIEEAARLPHQPGVYIFKATDGEVLYVGKAVDLKNRVNSYFRSGQGATVKTRALVARAGHLEYMVTATEKEALLLESSLIKRHRPRYNVVLRDDKNYPALRIDPREEYPRLTVVRRFERDGALYFGPYHSAHSLRETLKILNRAFPLRQCKGKKPPPRQRPCLNYSMGLCLGVCAGKADKEDYRRIVDEVILFLQGKADRLQAQLKERMESAAASLRFEEAALCRDRLRAIEEVLERQHIISDRFNNQDAIGIFREAGETAVVVLFVRHGALVGQRRYRLGDLPGDTPEILSGFIQQFYSKEHLIPDEILVPQPVAHRDVLEEWLRDQRGRRVPVRPVRRGTGKSLLELAHRNAKEFLKSERNDSEKTERILSQCCDLFGLPRKPHRMACVDVSNIQGRHAVGSVVIFVDGRPHPLDYRRYTVKRKATPDDPNMMAEIVERFLEEERDQVSRLDLFVVDGGKSQLNRIRRLFVERGLETGLPLIAFAKEREKDLGGEGRGFYEKVYLPGRRNPIFLTARPEVLHLLQRLRDEAHRHAVTFYQKRHRRDLVASTLDAVPGIGPKRRRLLLLHFGSVEAIQQADVDALAAVPGIPRPLAASILEHLSRLEERTEKPPAFGDTESQSEES
>NZ_CP040098.1|WP_137423448.1|912432_912939_-|DUF721-domain-containing-protein
MRGNTSRLGAFLRDALNRHPAFSANPLGDWKELAGDQVARHCRPKSLKEGLLVLVASDAVWKHHMELHKEILREKINAGREKPLVEKIVIRIGEVPEEEAAINPGHQLLDRLKAKKQRTRRQQAKLRPLTAEEEALLAAIPDKELRKIGSRLLRRTTPPEIPQELDRG
>NZ_CP040098.1|WP_137423449.1|913326_913734_-|hemerythrin-family-protein
MAFFDWKDDYSVGIKKLDDQHRNLVRLLNDLYDAMHSGKGKEVLGKVLNELVAYTKTHFASEEALMKMYDYPGYADHRQKHEKMTQHVYALVEKFEAGEITSPIQISNFLKDWLSKHILQTDKAYGPYLTGKGAV
>NZ_CP040098.1|WP_170180183.1|913929_914439_-|response-regulator
MSATVLFVDDEPKITDALKRILRREPYRVLCANSAKEALNILGGREVDVVVSDEKMPGMSGSDFLALVAEAYPETIRIVLTGQASLEAAIRAINEGGIYRFLTKPISESNLTATIRQALEHRSLVKKVAEIRKKEHSRAAALKALERSYPGITELREDASGTIIIDDVF
>NZ_CP040098.1|WP_137423451.1|914483_915638_-|response-regulator
MKDRVLFVDDESNVLEAFKRQFRKLFDMEVAPSGKEGLQRIAGGNGFAVIVSDFKMPVMDGVQFLSRAKEIAPESVRIMLTGYADVKTAIEAVNSGHIFRFLTKPCPPELLAQAIAAGVKQYRLIHAEKELLEQTLKGAVKVLTEVLALTNQEAFGRSTRVTRYVKKIAARLKSSNTWKLETAAMLSQIGCITLPEEILQKFCRGEALSVDEEAVYRMHPAVAADLLEKIPRMSEVAEIVACQENRFDGAGKAPVPRKGEEIPLGARILKVALDFDILETAGRSQRDALQEIKGRNGVYDPAVVAALEDVIRMDSGYARRSCKLTELKENMIFAADVRAMDGRLLITSGNVATRPLLQRLNNFSQTMKIRQPVEVLVPVGDWVF
>NZ_CP040098.1|WP_170180184.1|915634_916846_-|HDOD-domain-containing-protein
MVKTVLFVDDEPKVLEGLHRMLRSMRREWRMGFVTSAMEALKVLDKEAVDVVVTDMRMPGMNGVEFLTQVMKRHPDIVRIILSGHSDREMIMKSVPVAHQYLAKPCDAEVLKSCVARACALRELLADPLLKKVVSRMGCLPSLPSLYAEITEELRSPDASIQRVGEIISKDVAMTAKILQLVNSAFFGLRRRVANPAQAVNFLGLETIKSLVFAVQIFSQFEGRKLHGFSLEALWDHSMTVAAFARMIAREEEAEPMVIEAAFMAGLLHDLGKLVWVINFGEAYMSVLAEAQQRRIPVQMIEREHFGTSHGEVGAYLMGLWGLPDNMVEAIAYHHSPGTLPSPGFSALTAVHAADILTHDLQKNSPVFIQQEVDSDYVEAAGVADRLPHWRKLCENSMAGEEL
>NZ_CP040098.1|WP_137423453.1|916850_919283_-|PAS-domain-S-box-protein
MEKGFAEARRTEQILIVDDEAGIRNLLRELLQKHGYRCRTAADAREARAILEAEPFELVISDVNMPGESGLSLVRHVFENCPDTAAVMVSVMDDPQVAREAFGLGIYGYVVKPFDLECVLIVVENALRRRRLEIENRLHRETLEKLVAERTKQLQVSCERYRELVETLPGVVYTGATDWAIVFVDEKVRDLTGYSAREFLSGEVRWPDIILPEDLPGAKKAFRDALTGCLQFVREYRIRTRSGDAAWIQDRGKIVCREEGKVDHVSGFLFDITERKRTADAIVQAKEEWENTFDAVPDLIAILDADHRIVRMNRSMSKRLGVTLEEAVGRHCHELVHGLSEPILGCPHGRMLNSGEEYSAEIYDERLKGWFHVSCSPLHAPDGRMIGGVHVAREVTALKETARALRRAHAELSQLIEAISSVLITLDSKNRIVRWNSHAERVFGFTADQVRGKRLEDCDLRWQWGRVCDILARCRDSRAPQRLEEVRFTRPNGKQGFLGMVFTPIPREGEEGSYVLIMAADITHRKIMESQLAQAQKLEAIGQLAAGIAHEINTPTQYVGDNTRFLKDAFDEILSIVRGYGALLERVKSEQPDHPDVRAIEELIQEVDLDYLMEEIPRAIEQSLDGVGRVAKIVLAMKEFSHPGVEEKVAVDINKAIENTVTVAHNEWKYVAELVTDFDRGMPNVPCLPGELNQVFLNIIVNAAQAIAEKTGDRPEAKGTITIRTRKNGGNCEIAVTDTGGGIPEEIQSRVFDPFFTTKEVGKGTGQGLAISHDVVVNKHGGTITFESEPGVGTTFLIQLPLDDSNAEKG
>NZ_CP040098.1|WP_137423454.1|919660_919861_-|hypothetical-protein
MSTGHKPGRYVVLCVADTGEGMDAETLSRIFEPFFTTKETGPGAGRSPCFPPPDLKTGRTPTYRKI
>NZ_CP040098.1|WP_137423455.1|919909_920467_-|hypothetical-protein
MASYQVIADFTLSEGKLLRVLEPSRMDRIVVVFLAKAAGVKLKADDIYSGKLYTTPFGTISVESDGLVLDANPFNAREGKALIGRLARFARIAAMPEYAERVKLVLSEKFEILNEIRGEKALLMLLVLRGSDGEVFGVAVRTDGLKALAIKGKSPDNEFVVGLYDCLRKAGLADGLSFAKRSSPA
>NZ_CP040098.1|WP_137425707.1|920620_922585_-|Cache-3/Cache-2-fusion-domain-containing-protein
MRILPLLRTTRSKLIVSFLGVSFLVGAVSLVVGGHLLYRTFMGEATNRVRQDLNAARHMYEDRCRRVELALAVTTLGRGFREALQPERSRELTERLARVAEWAGLDFAGVADTRGRAMVRLSGESVPEDAVRCAPNPLAELSLKTNRGVSGTLVLSEAWLRCEDPVLAERARIQLVPTPPAGSGEDTILTSGMVLAGAVPIREEGAVIGVLYGGVLLNRSTEIVDTVRNTVFKNERYRGREIGTATIFFKDIRIATNVLLENGARALGTRVSSEVAERVLGKDLNWADRAFVVNDWYLTAYEPIEDVFGERVGMLYVGVLEQPYADVRRKALTVFTVLSLLGITLAVGLGWFLEKKIMRPIHLLTDAADAVSRGNLSPDLGSISESEVGVLQKTFESMLASIRERESRQREESASMLALAQRQASVGRLAAGVAHEINNPLTGVLAFSHMLLDRHDLDEEARESLQMIAEATERVRRIVRGLLDFSRRTDIDPEETAIEGLVRSTLTLVENQALVKGVELQVEAAADLPLVTVDPGQIRSVLVNLVINALDATDPGGRIRVSVRSVPAASEGEGRGSGVEIAVSDTGVGIAPENIEKIFDPFYTTKEIGKGTGLGLSVSYGIVARHGGKITVESEVGRGSTFKVWLPAHRREEA

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Crispr_ID: NZ_CP040098_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_13

930004-930130

Orphan

Consensus_repeat	Method
GAACATTGAACGTCCAACATCGAATGAAAAACCGGGGCGCATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_13

>merge|NZ_CP040098|13|930004-930130|CRISPRCasFinder
GAACATTGAACGTCCAACATCGAATGAAAAACCGGGGCGCATTTATGCCATTGAGCTGTTTTTAAAGATGAACATCGAACATCGAACATTGAACGTCCAACATCGAATGAAAAACCGGGGCGCATTT

>NZ_CP040098|13|13|930004-930130|CRISPRCasFinder
GAACATTGAACGTCCAACATCGAATGAAAAACCGGGGCGCATTT	ATGCCATTGAGCTGTTTTTAAAGATGAACATCGAACATC
GAACATTGAACGTCCAACATCGAATGAAAAACCGGGGCGCATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423453.1\|916850_919283_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP040098.1\|WP_170180185.1\|925282_927976_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274732
NZ_CP040098.1\|WP_137423465.1\|938680_939025_+\|DUF4405-domain-containing-protein	unknown	unknown	gnl\|CDD\|379580
NZ_CP040098.1\|WP_137423463.1\|936910_938032_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP040098.1\|WP_137423456.1\|922958_923672_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP040098.1\|WP_137425708.1\|930470_931193_-\|NAD-dependent-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_CP040098.1\|WP_137423455.1\|919909_920467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423454.1\|919660_919861_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340396
NZ_CP040098.1\|WP_137423457.1\|923994_925263_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_CP040098.1\|WP_137425707.1\|920620_922585_-\|Cache-3/Cache-2-fusion-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP040098.1\|WP_137425709.1\|933016_934795_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP040098.1\|WP_170180184.1\|915634_916846_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP040098.1\|WP_137423464.1\|938230_938587_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238042
NZ_CP040098.1\|WP_137423451.1\|914483_915638_-\|response-regulator	unknown	unknown	gnl\|CDD\|381113
NZ_CP040098.1\|WP_170180187.1\|941111_943064_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP040098.1\|WP_170180186.1\|928123_929839_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP040098.1\|WP_137423462.1\|934814_936641_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP040098.1\|WP_137423460.1\|931222_932020_-\|RimK-family-alpha-L-glutamate-ligase	unknown	unknown	gnl\|CDD\|223267
NZ_CP040098.1\|WP_137423466.1\|939299_940787_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP040098.1\|WP_137423461.1\|932370_932970_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137423453.1\|916850_919283_-\|PAS-domain-S-box-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	7.53249e-58
NZ_CP040098.1\|WP_170180185.1\|925282_927976_-\|hypothetical-protein	gnl\|CDD\|274732	TIGR03703, plsB, glycerol-3-phosphate O-acyltransferase. Members of this protein family are PlsB, glycerol-3-phosphate O-acyltransferase, present in E. coli and numerous related species. In many bacteria, PlsB is not found, and appears to be replaced by a two enzyme system for 1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y system. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.15742e-121
NZ_CP040098.1\|WP_137423463.1\|936910_938032_+\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.98893e-61
NZ_CP040098.1\|WP_137423456.1\|922958_923672_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	2.29571e-50
NZ_CP040098.1\|WP_137425708.1\|930470_931193_-\|NAD-dependent-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	7.14962e-126
NZ_CP040098.1\|WP_137423465.1\|938680_939025_+\|DUF4405-domain-containing-protein	gnl\|CDD\|379580	pfam14358, DUF4405, Domain of unknown function (DUF4405). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 50 amino acids in length. There are two conserved histidines that may be functionally important. This family is N-terminally truncated compared to other members of the clan.	5.94791e-07
NZ_CP040098.1\|WP_137423454.1\|919660_919861_-\|hypothetical-protein	gnl\|CDD\|340396	cd16919, HATPase_CckA-like, Histidine kinase-like ATPase domain of two-component sensor hybrid histidine kinases, similar to Brucella abortus 2308 CckA. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinase (HKs) similar to Brucella abortus 2308 CckA, which is a component of an essential protein phosphorelay that regulates expression of genes required for growth, division, and intracellular survival; phosphoryl transfer initiates from the sensor kinase CckA and proceeds via the ChpT phosphotransferase to two regulatory substrates: the DNA-binding response regulator CtrA and the phospho-receiver protein CpdR. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), a REC signal receiver domain, and some contain PAS or PAS and GAF sensor domain(s).	8.04592e-18
NZ_CP040098.1\|WP_137423457.1\|923994_925263_+\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	6.44635e-63
NZ_CP040098.1\|WP_137425707.1\|920620_922585_-\|Cache-3/Cache-2-fusion-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.52646e-56
NZ_CP040098.1\|WP_137425709.1\|933016_934795_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.36333e-151
NZ_CP040098.1\|WP_170180184.1\|915634_916846_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	1.22239e-68
NZ_CP040098.1\|WP_137423464.1\|938230_938587_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	5.88465e-05
NZ_CP040098.1\|WP_137423451.1\|914483_915638_-\|response-regulator	gnl\|CDD\|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.59982e-48
NZ_CP040098.1\|WP_170180187.1\|941111_943064_-\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.83046e-37
NZ_CP040098.1\|WP_170180186.1\|928123_929839_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP040098.1\|WP_137423462.1\|934814_936641_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	7.79218e-169
NZ_CP040098.1\|WP_137423460.1\|931222_932020_-\|RimK-family-alpha-L-glutamate-ligase	gnl\|CDD\|223267	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis].	3.62747e-20
NZ_CP040098.1\|WP_137423466.1\|939299_940787_+\|cation:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	3.57093e-38
NZ_CP040098.1\|WP_137423461.1\|932370_932970_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.07904e-29

>NZ_CP040098.1|WP_170180186.1|928123_929839_+|DNA-repair-protein-RecN
MLAELIVHNFAIIRDLQVDFEPGLNVLTGETGAGKSILVGAVNLILGSRASQEMIRSGAEEATVEALFVFHDSPVLQERYRSLGLAPGEECVIRRVVSRTGRNRVFIDGQLVTLQQLQAFAEGLLSISGQHEHQLLLNPEVHLDLLDDFGKLGPHVTDVAEAFDRWTRTRDQWMRLRRHREELARQRDFLRFQLNELESASLKPAEDEKLQAEEKVLRHAETLYEAAKRAQRLLYSDQGAVLERLDQVGKDLAVLASIDPRQKTLAEHLDQATIHLEELHHALQEYAGSIAFDPHRLAEIQDRLALIQRLAKKYGPTVDHMLEKLEELRTALADEEEQEFREEALQKEMETLRSTYLSRARALSEERRRAASALSEAVRSVLASLDLPRARFDVRFDEERENLETVTDAAFTRKGVDRVEFLLSANPGEDLKPLARVASGGELSRILLALKSLLSLQGEAETLIFDEVDTGIGGRTAELVGRQLQQLARRHQVICITHLPQIACYGAHHYKVAKHTSGDETHTLITRLDGGERVEELARMLGGVSISEKTRAHAREWLEKAQRATCGEASS
>NZ_CP040098.1|WP_170180185.1|925282_927976_-|hypothetical-protein
MMKNWLQRVKESLVGACNGGEFSLAEDPYGQTLPERPRFLFRRLFERLVSKTSMPEDQQRQLENLGQQGTVVYAIKYRSQLDMVYAALRLYQLGLPTPTVTFDLRPYFWQGRWYGLKLMVHHFLKHFTRKGVPDPYGDGYYRRKIVENHAGIFFLLGEKGYYQRTVLVRHDPLEHLLDIQKDLDRPIYVVPLVLLYSRDPGRQRRGFWEIVLGNPEKPSFLRKIVSFIRSYANAVMEVGEPLNLREVLPELSEDRWERRKQIFQLRRSLIDATNEIRRAIVGPQIKSKLELKEIILHHPRLEAFMQRRARARGEELWKIRKEADGYLDEIAADYSYTLIQLGERVLTWMWNNLFDGIDVDVESLHRVKRSARHSTLVYVPCHKSHIDYLILSYVLLRNNLYSPFIAAGNNLAFWPLGPIFRRGGAFFIRRAFNGARFYSEVFSLYVKTMVQLGHNIEFFIEGGRSRTGKMVLPKLGLLAILIQAVEEGFCDDLVFVPTSICYDRIPEEEVYVEEISGGSKRAESIAQLVKARRFLKRRYGRVYVRFAEPMALQRYLERHRYDLKNLSSKMRHAMYRDFAYRIINSINQESLVTPHALVAAAFLSTTRRGVSKAELLGTCKAFMAYLEQRGIGFSRTFKSCEAVIDDTLRDLERSKTVSKLKAEDDDLEEEVFTMEDAKRLALEYYKNNIIHFLLPAAFVSTSILAQETFRFSLSQVLEDLAFMKDFFKYEFVYDMDLRDHQLAQDVLNVFEALGWIRHQEPREDYHYMMTHSGLHAAQAFRGLIRDYFEAYWVVLRSTRYLQKRSYTEKDFLKKIMDMGQKALKLELIQSPESISKITYANAIKYYLEKGIIAKSVDEGKKKDKVQERYQDAGDRRIIQMYSKQIARLLRAPHLALQ
>NZ_CP040098.1|WP_137423457.1|923994_925263_+|aminopeptidase-P-family-protein
MFQVPKEEIANRLVAFQAALVQHRIDAAVIRQNTDLYYLTGTVQDAHLIVPASGSPCFLVRRDVRRAEEQSPIRPVVPLTSIKELPDHLDRACGSRPPRTLGMELDVLPASTFFFYDEKVFPKDRIVDVGTLLRQVRMIKSDWEIEMMRRAAVISDAVARAVPEFLREGVSELELCIELEAVARKAGHLGFSRVRTFNLEIYFGHILSGPEAATSSYADSPTGGPGVSPALGQGSGTRVIGRGDLVSVDTMVNHHGYLNDQTRNFALEAPPAELADAHRLSLELHAWLREAARPGAVTGELYREALEWAASRPLSQYFMGSEDASRVSFLAHGLGLEVDEFPFIARGQKTMLREGMTFAFEPKYIIPGIGIAGIENTYRVTARGLESLNLSGEQLVVVQTGPASGRSGATGGQRSAARPPGE
>NZ_CP040098.1|WP_137423456.1|922958_923672_+|HAD-family-phosphatase
MACAPRLPDAVIFDFDGVLVDSEPYHYRAFQEVLAPLGLGHSYATYVDRYIGYDDRDALREIFRDAGRDLDPPTLRALIAAKQKAFQTIVSAGVKAFPGVHPLIRSLLGEKIPLAIASGSTRQEIASMLDALGLHDAFPVIVTADDVERSKPDPQTYLLAVCRLKSHNRRPDLRPEACAVIEDTPEGIRAARDAGLSVIAVGHSHPVETLREAHLTVPALADIDFRTLELVLERRTA
>NZ_CP040098.1|WP_137425707.1|920620_922585_-|Cache-3/Cache-2-fusion-domain-containing-protein
MRILPLLRTTRSKLIVSFLGVSFLVGAVSLVVGGHLLYRTFMGEATNRVRQDLNAARHMYEDRCRRVELALAVTTLGRGFREALQPERSRELTERLARVAEWAGLDFAGVADTRGRAMVRLSGESVPEDAVRCAPNPLAELSLKTNRGVSGTLVLSEAWLRCEDPVLAERARIQLVPTPPAGSGEDTILTSGMVLAGAVPIREEGAVIGVLYGGVLLNRSTEIVDTVRNTVFKNERYRGREIGTATIFFKDIRIATNVLLENGARALGTRVSSEVAERVLGKDLNWADRAFVVNDWYLTAYEPIEDVFGERVGMLYVGVLEQPYADVRRKALTVFTVLSLLGITLAVGLGWFLEKKIMRPIHLLTDAADAVSRGNLSPDLGSISESEVGVLQKTFESMLASIRERESRQREESASMLALAQRQASVGRLAAGVAHEINNPLTGVLAFSHMLLDRHDLDEEARESLQMIAEATERVRRIVRGLLDFSRRTDIDPEETAIEGLVRSTLTLVENQALVKGVELQVEAAADLPLVTVDPGQIRSVLVNLVINALDATDPGGRIRVSVRSVPAASEGEGRGSGVEIAVSDTGVGIAPENIEKIFDPFYTTKEIGKGTGLGLSVSYGIVARHGGKITVESEVGRGSTFKVWLPAHRREEA
>NZ_CP040098.1|WP_137423455.1|919909_920467_-|hypothetical-protein
MASYQVIADFTLSEGKLLRVLEPSRMDRIVVVFLAKAAGVKLKADDIYSGKLYTTPFGTISVESDGLVLDANPFNAREGKALIGRLARFARIAAMPEYAERVKLVLSEKFEILNEIRGEKALLMLLVLRGSDGEVFGVAVRTDGLKALAIKGKSPDNEFVVGLYDCLRKAGLADGLSFAKRSSPA
>NZ_CP040098.1|WP_137423454.1|919660_919861_-|hypothetical-protein
MSTGHKPGRYVVLCVADTGEGMDAETLSRIFEPFFTTKETGPGAGRSPCFPPPDLKTGRTPTYRKI
>NZ_CP040098.1|WP_137423453.1|916850_919283_-|PAS-domain-S-box-protein
MEKGFAEARRTEQILIVDDEAGIRNLLRELLQKHGYRCRTAADAREARAILEAEPFELVISDVNMPGESGLSLVRHVFENCPDTAAVMVSVMDDPQVAREAFGLGIYGYVVKPFDLECVLIVVENALRRRRLEIENRLHRETLEKLVAERTKQLQVSCERYRELVETLPGVVYTGATDWAIVFVDEKVRDLTGYSAREFLSGEVRWPDIILPEDLPGAKKAFRDALTGCLQFVREYRIRTRSGDAAWIQDRGKIVCREEGKVDHVSGFLFDITERKRTADAIVQAKEEWENTFDAVPDLIAILDADHRIVRMNRSMSKRLGVTLEEAVGRHCHELVHGLSEPILGCPHGRMLNSGEEYSAEIYDERLKGWFHVSCSPLHAPDGRMIGGVHVAREVTALKETARALRRAHAELSQLIEAISSVLITLDSKNRIVRWNSHAERVFGFTADQVRGKRLEDCDLRWQWGRVCDILARCRDSRAPQRLEEVRFTRPNGKQGFLGMVFTPIPREGEEGSYVLIMAADITHRKIMESQLAQAQKLEAIGQLAAGIAHEINTPTQYVGDNTRFLKDAFDEILSIVRGYGALLERVKSEQPDHPDVRAIEELIQEVDLDYLMEEIPRAIEQSLDGVGRVAKIVLAMKEFSHPGVEEKVAVDINKAIENTVTVAHNEWKYVAELVTDFDRGMPNVPCLPGELNQVFLNIIVNAAQAIAEKTGDRPEAKGTITIRTRKNGGNCEIAVTDTGGGIPEEIQSRVFDPFFTTKEVGKGTGQGLAISHDVVVNKHGGTITFESEPGVGTTFLIQLPLDDSNAEKG
>NZ_CP040098.1|WP_170180184.1|915634_916846_-|HDOD-domain-containing-protein
MVKTVLFVDDEPKVLEGLHRMLRSMRREWRMGFVTSAMEALKVLDKEAVDVVVTDMRMPGMNGVEFLTQVMKRHPDIVRIILSGHSDREMIMKSVPVAHQYLAKPCDAEVLKSCVARACALRELLADPLLKKVVSRMGCLPSLPSLYAEITEELRSPDASIQRVGEIISKDVAMTAKILQLVNSAFFGLRRRVANPAQAVNFLGLETIKSLVFAVQIFSQFEGRKLHGFSLEALWDHSMTVAAFARMIAREEEAEPMVIEAAFMAGLLHDLGKLVWVINFGEAYMSVLAEAQQRRIPVQMIEREHFGTSHGEVGAYLMGLWGLPDNMVEAIAYHHSPGTLPSPGFSALTAVHAADILTHDLQKNSPVFIQQEVDSDYVEAAGVADRLPHWRKLCENSMAGEEL
>NZ_CP040098.1|WP_137423451.1|914483_915638_-|response-regulator
MKDRVLFVDDESNVLEAFKRQFRKLFDMEVAPSGKEGLQRIAGGNGFAVIVSDFKMPVMDGVQFLSRAKEIAPESVRIMLTGYADVKTAIEAVNSGHIFRFLTKPCPPELLAQAIAAGVKQYRLIHAEKELLEQTLKGAVKVLTEVLALTNQEAFGRSTRVTRYVKKIAARLKSSNTWKLETAAMLSQIGCITLPEEILQKFCRGEALSVDEEAVYRMHPAVAADLLEKIPRMSEVAEIVACQENRFDGAGKAPVPRKGEEIPLGARILKVALDFDILETAGRSQRDALQEIKGRNGVYDPAVVAALEDVIRMDSGYARRSCKLTELKENMIFAADVRAMDGRLLITSGNVATRPLLQRLNNFSQTMKIRQPVEVLVPVGDWVF
>NZ_CP040098.1|WP_137425708.1|930470_931193_-|NAD-dependent-deacylase
MTQLKERLRQAHHVVALTGAGVSAESGVPTFRGEGGLWRSHRAVDLATPEAFARDPRLVWAFYNWRRELLGPLSPNPGHRALAAMERRFPRFTLVTQNIDNLHQEAGSRNVLELHGNIWRVRCTRCAVTSEDRRVPLPELPTCGVCGGLLRPDVVWFGEALDPEVLERVYEGLRSCDLMLVIGTSAVVQPAASMGLYARKHGAFVAEINLEPTPFSSMLDVSLLGKAGEILPRLVEPEAA
>NZ_CP040098.1|WP_137423460.1|931222_932020_-|RimK-family-alpha-L-glutamate-ligase
MKRGGSGSGREKVSLGKRPRGCPSFRCLGVRPNWEDYSGEERDLIRGAAKIYYPSRLYETFFLSTGKDVFPRNYYEFMGNKIRQTGLFQLLDVSHPRTKVYYGRRRSPCILSDFTYPFIAKDPLGSSQGSGVWRIENRKDLERYLARCRPAYIQEYLPIDRDLRVVLIAGRVVHAYWRVAPPGEFRNNVSLGASLVFDAIPEDALDFARDVACRCGFGEVGLDICRHDGRYYVLEANMVYGLEGFHRRCLNIHEILKRLDDGGTL
>NZ_CP040098.1|WP_137423461.1|932370_932970_+|flavodoxin-family-protein
MTRIVAIYGSPRRNGNTSMLLRSAVSAARDEGAVVEEFVLRDLRISPCLEIYACKEKGECAIQDDFQQVARSMLNAQGIMLASPIFFYTVSAHTKAFMDRCQSLWVKRYWIDRIPFGIRHYARKGLFVSVGATTGKRLFDGTLLTVRYFFDAVDTELWGTLLYRELDLEGDVLKHPDYLTSAYLKGREMAMTLKEADSG
>NZ_CP040098.1|WP_137425709.1|933016_934795_+|ABC-transporter-ATP-binding-protein
MLTDSDRGRHRLRRALGLLSPFFRRYGLRLTAGCLALITVDFIQLWIPRIIKSAVDSLQEGSASSESLLHHGGLILLLSIAVAALRFLWRYFILGFSRYLERDIRNSMVSHVITLDRTFFQKRPAGEIMALSSNDLASVQLACGMGLVAFTDAVVMTVAALAFMAYIHPGLTAIAMAPMPVLAVLTRFLAARLHHRFRRVQELFSHLTEFTRNCLASLRLIKAYTQERVQLERFDRLGRAYIRNNLKLAAIQGTLFPMSGFIGNMSLLLVLFFGGRLTIRETITAGDFVAFINYLFMLTWPMMALGWVANLFQRGVTSLERIRDLLEERPALRDPLHPVTLPVVRGQLRIRNLTFTYPGTREPALNEVSLEAGRGLLGIVGRTGSGKSTLCRLLARLYPIPDGTYYVDGIDVNRLSVDAVRRQIAYVPQNVILFSESIAQNIALGRPEASREEIESVARAAAIHEEIMAMEEGYDTRVGERGVRLSGGQRQRIALARALLTRRPILIIDDGLSAVDMETEYAIVHSLRSYLEGRTCIIVSHRVAPLSDADEIVILEAGRVAARGTHRRLLETNGFYAAIARHQAARRTADGA
>NZ_CP040098.1|WP_137423462.1|934814_936641_+|ABC-transporter-ATP-binding-protein
MHYGYGYFEEERLGQIGDVGLWRRILSYVKPYWKAVLAAILLALLISAAALSLPYLVRIGIDAYIVNADPTMEERLRGLAHLALIFAALMLLEFTTNFLQVMLLERTGQQVMHEIRQDLFGHVLDLDLAFFNRNPVGKLVTRLTNDVQNMHEMFTSVIVTLFNDAAKIIAILAIMFWMHWELTLILSLLLPVMVLNAVVFSRYAREAFRAIRTQLARINAFLEEVLSGITILQIFSRERDTETRFRQLNQNYLDATLHQIRVFGVFVPLIEVLSSTATAVIIWYGGREILHGRMTLGILVAFLSYMRLFFQPLRELSAKYSIIQSAMASAERIFQLLETQGTVLPPKTPMTLPDLRGAITFRDVTFGYKPSQPVVDRLNFQVAPGETLAVVGATGAGKTTLINLLERFYDPDAGEISIDGADLKKLNPAWLRRQIGLVMQDIFIVPGTLKENILLDRSLTDDALNRIIHEAQLTGLVNRLPQGPETRIGEGGIDLSAGEKQLLAFARVLARNPRILVLDEATSNVDSETEMLIEKAIASTLAGRTSIVIAHRLSTIRRADRILVMNRGRIVEEGTHTALMAQQGLYHHLQSLQFRTADLEPGAAAREP
>NZ_CP040098.1|WP_137423463.1|936910_938032_+|metallophosphoesterase
MLRFLLFFLAIYSAMHALFFLRVHVLLPERRSAQWGFALFLFLMILAPILCRLMERAGHDLAARITATVGYVWMGFIFVSFWFCLLMTLYDALAWTGARLLPHAPPLLTGKTPVLAMLAATLLLCGYGAFEAGRIRTERVTLTTTKLPAHIPRLTIAQITDVHLGMMARSGRLKTILEKVDTLDPDILVSTGDLVDGSLDHLPELLELLQTVRPRYGKFAVTGNHEVYSGLSKAAAFTREAGFTVLRNSTSDRETPINIVGVDDAPVNLPEREVPLLRIARNGKFTLYLKHRPLICPETTGLFDLQLSGHTHAGQMFPFNFVVALQYPLLKGWFPLENGSTLYTSRGTGFWGPPMRLLAPPEITLIELVRGSS
>NZ_CP040098.1|WP_137423464.1|938230_938587_+|winged-helix-turn-helix-transcriptional-regulator
MRCDKCGATFPPEDALHHAGQTLCEDCYLDLMATPKACDPWAVHSAKRTAEQQTILTPVQEKILALIRENGPLTAQEICEKAGLSENEFQRNFATLRHMELARAFKAEDGVRYTLFDK
>NZ_CP040098.1|WP_137423465.1|938680_939025_+|DUF4405-domain-containing-protein
MEKNTWKFVVNTLLFVDFCTLAAIGLLLGLVVPKGGGRQGTNSFLGLQRHDWGDIHFTLALLFLGLLVVHIWNNWTWVVQSAKRIFGELSSKALCMIAGAWIPLLLILWLAARF
>NZ_CP040098.1|WP_137423466.1|939299_940787_+|cation:proton-antiporter
MAVSLAIIIILGLAADYLFRKMKLPGLVGMLLVGVGAGPYVLGLIRPEMMEVSGDLRKIALIVILLRAGFELHRDTLNRVGRAALLMSAVPAVFEIAGVMLVAPRWLGLSLIEAAILGSILAAVSPAVVVPLMIDFMDRGRGVKKGIPTLVLAASSVDDVFVIVLFSIFLGMYGGGEVHVCAKLAEIPVSIGLGIFMGLLPGYLLYRLFVTYDWRPPKRTLLVLGVSIALTWLESALEPWVHAASLLGIMAIGFIILEKSEPIAHLISQELKKLWVFAELILFVLVGAQVNIHVAWQAGLAGTAVIVVGLLFRSAGVYLSLLGTALHWKEKLFCVVAYVPKATVQAAIGAVPLAAGVASGEVILAVAVLSILLTAPLGAVGITLLGERILDRSELSIYKFRELRERLALPRVGERVRSKRYGTVWKVIEEKETWLSSSEAGGSHGGHDGRLVPAIHIRFWREDTSKGPGTGKTMTYLYSIADPSFQEHWEILYDW
>NZ_CP040098.1|WP_170180187.1|941111_943064_-|PAS-domain-S-box-protein
MNETDSMEGSKIDRAQAVRGRGLFPSFRKLCEKRRATAVGLLTAFCIGITAYFHGVLHAEAIFVHFYYLPIVLAALFWGKKGVGIALFLSAYVLWSHRFVWDRPLNTEDWVRVSLLVGIGFAVAALSERLKGVQRELVLSRTRYSEMFRHMSEGVAVYKTVDDGRSFVTVDMNEAAELLDGVSKKEVLGKDVTAVFPSIETSGLLDVFRRVWESGKPQSHPVRFYTGRRMSGWRENYVYRLPSGEVVAVYTDRSREKLAEEKLLELASIVEFSNDAILSIDLNGTVRSWNPAAERIYGYSAEEMVGRSILTLVPPDYHEEVLGDLERIKNGVRLEHHESVRITRDGRHLHVSVTISPVKDAEGRIVGISNIARDITQQKQMAAALERARVQLERRVEERTRELAQANEELRAEIARREEVEEALRESSEKIKFFAYSVAHDLKSPAIGIYGLANLLVRKYSDRLDEKGRAVCSQILKASEQVAALVDKINLFIASKESPLNVESLRVKELFEMIREEFSLQPGLRRIGWCEPDTEAEILADRLAMIRIFRNLVDNALKYGGESLTEIRLSYQASAGLHVLTVADNGAGIRGENAERIFGLFHREGNTGDTQGTGLGLAIVKELAERHGGRVWVESQEDRGTTFFVALPKD

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Crispr_ID: NZ_CP040098_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_14

994076-994206

Orphan

Consensus_repeat	Method
ATCGAACATCGAACGTTCAACATCGAATGAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_14

>merge|NZ_CP040098|14|994076-994206|CRISPRCasFinder
ATTGAACATCGAATATCGAACATCGAACGTTCAACATCGAATGAAAAACCAGGTTGCATTTATGCCATTGGGTTGTTTTTAAAGATGAACGTCCAACATCGAACATCGAACGTTCAACATCGAATGAAAAA

>NZ_CP040098|14|14|994076-994206|CRISPRCasFinder
ATTGAACATCGAATATCGAACATCGAACGTTCAA	CATCGAATGAAAAACCAGGTTGCATTTATGCCATTGGGTTGTTTTTAAAGATGAACGTCCAAC
ATCGAACATCGAACGTTCAACATCGAATGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425713.1\|988267_989917_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP040098.1\|WP_137423504.1\|986889_987255_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NZ_CP040098.1\|WP_137423331.1\|1002057_1002843_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP040098.1\|WP_137423500.1\|983204_983765_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341362
NZ_CP040098.1\|WP_170180193.1\|1004039_1006970_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375045
NZ_CP040098.1\|WP_137423508.1\|993445_993946_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NZ_CP040098.1\|WP_137423505.1\|987561_988167_+\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|153419
NZ_CP040098.1\|WP_137423515.1\|1000527_1000782_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239154
NZ_CP040098.1\|WP_137423503.1\|985056_986493_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP040098.1\|WP_137423513.1\|998395_998767_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224916
NZ_CP040098.1\|WP_137423502.1\|984674_985025_-\|dinitrogenase-iron-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423511.1\|996014_996284_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235255
NZ_CP040098.1\|WP_137423518.1\|1007245_1009162_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP040098.1\|WP_137423512.1\|996735_998373_+\|trehalose-binding-protein	unknown	unknown	gnl\|CDD\|239599
NZ_CP040098.1\|WP_137423507.1\|990647_993404_-\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NZ_CP040098.1\|WP_137423332.1\|1000879_1002067_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP040098.1\|WP_137423501.1\|983947_984445_-\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP040098.1\|WP_170180192.1\|998850_1000479_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|130652
NZ_CP040098.1\|WP_137423510.1\|994665_996018_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP040098.1\|WP_170180191.1\|989960_990515_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425713.1\|988267_989917_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP040098.1\|WP_137423504.1\|986889_987255_-\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	3.04654e-24
NZ_CP040098.1\|WP_137423331.1\|1002057_1002843_+\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.90147e-94
NZ_CP040098.1\|WP_137423500.1\|983204_983765_-\|CBS-domain-containing-protein	gnl\|CDD\|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	7.42862e-06
NZ_CP040098.1\|WP_170180193.1\|1004039_1006970_-\|hypothetical-protein	gnl\|CDD\|375045	pfam17201, Cache_3-Cache_2, Cache 3/Cache 2 fusion domain. The Cache_3-Cache_2 domain likely originated as a fusion of sCache_3 and sCache_2 domains.	4.0778e-65
NZ_CP040098.1\|WP_137423508.1\|993445_993946_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.35314e-19
NZ_CP040098.1\|WP_137423505.1\|987561_988167_+\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|153419	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and some eubacteria while they are encoded as bifunctional enzymes in other eubacteria, such that the enzyme is fused to histidinol-phosphate phosphatase, the penultimate enzyme of the histidine biosynthesis pathway. The histidine biosynthesis pathway is a potential target for development of herbicides, and IGPD is a target for the triazole phosphonate herbicides.	2.70238e-108
NZ_CP040098.1\|WP_137423515.1\|1000527_1000782_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239154	cd02753, MopB_Formate-Dh-H, Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	1.36366e-42
NZ_CP040098.1\|WP_137423503.1\|985056_986493_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	2.02439e-150
NZ_CP040098.1\|WP_137423513.1\|998395_998767_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|224916	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only].	8.35774e-17
NZ_CP040098.1\|WP_137423510.1\|994665_996018_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.56049e-55
NZ_CP040098.1\|WP_137423518.1\|1007245_1009162_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.49138e-41
NZ_CP040098.1\|WP_137423512.1\|996735_998373_+\|trehalose-binding-protein	gnl\|CDD\|239599	cd03522, MoeA_like, MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.	6.09382e-127
NZ_CP040098.1\|WP_137423507.1\|990647_993404_-\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP040098.1\|WP_137423332.1\|1000879_1002067_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.2526e-38
NZ_CP040098.1\|WP_137423501.1\|983947_984445_-\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	5.8941e-14
NZ_CP040098.1\|WP_170180192.1\|998850_1000479_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|130652	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type. This model describes a subset of formate dehydrogenase alpha chains found mainly archaea but also in alpha and gamma proteobacteria and a small number of gram positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized). This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.	0
NZ_CP040098.1\|WP_137423511.1\|996014_996284_-\|hypothetical-protein	gnl\|CDD\|235255	PRK04204, PRK04204, RNA 3'-terminal phosphate cyclase.	9.9657e-20
NZ_CP040098.1\|WP_170180191.1\|989960_990515_-\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.78173e-31

>NZ_CP040098.1|WP_137423508.1|993445_993946_-|NUDIX-hydrolase
MKFCPQCAAPLVEKVIDGRNRLACSDSRCGYVFWNNPTPVVAAVVEWNGSVILVRSKGWPEKFFGVVAGFLEAGETPEEGVLREVREELGLEGRIVDFLGIYSFFERNQVIFAYHVSGEGEIVLGDELAEVKALPPERVRPWEKGTGPAVKEFLRRRGVSVRQGGA
>NZ_CP040098.1|WP_137423507.1|990647_993404_-|aconitate-hydratase-AcnA
MRKTEWMGRLETDRQAITFFDIGKLERDGLADVGRLPFSIKILLENVLRKWDGTVVTEEDVLEVAHWRKRYANPVEIPFHPARVLMQDFTGVPAVVDIAVMRDAVKDRGGDPRRINPLVPVDLVIDHSVQVDAYGTERAVEINVAREYERNRERYALLKWAQRNFDTLRVVPPRSGICHQVNLEYLARVMIVEPTGEQGERLAYPDTLVGTDSHTTMVNGIGVVGWGVGGIEAEAVMLGEPYTMSLPEVIGVRLVGGLRPGVTATDLVLRVTEMLRAHNVVEKFVEFFGPGLKGLSLPDRATVANMAPEYGATLGYFPIDRVTVDYLRATGREAQADLAAACAEALGLFASGTEEPEYTDVLELDLTTVEPSVAGPARPQDRVELRNLKERFAQVLGCHYEPDATVEQVSAFINESGCRTRRPRTCTPLSQRFFDVEVNGRLSRIGDGSVVIAAITSCTNTSNPSVMIGAGLIARNAVKRGLTVPAHVKTSLAPGSKVVMDYLEEAGLTPYLQALGFHCVGFGCTTCIGNSGPLHPALEEVIERENLNVVSVLSGNRNFEARIHQRVRSNYLASPMLVVAFALAGRVDVDFTREPVALDPNGEPVTLDELWPGEDEIRRMAAAHCKSAFFQKEYAAIFDGDAFWQGLQAEAGTTFAWDPASTYIRKPPYFDDWSPETKPLQDIRGARALLVLGDAVTTDHISPAGAIPEHYPAGKYLVSKGVKPPNFNSYGSRRGNHEVMMRGTFGNIRIKNRLAGGKEGSFTRKFPEGEEMFVFDAAMAYAREGVPLVVLAGSEYGTGSSRDWAAKGTALLGVRAVIARSFERIHRSNLVGMGVLPLVFKSGESIESLGLDGTEVFTISGLDDLAPRKMLRVEAEKPDGSVVSFDAVARLDTDVDVAYFRHGGVLAYVLRKIHGGGA
>NZ_CP040098.1|WP_170180191.1|989960_990515_-|flavin-reductase-family-protein
MELAPEKFKQFFPLPVTVITTRDGRGVANAAPYSCVMPILRPYPLIALASALPRHTLQNIRETGQFVVNVIGRPSFRDAMRTARPYPPDVDELERVGLETVPSKRVSPPRIAAAIGWVEATLEREVTDERYALLVGRILCSEINDRYLEDGRLKELPLTLLAPHFRMLGDVLADREELESELTL
>NZ_CP040098.1|WP_137425713.1|988267_989917_+|energy-dependent-translational-throttle-protein-EttA
MVRVGKFYQKRPVLKDISLSFFYGAKIGVLGLNGSGKSTLLRIIAGVDKDFVGETVLSPGQTIGFLEQEPVLDDSKQVRDIAREGVQQTVDLMDEFNRINERFAEPLSDDEMDRLIERQAAVQERLDALDAWDLDSRLEMAMDALRCPPGDTPVRVLSGGERRRVALCRLLLQQPDILLLDEPTNHLDAESVAWLEQHLRRYPGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKEKRLANEEKAASERRKTLQRELEWIHTPPKGRHAKARARIKAYEQLLAKESERRAEDLEIYIPPGPRLGKTVIEAESVSKAYGDRLLVEDLSFLVPPGAIVGVIGPNGAGKTTLFRMITGQEEATSGTIRVGDSVKLAYVDQSRDALDPDQTVWEAVSDGKDKILLGSREVNSRAYVARFNFSGADQQKKVGRLSGGERNRVHLARMLKEGANVLLLDEPTNDLDVNTLRALEEALLNFAGCALVISHDRWFLDRVATHILAFEGESRVVWFDGNYSDYEADRRARLGEAAAQPHRIKYRHLTR
>NZ_CP040098.1|WP_137423505.1|987561_988167_+|imidazoleglycerol-phosphate-dehydratase-HisB
MTSDGRFFEVERTTRETSIRLKFTLDGTGRTDITSGIPFLDHMLTLFAVHGFFDLEIQATGDHADDRMDCHHAAEDLGICLGKALEGALGDRKGIRRYGEASVPMDETLAHVALDLSRRPFLVYHTPKLIERLGRFETELVPEFLRAFCQHGGVTLHVGVPYGENSHHILEAVFKAFGRALDQAAAPDPRRAGVPSSKGSL
>NZ_CP040098.1|WP_137423504.1|986889_987255_-|four-helix-bundle-protein
MKKQTYDLEERLLEYSVRIIKIVAQLPNTRTGNHVATQLLRSGTSPYPNHGEAQAAESPKDFIHKLRISLKELRETQRWLKLIQRVPLIKKPELLDDILKETEELIKIFVTSIKTAEKKGK
>NZ_CP040098.1|WP_137423503.1|985056_986493_-|sigma-54-interacting-transcriptional-regulator
MTERLGSVKRTDPSVVRLFGKPVAFSPLLDEIPVGLVILDLDRRVAMMNRSAEALTGMSRDEARGLPCRHVVRSNLCLQRCPLPEMSSESEPVCLEGDIISRDRERIPVRTTFAPLEDPEGRLVGFLEALEDLRMLQALDASKGRVYSFGQIIGRSSQMQRIYEILPGVAQTDSSVLVTGETGTGKDLLAEAIHQASGRAKGPFVKVNCGALPESLLESELFGHEKGAFTGAGESKPGRFRLAHNGTLFLTEIGDLPLTLQVKLLTFLDDHVIYPLGSTKGVRVDVRIIAATHRDLKQMVREGRFREDLLFRLNVVRLHIPPLRERGGDVRLLLDHFLRAFTSQFQKPIRGFTDEALERLMRHPYPGNVRELRNIVEYAVNLCNRDRVGPDHLPPYLLEEPEAPAAKEAGGGEQPPVREQPAGGPGRVSESTTWMELERRMILEALLKAKGRRSRAAEILGWGRSTLWRKMKRHGIDG
>NZ_CP040098.1|WP_137423502.1|984674_985025_-|dinitrogenase-iron-molybdenum-cofactor-biosynthesis-protein
MAHKVVIPLNGEEVAPRFDLAAEVWIGRLNAEGGLEEERIVVLPQASAEALCHLIVSERAKTVICGGIEELYYDYLVWKKVAVIDSVVGRRAEVFRAFLEGRLESGTVLFERKVRR
>NZ_CP040098.1|WP_137423501.1|983947_984445_-|response-regulator
MPIEDSRVAKLVLYEEDGPFRMNLANYLRRNGLQVTEADNALEALDAAGDAQVVLIGLKEDGAEGLALLERIKERRPRAAVILLVPSGQAALSIEGMKRGAFDDLMIPFDLSLLLRKVIEAGAVAHEDRMGTTTQGGEPDSAEGPGKPRQKKKKARRRTETRRDR
>NZ_CP040098.1|WP_137423500.1|983204_983765_-|CBS-domain-containing-protein
METVKVKALMVPLDHYARVPEDATLAQAVLALEEVHEKFDDHYYKHRAVLVHDAEGRVIGKVGQLDVLKGLEPRFKEVGDLSMLSRFGFGSEFVKMMSRQFSLMEKPLNDICRKAAKVKVRDIMHTLTGGEYVDEEASVNEAIKQLVLGQHHSLLVTRGEEIVGVLRLSDVFLEVCRLIKACELEG
>NZ_CP040098.1|WP_137423510.1|994665_996018_+|YihY/virulence-factor-BrkB-family-protein
MVSKFGDIKRFLQSDLWNLRLADLPPARAALLRALRIAAIVGRRFTRDQCHLRASALTLFTLLSIVPMLAMAFGIAKGFGLQNAIERETLRRLAGQEEVARWIMDFAHTLLETTRGGLIAGIGVVALFWTVLKVLQNIEISLNAIWKIERHRPFSRRVSDYLSFMLIAPILLVVSSGLTVMVTQQVGFMSERFGIVSYFESFILKALRLVPYLVLWALFTFLYIFMPNTKVKATSAALGGVLAGTLYQIFQAAYIYFQVGMSNYNAVYGSFAALPLFLLWLQASWMIVLLGAEICYAHQNTALFECEPQIRRLSREARNLAALSVMRYLARRFHEGERGCSEEDLVRAEGMPVLLIRQTLTELEKSGLVARMASPEDNGDSSVSHEERLYQPAVPVTQLTIRRVLDHLEQNGESRVPVLNPAEIEDLAQRLKALHEAAEKSPANSRLLDL
>NZ_CP040098.1|WP_137423511.1|996014_996284_-|hypothetical-protein
MISIDGGLKSGSGTLVRDAVALCALTGETLHLFNIRARRPRPGLRPQHLSAVRAAAGAADGASKPPAASVLFWLGRFFFTRCEGIPKRS
>NZ_CP040098.1|WP_137423512.1|996735_998373_+|trehalose-binding-protein
MANIGVYSYEEYLRIVESFHGSVAPGLVVGGFMVDLAMKRMPGGILFDAICETTSCLPDAVQLLTPCTIGNGWLRVFNLGRFALSLYEKYEGEGIRVFVDAEKLGAWPEIKSWLFKLKPKAEQDKDRLMSEIEGAGHSICGVQSVKVQTQFLGKKNRGPIATCILCHEPYPARDGAICRACQGETPYIPSASSDDRRDPLPPLRAVPTEKAVGKRALHDMTLIIPGVTKGAAFTQGQQITIGDLCRLQQMGRSRVYVQEENHIHPEWVHENDAALAFAKTMAGEGVTYDEHPREGKINLIADRDGLFVVQEDRLEQFNMIRGVMCASRRACVVVKRDRPVAATRAIPLLLPRTDFEKALTILDDGPIFKVLPLRKARVGVLVTGTEVFQGLIRDKFVPIITSKVEKYGCGVVRSLIVPDDRSAIADGIGQMILQSGVDLIITTAGLSVDPDDVTRQGLVDAGVTNMLYGAPILPGAMTLIARIGTVQVMGVPACALYFKTTSLDLLLPRMLANLEITRRDLARLSHGAFCLACKTCTFPKCPFGG
>NZ_CP040098.1|WP_137423513.1|998395_998767_+|LysR-family-transcriptional-regulator
MSENIPTIRLNLWLETADGLYFGLGRAMLLANIQKCGSLRKAADEMGMSYRAAWGKIKKCEEIIGMKLIYQSGSKSEGYRLTDAGKLFMESYFAWFDHVEKEALKKARELMPVMVRSYKEAVE
>NZ_CP040098.1|WP_170180192.1|998850_1000479_-|molybdopterin-dependent-oxidoreductase
MTNSFDELAEAECLFVIGSNTTVAHPIVATRLFRAKAKGGKLIVADPRKSHIARHANIHVQHRLGTDVALINGMMHIIHKNGWHDSKFIEERTEGFEVLVETIEKYPPERVSQMTGIDIGTLTETARLYAGSKSSSIVYCLGITQHSTAVDNVMSLANLSMLCGQIGRPSTGVNPLRGQNNVQGACDMGGLPNVFPGYQAVTNPEIRRKFELAWNVRLPAQNGITIMEMMQGCIDGQVKAMVVLGENPVVSDPDSNHVKHALQSVEFFMAMDIFPTPTTELAHLVLPAASFAETDGTFTNSERRVQRVRQAIPPLAGKTNWQVIQELSTRTGYPMGYGSAEEIFNEMASLTPSYAGISYSRLDPSGLCWPCPTPEHPGTPILHIGRFSRGRGLFHGIEYKPPAETPDEAFPFWMTTGTEYAHYLTGTMTRRCAFLDREMPELITDLHPEDADRLGVLNGDYIRVTSRRGTLESRVRITDAVKAGMIFMPMHFEEAAANLLTNPALDPISKTPEYKVCAVRVEKAAACPREMESEPAALTVER
>NZ_CP040098.1|WP_137423515.1|1000527_1000782_-|molybdopterin-dependent-oxidoreductase
MVTVQRFDRLKTPLMRTGLGFREVTWGEALDYAARELGRIKDTYGPDSVGFLTSARCTNEENYLLQKFARSAVGTNNIDHCARL
>NZ_CP040098.1|WP_137423332.1|1000879_1002067_+|IS21-family-transposase
MLKKEDWMEIRAQVEKGVYKKDIAESLGVHPKTISRALSRGGVPSGKRPGARVSKLDPFKPLIDQLLRDGVWNAMVILREIEQRGYTGGTTILREYISPRRPMRQSRATVRFETDPGVQMQNDWGELTTEVAEIPQKVYFSVNTLGFSRRLFFWCAPRNDAEHTYEGIIRAFEYFGGVVIEVLVDNQKATVIVHRIGESVRFNERFIDLAGHYGFTPRACRPRRARTKGKDERMVGYIKHNFFVRYRKFESFAQMNALAEKWLTEETDQRLHGTVKEIVAERFSREAPHLRPLPALRYDTSYLEHRCVHWDGFIDVLGNRYSVPSQLCGQTVRVRIGLDGTLRVYAEETLVAEHTLRSAAEGWGSVAAHHAQLWQEALQVERRDLSIYEEASRWS
>NZ_CP040098.1|WP_137423331.1|1002057_1002843_+|ATP-binding-protein
MELAGLLEKMKMEHLLSQIDSVCEQASKRDLSYKDFLAEALQAEWRGRHGKAVEARLKMARFPWVKTLEQFDFSFQPSIDRKVIRELSGLSFVDRAENVILLGPPGVGKTHLSISLGVKAVEAGYRVLFLTLESMLTRLTRARMENRVERQLQQFVYPRVLIIDEMGYLPMSRDEAGLFFRLLTRRYEKASLIITSNKSFVDWGEIFNDQVLATAILDRLLHHCTTLNIKGDSFRLKEKRKAGLVGAGPRTAFPTEQKASE
>NZ_CP040098.1|WP_170180193.1|1004039_1006970_-|hypothetical-protein
MRLTFKAKLVVLCVALVAIPLIASTAINTALSTSQSKHLSDFLSTSLKESSLNFLAALVEADHVFVNDIVTRTEEDALRLAASANLKEYIHALSGTDENLNAIFRDQVMAEMEGLVQNLRTQHAYVLKQLNMALNLARTSVGRSDLSTITHTWHAVNQFTQESRSVELPLLQLGAQILYPTEAFDQQVPVVDDVKKITGSTCTIFQKMNPQGDMLRVATNVENSAGARAVGTYIPAVNPDGSPNPIVATVLQGKTFQGRAFVVDDWYQTIYEPLRNASDEIIGMLYVGDRIKDLAGIQSELLKRRLGREGHFFVMDSSGSVVIHPESSLIGRNAVESFPDSPMGKVLTLIREESTGLLEHQDEKGRKGFLAYHYFKEWDWVVCAAGRWDDMAVGVRENAFRAFREEMEALWNVATVQTADGERPMYTQVRFLDATGSEILKMVEGRFSDDLGSRAEEAWFLSAVKAESVVNSGVEIARNTGKPEMRAVVPVREYGTFQGAVVINLDWSVVWQIMKAEKHGQSGYSWVCNDRGVLISHPKYSLSDGVNVSESSYGDLARLVKDGLSGNAGTGGYFFEGEDKFMAYKPLKVGTGHYLVTTSMAQDELLAMVRQVTERLNRDRLKSMQWAAAVVLSMVGVGIVAAFLFGRGIANSISRAVEGLTEGADQVAAASGQVSASSQQLSEGASQQAASLEESSSAIEEMASMTRQNADNAKEAAQIATQSGQKFTNASTALQSLTQSMDEISKASEETQKIIKTIDEIAFQTNLLSLNAAVEAARAGEAGAGFAVVADEVRNLALRSAEAARNTAVIIDGTVKRIREGSTLVSNVNGSFKEVKTDSEKMAELIAEIAAASQEQAEGIEQINRAILEMDQVVQQNAANAEETAAASEELTAQANQLREYVSLLVQIVGQGTRKSERAAKEPERGGSGMKTPAAEVPLRAGGGGKGDGRDRPARRKTGSSKAEEVIPFEEDFSDF
>NZ_CP040098.1|WP_137423518.1|1007245_1009162_+|methyl-accepting-chemotaxis-protein
MRRLSFKVKLLLGPVFTILVPMIFVVFLLVPHFEGILYRMLTEQKTATASGLARSVDLVLAEQARLANALAAGYANFSGMGFQFYAGMSLDDQMLEKLRFQLGSALERLGDNYEGLFLVDAKGIAFAGALRTGDPDPYRGEDLSQDPFFQDVMNTGKETVSPVFASAGSGLPAVRILAPIRADGETVLGALGLILNLSPFMDMVTQSRWGQTGYVFLTDATGKVIAHPRQDFILKLNIHEIEGMESVATALAAGRAGTQRYVFEGEENWCAFSPVPAASWAVVATQTVRELAAPVTRIRRLVLWGGAAFLGSALIVVMLWSGRVSRTLGDLTASVRTSAAAFSQDAQNIFEVSCLASKEASSQAAAIEETAASAEEISTVAQANAQRTGEALDRIRQTRTLLDRAAQEVDRLGSSMAATQRSGEASSKVVTTIDEIAFQTNLLAINASVEAARAGNAGAGFSVIAEAVRRLANQSSEAAQDTTQRIQSMLHQIHEDARTVAEVERSFKQIVEAVTRSMELIESIATANREQTHEVSRINEALQEIREAAVKGTACSEQAASASEGIRNRSRELEHIASRLAETVGITGNGSRAEKKPQSTSTPNGPKTVADTAVEKLTEAPQARPALPPSTYSSTRLN

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Crispr_ID: NZ_CP040098_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_15

1003776-1003867

Orphan

Consensus_repeat	Method
TCGCGGCGAGGGCGCCGCTCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_15

>merge|NZ_CP040098|15|1003776-1003867|CRISPRCasFinder
TCGCGGCGAGGGCGCCGCTCCTACATCGACTCATGCCCTGTAGGAGCCGGCTTGTCGGCGACCCAATTCGCGGCGAGGGCGCCGCTCCTACA

>NZ_CP040098|15|15|1003776-1003867|CRISPRCasFinder
TCGCGGCGAGGGCGCCGCTCCTACA	TCGACTCATGCCCTGTAGGAGCCGGCTTGTCGGCGACCCAAT
TCGCGGCGAGGGCGCCGCTCCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425714.1\|1012213_1013680_+\|DUF4346-domain-containing-protein	unknown	unknown	gnl\|CDD\|132326
NZ_CP040098.1\|WP_137423520.1\|1011510_1012125_+\|CMP-deaminase	unknown	unknown	gnl\|CDD\|238613
NZ_CP040098.1\|WP_137423509.1\|994001_994607_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180193.1\|1004039_1006970_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375045
NZ_CP040098.1\|WP_137423510.1\|994665_996018_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP040098.1\|WP_137423515.1\|1000527_1000782_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239154
NZ_CP040098.1\|WP_137423521.1\|1013687_1014380_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP040098.1\|WP_137423513.1\|998395_998767_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224916
NZ_CP040098.1\|WP_170180192.1\|998850_1000479_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|130652
NZ_CP040098.1\|WP_137423511.1\|996014_996284_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235255
NZ_CP040098.1\|WP_137423525.1\|1016462_1017245_+\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP040098.1\|WP_170180195.1\|1015287_1015533_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166
NZ_CP040098.1\|WP_137423331.1\|1002057_1002843_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP040098.1\|WP_137423512.1\|996735_998373_+\|trehalose-binding-protein	unknown	unknown	gnl\|CDD\|239599
NZ_CP040098.1\|WP_170180194.1\|1010546_1010792_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423332.1\|1000879_1002067_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP040098.1\|WP_137423522.1\|1014376_1015291_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224001
NZ_CP040098.1\|WP_137423524.1\|1015672_1016455_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349754
NZ_CP040098.1\|WP_137423508.1\|993445_993946_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NZ_CP040098.1\|WP_137423518.1\|1007245_1009162_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425714.1\|1012213_1013680_+\|DUF4346-domain-containing-protein	gnl\|CDD\|132326	TIGR03283, thy_syn_methano, thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	7.84409e-33
NZ_CP040098.1\|WP_137423520.1\|1011510_1012125_+\|CMP-deaminase	gnl\|CDD\|238613	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.	1.95891e-50
NZ_CP040098.1\|WP_137423331.1\|1002057_1002843_+\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.90147e-94
NZ_CP040098.1\|WP_170180193.1\|1004039_1006970_-\|hypothetical-protein	gnl\|CDD\|375045	pfam17201, Cache_3-Cache_2, Cache 3/Cache 2 fusion domain. The Cache_3-Cache_2 domain likely originated as a fusion of sCache_3 and sCache_2 domains.	4.0778e-65
NZ_CP040098.1\|WP_137423510.1\|994665_996018_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.56049e-55
NZ_CP040098.1\|WP_137423515.1\|1000527_1000782_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239154	cd02753, MopB_Formate-Dh-H, Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	1.36366e-42
NZ_CP040098.1\|WP_137423521.1\|1013687_1014380_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	8.06924e-21
NZ_CP040098.1\|WP_137423513.1\|998395_998767_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|224916	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only].	8.35774e-17
NZ_CP040098.1\|WP_170180192.1\|998850_1000479_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|130652	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type. This model describes a subset of formate dehydrogenase alpha chains found mainly archaea but also in alpha and gamma proteobacteria and a small number of gram positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized). This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.	0
NZ_CP040098.1\|WP_137423511.1\|996014_996284_-\|hypothetical-protein	gnl\|CDD\|235255	PRK04204, PRK04204, RNA 3'-terminal phosphate cyclase.	9.9657e-20
NZ_CP040098.1\|WP_137423525.1\|1016462_1017245_+\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	7.67793e-140
NZ_CP040098.1\|WP_170180195.1\|1015287_1015533_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	2.95211e-13
NZ_CP040098.1\|WP_137423518.1\|1007245_1009162_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.49138e-41
NZ_CP040098.1\|WP_137423512.1\|996735_998373_+\|trehalose-binding-protein	gnl\|CDD\|239599	cd03522, MoeA_like, MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.	6.09382e-127
NZ_CP040098.1\|WP_137423332.1\|1000879_1002067_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.2526e-38
NZ_CP040098.1\|WP_137423522.1\|1014376_1015291_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	2.27104e-10
NZ_CP040098.1\|WP_137423524.1\|1015672_1016455_+\|AAA-family-ATPase	gnl\|CDD\|349754	cd02034, CooC1, accessory protein CooC1. The accessory protein CooC1, a nickel-binding ATPase, participates in the incorporation of nickel into the complex active site ([Ni-4Fe-4S]) cluster of Ni,Fe-dependent carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.	8.18758e-99
NZ_CP040098.1\|WP_137423508.1\|993445_993946_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.35314e-19

>NZ_CP040098.1|WP_137423331.1|1002057_1002843_+|ATP-binding-protein
MELAGLLEKMKMEHLLSQIDSVCEQASKRDLSYKDFLAEALQAEWRGRHGKAVEARLKMARFPWVKTLEQFDFSFQPSIDRKVIRELSGLSFVDRAENVILLGPPGVGKTHLSISLGVKAVEAGYRVLFLTLESMLTRLTRARMENRVERQLQQFVYPRVLIIDEMGYLPMSRDEAGLFFRLLTRRYEKASLIITSNKSFVDWGEIFNDQVLATAILDRLLHHCTTLNIKGDSFRLKEKRKAGLVGAGPRTAFPTEQKASE
>NZ_CP040098.1|WP_137423332.1|1000879_1002067_+|IS21-family-transposase
MLKKEDWMEIRAQVEKGVYKKDIAESLGVHPKTISRALSRGGVPSGKRPGARVSKLDPFKPLIDQLLRDGVWNAMVILREIEQRGYTGGTTILREYISPRRPMRQSRATVRFETDPGVQMQNDWGELTTEVAEIPQKVYFSVNTLGFSRRLFFWCAPRNDAEHTYEGIIRAFEYFGGVVIEVLVDNQKATVIVHRIGESVRFNERFIDLAGHYGFTPRACRPRRARTKGKDERMVGYIKHNFFVRYRKFESFAQMNALAEKWLTEETDQRLHGTVKEIVAERFSREAPHLRPLPALRYDTSYLEHRCVHWDGFIDVLGNRYSVPSQLCGQTVRVRIGLDGTLRVYAEETLVAEHTLRSAAEGWGSVAAHHAQLWQEALQVERRDLSIYEEASRWS
>NZ_CP040098.1|WP_137423515.1|1000527_1000782_-|molybdopterin-dependent-oxidoreductase
MVTVQRFDRLKTPLMRTGLGFREVTWGEALDYAARELGRIKDTYGPDSVGFLTSARCTNEENYLLQKFARSAVGTNNIDHCARL
>NZ_CP040098.1|WP_170180192.1|998850_1000479_-|molybdopterin-dependent-oxidoreductase
MTNSFDELAEAECLFVIGSNTTVAHPIVATRLFRAKAKGGKLIVADPRKSHIARHANIHVQHRLGTDVALINGMMHIIHKNGWHDSKFIEERTEGFEVLVETIEKYPPERVSQMTGIDIGTLTETARLYAGSKSSSIVYCLGITQHSTAVDNVMSLANLSMLCGQIGRPSTGVNPLRGQNNVQGACDMGGLPNVFPGYQAVTNPEIRRKFELAWNVRLPAQNGITIMEMMQGCIDGQVKAMVVLGENPVVSDPDSNHVKHALQSVEFFMAMDIFPTPTTELAHLVLPAASFAETDGTFTNSERRVQRVRQAIPPLAGKTNWQVIQELSTRTGYPMGYGSAEEIFNEMASLTPSYAGISYSRLDPSGLCWPCPTPEHPGTPILHIGRFSRGRGLFHGIEYKPPAETPDEAFPFWMTTGTEYAHYLTGTMTRRCAFLDREMPELITDLHPEDADRLGVLNGDYIRVTSRRGTLESRVRITDAVKAGMIFMPMHFEEAAANLLTNPALDPISKTPEYKVCAVRVEKAAACPREMESEPAALTVER
>NZ_CP040098.1|WP_137423513.1|998395_998767_+|LysR-family-transcriptional-regulator
MSENIPTIRLNLWLETADGLYFGLGRAMLLANIQKCGSLRKAADEMGMSYRAAWGKIKKCEEIIGMKLIYQSGSKSEGYRLTDAGKLFMESYFAWFDHVEKEALKKARELMPVMVRSYKEAVE
>NZ_CP040098.1|WP_137423512.1|996735_998373_+|trehalose-binding-protein
MANIGVYSYEEYLRIVESFHGSVAPGLVVGGFMVDLAMKRMPGGILFDAICETTSCLPDAVQLLTPCTIGNGWLRVFNLGRFALSLYEKYEGEGIRVFVDAEKLGAWPEIKSWLFKLKPKAEQDKDRLMSEIEGAGHSICGVQSVKVQTQFLGKKNRGPIATCILCHEPYPARDGAICRACQGETPYIPSASSDDRRDPLPPLRAVPTEKAVGKRALHDMTLIIPGVTKGAAFTQGQQITIGDLCRLQQMGRSRVYVQEENHIHPEWVHENDAALAFAKTMAGEGVTYDEHPREGKINLIADRDGLFVVQEDRLEQFNMIRGVMCASRRACVVVKRDRPVAATRAIPLLLPRTDFEKALTILDDGPIFKVLPLRKARVGVLVTGTEVFQGLIRDKFVPIITSKVEKYGCGVVRSLIVPDDRSAIADGIGQMILQSGVDLIITTAGLSVDPDDVTRQGLVDAGVTNMLYGAPILPGAMTLIARIGTVQVMGVPACALYFKTTSLDLLLPRMLANLEITRRDLARLSHGAFCLACKTCTFPKCPFGG
>NZ_CP040098.1|WP_137423511.1|996014_996284_-|hypothetical-protein
MISIDGGLKSGSGTLVRDAVALCALTGETLHLFNIRARRPRPGLRPQHLSAVRAAAGAADGASKPPAASVLFWLGRFFFTRCEGIPKRS
>NZ_CP040098.1|WP_137423510.1|994665_996018_+|YihY/virulence-factor-BrkB-family-protein
MVSKFGDIKRFLQSDLWNLRLADLPPARAALLRALRIAAIVGRRFTRDQCHLRASALTLFTLLSIVPMLAMAFGIAKGFGLQNAIERETLRRLAGQEEVARWIMDFAHTLLETTRGGLIAGIGVVALFWTVLKVLQNIEISLNAIWKIERHRPFSRRVSDYLSFMLIAPILLVVSSGLTVMVTQQVGFMSERFGIVSYFESFILKALRLVPYLVLWALFTFLYIFMPNTKVKATSAALGGVLAGTLYQIFQAAYIYFQVGMSNYNAVYGSFAALPLFLLWLQASWMIVLLGAEICYAHQNTALFECEPQIRRLSREARNLAALSVMRYLARRFHEGERGCSEEDLVRAEGMPVLLIRQTLTELEKSGLVARMASPEDNGDSSVSHEERLYQPAVPVTQLTIRRVLDHLEQNGESRVPVLNPAEIEDLAQRLKALHEAAEKSPANSRLLDL
>NZ_CP040098.1|WP_137423509.1|994001_994607_-|hypothetical-protein
MSGAVTPGATPISAKLLLPGIDWKNEHRTSNIEHRTSNIEWVQIFCFLFPRSTLGTQLCRSSSFGEAVPKPELGNEGEDHFEILASSLERQRVSAVAGGKLELPGQGVPKLELGNEGKKIVIQSSTSESSLTRLFSFDVERSMFDVGRSSLKTTQWHKCNLVFHSMLNVRCSIFDVQCSSLKNNPMSYGGIKILAFCRHSG
>NZ_CP040098.1|WP_137423508.1|993445_993946_-|NUDIX-hydrolase
MKFCPQCAAPLVEKVIDGRNRLACSDSRCGYVFWNNPTPVVAAVVEWNGSVILVRSKGWPEKFFGVVAGFLEAGETPEEGVLREVREELGLEGRIVDFLGIYSFFERNQVIFAYHVSGEGEIVLGDELAEVKALPPERVRPWEKGTGPAVKEFLRRRGVSVRQGGA
>NZ_CP040098.1|WP_170180193.1|1004039_1006970_-|hypothetical-protein
MRLTFKAKLVVLCVALVAIPLIASTAINTALSTSQSKHLSDFLSTSLKESSLNFLAALVEADHVFVNDIVTRTEEDALRLAASANLKEYIHALSGTDENLNAIFRDQVMAEMEGLVQNLRTQHAYVLKQLNMALNLARTSVGRSDLSTITHTWHAVNQFTQESRSVELPLLQLGAQILYPTEAFDQQVPVVDDVKKITGSTCTIFQKMNPQGDMLRVATNVENSAGARAVGTYIPAVNPDGSPNPIVATVLQGKTFQGRAFVVDDWYQTIYEPLRNASDEIIGMLYVGDRIKDLAGIQSELLKRRLGREGHFFVMDSSGSVVIHPESSLIGRNAVESFPDSPMGKVLTLIREESTGLLEHQDEKGRKGFLAYHYFKEWDWVVCAAGRWDDMAVGVRENAFRAFREEMEALWNVATVQTADGERPMYTQVRFLDATGSEILKMVEGRFSDDLGSRAEEAWFLSAVKAESVVNSGVEIARNTGKPEMRAVVPVREYGTFQGAVVINLDWSVVWQIMKAEKHGQSGYSWVCNDRGVLISHPKYSLSDGVNVSESSYGDLARLVKDGLSGNAGTGGYFFEGEDKFMAYKPLKVGTGHYLVTTSMAQDELLAMVRQVTERLNRDRLKSMQWAAAVVLSMVGVGIVAAFLFGRGIANSISRAVEGLTEGADQVAAASGQVSASSQQLSEGASQQAASLEESSSAIEEMASMTRQNADNAKEAAQIATQSGQKFTNASTALQSLTQSMDEISKASEETQKIIKTIDEIAFQTNLLSLNAAVEAARAGEAGAGFAVVADEVRNLALRSAEAARNTAVIIDGTVKRIREGSTLVSNVNGSFKEVKTDSEKMAELIAEIAAASQEQAEGIEQINRAILEMDQVVQQNAANAEETAAASEELTAQANQLREYVSLLVQIVGQGTRKSERAAKEPERGGSGMKTPAAEVPLRAGGGGKGDGRDRPARRKTGSSKAEEVIPFEEDFSDF
>NZ_CP040098.1|WP_137423518.1|1007245_1009162_+|methyl-accepting-chemotaxis-protein
MRRLSFKVKLLLGPVFTILVPMIFVVFLLVPHFEGILYRMLTEQKTATASGLARSVDLVLAEQARLANALAAGYANFSGMGFQFYAGMSLDDQMLEKLRFQLGSALERLGDNYEGLFLVDAKGIAFAGALRTGDPDPYRGEDLSQDPFFQDVMNTGKETVSPVFASAGSGLPAVRILAPIRADGETVLGALGLILNLSPFMDMVTQSRWGQTGYVFLTDATGKVIAHPRQDFILKLNIHEIEGMESVATALAAGRAGTQRYVFEGEENWCAFSPVPAASWAVVATQTVRELAAPVTRIRRLVLWGGAAFLGSALIVVMLWSGRVSRTLGDLTASVRTSAAAFSQDAQNIFEVSCLASKEASSQAAAIEETAASAEEISTVAQANAQRTGEALDRIRQTRTLLDRAAQEVDRLGSSMAATQRSGEASSKVVTTIDEIAFQTNLLAINASVEAARAGNAGAGFSVIAEAVRRLANQSSEAAQDTTQRIQSMLHQIHEDARTVAEVERSFKQIVEAVTRSMELIESIATANREQTHEVSRINEALQEIREAAVKGTACSEQAASASEGIRNRSRELEHIASRLAETVGITGNGSRAEKKPQSTSTPNGPKTVADTAVEKLTEAPQARPALPPSTYSSTRLN
>NZ_CP040098.1|WP_170180194.1|1010546_1010792_-|hypothetical-protein
MSWSAIRIALGSFLLALGVLGLVLPILQGWLLLALGALVLSRDVPAFRRLVHWITKRFPLVGEALERIKTRWQALVERGRR
>NZ_CP040098.1|WP_137423520.1|1011510_1012125_+|CMP-deaminase
MPRNRPSWHEYFMLIAKIVSSRSTCNSRPTGAVIVKDNHILSTGYNGAMPGAPHCIDGPEIDGKPYCYRRALGVPDIDKYNFCRASHAEANAIAQAARYGISIEGGTLYATLAPCYTCLKLIATARIRAIYYEHPYDSSTPERDAFWSRAVQEAGIETFEQLIISSETYDYILAGIRGVTSKRRLDATDFVEPGPRPPSNRAPE
>NZ_CP040098.1|WP_137425714.1|1012213_1013680_+|DUF4346-domain-containing-protein
MTFSPLHFGDRLEVINPAGTMGIVTLWSRVDHVLRVVRDAGIDLSSKTSPVAAAGTLYGNGLREMLRNLLHNPQIDTLIVCGRDRSGSLEELTAFFERGVEPYDNPHARYEPVEGFGTPSCVRIRGTSRILDDLVTPALFRRPPTIVSFWPLQDPDVRDELRSFVAGYRPSPPPTPERIVVPLPRVRITSFPCNPREHTIRAGDPLTAWKDLIFTLHRFGVPVRLAKGERRELQNVKVIVEEPREIPEEDLVRWGYDPVHLRRYQEAILEGTCSEDETYSYGHRLRTYFGVDGLEEAARRLREDPEDRKAYVVLWDPRRDLQAAQGHPCLVSLFFRRFQERLTLTAVFRTHNALDAWLVNFYGLLAIQRHVASACGMDPGAVTVVSQSISVDTTQMDRAAFIAAERSFRYREDPMGYFRITVDEEAIVVEHRQGDFTLHTYRHPKSSRLQHEIARDCAVSDINHALYLGRQLARAEACLREGKPFVQE
>NZ_CP040098.1|WP_137423521.1|1013687_1014380_+|HAD-family-hydrolase
MKPRVIFFDIGHTLVTGAHQSPRRLLGSRLALTEKETHRLGKLIMTHPAEDPSTLATAVAAHFPQRDPHRIEQEITRLWEDQTLCVRCIPGAHRLFRRLKGAGIRLGVISNIWHPFFNGFQKNFPEISSQLDFTVLSYRLQHKKPSLDIYREAARKAGEPPQNCWMVGDSYELDMEPARRVGFKTLWILCRPERERSLLVELLNAEKPLPDGVVEDLEAADRFFMERLDS
>NZ_CP040098.1|WP_137423522.1|1014376_1015291_+|alpha/beta-fold-hydrolase
MIAILTLVALIFLAVPAVTCAFFWYETANGPHLAILREVSRGRVKAWVFRGYLTSLFSLFLVIATFPMGVFANRRKAPLRGDDRPAPPVLLVHGVYHNSSAWFLLRIFLERAGFTRIRAWHYPSFRPSFDELAGRLVEEIRELARAFPGEKILLVGHSMGGLLIRAALSDPTVAAVAGAVVTLGTPHQGTKLAVFAVGRSARSLGYRCPLIEKIKTLPFPQELPRLALYSPVDDMVLPNSAGVPEGSSWPAEMTAPVGHLCLIYHPSILRRVVAFLKENSAAGEGKRQASGRSESEMRSEEVLP
>NZ_CP040098.1|WP_170180195.1|1015287_1015533_+|succinate-dehydrogenase-assembly-factor-2
MSALGDRYRRKLRYLTARRATRELEVILERFWARHGATLPDEDLPDLERILSLDDLDLLAILLGQKPLPDGYRRDLLERMR
>NZ_CP040098.1|WP_137423524.1|1015672_1016455_+|AAA-family-ATPase
MKIAISGKGGVGKTTLSAFLVRWFADQGKSVLAIDADPDANLGNALGVVGASEIPPITAMKDLIAERTESVPGSFGGFFKMNPKVDDLPEKVAVPCGDRIRLMIMGGVKKGGTGCVCPESVLLKNLVHHLILRRDEVVVMDMEAGVEHLGRGTARAVSALITVVEPGRRSVETALRIRRLASDIGLSKLFVVGNKIRNGKDREFLENLLPEFQFLGFLPFDEQIIEADLNGAFASNVSSETRDSLEAIARKLSSMHTAQE
>NZ_CP040098.1|WP_137423525.1|1016462_1017245_+|GTP-cyclohydrolase-I-FolE2
MIDVQNQEDHRNINIDKVGVKNIRYPLTVMDRENDFQHTVATINMYVNLPRKFKGTHMSRFIEILNEFYGHLDIREFSKILGAMQKRLEAQSAHLEIAFPYFIEKKSPVTETTGLMEYGCRVIGSMDHRKGYDLIVEVNVPITTVCPCSREISNYGAHNQRGMARLAVRYKKFVWIEDLIRVVEEAASCEVYSLLKRPDEKYVTERGYENPKFVEDVVRDIAAQLKPDPNILWFQVDVENFESIHNHSAYAFIERSKANP

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Crispr_ID: NZ_CP040098_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_16

1456505-1456588

Orphan

Consensus_repeat	Method
AAGCTGGAGCTTGGGAACGAGGAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_16

>merge|NZ_CP040098|16|1456505-1456588|CRISPRCasFinder
AAGCTGGAGCTTGGGAACGAGGAGAAAAGACAGCGAGTTTCAGCTGCAGCAGGAGGGAAGCTGGAGCTTGGGAACGAGGGGAAA

>NZ_CP040098|16|16|1456505-1456588|CRISPRCasFinder
AAGCTGGAGCTTGGGAACGAGGAGAAA	AGACAGCGAGTTTCAGCTGCAGCAGGAGGG
AAGCTGGAGCTTGGGAACGAGGGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423859.1\|1451092_1452742_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|100094
NZ_CP040098.1\|WP_137423869.1\|1468143_1468503_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP040098.1\|WP_137423854.1\|1440392_1441853_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP040098.1\|WP_137423864.1\|1461050_1462949_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP040098.1\|WP_137423868.1\|1466772_1468029_+\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|235488
NZ_CP040098.1\|WP_137425741.1\|1459583_1459895_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|338835
NZ_CP040098.1\|WP_137423860.1\|1453524_1454508_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NZ_CP040098.1\|WP_137423856.1\|1443197_1444700_+\|acyl--CoA-ligase	unknown	unknown	gnl\|CDD\|341286
NZ_CP040098.1\|WP_170180231.1\|1463362_1464040_+\|TIGR04211-family-SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|275056
NZ_CP040098.1\|WP_137423855.1\|1441874_1442690_+\|DUF169-domain-containing-protein	unknown	unknown	gnl\|CDD\|376845
NZ_CP040098.1\|WP_137423858.1\|1449657_1450692_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224010
NZ_CP040098.1\|WP_170180230.1\|1444795_1445620_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224476
NZ_CP040098.1\|WP_137423861.1\|1454897_1456148_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NZ_CP040098.1\|WP_137423867.1\|1465363_1466605_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP040098.1\|WP_137425739.1\|1445744_1446989_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP040098.1\|WP_137425740.1\|1447329_1448496_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP040098.1\|WP_137423866.1\|1464506_1465271_+\|methyltransferase	unknown	unknown	gnl\|CDD\|129628
NZ_CP040098.1\|WP_137423870.1\|1468650_1469376_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137423862.1\|1456756_1459405_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP040098.1\|WP_137423863.1\|1459952_1460936_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|274090

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137423859.1\|1451092_1452742_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|100094	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP040098.1\|WP_137423869.1\|1468143_1468503_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	5.71245e-11
NZ_CP040098.1\|WP_137423854.1\|1440392_1441853_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.69755e-91
NZ_CP040098.1\|WP_137423864.1\|1461050_1462949_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP040098.1\|WP_137423868.1\|1466772_1468029_+\|adenosylhomocysteinase	gnl\|CDD\|235488	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional.	0
NZ_CP040098.1\|WP_137425741.1\|1459583_1459895_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|338835	pfam13591, MerR_2, MerR HTH family regulatory protein.	2.59193e-15
NZ_CP040098.1\|WP_137423860.1\|1453524_1454508_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.83268e-47
NZ_CP040098.1\|WP_137423856.1\|1443197_1444700_+\|acyl--CoA-ligase	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	2.39801e-121
NZ_CP040098.1\|WP_170180231.1\|1463362_1464040_+\|TIGR04211-family-SH3-domain-containing-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	2.48908e-47
NZ_CP040098.1\|WP_137423855.1\|1441874_1442690_+\|DUF169-domain-containing-protein	gnl\|CDD\|376845	pfam02596, DUF169, Uncharacterized ArCR, COG2043.	3.24675e-59
NZ_CP040098.1\|WP_137423858.1\|1449657_1450692_-\|hypothetical-protein	gnl\|CDD\|224010	COG1085, GalT, Galactose-1-phosphate uridylyltransferase [Energy production and conversion].	2.68612e-31
NZ_CP040098.1\|WP_170180230.1\|1444795_1445620_+\|hypothetical-protein	gnl\|CDD\|224476	COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane].	1.68007e-56
NZ_CP040098.1\|WP_137423861.1\|1454897_1456148_+\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	3.97768e-45
NZ_CP040098.1\|WP_137423867.1\|1465363_1466605_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP040098.1\|WP_137425739.1\|1445744_1446989_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.2496e-83
NZ_CP040098.1\|WP_137425740.1\|1447329_1448496_-\|hypothetical-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.70011e-54
NZ_CP040098.1\|WP_137423866.1\|1464506_1465271_+\|methyltransferase	gnl\|CDD\|129628	TIGR00537, Putative_protein_methyltransferase_AF_1784, HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. [Unknown function, Enzymes of unknown specificity].	0.00500315
NZ_CP040098.1\|WP_137423862.1\|1456756_1459405_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP040098.1\|WP_137423863.1\|1459952_1460936_-\|DnaJ-domain-containing-protein	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	3.64041e-117

>NZ_CP040098.1|WP_137423861.1|1454897_1456148_+|nitronate-monooxygenase
MKRLDDYRLKLGELELVPLVIGGMGVDISTTELALEAARLGGIGHISDAMLPTVADRRFHTRFVAKKLERHKLHLLNPNKSAVQFDLDELAEATRLHVAYTMEHKHGPGLIFINCMEKLTMNNPRDTLRVRLRAALDAGIDGITLSAGLHLGSFKLIADHPRFRDARLGIIVSSVRALNLFLKRSARIKRHPDYIVVEGPLAGGHLGFGPDWREHDLKTIVAEVLQFLRSEVFAIPVIPAGGIFTGTDAVEYLEMGAAAVQVATRFTVTRECGLPDDVKQEYFRAGEEDIEVNLLSPTGYPMRMLKHCPAVGSKTRPHCEAYGYLLDGSGRCAYLEAYHGAVANGGIDGARSLEKICLCTHMRKFQCWTCGHTTYRLKDTTRRLADGSYQPLTAEHVFRDYQFSTDHRIALPEPEP
>NZ_CP040098.1|WP_137423860.1|1453524_1454508_-|MBL-fold-metallo-hydrolase
MSLVMPLSSGVSRVHTITLPLPFRLKAVNLYLLEDCEGHILIDAGVNTPEASDALDEALRDLDVRWESIHTVFITHYHSDHCGLAALVRKRSRAAVYMAREDFNLLRTFERRPDTMVGPEGFYVEHGMPRKMVGMLGAATALLMDAIVPFRPDRFYRHGEVIARQPFRFLPLHTPGHTVGHTCLFEKNSGLLFSGDHVLDPITPNISACPANPLTNPLGSYLRSLSGLVGLKVSRTLPGHGNPIVDLNGRIRSIHVHHEDRTRRVLEALDAGAGDAFTVSLVIFGDDLDLLERWMAFQEILAHLVWLEDEGRVARTMEGTRVCFRAA
>NZ_CP040098.1|WP_137423859.1|1451092_1452742_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MALSPLAGRPAPAELLIDVERLQNAYYTCRPDPKDPRQRVQFGTSGHRGTPEEGTFTESHILATTQAICDYRVYMGINGPLFMGKDTHALSIPAERTALEVLAANRIETMVQRDDGFTPTPAVSREILCYNRGRKEGLADGIVITPSHNPPRDGGFKYNPPHGGPAETEVTQWIQDRANAHLRADNREVRRVTYDAALKSATTHFHDFILPYVRDLAAVIDMDRIRSAGVRIGVDPLGGSAVNYWEPVRDVYRLDITLVNSVVDPTFRFMTVDHDGNIRMDCSSPYAMARLVTVKDHFDIAFGNDPDADRHGIVTPSMGLLNPNHYLAAAVHYLLTHRPQWPETAVVGKTVVSSVLIDRVVTALGRRVSEVPVGFKWFVEGLLSGSYCFGGEESAGASFLRRDGTVWTTDKDGLILGLLAAEITARTGKNPGELYRELTARYGTPYYRRIDVPATHAEKAALGRLSPEAITATELAGEPILSKLSCAPGNGAPIGGLKVITENGWFAARPSGTEDLYKVYAESLKDEAHLAALIEEAKAVVKKTLEHAA
>NZ_CP040098.1|WP_137423858.1|1449657_1450692_-|hypothetical-protein
MRIEFRRQEKIARCLDPSIGFAESQVRTEIRWDPLTGESALVGHFVGFKLEPVDFTRQIEESRPNCPFCPERVLDHTPKFPTDLVPGGRVERGETVVFPNLSPYGEHSAVAVMCREHFIAPSGFTPSMLSDAFLACIDYFDHITHRPGTDFAIVSWNYMPAAGSSQVHPHLQAYASDVPGSLLAAELAASRRYCEAEGRPYWTDLIEEEERRGERLVARGRYTAWLTAFVSLSPLSDIMVIFPEARTMKELSKEALEEFSRGLCQCLGHLGSLGIYSFSLGWFPARKEGDNHFRLHVRLSPRLYVAPRVWCTDTPTFSYLYREPFMFRTPEELARGLRSVIRLC
>NZ_CP040098.1|WP_137425740.1|1447329_1448496_-|hypothetical-protein
MEAMKGPHRRLHESAGLINSSLADSRREDANRIFQSETLPALEETREIIGEIVNRLKAHQDEAKASMFATGHFSRTSIGIATAIAVTLGAFFSLVLVRLMIRPLREIIQGLHSGAEKVGSASAQVSSSSQSIAEGASEQAASLEEISSSLEEISSMTSQNAENARNADGLMKETNQVVEEANGAVEMLMTSMREVSEASRSTSEIIKTIDEIAFQTNMLSLNAAVEAARAGEAGAGFAVVADEVRNLAMRAAEAARNTAGIIQGSAGKIQGGLEQVETTREAFSKVAERASKVGELLAEIASASGEQAEGIEQVNRAVSDMDRVVQENAANAEENAGACQELKSQAEQMMLFVKELEAMAGSRQWRLWGWTKKSINITRTEKQPLNRP
>NZ_CP040098.1|WP_137425739.1|1445744_1446989_+|MFS-transporter
MRKLESFRENATLTILCIQVIFVMVGMGLISPILPQYARTFGVNITMVGLLITIFGVARLIVDIPAGKLTDGLGRRLVSIVGLLILAAGSLGCGLASHYWVLLGFRFIQGIGSAMYTTAAIVMLADISTPANRGRVMSFYQGSLLLGAGLGPTVGGFTAEHFGLAAPFFVFALFSLLASLWAYLRLPETHPALSPQAGELGAENPGPRPAESSRGLRVLLRDVNFLLISMITFGIFFMRTGAQNQILPLLGAERLGLSEGQIGLALTLVTIIQFVAIFAAGRLSDRFSRKAVITTGCVITAASLWMLGQSYTYWFFFLTCMVMGLGIGISGPIPVAYVADIIPRENYSVGMGAYRAISDLGFVMGPVLMGWLADMKGFEMALLFNSLFLFLSVLIFHFVAKEPARYSSVRSDQR
>NZ_CP040098.1|WP_170180230.1|1444795_1445620_+|hypothetical-protein
MDYSCASDWGSRFGRLGYRLIGNHRRRSLKNLARVFAEEKSPHELESIAAAMFENFFRSGFECVAYSHLPAVEKKEYVHIAGKEKLDEALGLGRGVIALTAHMGNFLILMTRLALEGYDVDLLVKKMKDKKVEQRLQNLRMELTFNTIYVNPKVQSARTSLGALKNNHVLVLLGDQKQGKAGVDVTFFGIPAKAAAGPISLSIATGAPVLPMFMIRNPDQITHTLVIDAPLELTRTGSRKKDIEINVQKYTDVIQSYVQKYPDQWTWNHRRWAQ
>NZ_CP040098.1|WP_137423856.1|1443197_1444700_+|acyl--CoA-ligase
MVPYHILLERAADSPDNTAFISKPSREVSFSELAERTKRLAKGIADAGIGKGDVVGALLPNCMEFVDIYIAAGAVGAVFQPMDFRFQGEELRNTLVNTDVKLIFCHRSGVNDALEAVIPASIQKVIVGGEKPGWTAYEKMLASTAGDIVPPELDEEKDIALFLYTSGSTSGIKCVPVTWRQLDFFPSDLIDTWGLDMFTRGISLLPLSHISGPIVINLCLRIGGSYVITDRLAPSSMIQLIEKYRVSWAHTVPSIAGLLLRGNPEKHDLSHFKYIALMGTSVPVSLLKELERVIPSAVAVQGYGLTETSPLITLETPQDHKNKIGSIGKGLAGVDIRLVDKDGKDVPEGEPGEIIVRGPKVFSGYYGNPELTAKVIRDGWFHTGDVARRDTDGFYYHLGRLDDLIITGGLNVFPAEVEAAAAKYPGVKEAVAYAQPDPGRGCILCMDVCPCDGAEIDLSRLRRFLQKHLAAYKVPKQIHRVDDISHTPTGKPIRKPNTKA
>NZ_CP040098.1|WP_137423855.1|1441874_1442690_+|DUF169-domain-containing-protein
MESKIARSLNLKYHPVAVLWSEDRPEKAMGFKEGKWGCVMWMLAAAAKGRTAAFDEKTYGCWGGGVGLGFGNQYLNFPGGMECFYYFLSTGNENWQKGRDMAEKLASAAGKEFLEEFRHGEGFMKSPELVKKFIDSLPIMEVPKKYVVFKPLTHLDPTQEQPQVVVFLADPDQLSALVVLANYGREDNQNVIAPFAAGCQQIGIFPYQEARSERPRAVIGLTDLSARKNLKKQLDRNVLSFAVPWRMFEEMEENVEGSFLQKETWKALQAP
>NZ_CP040098.1|WP_137423854.1|1440392_1441853_+|efflux-transporter-outer-membrane-subunit
MRFMPRLLVLISLLAGGCAIVGPDYVEVQPGVDGGWTAQMEKGLEASRPDRDVLAEWWKVLDDPVLTALEEKAVQGNLDLQTSLSRLRQARLLRGISESDLYPTLNASGVVQEERGSESLQPGAGGTEEEYYLAQFDSAWELDLFGGIRRSIEAAQAEIGAGRADVRDVLVSLMAEVAVNYIEVRTYQQRLDITWANIRTQEETYELNKSRYEAGLIDQLAEQQSLRNLETSRSLIPRLTIGLRAAKNRLAVLLGQEPGSIDELLVADKGIPQVPPKVAVGIPAEAMRRRPDIRRAERLLAAQTARIGVATAELYPKFRLLGTIGLEAITSNFFDAQSRFWGIGPGMSWNIFQGGALRLNIDLQTERQKEAMIFYKSTVLQALQEVEDALTAYAKEQMREESLQKAVAAARRTEFLARDRYDAGLTDFYNVLDAQRALLELEDELTLSRAEVASNLARLYKALGGGWEYYENLLGQMQQPEAIGNE
>NZ_CP040098.1|WP_137423862.1|1456756_1459405_-|ATP-dependent-chaperone-ClpB
MDLNKFTVKSQEALQAAQTKAVRFGHQEVDGEHLLLALLEQSDGLVPRLLRRMEIPVESVTERIVQELDKKPRVSGPGAEPGKVYVTQRLNRLLVKAQEEAERLKDEYVSVEHLLLAFVDEGSTTPAGRVLQEFNIGRDLILRTLTNVRGHQRVTSATPETTYEALQKYGRDLVQEARTGKLDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAHRIVRGDVPEGLKDKTIFALDMGALVAGAKYRGEFEERLKAVLQEIKESEGRILLFIDELHTIVGAGKAEGAIDAGNMLKPMLARGELHCIGATTLDEYRKHIEKDAALERRFQPVLVEQPTVEDTISILRGLRERFEVHHGVRIQDSALVAAAVLSNRYITDRFLPDKAIDLVDEACAMIRTEIDSMPAELDEVTRRIMQLEIEEAALNKERDKASRERLEALRKELAALREKGGAMKAQWEREKEAIKKVQALRESIEKVRHEMELAERQYDLSRVAELKYGKLAELERQLKQEEERLSSEQRGARLLREEVTEEEIAEIVSRWTGIPVAKLVEGEREKLLRLDEILHRRVVGQDEAVQLVADAVLRARSGIKDPRRPIGSFIFLGPTGVGKTELAKTLAEALFDSEDNLVRIDMSEYMEKHTVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILFDEIEKAHHDVFNVLLQILDDGRLTDAQGRTVDFKNTVIIMTSNIGSEYLLEGVTDRGEIKEEARERVMSALRRHFRPEFLNRVDDIVLFKPLTREEVKQIVGLLTADLERRLKDRRIRLEISDAAKEFIAAAGYDPVYGARPLKRYLQHQLETRIGRALIAGDIRDGATIRVELQGDQLTVVHVNPQNGEEAAEAAVQ
>NZ_CP040098.1|WP_137425741.1|1459583_1459895_-|MerR-family-transcriptional-regulator
MIRLRRTSRLEAYLDVYDVAAETGVHPEFIRRLVRLGLLDPVEAREDERLLFEVSAVPLVRKIIRLRRDLGLNYAGIGVVLELMERIESLEAKIRELEGDLFE
>NZ_CP040098.1|WP_137423863.1|1459952_1460936_-|DnaJ-domain-containing-protein
MAVKFRDYYEVLGVPRDASQQDIQRAYRKLARKYHPDVNKEPGAEEKFKEVSEAYEVLKDPEKRRKYDQLGAHWKEGQEFRPPPGWDAHFDFGGQGGGSQFFWSESGGDFSDFFDVLFGSRGFRQARGSAGRTGPAAGAWSRPGADQEAVLSVSLEEAFRGTTKTITFQVPRTTPDGRVVTETRTLEVKVPPGILPGQKIRLPGQGSEGLGGGKRGDLYLKIQVEQHPVYRLEGRNLVMDLPVSPWEAALGAEVHLQTLSGPVTLKIPAGTQSGQKLRLRGKGMPNPRGTAGDLYAVVKIVVPKRLSKKERELFEALREASSFNPRN
>NZ_CP040098.1|WP_137423864.1|1461050_1462949_-|molecular-chaperone-DnaK
MAKAVGIDLGTTNSVVAVWENGKATVIPNAEGSRTTPSVVAYTEDGQRLVGQVARRQAIMNPRATITSAKRFIGRKWGEVDEESKIVSYEVVRGPNDAVRFNIRGKLVAPEEVSAQVLRKLVDDASRYLGERVQEAVITVPAYFNDAQRQATKDAGEIAGLKVLRIINEPTAAALAYGLEKKKNETILVFDLGGGTFDVSILDVGDGVCEVRATAGDTHLGGDDFDKRVVDWIADEFRKDTGIDLRNDRQALQRLYEAAEKAKCELSTTAETEINLPFITADATGPKHLVMKLSRAKFEALTHDLVERCMGPVNQALADAKLSAADIDEVILVGGSTRIPAVQELVRKLTGGKQPNMSVNPDEVVAVGAAIQAAVLKGEVEDVVLLDVTPLSLGVETLGGVMTKLIERNTTIPCRREEIFSTAEDNQTAVDIVVLQGEREMAADNRVLGRFRLEGIRPAPRGVPQIKVTFDIDANGILNVTARDMETGKEQKVTISESTNLEKSEVERMVRDAQAHAAEDKRRRETVEARNQVDTLAYQLERTLKDLGDKVPVHEKSRCEGLIEEARKAVADPATTKERFTQLSSDIQQALQMVAAAAYRQAGEAGSGGAERERQRPESGGEDVIDAEYTER
>NZ_CP040098.1|WP_170180231.1|1463362_1464040_+|TIGR04211-family-SH3-domain-containing-protein
MNLEKPVRHLVLALLLILLATPAWGEYVADVFEVTLRTGPSTSHKIVAMLKSGQAVQVLEEGEGWTRVKVSSGPGAGNEGWLLSRFLMKRAPYEALAQKLQQENAELKEKLATLENHWSTAASREKQLSQELAETSQAIESLRSEYETLKEGASEYLELKAQFEETRAALESAEETVKKLAMENENLRFSQKIKWFVTGAAVLLCGWVIGLIMGRQQKKRRAAYL
>NZ_CP040098.1|WP_137423866.1|1464506_1465271_+|methyltransferase
MGKHQCRIIIPDLDSQVDQNEEWIYVEKDGRRLKLRLHDYGQLYKIPGLYEKIFYEELNCDSPSVVCGLLGDALRETGNPDGDLRVFDFGAGNGMVGEKIKQLGCELLVGVDILPEAKEATERDRPGLYDRYYVLNLADLEDDIRKRLESYNFNTLVTVAALGFNDIPTQAFLNAFNLLQDEAWVAFNIRDRFLSESDDTGYRQALESMINNNFEIMKETRYCHRLSLNGEELCYHAIVGRKTGNVDIASFVSN
>NZ_CP040098.1|WP_137423867.1|1465363_1466605_+|methionine-adenosyltransferase
MKNEKFLFTSESVTEGHPDKVADKISDSVLDAIIAEDKGCRVACETLVTTGMAMVAGEITTDSWVDIPEIVRNTIRDIGYEHSDMGFDWKTCAVITSIDKQSPDISQGVTAGEGMFEEQGAGDQGLMFGYACDETPTLMPMPIHYAHRITRKLTEARKSGALHFLRPDGKSQVTIEYEGGKPLRVDAVVVAAQHSPEVTYEELRDGIMEEVIKKAIPERYLDERTKFFINATGRFVIGGPMGDCGLTGRKIIVDTYGGQGRHGGGCFSGKDPSKVDRTASYMARYVAKNIVAAGLAQKCEVQLAYAIGVAEPVSVMVDTFGTGKVKDSQITRFVRQTFDLRPAQMISKLKLLRPIFKETAAYGHFGRNNPNFTWEKTDQAEALAELAGISEPSLPEVEESPREGTRKKITVVR
>NZ_CP040098.1|WP_137423868.1|1466772_1468029_+|adenosylhomocysteinase
MNHDVKDLKLANEGRQRIEWAAQAMPVLDGIERRFIKARPLQGVTLAACLHVTTETGRLMQVLKAGGAEVLLCASNPLSTQDDVAASLVVHDKIPVFAIKGEDRDTYFRHIHQVLDAKPRITMDDGADLVSTLHSERRDQLSDIIGGTEETTTGVIRLRSMAEKGVLGYPIIAVNDANTKHLFDNRYGTGQSTVDGIVRATNRLLAGCTFVVSGYGWCGRGVAMRAAGLGARVIVTEVDPLRALEAVMDGYTVAPMEEAAKIGDFFCTVTGDMHVLRKEHFEKMKDGAILCNSGHFDIEIDLESLKATATDRRLIRDQVEEFTLPNGRHINVLSEGRLVNLAAAEGHPSSVMDMSFANQALCAAYMAQNGKDTPKGVMGVPEEIDREIARLKLQAMGIAIDTLTPEQERYLNSWEMGT
>NZ_CP040098.1|WP_137423869.1|1468143_1468503_-|sulfite-exporter-TauE/SafE-family-protein
MTVAWWIMVASGILVGIGASFTGLGGGFLMIPLLLFLGFPAQKAVGTSFMAILVISFSALLAHNKLANVDYRAGLLLGVGGVLGAQVGARLLEHVTTAHFKRIFAVILAGLAVYIFFKK
>NZ_CP040098.1|WP_137423870.1|1468650_1469376_-|hypothetical-protein
MRDVAIEERMDANLRTITGGKTMAASSGGIEGKKGLLRPRNAILLVLVVLFAAFYVITPTRYFFKESGGKLSLRIGKCPWLGGSYSKALEPFEAGTADFGPLLDQRFETEAEAVAALREFCFPRIQENEERAAALEKELKTAYGALLGYLGAARSLGAEGLDEDISGVKAWLEFYEGREKRRAEGELPFILLPTEIPTTTAPEAAEAAVPAKPEAKAALTTEGGQAAEPVGHGEPHAESTR

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Crispr_ID: NZ_CP040098_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_17

1555850-1555955

Unclear

Consensus_repeat	Method
CCTTCATTGATCTCCGGCTCTCCCGCCTCATGTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_17

>merge|NZ_CP040098|17|1555850-1555955|CRISPRCasFinder
CCTTCATTGATCTCCGGCTCTCCCGCCTCATGTTCCTTGATGCCGCCATACACACCTTCCTGGATCTCGACCTTCATTGATCTCCGGCTCTCCCGTCTCATGTTCC

>NZ_CP040098|17|17|1555850-1555955|CRISPRCasFinder
CCTTCATTGATCTCCGGCTCTCCCGCCTCATGTTCC	TTGATGCCGCCATACACACCTTCCTGGATCTCGA
CCTTCATTGATCTCCGGCTCTCCCGTCTCATGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137423923.1\|1543725_1544511_-\|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP040098.1\|WP_137423931.1\|1556481_1557285_-\|SAM-dependent-chlorinase/fluorinase	unknown	unknown	gnl\|CDD\|376645
NZ_CP040098.1\|WP_137423927.1\|1548504_1549929_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_CP040098.1\|WP_137423928.1\|1551013_1552012_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP040098.1\|WP_137423939.1\|1564910_1565654_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226802
NZ_CP040098.1\|WP_137423934.1\|1558522_1560235_-\|bifunctional-sulfate-adenylyltransferase/adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|180124
NZ_CP040098.1\|WP_137423922.1\|1543298_1543769_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|349954
NZ_CP040098.1\|WP_170180236.1\|1563011_1563530_+\|DUF1285-domain-containing-protein	unknown	unknown	gnl\|CDD\|377736
NZ_CP040098.1\|WP_137423940.1\|1565673_1567482_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP040098.1\|WP_137423929.1\|1554476_1555295_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|376891
NZ_CP040098.1\|WP_137423930.1\|1555480_1555723_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425747.1\|1549934_1550927_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP040098.1\|WP_137423933.1\|1558272_1558383_+\|acyl-CoA-dehydrogenase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378854
NZ_CP040098.1\|WP_137423926.1\|1548278_1548539_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP040098.1\|WP_137423924.1\|1545264_1547244_-\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP040098.1\|WP_137423925.1\|1547283_1548189_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP040098.1\|WP_137423938.1\|1563924_1564563_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|376358
NZ_CP040098.1\|WP_137423932.1\|1557694_1558276_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|285548
NZ_CP040098.1\|WP_137423936.1\|1562538_1562988_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP040098.1\|WP_170180235.1\|1560973_1562371_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137423923.1\|1543725_1544511_-\|TlyA-family-RNA-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	1.53224e-115
NZ_CP040098.1\|WP_137423931.1\|1556481_1557285_-\|SAM-dependent-chlorinase/fluorinase	gnl\|CDD\|376645	pfam01887, SAM_adeno_trans, S-adenosyl-l-methionine hydroxide adenosyltransferase. This is a family of proteins, previously known as DUF62, found in archaebacteria and bacteria. The structure of proteins in this family is similar to that of a bacterial fluorinating enzyme. S-adenosyl-l-methionine hydroxide adenosyltransferases utilizes a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. This family used to be known as DUF62.	2.13363e-116
NZ_CP040098.1\|WP_137423927.1\|1548504_1549929_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NZ_CP040098.1\|WP_137423928.1\|1551013_1552012_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.09431e-121
NZ_CP040098.1\|WP_137423939.1\|1564910_1565654_+\|hypothetical-protein	gnl\|CDD\|226802	COG4359, COG4359, Uncharacterized conserved protein [Function unknown].	3.91816e-05
NZ_CP040098.1\|WP_137423934.1\|1558522_1560235_-\|bifunctional-sulfate-adenylyltransferase/adenylylsulfate-kinase	gnl\|CDD\|180124	PRK05537, PRK05537, bifunctional sulfate adenylyltransferase/adenylylsulfate kinase.	0
NZ_CP040098.1\|WP_137423922.1\|1543298_1543769_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|349954	cd18081, RlmH-like, 23S-rRNA-pseudouridine1915-N3-methyltransferase RlmH. 23S rRNA (pseudouridine1915-N3)-methyltransferase RlmH catalyzes the addition of a methyl group at the N-3 position of pseudouridine Psi1915 in 23S rRNA to form m(3)Psi1915. This family of proteins belongs to the SPOUT methyltransferases. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	8.84977e-65
NZ_CP040098.1\|WP_170180236.1\|1563011_1563530_+\|DUF1285-domain-containing-protein	gnl\|CDD\|377736	pfam06938, DUF1285, Protein of unknown function (DUF1285). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain- interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.	1.29214e-18
NZ_CP040098.1\|WP_137423940.1\|1565673_1567482_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.81563e-148
NZ_CP040098.1\|WP_137423929.1\|1554476_1555295_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|376891	pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. More recent studies show that BacA has undecaprenyl pyrophosphate phosphatase activity. Undecaprenyl phosphate is a key lipid intermediate involved in the synthesis of various bacterial cell wall polymers. Bacitracin, a mixture of related cyclic polypeptide antibiotics, is used to treat surface tissue infections. Its primary mode of action is the inhibition of bacterial cell wall synthesis through sequestration of the essential carrier lipid undecaprenyl pyrophosphate, C55-PP, resulting in the loss of cell integrity and lysis. The characteristic phosphatase sequence-motif in this family is likely to be the PGxSRSGG, compared with the PSGH of the PAP family of phosphatases.	6.49838e-82
NZ_CP040098.1\|WP_137425747.1\|1549934_1550927_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.63555e-98
NZ_CP040098.1\|WP_137423933.1\|1558272_1558383_+\|acyl-CoA-dehydrogenase-N-terminal-domain-containing-protein	gnl\|CDD\|378854	pfam12418, AcylCoA_DH_N, Acyl-CoA dehydrogenase N terminal. This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam02770, pfam00441, pfam02771. This family is one of the enzymes involved in AcylCoA interaction in beta-oxidation.	0.00050092
NZ_CP040098.1\|WP_137423926.1\|1548278_1548539_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	7.75063e-20
NZ_CP040098.1\|WP_137423924.1\|1545264_1547244_-\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP040098.1\|WP_137423925.1\|1547283_1548189_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	9.0417e-87
NZ_CP040098.1\|WP_137423938.1\|1563924_1564563_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|376358	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	8.69418e-53
NZ_CP040098.1\|WP_137423932.1\|1557694_1558276_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|285548	pfam08359, TetR_C_4, YsiA-like protein, C-terminal region. The members of this family are thought to be TetR-type transcriptional regulators that bear particular similarity to YsiA, a hypothetical protein expressed by B. subtilis.	5.65341e-33
NZ_CP040098.1\|WP_137423936.1\|1562538_1562988_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	1.84551e-85
NZ_CP040098.1\|WP_170180235.1\|1560973_1562371_-\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	2.30265e-21

>NZ_CP040098.1|WP_137423930.1|1555480_1555723_-|hypothetical-protein
MENTIQKDAFLDFLKGIDITAEGFGTRDTSGSKGNGTQMTETGNASNGDAEKVEKAREEKLERWMSDIKHFIRNINVDQL
>NZ_CP040098.1|WP_137423929.1|1554476_1555295_-|undecaprenyl-diphosphate-phosphatase
MDLLSAIALGVVQGLTEFLPISSSGHLVIGQHLLGWKEPNIFFDVCLHLGTFAAVLIVFWKDVGGLVKGGCAFAADSFKGRFDLADSNKRVFFLVFVGSIPTALMGFFGRHWVESLFMSLPAVGFNLLLTGTFLWITRYAASRTTERTSGGTTWRHALIVGIAQGFALAPGISRSGSTISAGLLVGLDREWAGRYSFLLFVPAVAGALALEIGDVDWSLVAPVPVFGGTLAAALTGTVALKLLLKTVRQGKFHLFAPYCWAVGLIILLSQAW
>NZ_CP040098.1|WP_137423928.1|1551013_1552012_-|ABC-transporter-permease
MKAYLLKRLLQIVPTLLGITFITFLIIQLAPGNPAVLKLQMAAQGEMAESAYTEQIIEDTKRLYGLDKPLPVQYLLWVKRVFTFDFGSSYKDHRDVWEKIAERLPITIQINVISIFLVYLISIPFGIYSATHPETFADRLFTLLFFFLYSLPSFWTAVLLIMFFGGGDFWDVFPVYGISSVGAETWPSWQRLADRLWHLVLPVTCLTYGGLAYLSRLTRAELLEVIREDYVRTARAKGLSERVVIFKHAFRNALLPIVTLLAFLLPAMFGGSVIIESIFSIPGMGQLGFEAVLSRDYPVIMAITTLSALLTLAGLLISDILYAVLDPRIQLR
>NZ_CP040098.1|WP_137425747.1|1549934_1550927_-|ABC-transporter-permease
MVWHHFRKRPLSVAGLWVTIFLVTVAVLAPVLANDRPVVVRADGGWSFPVFSAEAPRGAATWKDFWDPEGGMVQRGFLGEASLAVWPPVPYSPTEYDLLESLAPPNVRHLFGTDDRGRDVLSRMIHGARISLSVGFVAVGLALVIGITLGALAGYFGGWTDAVVSRLIEILLTIPTFFLIIAIIAFLPPSIYNIMAVIGLTGWTGVARFVRAEFLKLKSLDFITASRALGASDVRIIFLHMLPNAMAPVLVSAVFGIAGAILTESSLSFLGFGVPPPTPSWGDILSQSRDYIEFAWWLTTFPGLAIFVSITAYNLVGEGLRDAMDPKLFE
>NZ_CP040098.1|WP_137423927.1|1548504_1549929_-|exodeoxyribonuclease-VII-large-subunit
MTFPALFEETCVFTVSELNARIRSLLESEFPYVWVCGEVSNFRVPASGHFYFTLKDAGSQLRAVMFRAQQRRLRFEPEAGLQVLCQGRITVYEPRGDYQLIVDVMEPQGLGALQLAFEQLKKRLEAEGLFDPARKKPLPVVPQRIAVVTSPTGAAIRDILKVLQRSPYALIVTLIPVRVQGEGAAEEIARAIQQAGALRDTFRWDVILVGRGGGSLEDLWAFNEEAVARAVADCPIPTISCVGHEIDVTISDMAADLRAPTPTAAAQWIVGRLEGVERDLSSLSERLRSTLERRVQRHREQLHHLAKRLRDPRRRITDRRLYVDDRLERLVLAFSGRLARLRMTHGHLAERLKLHRPSQRIESLRDRVNAVFRSLCVDQGKLLERSRFQLEHRAAQLESLNPLAILGRGYSITHRMPDGKIVRCAREVKEGQRVQVRLWQGALRCVVEACIDSIDEPGQGRTERGEEEENNGEV
>NZ_CP040098.1|WP_137423926.1|1548278_1548539_-|exodeoxyribonuclease-VII-small-subunit
MARKKKTTEKFEEALKDLEKIVERLEKGDVPLEEAMEAFSEGVQLVRFCHQKLDEAEKTLQMLVKDQDDRWATAPFEPPKNEEENG
>NZ_CP040098.1|WP_137423925.1|1547283_1548189_-|polyprenyl-synthetase-family-protein
MESFDLEGYLAERRERVDRALDVFFPASSGLEKTVVEAARYSLFAGGKRLRPILCLAAAEVMGGTADDAMPAACALEMIHTYSLIHDDLPAMDNDDFRRGKPTNHKVYGEAVAILAGDTLLTEGFGLVADPNLGNNGNLPPEKRLQVIHILVKAAGYRGMIGGQVIDLEGETREMDFPTVKYMHIRKTGALISASLEIGGLLGGCEATDLQRLVRYGKHLGLAFQITDDLLDVEGDAVLMGKTPGSDVARNKKTYPALLGITLSREAAKEHVNQAVEALRTFDRRAEPLRAIARYLLERKS
>NZ_CP040098.1|WP_137423924.1|1545264_1547244_-|1-deoxy-D-xylulose-5-phosphate-synthase
MDTNGKALTSAGRLLAGIDSPEQLKTLSLEELYRLAAEIRRVLIDTVAQNGGHLAPNLGVVELTLALHFVFQAPHDRIVWDVGHQCYTHKLITGRRDRFHTIRQYGGISGFPKREESRFDPFGAGHASTSISAALGMATAKALKGCANRVVAVIGDGSMTGGMAFEALNHAGDLGRNLIVVLNDNEMSISPNVGAFSSFLSRKLSSRTLVSLKKEVEGTLNAIPGLGPNLLQILRRSEDSIRVFFTPSMLFRALKFHYIGPINGHRLERLIETFETARSLTGPVLVHVGTQKGRGYEPAERDPSVFHGVGCFDVKTGKVRKDSGPPPSYTSVFGRSLVELAEKDPRIVAVTAAMRQGTGLDLFAERFPQRFFDVGIAEQHAVTFAAGLAAEGYRPVVAVYSTFLQRAYDQIVHDVCLQNLPVIFAIDRGGIVGEDGPTHHGVFDLSYLRHIPNMTVMAPRDENELRRMLKTAVEHGGPAAVRYPRGTGLGVDLATPVEALPVGKGEILREGDHVLLAAVGVAVHEAMKAAQTLEEDGIQAAVVNARFIKPLDRDLLLHWAKHCRGRVITVEENAVQGGFGSAVLEMFADAGWFPRSMVRLGIPDRFVPHGAQAVLRRELEIDAEAVRSAALRLCRGEHGISAKSFCKDSQATSMALGCF
>NZ_CP040098.1|WP_137423923.1|1543725_1544511_-|TlyA-family-RNA-methyltransferase
MAGSSERLDKLLVERGFALSRERAQALILAARVRVDGQPVTKAGRMVSRESVIEIAGEGLRYVSRGGVKLEHALDHFAVDVSGLVALDVGASTGGFTDCLLQRGARRVYAVDVGYGQLDWKLRRDDRVVVIERANIRYLEPERVPEPVDIATVDTSFISLRLVIPRVTAFLRPQGRLVCLIKPQFEAGRSRVGKGGVVRDPAVHDAVCRDVTAFAGQCGLRVLGITPSPILGPKGNREFLMAAFKERDEDPTAFCGKNKPS
>NZ_CP040098.1|WP_137423922.1|1543298_1543769_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MKIRLLFVGKTNLPEVESGVARYVERIRRYAPITVRTVRAEKIGKKANEDLVRLKESERLLSAVEARSHLVVWDERGRLMTSEEFAAFLGDLEKRAVPETCMAVGGPLGFASTVRERANDLLSLSRMTFPHDLARLLVTEQIYRAFTILKGEPYHK
>NZ_CP040098.1|WP_137423931.1|1556481_1557285_-|SAM-dependent-chlorinase/fluorinase
MRPVITLLTDFGLEDGYVAAMKAVMLRICPEVLFVDITHTIPPQNVRSGAFVLETVVRDFPAGTVHLAVVDPGVGTERLPIAVKAADSFFVGPDNGLFSWILGKEPNWQVRILADSRFRRPAASSTFHGRDIFAPAAAHLARGVSFQELGPVCRPRIEPWFAIQRERDGLSGQVVHVDRFGNVVTNIHRDHLPEALTRSDYTIQAGPAVIERTVRTYGEAPPSLPVALVGSSGYLEIAVNQGNAAELLGLVEGQPVRVRFRYLDPPR
>NZ_CP040098.1|WP_137423932.1|1557694_1558276_+|TetR/AcrR-family-transcriptional-regulator
MDVFARKGFFLSKVSEIAEKAGVADGTIYLYFKNKDDLLISIFEEKMREINASFRDGLAQEPDALSRFRRFIRMHLEGFQSYPELASVFLVELRQSSRFMRDYKKVELENYLDLIGELVEQGQCEGVFRSDISVGLVKRLIFGTLDEVVSTWVLAGKPYELVALTEPVLDLLLHGIQKENDAIHKKPPEADVT
>NZ_CP040098.1|WP_137423933.1|1558272_1558383_+|acyl-CoA-dehydrogenase-N-terminal-domain-containing-protein
MNRLVDERHLEFVLYEQLRVEELCKHPRFRFFTGNI
>NZ_CP040098.1|WP_137423934.1|1558522_1560235_-|bifunctional-sulfate-adenylyltransferase/adenylylsulfate-kinase
MDGYGVPHGGELVDLVAGAERAEILKRLAGNLQSLTLSSRQLADLELLMNGAFSPLRGFMTSADYESVLDRMRLQNGLLWPIPICLDVSEAEARRLEPGQSVALRDSEGFMVAVLHVEDTWAADKTREAETVYGTRDVSHPGVDILFNRSGTHYVGGTVEGVQLPLHFAFKRLRHTPREIRAIYQKLGWRRVVGFQTRNPLHRAQFELTLRAMDRAKANLLLHPVARRARPGDIDYYTRIRCYLAAGRYYPPNMMLLSLLPLAMRMAGPREALLHALIRKNYGCTHFIIGRDHAGAGCRTDGCAFYEPEASMELAKDYEEELGIEIVPIEEMVYAVEEDSYMPASEVPPETTVRTLGLDEFHRRLREGKRVPEWFSFPEVIEELRRGYPPRHRQGFTIFCTGLSGAGKSTIARVLYARFLEMGGRPVTLLDGDIVRRNLSSELGFSKEHRDINVRRIGFVASEITKNRGIAICAPIAPYAATRRQIRQLIENYGGFVEVFVSTPLDVCEQRDRKGLYAKARAGLIKGFTGIDDPYEPPEAPEVMIDTTSLTPDEAAQEVLLFLERSGFIK
>NZ_CP040098.1|WP_170180235.1|1560973_1562371_-|radical-SAM-protein
MPKPPFVLLVNPWITDFAAFDLWAKPLGLLVLAALLRQGGCGVGFIDCLDRDDPFTNRHPEIMPGKDRAYGTGKYPRAPMAKPDAIQDIPRNYYRYGIHPESCLRRLAETPEPDMVWMTCSMTYWYPGVQLAVGLLRRVWPEVPVWLGGTYARLCPEHARRWTGATAVYTGTQVELPEVLKAATGFSVRNRPAWEILAKAPVPALDLLGRLRYAPILTGTGCPYRCPYCASGLLQPRRERRSADAVFGEIAGWHQLYGVADFAFYDDALLIDAEDSLKPALKRVARELPGLRFHTPNALHVRQLSAQWCDLLAAAGFRTLRLGLETTRPERQREWGGKVEETMFREAVKNLRASGFTAREIGAYLLCGLPGQKPSEVAEAIETVEAEGACPYLAEYSPIPGTPMWRQAVAESPYPVETEPLTHNNSFFAVRRPDFSLEDLEALKEKARRSRRRLLGDAAGGKHKR
>NZ_CP040098.1|WP_137423936.1|1562538_1562988_+|D-tyrosyl-tRNA(Tyr)-deacylase
MRAVVQRVSEAEVSVGGAGVGRIGRGVLVLVGVGREDGPEDVRYLADKIVHLRIFPDDDGKMNRSVVDIGGDVLIVSQFTLWGDCRKGRRPSFVDAAPPEKAHALYLCLVEAVRSHPVRVATGRFQETMAVKLVNDGPVTLLLDSRKNF
>NZ_CP040098.1|WP_170180236.1|1563011_1563530_+|DUF1285-domain-containing-protein
MTEHRKSGESEAGSEIIPSHIRVDAEGVWTYEGREIFRKDILDLFYERLRLNADGVYGLKWEGRFHALEVQDTPFVITRVDRRIDPETQREVIELTLRHLDRKEILDPRTLWVGRENVLYCRIRDGAFPARFSRPAYYQIAQWIQEDPENGRFFIECDGKRFPIRACDPALS
>NZ_CP040098.1|WP_137423938.1|1563924_1564563_-|class-II-aldolase/adducin-family-protein
MLTETRLREAIVWVCRRLERKGLVAASDGNVSCRLCEECILITPSGRAKSELVPLDLLVTDLDGNVLRGRGKPSTEIRMHLLVYEKRPDVQAVVHAHPPLLTALSLAGKAFPAAALPEVWAILGPVPTAGYATPGTDEVPRSISPFVERHDAILLERHGVLTAAENLKKAYYLVEKMEHAAATFFYARLLSGAPLQSLPPEALQALKKHAAT
>NZ_CP040098.1|WP_137423939.1|1564910_1565654_+|hypothetical-protein
MAQRPRYRALFSSDWSECLAPSGPFDCIFFNYPELKEPLTAIFRRYTSNVITLGEAIGRIQGLMPGPVTEAMMDAYLEASFETYPGAAPFIRWCHENHILFMLNTTGMKGTYQRILAKSLLPHVSALSAHPFISYPEGPTDPEVSLPLHEIQDKAANSAAVAEKYGVAAGRIIVMGDSGGDGPHFAWGAQMNALLIASRPKPSLEKYCAERGIRIHHRIGTADDPKKGNFMEMTGWVERYLKANERQ
>NZ_CP040098.1|WP_137423940.1|1565673_1567482_-|ABC-transporter-ATP-binding-protein
MRLGEGAGSATVLQWFLKEKMLVGGLVVSLALQAAIAVVEPWPLQVVFDCVIGRAPLSWWLSPWEERLSAEPRHELLFIMVFALIAFAAATGAALYIQNQLLTRLNQTVVQRLRVTFFGHVVQLPIAFFQRMGPGEIISRLTADTADLQPLIEGALILMFRSIPTFLGIFVLMAWIDPPLALLVVAAAPILAFGTVYFGKRVKQATRRQRSYEAEVAAVTEVATRTQKCLKILGLCEQATRRLEERCLQSLEAAVEAGSWQGGYTATVHITLAGGIAAVLLVGVYRIEAGRISAGELLVFMSYLRSIYKPVRELSKYFNKISKGLACKERIEEILALTPCQLGVCGDSKDAVPMPPFRYVIRFEGVAYAYEPNRPVLEDITFTVRKGQKIGIVGDSGSGKSTLLNLIPRFLDPSEGCIYIDDRDIRTFTLESLRSQVAIVPQEHIIFPATVLENIALGRPESPAGRDEILRAAKEANAHSFITRLPQGYDTLLGPSGTELSIGQAKRIHIARALLRNAPIILLDEPTAGLDPSSESKVMEAFDRLMRRGTLFVVTHYLPLIANADAILVLERGRIVQQGRHDELVQEGRYAELWADFVRHLE

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Crispr_ID: NZ_CP040098_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_18

1788591-1788721

Orphan

Consensus_repeat	Method
TCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_18

>merge|NZ_CP040098|18|1788591-1788721|CRISPRCasFinder
TCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGGGACGTAACTGATTGACATACATTAGTTTTTTCACCCTCACCCCAAACCCTCCCCCTACTCCCCTCCCCTCGTGGGAGGGGATTAAGGGGAGGGGG

>NZ_CP040098|18|18|1788591-1788721|CRISPRCasFinder
TCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGGG	ACGTAACTGATTGACATACATTAGTTTTTTCACCCTCACCCCAAACCCTCCCCCTAC
TCCCCTCCCCTCGTGGGAGGGGATTAAGGGGAGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137424087.1\|1776980_1777346_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376163
NZ_CP040098.1\|WP_137424095.1\|1787026_1788067_+\|DUF4236-domain-containing-protein	unknown	unknown	gnl\|CDD\|379423
NZ_CP040098.1\|WP_137424091.1\|1782989_1784786_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|226003
NZ_CP040098.1\|WP_137424094.1\|1786751_1786970_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226003
NZ_CP040098.1\|WP_137424101.1\|1797741_1798785_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP040098.1\|WP_137424102.1\|1799631_1800081_+\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|376892
NZ_CP040098.1\|WP_137424099.1\|1794585_1795515_-\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP040098.1\|WP_170180418.1\|1785828_1786707_+\|virulence-protein-RhuM/Fic/DOC-family-protein	unknown	unknown	gnl\|CDD\|379118
NZ_CP040098.1\|WP_137424088.1\|1777342_1778392_+\|virulence-RhuM-family-protein	unknown	unknown	gnl\|CDD\|379118
NZ_CP040098.1\|WP_137425765.1\|1800154_1801015_+\|agmatinase	unknown	unknown	gnl\|CDD\|212539
NZ_CP040098.1\|WP_137425763.1\|1795665_1796535_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792
NZ_CP040098.1\|WP_137425764.1\|1798940_1799480_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
NZ_CP040098.1\|WP_170180247.1\|1789004_1791371_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NZ_CP040098.1\|WP_137424090.1\|1780943_1782224_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP040098.1\|WP_137424089.1\|1779487_1780354_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_CP040098.1\|WP_137424092.1\|1784879_1785689_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341149
NZ_CP040098.1\|WP_137424098.1\|1793601_1794582_-\|adenine-nucleotide-alpha-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238951
NZ_CP040098.1\|WP_137424097.1\|1791673_1792315_-\|DUF1847-domain-containing-protein	unknown	unknown	gnl\|CDD\|378090
NZ_CP040098.1\|WP_170180248.1\|1796811_1797663_-\|NAD(+)-kinase	unknown	unknown	gnl\|CDD\|223139
NZ_CP040098.1\|WP_137425762.1\|1778570_1779491_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137424087.1\|1776980_1777346_+\|hypothetical-protein	gnl\|CDD\|376163	pfam18740, EC042_2821, EC042_2821-lke REase. REase Fold Fused to HEPN (EC042_2821) and an N-terminal wHTH in some.	0.000236116
NZ_CP040098.1\|WP_137424095.1\|1787026_1788067_+\|DUF4236-domain-containing-protein	gnl\|CDD\|379423	pfam14020, DUF4236, Protein of unknown function (DUF4236). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.	2.35917e-24
NZ_CP040098.1\|WP_137424091.1\|1782989_1784786_+\|DUF262-domain-containing-protein	gnl\|CDD\|226003	COG3472, COG3472, Uncharacterized conserved protein [Function unknown].	1.33909e-39
NZ_CP040098.1\|WP_137424094.1\|1786751_1786970_+\|hypothetical-protein	gnl\|CDD\|226003	COG3472, COG3472, Uncharacterized conserved protein [Function unknown].	5.03744e-10
NZ_CP040098.1\|WP_137424101.1\|1797741_1798785_+\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.8774e-62
NZ_CP040098.1\|WP_137424102.1\|1799631_1800081_+\|adenosylmethionine-decarboxylase	gnl\|CDD\|376892	pfam02675, AdoMet_dc, S-adenosylmethionine decarboxylase. This family contains several S-adenosylmethionine decarboxylase proteins from bacterial and archaebacterial species. S-adenosylmethionine decarboxylase (AdoMetDC), a key enzyme in the biosynthesis of spermidine and spermine, is first synthesized as a proenzyme, which is cleaved post translationally to form alpha and beta subunits. The alpha subunit contains a covalently bound pyruvoyl group derived from serine that is essential for activity.	1.92491e-32
NZ_CP040098.1\|WP_137424099.1\|1794585_1795515_-\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	1.47372e-105
NZ_CP040098.1\|WP_170180418.1\|1785828_1786707_+\|virulence-protein-RhuM/Fic/DOC-family-protein	gnl\|CDD\|379118	pfam13310, Virulence_RhuM, Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	2.91938e-35
NZ_CP040098.1\|WP_137424088.1\|1777342_1778392_+\|virulence-RhuM-family-protein	gnl\|CDD\|379118	pfam13310, Virulence_RhuM, Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	5.0892e-169
NZ_CP040098.1\|WP_137425765.1\|1800154_1801015_+\|agmatinase	gnl\|CDD\|212539	cd11593, Agmatinase-like_2, Agmatinase and related proteins. This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	1.1991e-111
NZ_CP040098.1\|WP_137425763.1\|1795665_1796535_+\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	4.18363e-25
NZ_CP040098.1\|WP_137425764.1\|1798940_1799480_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.61845e-36
NZ_CP040098.1\|WP_170180247.1\|1789004_1791371_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	4.79457e-45
NZ_CP040098.1\|WP_137424090.1\|1780943_1782224_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.6891e-144
NZ_CP040098.1\|WP_137424089.1\|1779487_1780354_+\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	2.85461e-08
NZ_CP040098.1\|WP_137424092.1\|1784879_1785689_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341149	cd17260, RMtype1_S_EcoEI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.EcoEI TRD1-CR1, S.EcoJA17PI TRD1-CR1, S.EcoJA23PI TRD1-CR1, and S.StyLTIII TRD1-CR1. Escherichia coli A58 S subunit (S.EcoEI) recognizes 5'... GAGNNNNNNNATGC ... 3', Escherichia coli UCD_JA17_pb S subunit (S.EcoJA17PI) and Escherichia coli UCD_JA23_pb S subunit (S.EcoJA23PI) recognize 5'... GAGNNNNNNNGTCA ... 3', and Salmonella typhimurium LT7 S subunit (S.StyLTIII) recognizes 5'... GAGNNNNNNRTAYG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example: S.EcoEI TRD1 and S.StyLTIII TRD1 recognize GAG/CTC, S.EcoEI TRD2 recognizes GCAT/ATGC, and S.StyLTIII TRD2 recognizes CRTAY/RTAYG. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It also includes TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases, such as Pseudomonas putida Jo 4-731 Type IIG restriction enzyme/N6-adenine DNA methyltransferas RM.PpiI and Porphyromonas macacae COT-192 OH2631 RM.Pma2631ORF8845P, as well as type I DNA methyltransferases such as Chlorobium limicola M.Cli245ORF128P. RM.PpiI recognizes the sequence 5' ... GAACNNNNNCTC ... 3'.	2.90082e-76
NZ_CP040098.1\|WP_137424098.1\|1793601_1794582_-\|adenine-nucleotide-alpha-hydrolase-family-protein	gnl\|CDD\|238951	cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.	1.76269e-45
NZ_CP040098.1\|WP_137424097.1\|1791673_1792315_-\|DUF1847-domain-containing-protein	gnl\|CDD\|378090	pfam08901, DUF1847, Protein of unknown function (DUF1847). This family of proteins are functionally uncharacterized. THey contain 4 N-terminal cysteines that may form a zinc binding domain.	8.91101e-83
NZ_CP040098.1\|WP_170180248.1\|1796811_1797663_-\|NAD(+)-kinase	gnl\|CDD\|223139	COG0061, nadF, NAD kinase [Coenzyme metabolism].	2.87577e-80
NZ_CP040098.1\|WP_137425762.1\|1778570_1779491_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	7.95372e-16

>NZ_CP040098.1|WP_137424095.1|1787026_1788067_+|DUF4236-domain-containing-protein
MAFRFWRRIRIAPGVTLNLSKSGGSLSFGPRGAKFTIGPRGKRATVGIPGTGLFYTTTLPNGRSSGRRSASYSAPAVPTVRPEDRLTLGFFKRLITPDDEEALVDGCLELVLGNETKALEHLEKALHLADGAYLAGFVALKQERLEKAATYLATAAEKHSRLGRYFSKYGISARLSLPITDEVFAHVGPDLRGVLLGLVEVYERQKRWKDAIACLERLHQLEPDDVLVKVSLAELLLTARPGNEKLLQRIVRLTQGIENETPVHTALLLYKARALRGLGLLIAARDTLTGALRRKKGRSEELLRALRYERALVYEALGKPRRARAEFEKLYAEDPDYEDVAARLGL
>NZ_CP040098.1|WP_137424094.1|1786751_1786970_+|hypothetical-protein
MCINSKGTPLNQADFILTLMSVFWDEELRQMYACHALPDGWHGMDYATFLEERRKRIAQVIRSGFEKLKVES
>NZ_CP040098.1|WP_170180418.1|1785828_1786707_+|virulence-protein-RhuM/Fic/DOC-family-protein
MAALFDRDKSVISRHLRNIYREGELDRGATVAFFATVQQEGGRTVSRQVEYYNLDAIIAVGYRVNSKRGTQFRIWATGVLHDHILKGYTVNAQRLAALQQTIRLISNVVDQSSLGGDEAAAMLRVLRDYADALNVLDAYDHGKVPEPEKASKKAEPISLEEARRVVAALREHFGGSGFFGREKDDSLDSSIAAIFQTVDGHELYPSIEEKAAHLLYFVVKNHPFLDGYKRIGAAYDRDYCVDLVELSAFLHATQPEVAEALDLDHDSPIRRKFDLVPKLQLGNTTVQKLQLR
>NZ_CP040098.1|WP_137424092.1|1784879_1785689_+|restriction-endonuclease-subunit-S
MIRGLKPYPAYKPSGVELLGQVPEHWEVRRLKRIARLNPSKSEVPLAMRDDPAAFLRMEHVGSDGRFDASEVRPVSDLWNGFTFFRRGDVIVAKITPCFENGKGACLQNLPTSVGFGPTEFHVIRPSAAVTSSYLYRVTTLSQFRQLGADEMTGAAGQQRVPAEFIANFLIPLPPLPEQTALVEYLDAETAKIDTAVFASRREIDLLREYRQRLIADVVTGKLDVREVAAQLPEEPADEEEPLGTEDTEATADEETDNNEETADEEEGR
>NZ_CP040098.1|WP_137424091.1|1782989_1784786_+|DUF262-domain-containing-protein
MKDAQKPDHVSLTTLVHWLGEGRFVIPDFQREFEWKPWDIRELVRSIFLDYYIGSLLLWKGKPENFAALVCEPIYGHHGSGDPVHIVLDGQQRLTAMHYVFFAPDKPLPNRSNRFLYFIRVDRFMEGAYDEAFEYDWTRSGLNLLADPVAQYEHHMFPLSVVGQGGWELPNWVQGYEKHWREKEQAASSAGDVATAERAGLRARDAHSFGQHLKGITEQYQIAYIELDRNLEIDKVCYIFTQINSRGIRLDVFDLVNALLKPKDLQLKQLWRDAAPRLDFVETERMNVYILQVMSILCQAYCSPKYLYYLLPGQEKKVREPDGSLRKEVLVPDVGDFERRWNEAVEAVERAIALLRHPQEFGAISSNYLPYVSILPAFAALQSTLRALPAARQLDAQRKLRHWYWASVFTNRYSGSVESTTARDYLAVKAWFENDAAKPDLIADFRARFRTLDFRRETKRGTSVYNGIFNLLVLRGARDWMTGNVPQYGDLDDHHIVPKSWGKEHGLGTLIDCILNRTPLTADTNRKVINDRLPNEYLPELISANGEVRVRATLETHFISPAAFDILLRVPFTKEDFEAFLAERQSTLQAAIEDLLVK
>NZ_CP040098.1|WP_137424090.1|1780943_1782224_+|HlyC/CorC-family-transporter
MLYLELLIVLFLTLMNGVLAMSELAVISSRKSRLEHLANQGSRGARAALRLIDDPSRFLSTVQIGITLVGIIAGAFSGATLGQRLGAWLNAFPLISPYGGSVGIGITVVGITYLSLVIGELVPKRIALTQPERVACLVAGPMRGLSLVAAPAVWVLHISTERVLRLLGLAGARETTVTEDEVKSLIAEGTQAGIFVPQEQKMIEGVLRLADRPVRLIMTPRIQIVWVDVKSDKNTIIEMVRSHRFSRLLVCDGTVDHPVGVIHTKNLLPEALGCEDVTLSELVTPILYVPDRTTVLKLLNRFKKEKVHLAVVVDEYGTTEGLVTLTDVFEAIAGDLPERGEDDGPEIVQRDDGSWLADGTVPTDEIETLTGIYMGENVETLAGFVLDHLGRIPKAGASFNHGNARFEVVDMDGNRIDKVLIAVDRK
>NZ_CP040098.1|WP_137424089.1|1779487_1780354_+|HNH-endonuclease
MSFSKDVVDLALVAAGRCCCICHKFCGVRIETHHIRPVSKGGDKSFENCIPLCFDCHAEVEHYNDQHPRGRKFSESELRKHRDTWFSKVEEMNTLTPLPHDAPQVIQAVSGKGNMVAGRDLNIRTERVVGKAVVQTDPGGKHISNTTARKIQDLVKDYIDIHTTAGKDTQRAAQRIWSSLRNEFNVTSYKEIPAQDSDRAIQWLQAQIAMARPKIRRRAPDKWKESLYKPIYARAGELGISKDDLYLLAQERLALKKPIRSMKELTQRDLQRLHHVMIYEVKKSGSKP
>NZ_CP040098.1|WP_137425762.1|1778570_1779491_+|ADP-ribosylglycohydrolase-family-protein
MIHARHTQETGDLDVHRTNVGGESVDLGGFRQYVHRRESNRRVEWAMELDTSSFTDRLAELFAPVKQVAMLLNLGIGLDDQDHPLPESMPEIHTYELLADGQSLLRMSRRRDSKLQLDRLDHEHPVFREVIKAMVLLFTTTETIHPEDFEGLDEAIAHAIRQGCDSRDLYEQSVTWAEDMKVDGSLLEVVRGPAESPPADYVRHQGWVLTAFRNALWQLLHATNLEEAVVDTVMRGGDTDTNAAICGAILGAVHGRDAVPHQWVDSLLNCRPAAGQPNVHRPRPECFWPVDALELAERLLKSGEAR
>NZ_CP040098.1|WP_137424088.1|1777342_1778392_+|virulence-RhuM-family-protein
MTILPANPTRSEILIYQTEDGRTRIQVRMEDETVWLTQADMAQLFQTTSQNITLHLKNIYQEGELDESATCKDFLQVQSEGGRQVQRSRKFYNLDAVISVGYRIKSHVATRFRQWATQRLREYIVKGFTLDDERLKQAGGGNYFDELLARIRDIRASEKVFWRKVLDIYATSIDYDPSTEMSRRFFQIVQNKMHWAAHGHTAAEIIAARADAEKPHMGLTSWTGAKPTQADSEIAKNYLTIEELDTLNRIVTIYLDFAELQALNRKPMYMKDWIAKLDEFLKVSERDILTHAGKISHEAAIEKARMEYEKFRKRSLEEPSPVERHFIEAVKEVKKLEQKKPRNTRKTRK
>NZ_CP040098.1|WP_137424087.1|1776980_1777346_+|hypothetical-protein
MKQQNSRKNSPPKPPSEPEITSWVRENQILQGPVFKALQGLRKLLTELHGRKFTSHAFEAVIWHNNIKENSRLCWISEEGVLTKYSREVIAMIRRLSKKQVDDAISAYKEHMRARSRRKKV
>NZ_CP040098.1|WP_170180247.1|1789004_1791371_-|esterase-like-activity-of-phytase-family-protein
MIEVPVKKGVFRTLFRREVKGIIVAGALLAAGLLSGSAGMSNDAVPAIPSVSNPSMYFNRVASFPVCSQTGSSCESSTETAAEITAASTDGMTLIYTNSPAKQIGFIDITNPASPMAKGSLAMTGEPTSVAVLDKYALTAVNTSADFVNTSGILAIVDIDRQTVSREIALPGQPDSVAVSKDGKYAAIVIENERDEDLGTGAPPQLPAGCLVIVDTVGTPDTWTTRQVDLTGVATLYPTDPEPEYVDINDDNIAVVTLQENNHIVLVDLASGKVTGQFSAGTVNLTNIDTIDERPNLITLSTSKNDIKREPDGVTWLSTTRFATANEGDLDGGSRGFTIFSIDGAVVYDAGNTLEHAVARIGHYPDRRSDAKGNEPENVEFSRFEGTDYLFVASERSSIVAVYDMSKPDVPAMKQMLPAGMGPEGILAIPKRNLLIASSEEDSREDGFRSVVNIYQYQKAAPTYPTLVSADRPDGTPIPWGAMSGLAAGATDAIVYGVHDAFYRGSRIYTIDRTKTPPVITSEIVITDPNGKIPALAPTLPDADDPNTFDDTDLPAMTNADGTVNFDVEGISVASTGGFWLASEGSGTVGDKKYPVKTGNLIVKVDSAGVIEEIIMLPAALNALQQRFGLEGIAESDGKLIVALQRPWAGETNPRIGVYDLAAKTWKFMNYPLDLPVSPNGGWVGLSEITALGSNRFLVVERDNQGGPDARIKRIYQIDLTGKADGDTLSKVLVRDLIDDLKAPGAHIIEKVEGLAVLPGGDAMIITDNDGLDDNSGETQFINLGEIQ
>NZ_CP040098.1|WP_137424097.1|1791673_1792315_-|DUF1847-domain-containing-protein
MSRCAECGIYACRVGKLDKAPEHCPMLNCKEVYEEARVALQEPDTLRLMHAAAWTEATGYRRWTRMEEILEFSRKRRFTKLGLAFCSGLVKEAAEVAKILKEAGFIVESIICKTGSVPKEEIGIREDEKIRPGQFEPTCNPVAQAKILNAAGTELNIALGLCVGHDSVFFKHSNAPVTVLAAKDRVLAHNPLGVIYASHYHGVRFSRFKQGTP
>NZ_CP040098.1|WP_137424098.1|1793601_1794582_-|adenine-nucleotide-alpha-hydrolase-family-protein
MASGKPFQEDGHRPPKLSRGAKCTRCRGQAVISLPSHHALFCPDCYLRFFQNAVRRAMKQSAVHPETPLMVAVSGGKDSLAAWSVLHEMGYRTRGLHLDLGIEGFSEASADAIERFAAPRGLAWSRYALEDLIGFSIPEIRRRTRRKICSVCGLLKRQLLNRLTVREGFGVLVTGHNLDDEAGRLLGNLVRHRTEYLEKQSPFLPSTHPRLPVKIKPLYRVEAHEIRIYCELSGIEPLQASCPLSRGATSHVFKEALAFLEMKMPGTKRDFLFTYLERNRPAKAAETFGTCRECGEPCYETLCSVCNLLGQLKDRDAKRSRDEPSS
>NZ_CP040098.1|WP_137424099.1|1794585_1795515_-|polyamine-aminopropyltransferase
MDETETLYAEPITATMGRRFRIRKMIHTRETPYQKVDVVETHEFGVTLFLDRRFQTSERDEFFYHESLVHPPMLLHPNPRDILIIGGGDGGALEEIAKYRTVRRITMVELDPEVVDVARRYLQTICGKAFEDHRVELVIGDGRRFMEETDRTYDVILLDLTDPMEPSKYVYTREFYEICRSRLNTGGILGLHNDSAFFFPEAFNVISKTLDAVFPHKRQYLAYILGYMLDFVFSACSSEPLPDLDTGAVRRRMGERGIGPLQYYSAQRHPLLFALPGYVQSILERPCEISTDAAPFVLVGAEGFQFPGE
>NZ_CP040098.1|WP_137425763.1|1795665_1796535_+|radical-SAM-protein
MHYEGIIIRPPSEADSIILQVTVGCSHNKCTFCGTYKGKRFRIKDDAVIDEDIRYAARNFSFLRRVFLTDGDALIIPQPRLVRIFSKIREEMPWIQRIGLYGNAKSIIRKSPEELAELRNLGLGIVYMGLESGDPETLKAIRKGASPERMVEAGRRVRDAGIKLSVTVLLGIAGRERSSEHARATGDVLSAMDPHYVGALTLMLLPNTELGQKAACGAFELMDPPEMLAELREMIAHTHLSGGLFLSNHASNYLPLKVRMPAEKAKALAAIDAALRGDVRLKPEWMRAL
>NZ_CP040098.1|WP_170180248.1|1796811_1797663_-|NAD(+)-kinase
MKRIVLIYKRGRSDAASLARRMKQWMEGLGLDVMSQQNSAIPDFQAEIDEPELPADTDAVVVLGGDGTFLSVARAVRDRPIPVVGVNLGGLGFLTEIAHESCFSELGEILEGRYEIEERMRLQVSLWREGREVFSQTVLNDAVVNKGALARIVNFHTSIDGRYLTHYRADGIIVATPTGSTAYNLSAGGPIVYPTAWDVIVTPICSFTLTNRPIILPGSARIELTLDDKAQDVALTCDGQIGRKLLPQDRILITAAPAPLRLIKSPSMDYFDILRTKLKWGTN
>NZ_CP040098.1|WP_137424101.1|1797741_1798785_+|diguanylate-cyclase
MKRRKVSCEMKRNTVAPSEVSRMDSQAKNIFAAPQCILVVDDEVHIRELVAESLSLMGHRVTTAEDGLDAIEKIQNGSFDIIITDLDMPRMDGLELIKAVHADHKNIDTIAIMGHAVKYKYTEVIGAGAADFITKPFSLDKLEAKLQRLLRERWMRRELEELAIRDPLTGLFNRRHFKSILTQEAVRAIRYGHPLYLFFIDIDSFKEYNDQKGHQAGDRLVILLADILRTSIRENVDKAFRYGGDEFCVILPHLTTPQALKVAERIRSKYNKLKPQPTTLSTGIASFSGNLDNLAEAIEDLVQRADRALYEAKQARGGDCVCVNGIDPPEPIPRLLGNSGTGGGNAR
>NZ_CP040098.1|WP_137425764.1|1798940_1799480_+|helix-turn-helix-transcriptional-regulator
MRIGEKLRRLRTETGLTQEELANRAYLTKGFISQLERDLTSPSIATLKSILDVLGLDLAEFFRDTPQPTVVGRKKARVLSSVSTDDYTVHFLLPRAMGRLMDPVLVILAKGAKTPQETSHEGEEFGFVIRGAVTLWLDTKAHKLGQGDCFYFKSSTPHRVENTGKGAAKILWVVTPSRF
>NZ_CP040098.1|WP_137424102.1|1799631_1800081_+|adenosylmethionine-decarboxylase
MGVKKPEFGFGVHLMMDGYGCHRDLLEDIGLIYNFLDEYPAAMDMTKIMPPYVFRYNGAVPEDWGISGFVLIAESHISIHTFPEKLYLSVDIFSCKPFDVDKAVEAIRDQFQIKKYEMNVLDRGQEFPNTLSASAQVVRMDRSLRQRTR
>NZ_CP040098.1|WP_137425765.1|1800154_1801015_+|agmatinase
MGLTSPEADFESARFVVLPVPYDGTTTFRAGTREGPRAILHASRELESYDEETGEEPHRRGIATLDELAITVASPKEMVDRVRDAGRILFEAGKLPVMLGGEHLLSLGMIEAAAAFHPRLTVLQLDAHADFKDHYQESPYSNACVMRRVWERVPVVQAGIRSLTREEHHFLIENRVPSYFARDLHEVPERLDEVPEDLGPEVYVTIDLDVFDPSVMPSVGTPEPGGLTWYQVLRLLRRVTETRRVVGFDVMELLPQPHLAAPDFLAARLVHKMLAYISLDISRRPC

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Crispr_ID: NZ_CP040098_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_19

2118320-2118390

Orphan

Consensus_repeat	Method
CGTAGGAGCCGGCTTGCCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_19

>merge|NZ_CP040098|19|2118320-2118390|CRISPRCasFinder
CGTAGGAGCCGGCTTGCCGGCGACGCAAGTCGTAGGAGCGATCCAAGTCGTAGGAGCCGGCTTGCCGGCGA

>NZ_CP040098|19|19|2118320-2118390|CRISPRCasFinder
CGTAGGAGCCGGCTTGCCGGCGA	CGCAAGTCGTAGGAGCGATCCAAGT
CGTAGGAGCCGGCTTGCCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137424530.1\|2111044_2111806_-\|creatininase-family-protein	unknown	unknown	gnl\|CDD\|376872
NZ_CP040098.1\|WP_170180281.1\|2115789_2117169_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273349
NZ_CP040098.1\|WP_137424552.1\|2128162_2129236_+\|NADH:flavin-oxidoreductase/NADH-oxidase	unknown	unknown	gnl\|CDD\|239242
NZ_CP040098.1\|WP_137424546.1\|2123331_2123610_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137424548.1\|2123642_2124575_+\|acyltransferase	unknown	unknown	gnl\|CDD\|237584
NZ_CP040098.1\|WP_170180280.1\|2108937_2111052_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP040098.1\|WP_137424533.1\|2113779_2115081_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181000
NZ_CP040098.1\|WP_137424526.1\|2104844_2105186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240162
NZ_CP040098.1\|WP_137424531.1\|2112833_2113262_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|131339
NZ_CP040098.1\|WP_137424539.1\|2117418_2118144_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP040098.1\|WP_137424528.1\|2105202_2108697_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
NZ_CP040098.1\|WP_137424550.1\|2125408_2126173_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238564
NZ_CP040098.1\|WP_137424544.1\|2122476_2123178_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NZ_CP040098.1\|WP_137425792.1\|2126291_2127506_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP040098.1\|WP_137424543.1\|2119895_2120594_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP040098.1\|WP_137425790.1\|2112116_2112767_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|280058
NZ_CP040098.1\|WP_137424553.1\|2129905_2131096_+\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
NZ_CP040098.1\|WP_137424535.1\|2115114_2115780_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP040098.1\|WP_137425791.1\|2120747_2122475_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236185
NZ_CP040098.1\|WP_137424541.1\|2118589_2119870_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137424530.1\|2111044_2111806_-\|creatininase-family-protein	gnl\|CDD\|376872	pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyzes the hydrolysis of creatinine to creatine.	4.53339e-66
NZ_CP040098.1\|WP_170180281.1\|2115789_2117169_-\|hypothetical-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	5.37911e-90
NZ_CP040098.1\|WP_137424552.1\|2128162_2129236_+\|NADH:flavin-oxidoreductase/NADH-oxidase	gnl\|CDD\|239242	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.	0
NZ_CP040098.1\|WP_137425792.1\|2126291_2127506_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	6.04282e-144
NZ_CP040098.1\|WP_137424548.1\|2123642_2124575_+\|acyltransferase	gnl\|CDD\|237584	PRK14014, PRK14014, putative acyltransferase; Provisional.	5.25189e-173
NZ_CP040098.1\|WP_170180280.1\|2108937_2111052_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.43193e-96
NZ_CP040098.1\|WP_137424533.1\|2113779_2115081_-\|adenylosuccinate-lyase	gnl\|CDD\|181000	PRK07492, PRK07492, adenylosuccinate lyase; Provisional.	0
NZ_CP040098.1\|WP_137424526.1\|2104844_2105186_-\|hypothetical-protein	gnl\|CDD\|240162	cd05126, Mth938, Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.	6.7846e-26
NZ_CP040098.1\|WP_137424531.1\|2112833_2113262_+\|hotdog-fold-thioesterase	gnl\|CDD\|131339	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD. This member of the domain family TIGR00369 (which is, in turn, a member of the pfam03061 thioesterase superfamily) is nearly always found adjacent to other genes of the phenylacetic acid degradation pathway. Its function is currently unknown, but a role as a thioesterase is not inconsistent with the proposed overall pathway. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.	2.51437e-29
NZ_CP040098.1\|WP_137424539.1\|2117418_2118144_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	3.22268e-108
NZ_CP040098.1\|WP_137424528.1\|2105202_2108697_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
NZ_CP040098.1\|WP_137424550.1\|2125408_2126173_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238564	cd01144, BtuF, Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	4.4611e-51
NZ_CP040098.1\|WP_137424544.1\|2122476_2123178_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	4.60984e-105
NZ_CP040098.1\|WP_137424543.1\|2119895_2120594_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.67593e-79
NZ_CP040098.1\|WP_137425790.1\|2112116_2112767_+\|LysE-family-transporter	gnl\|CDD\|280058	pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.	9.7332e-25
NZ_CP040098.1\|WP_137424553.1\|2129905_2131096_+\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.62855e-56
NZ_CP040098.1\|WP_137424535.1\|2115114_2115780_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	8.80363e-50
NZ_CP040098.1\|WP_137425791.1\|2120747_2122475_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236185	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP040098.1\|WP_137424541.1\|2118589_2119870_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP040098.1|WP_137424539.1|2117418_2118144_+|DNA/RNA-nuclease-SfsA
MAHRGVCHRFSVPLVPGRLLRRYKRFLADVMLDDGRVVTVHCPNSGSMKGCLEEGAPVYCSPNASPKRRTAYTWEMIRINGGWVGINTGIPNILAARAAENRALPLFKTVQRVAREVRLGEHSRIDLKVDSAEGPIFVEVKNVTLVEDGTALFPDAVTSRGTRHLEELMHLRQRGIAAAMFYVVQRGDAVRFAPADAIDPVYAAACRKAVRAGVVMTAVRARVTPERICLERLLPLAFEIP
>NZ_CP040098.1|WP_170180281.1|2115789_2117169_-|hypothetical-protein
MPNKGLHSLSPWTVPIIGFLGLILTGSALLLAFPTARGDHIPAVDALFMATSATCVTGLSLYDIGREFTLGGQLTILGLIQTGGLGIMLFSTVFLMVLGRGVTFRSRFLLQDIYTHGPSADLLNFLKHILLFTVAFESLGTLALFVRFLDRFEPLQAFYLAAFHAVSAFCNAGFSLFSDSLMAYVSDATVNVTVAGLIIAGGLGFLVLYEVRRIFTAPQGGHLLLRWRRLSLHTKLVLVMTSALLAGGTAFFLMTEWSGVLRPLPAADRLLAAFFQSTTTRTAGFNTLDFSAMTNVTLMGTIILMFIGASPGSAGGGIKTTTLGVLVALSRTRIGGTPMVHAFKRSISEETINRAFGVTVLSLLIVTIGTVLVLLMETGSVPFPQSRGRFMEILFETTSAFGTVGLSMGITPTLGTWSKVILSVIMFTGRLGPLVIAMAITAREVKGHYVYAEEPVMIG
>NZ_CP040098.1|WP_137424535.1|2115114_2115780_-|TrkA-family-potassium-uptake-protein
MRHIAIIGLGNLGFYLGQELTSKGFDVLGIDKEKDVVQRAKTDIAQAVLADATDKDTLLALGIGATELAVVTIGTNMLASILATFHLKEIGVKEVYAKALSSEHERILRRIGADRILFPEKDLALSLARRIANPNMLEYLPFIEDHGIFELGPPESFVGKTLRDLDLINRYGIQVIAIRDGRSGNLIFIPKADFVIREADVLILLGPNTALDQLSKESDES
>NZ_CP040098.1|WP_137424533.1|2113779_2115081_-|adenylosuccinate-lyase
MIERYTRPEMGRIWTLENKYRKWLDVEVAVCEARAERGEIPPQAMQDIREKAAFNVCRIDAIEKETQHDVIAFLTNVAEHVGPASRFIHEGLTSSDVLDTANALLFVEAADLLLQDVDQLLAVLKRRAFEFKDTVTIGRSHGVHAEPMTFGMKFALWYAEMRRNRERLERARETMRVGKISGAVGTYANIDPDIEARVCRRLGLQPAPISTQVIQRDRYAEFFATLALIGCSIEKIAVEIRHLQRTEVREAEEYFAPGQKGSSAMPHKRNPIACENLSGLARILRTNALAAMENVTLWHERDISHSSVERVIGPDSTILCDTMLVRLTRVLDRLLVYPDRMRRNLELTGGLFYSQRVLLALTGKGLSREEAYRLVQRNAMKVWHEGGNLKERLQEDQEVMRCLSPEELAPLFDLGYHLKHVDTIFRKVFRDNP
>NZ_CP040098.1|WP_137424531.1|2112833_2113262_+|hotdog-fold-thioesterase
MDETLKQALVDRVAREPFARKLGLRLVDLRAGYSRVEMDFTSDLENIFGMAHGGAVFALMDEAFETAVNSHGTVAVALSMTVNYTAAAEPGSRLTAEAREMNRSRRTALYDIRVTDENGRLIATCQALAYRKGVPLPFIHGD
>NZ_CP040098.1|WP_137425790.1|2112116_2112767_+|LysE-family-transporter
MEYLAIFGGSFMLALSGALMPGPLFTVTLSESARTGFRAGPLLITGHSILELALVAAILLGLGPYLKLPTVTGVVALLGGTLLVYLGWDMLRSAGRLSLRWDPAADKRSGARHPVVMGALASLANPYWTLWWATIGLGYLIAAMKYGAPGVTLFFVGHIAADFAWYSLVSFGVSRGKTLLGDSGYRWTLRACGAVLIFFGGWFLISARDFLGSLAT
>NZ_CP040098.1|WP_137424530.1|2111044_2111806_-|creatininase-family-protein
MHVLEDITMVRFETERQSVRTIIIPCGSLEEHGPHLPLGTDTFHAVALAREASRKASVWVAPPLWYGVCRSSSEHPGTVGIRSRTLHRLLKDVIRGFYAQGIRRFVVLSGHAGGTHMATLLDAAEESMAELPESAFAVLSVLDLGKEAWRGVQATPGDSHAGEVETSLMLHLHPDRVQGSAPEEYPSFPPHLLVRNKRAFWAHGVWGNPALASAEKGRTLMERSTDALVELIRRLEAWREPSGNGADGGDPLV
>NZ_CP040098.1|WP_170180280.1|2108937_2111052_-|U32-family-peptidase
MSESRRKTPELLAPAGNLESFFAALESGADAVYLGLKELNARALAPNFTLDDLARIIPYAHARDAAVHVALNSLVTALEFPRILDLLQSLADLAPDAVIVQDPGIFQLARDRFPTLTLHASTLMGAHNAAGVNALARLGASRIVLARELSFDEIRDITRTTTAEIEIFVHGALCFSFSGLCLASSFRGGHSGLQGRCVQPCRLKFRQGKREGYFLSCNDFSALDWIPRLKALRIAAFKIEGRMKSADYIAQVVRAYRDVMDAPPDRHSEAIAHARERLGLAPARKLTQGHLEGENASGILTPHRSGSSGLWVGNVLTVEEKRVLVDLRHGIRKGDRLRTESPDGREQKPFAVQALLSLETSAPREEAGPGEKIFLKAARDLQPGERLFRIGGQLEDPVRWRRVLLDAVPKPRPYRKTFPAPDSVSDSWPTVPARHSHFAETLLVKVGRYEELGNAMASPAHGVLLTASKPNLERLAKARLHPAQKKRFAWSLPPVILPKDLDYYQRAVRWFVDRGYRNWELNNWGHFDFFRETERLVLAAGHRFNVRNPAALAALGAQGCARTVLSLEITGREIQRLLRSPLGSVPVVTVYAWPALFTSRLKPALLAGKPFVTPRNEPYLLLSESGITAVYADRPVSWLARLAPLRSWGVRCFLIDLSEGPRRNPKDLERVLSGFKRGRADEPFSEFNWDREPVKHRASLKDRR
>NZ_CP040098.1|WP_137424528.1|2105202_2108697_-|DNA-polymerase-III-subunit-alpha
MAQPSFVHLHVHSEYSLLDGAIRLADLLDTARSYGMPAVAVTDHGGMFGALEFYEKAKKAGINPIVGCEVYVAPKSRFDRQAAPGPNGDEDRNHHLVLLAENDAGYRNLMKLVTLAHLEGFYYKPRVDKELLRAHNQGLIALSGCLKGEVASNLLQGRKATAVKAAEEYAAIFGPDRYYLELQANGIPEQATVNEGLIQLARDLGLPLVATNDCHYLRRSDARAHELLLCIQTGKTILDQKRMKFSTDQLYFKSPEEMAREFAHVPEALENTVRIADRCRLEIPLGEYHFPVFPLEEGESIEDRFEKEVLEGFERRLKQIQKRRPHFGSREREEYDKRLRYEIDVIREMGFAAYFLIVADFIGYAKKQGIPVGPGRGSAAGSLVAYVMEITDLDPIEHGLIFERFLNKERISMPDIDVDFCIHGRDDVHRYVSEKYGSDRVAHITTFGTMQARAVIRDVGRAMGMAYGDVDRIAKLIPASPGMTLKKAFELEPRLAEIQRDDPQVRELFEVAFALEGLPRHVSTHAAGVVIGDRPIVEYMPLYRDQDGEIVTQYSMKYVEKAGLIKFDFLGLRNLTVIHNAVKLIEKNHGIQLNMEELPLDDSETYALLSRADTTGVFQLESSGMRDIMVRLHPENFADIVALVALYRPGPLESGMVEQYIDGKHGKIDITYELEALRPILESTYGVILYQEQVMKIASVLANYTLGEADILRRAMGKKIPEVMEAQRQRFLDGAKANGIDLAKANHIFDLMAKFAGYGFNKSHSAAYALIAYQTAYLKAHYPVEFMAALLNSVLSNTDQVVKLMNECHDKGIEVLPPDVNLSDRDFTVVEGKIRFGLAAVKNVGESAIESILRSRNNEGAFRSIYDFCERVDTQRVNRRVIEQLIKCGAFDSIHNSRASTFAALDTALERAQVVQRDRQSGQLNMFELLRNRKRAASPPLPDVPAWDSRTTLQYEKESIGFYVSGHPLDHYADQLATLCSADSQRVREKPEGTQAILCGLISVTKELTTKRGERMAFLTLEDKLGTLEVVAFPEVFSQSRELLEQDEPKVVIGTVQHDEKGSKVIAERILTLEDAQVEAVESVRIHLKAEQLNRDTIERLRHLLISHAGECETFLHVDVEREAEAVIALNAKLRVNPTASFFLEMGRHFGEGTAEPVLRMCRQ
>NZ_CP040098.1|WP_137424526.1|2104844_2105186_-|hypothetical-protein
MIENYQFGSMTVRGRTYRSDLMIVQGRVIPDWRRRESHEVDVSDVTEILQAKPHTLVVGQGHPGRMQVLPSLRKRLEEAAIELIEEPTDRAVLTFNRLFSEGRDVAGAFHLTC
>NZ_CP040098.1|WP_137424541.1|2118589_2119870_+|phosphopyruvate-hydratase
MSEIMTVKAREILDSRGNPTVETEVVLESGATGRAAVPSGASTGSREALELRDGDAKRYLGKGVLTAVRHVNEEIGLKVIGLDAQDQVELDRFMIALDGTENKSRLGANAILSVSMAAAKAAAEETGLSLYRYLGGVSAYVLPVPMMNVLNGGAHADNNLDIQEFMIVPAGAPSFKGALRMGAEVFHHLKKILKARGLNTAVGDEGGFAPNLASNEEAMELLMDAIQAAGYVPGEDVFIALDAAASEFYENGAYRLAAEKTPEKSAEELVAFYRSWCERYPVISLEDGMAEGDWAGWKRLTKELGSKVQIVGDDVFVTNTRILARGIDEGVANAVLIKLNQIGTVTETLEAVSMAYRAGYRAVISHRSGETEDTFIADLAVGARTGQIKTGSLSRTDRVAKYNQLLRIEEELGDSARFAGIEAFRR
>NZ_CP040098.1|WP_137424543.1|2119895_2120594_+|dephospho-CoA-kinase
MGVEANPSKDRSAGKPQGKPAAARRIALTGGIASGKSTVSDLFRQKGAVVLDADRAAREAVRPGTRSWRRLRELLRPDFFLEDGELNRRRLRLRIIDDPSLRAEVNAVLHPAVMEIIKEGWREACSHNREAFVLFDIPLLYEAGLDGRFDRVILVYAPPEVQVRRLMERDGVSREEAERTLAMQMPIDRKRARAHLMIDNGGSLEATRRQVDAVWRVLAREVAGSPKELVRE
>NZ_CP040098.1|WP_137425791.1|2120747_2122475_+|succinate-dehydrogenase-flavoprotein-subunit
MPVHKHDVVIVGSGLAGLRTAVEAVGSADVALISKVFPTRSHSGAAQGGIAAAIGNEEPDSWEWHMFDTVKGGDYLTDQDAAEVLARDGPRAVYELEHMGVPFNRTPEGRIAQRAFGGHTRDYGKAAVKRACYAADRTGRVILDTLYGQAVRKGIRVYAELSIVDLIFRDGRAAGLVAYDLATGELHLFHCRLLLLATGGFGKVYKTTSNCFANTGDGVYLAYRAGLPLEDMEFVQFHPTGIHGLGVLISEAARGEGGILRNRDGERFMERYAPTIKDLAARDVVSRAIMQEIQEGRGIDGQDIVHLDLTHLGKDRLAERLSDISSFVRIYLGIDPASEPIPVHPTCHYMMGGIPTDVDGRVLGKDLQPVTGLFAAGECACVSVHGANRLGCNSLLDLVVFGRRAGKKMLAQLPNVPWPQLPRDAGDAVRERIERLKGRSSGERVHGLRRELQQVMMERCAVFRREADLRQALEDIRALQARCRDGLYLNYRGERFNTDLLEALELESLLGLAETIVLSALKRTESRGAHWREDFPDRDDQRWLKHTLVALEDGEPAIFYRPVTVTRFEPKPRVY
>NZ_CP040098.1|WP_137424544.1|2122476_2123178_+|succinate-dehydrogenase-iron-sulfur-subunit
MELRFKIYRFDPRMDSEPRYQDYVVQADPRERILDCLNRIKWEQDGSLSYRMSCGHGVCGSDAMRINGRCALACQKLVKDVADSEVLLEPLPTFTVLKDLVVDLDPFFERVNQMRPYLLAALEEPNRERLQTPEARKKLDHVIRCILCACCTASCPIVQEGTPFIGPAALVWAFRNIFDSRDARHEERLKAVDTPDGAWGCRNHFECTRVCPKEIPVTKSINIIKREIEKALR
>NZ_CP040098.1|WP_137424546.1|2123331_2123610_+|hypothetical-protein
MFEQKEVEAKIHELYPDIQRYGIFLKVKKDRLIGAQNYLLTLEKDNRTASFKLDLDDVKQCMAGNRCSLITLELEKFIRQFIDESYSISEAG
>NZ_CP040098.1|WP_137424548.1|2123642_2124575_+|acyltransferase
MLHFLPAPVNGALSLILLSFNTVACCLPLFLVAFLKLAVPFRPWRKCCDVVLNGIAEGWILGNNLSLKLTKKIHWDVKGLEGLKRNGWYLVLANHQTWTDIVVLQKIFWRKIPFLKFFLKKELIYVPFLGLAWWALDFPFMERSPRGMASRRSRARGGDLAATVKACEKFKTIPISVMNFVEGTRFTPEKRDGQRSPFRHLLRPKAAGIAIVLASMGEQLHRILDVTIVYPEGVKSFWAFLCGRVTRVKVRVRALPITSELLGDYFEDREFRARFHDWLNRLWEEKDGRIAALLAGAEAGCDPVALEGAA
>NZ_CP040098.1|WP_137424550.1|2125408_2126173_-|ABC-transporter-substrate-binding-protein
MRILSLAPTQTEILAALGAFDDLVGVSDNCDFPEAVKTLERFGPWAAPDLHRVRSARPDLVCTFGRHQQEVADLLRSHGITVYHSDPATITEALETFRDLAALTHRAAQGERLLGSLEGRLQAVHERAERIRRSKRPRVLRIMHWEPLITVGPGAFQHDVIETAGAENIAADGAAPYFACDPAELARRDPDLIFFCDPALLDRLPADPVWKTTRAVREGRLRVFDCGLTCRSGPRIVDMTEALQKAFLNPPPTP
>NZ_CP040098.1|WP_137425792.1|2126291_2127506_-|DEAD/DEAH-box-helicase
MNFDCFDLDSRILNNLRSIGYSTPTPIQEQAIPSILQGLDVIGLAQTGTGKTAAFALPIVQRLTQGPRNRIRALIVAPTRELTEQTQKAIHQLARNTHIRSTTIYGGVGINAQIQALRGGVEIVSCCPGRLLDHVQRGTIDLSQVEVLVLDEADRMFDMGFLTDIRKIVALLPRSRQTLLFSATMPAAIRSLVEDILRNPSTIQAGKSAPVESVAHTFYPVAAQSKAALLKQILEQTSTGPVIVFTRTKHRSKTLARQLEHSGYRAAALNGNLTQAKRQQALDGFHQGRYEILVATDIAARGIDVSKVSHVINYDMPDTVDAYTHRIGRTGRAQQTGEAFTFVCAEDGFLELAIKKMLGTKLKYCVIKEFCGAGEAPRRANPPTPLAEKWRHGPQQHQSAGRRH
>NZ_CP040098.1|WP_137424552.1|2128162_2129236_+|NADH:flavin-oxidoreductase/NADH-oxidase
MAKSVLFSPLRIKDVEFRNRIFVSPMCQYSSEDGLPTDWHLVHLGSRAVGGAALVLVEATAVSPEGRISPWDSGIWSGRHALALQKITAFLKAQGAVPGIQIAHAGRKASTDAPWRGGRPLGTDSGGWQPMAPSPVPFDEVSPVPRAMSREEIERVEDQFADAARYSLEAGFEVLEIHMAHGYLAHEFLSPLSNRRTDLYGGDLENRMRFPLEVAKKVREIWPENLPLFVRISCTDWMEGGWDLVQSVELCRRLKELAVDLIDCSSGGLVPRARIPVGPGFQVPFAEAVRREVGIAVGAVGLITSPVQAEQIVANGQADAVLLARELLRNPYWPLEAARALGVDLPWPPQYRLAKPA
>NZ_CP040098.1|WP_137424553.1|2129905_2131096_+|putative-DNA-binding-domain-containing-protein
MTWLTDDELLNRLYELESPLVERKRSGADRSGIRRNICAFANDLSGSGQVGVIFLGVEDDGQCAGIAIDDQLLRTLAQMRSDGNIQPIPSMQVERRVLDGCPVAVIQVEPANDPPVRYQGRVWVKVGPTVQVATAEEERRLIERRRAGDLPFDLRPAGSADLEALDLGYIRRIYLPAVISPDVLEWNDRPLEQQLRSLRLVHGDHPTWGGLIGCGIDPQAWVPGSYVQFLRIDGLSLTDPIKHQKELTGKLEDVLRRLDELFEINISVRTRFVDVPREARQPDYPLVALQQLGRNAVMHRTYEGTNAPVRVYWYSDRVEIQNPGGLYGQVTQENIGTGVTDYRNPLIAEMMHHLGFAQRFGMGLPIAQKALKDNGNPPPEFHFSSTHVAVTVRSAI

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Crispr_ID: NZ_CP040098_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_20

2287499-2287610

Orphan

Consensus_repeat	Method
ATCGCGGCGAGGGCGCCGCTCCTACAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_20

>merge|NZ_CP040098|20|2287499-2287610|CRISPRCasFinder
ATCGCGGCGAGGGCGCCGCTCCTACAGGAACAAGGAACCTCAGGGCCCGACTTTCATGAGATTGTTTCTTGCCGGCGATCCCCATCGCGACGAGGGCGCCGCTCCTACAGGA

>NZ_CP040098|20|20|2287499-2287610|CRISPRCasFinder
ATCGCGGCGAGGGCGCCGCTCCTACAGGA	ACAAGGAACCTCAGGGCCCGACTTTCATGAGATTGTTTCTTGCCGGCGATCCCC
ATCGCGACGAGGGCGCCGCTCCTACAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137424792.1\|2298308_2298626_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380377
NZ_CP040098.1\|WP_137424766.1\|2273555_2274485_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP040098.1\|WP_137424784.1\|2289720_2292498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224309
NZ_CP040098.1\|WP_137425797.1\|2277869_2279423_+\|DUF4301-family-protein	unknown	unknown	gnl\|CDD\|372920
NZ_CP040098.1\|WP_137424770.1\|2276773_2277586_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NZ_CP040098.1\|WP_137424768.1\|2274540_2276097_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|235711
NZ_CP040098.1\|WP_137424788.1\|2294179_2295814_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|239202
NZ_CP040098.1\|WP_137424778.1\|2283123_2285733_+\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|235342
NZ_CP040098.1\|WP_137425798.1\|2303967_2305185_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP040098.1\|WP_137424772.1\|2279469_2280996_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226132
NZ_CP040098.1\|WP_170180297.1\|2299030_2301301_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|224369
NZ_CP040098.1\|WP_137424774.1\|2281131_2282781_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP040098.1\|WP_137424786.1\|2293082_2294216_+\|glutamate-synthase	unknown	unknown	gnl\|CDD\|238888
NZ_CP040098.1\|WP_137424765.1\|2273305_2273539_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|274226
NZ_CP040098.1\|WP_170180298.1\|2301297_2302596_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP040098.1\|WP_137424780.1\|2286051_2287464_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NZ_CP040098.1\|WP_137424790.1\|2295863_2298221_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|237198
NZ_CP040098.1\|WP_137424782.1\|2288229_2289468_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP040098.1\|WP_137424798.1\|2302777_2303386_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NZ_CP040098.1\|WP_137424776.1\|2282777_2283116_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137424792.1\|2298308_2298626_-\|cupin-domain-containing-protein	gnl\|CDD\|380377	cd06122, cupin_TTHA0104, Thermus thermophilus TTHA0104 and related proteins, cupin domain. This family contains bacterial proteins including TTHA0104 (also called TT1209), a putative antibiotic synthesis protein from Thermus thermophilus. TTHA0104 is a cupin-like protein. The cupins are a functionally diverse superfamily originally discovered based on the highly conserved motif found in germin and germin-like proteins. This conserved motif forms a beta-barrel fold found in all of the cupins, giving rise to the name cupin (cupa is the Latin term for small barrel).	1.34136e-11
NZ_CP040098.1\|WP_137424766.1\|2273555_2274485_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	4.02399e-164
NZ_CP040098.1\|WP_137424784.1\|2289720_2292498_+\|hypothetical-protein	gnl\|CDD\|224309	COG1391, GlnE, Glutamine synthetase adenylyltransferase [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms].	7.72493e-159
NZ_CP040098.1\|WP_137425797.1\|2277869_2279423_+\|DUF4301-family-protein	gnl\|CDD\|372920	pfam14134, DUF4301, Domain of unknown function (DUF4301). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 505 and 516 amino acids in length.	0
NZ_CP040098.1\|WP_137424770.1\|2276773_2277586_-\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	2.15182e-87
NZ_CP040098.1\|WP_137424768.1\|2274540_2276097_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|235711	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase.	4.24601e-131
NZ_CP040098.1\|WP_137424788.1\|2294179_2295814_+\|4Fe-4S-binding-protein	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	5.23352e-65
NZ_CP040098.1\|WP_137424778.1\|2283123_2285733_+\|[protein-PII]-uridylyltransferase	gnl\|CDD\|235342	PRK05092, PRK05092, PII uridylyl-transferase; Provisional.	0
NZ_CP040098.1\|WP_137425798.1\|2303967_2305185_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	0
NZ_CP040098.1\|WP_137424772.1\|2279469_2280996_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226132	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].	1.19774e-164
NZ_CP040098.1\|WP_170180297.1\|2299030_2301301_-\|LPS-assembly-protein-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	5.3829e-68
NZ_CP040098.1\|WP_137424774.1\|2281131_2282781_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP040098.1\|WP_137424786.1\|2293082_2294216_+\|glutamate-synthase	gnl\|CDD\|238888	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	1.13442e-77
NZ_CP040098.1\|WP_137424765.1\|2273305_2273539_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|274226	TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (SP:Q50229, ). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors. [Regulatory functions, DNA interactions].	6.99512e-09
NZ_CP040098.1\|WP_170180298.1\|2301297_2302596_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	3.51916e-157
NZ_CP040098.1\|WP_137424780.1\|2286051_2287464_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NZ_CP040098.1\|WP_137424790.1\|2295863_2298221_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|237198	PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional.	1.60229e-95
NZ_CP040098.1\|WP_137424782.1\|2288229_2289468_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.07168e-81
NZ_CP040098.1\|WP_137424798.1\|2302777_2303386_-\|cupin-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.50231e-33
NZ_CP040098.1\|WP_137424776.1\|2282777_2283116_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	3.18677e-57

>NZ_CP040098.1|WP_137424780.1|2286051_2287464_+|type-I-glutamate--ammonia-ligase
MTPKEVMEYAKANGAKMVDFRFLDFPGIWQHFSVPISEFDESSFEEGFGFDGSSIRGWQPINASDMLVVPDPGTAVMDPFMQVPTLTVICNVVDPITKEKYTRDPRHIAQKAEAYLNFTGIGDTAYFGPEAEFFIFDDIRYDTASHFSYYHLDSVEGIWNSGRAENPNLGYKPRYKEGYFPVPPSDSLQDLRSEMVMIMQQVGLQIECQHHEVATAGQAEIDMRFAPLVKMGDQLMWFKYIIKNVARRHCKTVTFMPKPLFGDNGSGMHTHVSLWKEGKPLFAGDRYAGLSEMALHAVAGVLKHAAALCAFTNPTTNSYKRLVPGYEAPVNLAYSSRNRSASIRIPMYSPSPKAKRIEVRFPDPSCNGYIAFSALLMAVLDGIEKRMDPGEPLDKDIYALSPEELADVPSTPGSLDEAMKALENDNEFLLKGDVFTEDVIETWIKYKREREVDPVRLRPHPYEFMLYYDI
>NZ_CP040098.1|WP_137424778.1|2283123_2285733_+|[protein-PII]-uridylyltransferase
MNERTEREGFFALHRKLKEQRQAFSRFCAGDVPGVLAARTYAQTFLQVLQNGVRPMVSDERGWAFVAVGGFGRGELSFASDIDLLFLYHRRLPSFLEDLIRDLVYGLWDAEFEVGHVVTSVSGLRGLMREDFSAETTYLETRFIAGDPGFYADWRRALLKDYGRQRRRRFLDSLLRYCRGRLAQYGESSYLLEPHLKEGIGGLRDLHVARWAAMVFLGDGAFESMVQERWLSPEERHWLEQAQDFLWRVRLQLHGLVGRRQDQLLLGDQEPIALRLGFVDGTEGSAVEAFMRLYYRHTARIRRVTAFLMEKLQSEYGGGRKRKRRDRILPGPFLLEGEHLRFLEPEMIAKRPGILMQFFWQAAQSRAHFHHETGQLIRENLRHFTPEWREHPEVVAQFFEILTHPEMAFPVLKVMMETGFLEVFLPEFAHVRYRVQHDVYHLYTVDEHLLRTVRELHRLNTHEDEGPLKPALAALFADLKHPRVLYLAALIHDIGKGLGKNHAERGAEMAREMAGRFHLSGEESDLLVYLVRRHLLLAETALKRDLSDEKPVVRCAAEVEDRERLRMLYILTIADSKATGPGAWNTWRASLLRELYLKVDRILRRGELRMEDVRVRVAEIQRAVLALIADATERSRVSRWLDALSFRYLLSQPADAVVRHYRMEQELRKTPLVLDARPLEGEMWEVSVACQDRPGLFALITGVLWVHGLNVLAADIFTRRWGVALDVLRVESLPDPLHTEEIWEKIRGDLAAALADQKHMERLAARESRPSLIRKRCVPTKKDRVVIDEDASDFYTVIEVYTWDRPGVLHAITRTLYEMDLSIQIAKIATPGAQVVDVFYVTDLEGNKILDTSIHDTVKHRLLEVLARC
>NZ_CP040098.1|WP_137424776.1|2282777_2283116_+|P-II-family-nitrogen-regulator
MKKIEAIVKPFKLDDVKDRLTEIGIKGMTVTEVRGFGRQKGHTEIYRGAEYVVDFLPKIKVEIVVSDDRVAEVVEAICEAARTGKIGDGKVFVTPVEECIRIRTGEWGEGAL
>NZ_CP040098.1|WP_137424774.1|2281131_2282781_+|NAD+-synthase
MKIGMAQIDPTVGDFEGNSEKICRFAERARREACDLVVFPEMAVTGYPPRDLLEKSGFVARSRRYWDRLARASEGIGMICGAVTENRDGPGKPLYNAALFFEDGRLIAEARKRLLPSYDVFDEERYFEPGREPCWVDFRGKRLGITVCEDIWTEEPFLPRALYRVNPVMDLAAASIDLLVNVSASPFHVGKAEWVGGLLRSHAARVGVPVVYVNQVGGNDELIFQGRSVVWDPGGRRLACGADFREDLVTWDSETGNGDDHAGSLDAPEEVIEALALGLRDYAAKCGFSRAVLGLSGGIDSAVTACLAKLALGAENVLGVGMPGPYNAPESLEDAGEVARRLGMDFRVVPIHRPFEAFAEVLAPVFQGTAPDVTEENLQARLRGVILMALSNKFNRLLLNTGNKSELAVGYCTLYGDMNGGLSVLGDVPKTMVYRVAERINGRYGWIPDRTVRRPPSAELRPGQKDEDSLPPYDVLDPILAAYVEERLSAEEIASRGWDLETVRWVVHRVDGNEYKRWQAPPVLRVTSKAFGIGRRLPIAHGYREGRTA
>NZ_CP040098.1|WP_137424772.1|2279469_2280996_+|sigma-54-interacting-transcriptional-regulator
MIEKYSHAELAALHEIARVLSRPDELKDQLQSVLDILSGRLGMERGMISILDLKTGEAWLDVARGVDVEVGKISYRPGEGITGKVAQTGRPMAIADLGKEAHFLDRTGARKALNRRELTFLCVPIFYQGRVVGVLSADKLSRTVEDLDREIELLSAVAELAGKVVHFRAVEEENRRLRRILAEARRPKTSIIGRSKGIQEVLRLIDQVADTNTTVLIHGETGTGKELVARAIHENSRRSKGPLIRVNCAAMPDSLLESELFGHERGAFTGAVTRRRGRFEEAQAGTIFLDEVGELSPVAQAKLLRVLQEREFQPLGSSRTVKVDVRVVAATNKDLEAEVARGGFRSDLYYRLNVFPIFLPPLRERGPDILLLADFFVLKYAREFGKPVARISTPAIDLLMAYHWPGNVRELENCIERAVLLASGDAIEARQLPPTLQMKPAELQEGVRGKLDVLVSAFERDLITEALKDARGNQAQAARLLGSTKRIIQYKVKKYCIDPVRFRSRDRS
>NZ_CP040098.1|WP_137425797.1|2277869_2279423_+|DUF4301-family-protein
MFSEEDRRFMTSLGIDERRVLEQLTMFEKGARFARLDRPCTLGDGILQVPAERRPHYEVLHAEAASAGRFSWFVPASGAATRMFQALFKVFKESPPPSRDAMERRARQGDRDAAAFLEFVENAHRFAFYNDWKNAMARCGLDLESELAAGRYATALEFLLTERGLHYGYLPKALLKFHAYPDGARTAFEEHLVEAISIVKDGHGVCRQHFTVSPEHEALFRELARVAAASYGRKYGAVFEITFSHQSPGTQTLAVDRDNRPVRDAGGRLVFRPCGHGALLGNLNDLQADVVFIKNIDNVVPDHLKGATIAWKKVLAGVLLDIQQRAHGFVRALKSDRYAAVLEDAAAFVKETFLCEVPVGGTSREALRDGLLDRLDRPLRVCGMVKNVGAPGGGPFWVQGDDRRLSRQIVEKAQVDWSDESQRAAWEKASHFNPVDLVCAVRDAAGRPYDLMRYRDPQAVLITVKSMEGREVKALELPGLWNGSMAYWNTIFVEVPLETFNPVKTVNDLLRPEHQPG
>NZ_CP040098.1|WP_137424770.1|2276773_2277586_-|VacJ-family-lipoprotein
MAEALADKGKTLKRLCMTLVLSSVFLLSWHAPQASLQGFFSPARAWAQSGGDFSDEDFLDPFAEETEEGGIRDPLEPLNRAFFQFNDRLYFWVLKPTATVYGAFIPEGVRVALRRAFENILMPVRFVNNLLQGKVDRAGVEVARFALNSTLGAGGLFDPAAWEFGIKAHDEDLGQTLGVYGIGHGIYIHWPIFGPSSIRDTIGTVGDCFLDPVFYLTPGIAESIAVVSADRVNRASLRIGEYEDFKKSALDPYVAMRNAYFQYRSEQVKK
>NZ_CP040098.1|WP_137424768.1|2274540_2276097_+|uroporphyrinogen-III-C-methyltransferase
MATGKVYLVGAGPGDPGLFTLRGKEVLGEAEVVIYDYLANEELLAFASPEAEKIYVGKKGGDHTLSQEAINRLMVEKGRDQVVVRLKGGDPFVFGRGGEEAEELVAAGIPFEVVPGVTAATAVPAYAGIPLSHRDLTASVAFVTGHERADRDDSKIAWEKLAGAVGTLVFFMGVKNLPEIVRQLTAYGRPASTPVAVIRWGTMPEQRTVTGCLEDIVERVKAVGLKPPAIVVVGDVVKLREKLNWFESRPLFGRTVVVTRAREQASGFKRLLQDLGARCVEFPTIAIEPPESWAPLDRAVSRVESYDWVLFTSVNGVRCFMERLKAGGGDVRDLKGVRLGAIGPKTAEALEAFGLRLDLVPGEYRAEAILDVLQGEDLVGRRFLLPRAAAARDVLPETLKRRGAEVDVVPTYRTVLPAEKTGKIMKLLHEGEIHCITFTSSSTVGHFFSLLKPDDVRPLLKDVVLACIGPITADTLRTFGWEPTVTAEEYTIPGLVRAICDHFSRVREEPWRGGSGRR
>NZ_CP040098.1|WP_137424766.1|2273555_2274485_+|hydroxymethylbilane-synthase
MNRTLRIGTRGSLLALRQSEQVKAALSAMHPELRIELKIIKTTGDKILDVPLAKVGGKGLFVKEIEEALLARQVDLAVHSMKDVPAMLPEGLGIAAVPAREDPRDVLVSGKAGTLEELPHRAVIGTGSLRRGAQALALRPDLRVETLRGNLDTRLRKARDGSYDAVILAAAGLHRMGWKDRITAYLDPDVFIPAIGQGALGIEARADDREVWGLLRGLHDVSTASAVTAERAFLKELEGGCQVPIGGHAQVLGASVALTGLVVSLDGRTLCRETRQAPCEEAERLGRELARELLDRGARTILEEVYRGA
>NZ_CP040098.1|WP_137424765.1|2273305_2273539_+|zinc-ribbon-domain-containing-protein
MPIYEYTCRKCGATFECLVFGSRETVSCAECGSPEVSRIMSVCGFKSGGEKGAASSRMGSGASSCAGCTAGSCSSCH
>NZ_CP040098.1|WP_137424782.1|2288229_2289468_-|IS256-family-transposase
MRIEISVPEVVSIFKEIQQNPEQIFQMVRLDVKEIVGRYLSEMMNAELTHFLGREPYERKDPGEAEPGAANYRNGSYVRRFTLKGIGEVSTKVPRDRNGEYHTQVLPRSKQYESEIAHDLCLMFLGGVSTRTLAMMTERLVGRKISHTEISQANGELKEALEKWRNRDLSQEPVKYLFVDGVNFAMRMGDSIEKVPVLVVIGVTEQGCRFVLGLQAGDKESAPTWREFFKDLKRRGLDASRITLGVMDGLPGLEAVFKEEFPKAKIQRCQVHVARNVLAKVPQKFKQEVADGMRSIFYASCPDKAREFFKEFKERWEKHVPSAVKCLEKSLDACLTFFHFPEEEWISLRTTNIIERLNKEFRRRTRPMEIVAGEQSCYTLLAFIALKMELHWRSNPLGKVAKNLPFWKQLEG
>NZ_CP040098.1|WP_137424784.1|2289720_2292498_+|hypothetical-protein
MPIRLELQRIGKASNYLGTLLRSQPEYEDWLWNRKQIFRRYPLTELYEHLKGLIIEASGFEDLLRSYRRFKQLHFLRIGGRDLLGWADLVETTGQLSDLAHVTLQVGLETLVGHPRWWMPPERVDAWRESWDRLEFVVMGLGKLGGYELNYASDVDLLFLYTPKEKRRAIHPDAPSVLNPLCQHLSGLLADAVGGDRVFQVDLRLRPQGKDGELVPSLMAASQHYLLKGRAWERQVLLKARPVAGDRGLGTAFLQEVRPFVFRRFLDFQALDELQAMRDRILAEGLKAGPGAAFDVKLGVGGIREVEFLVQSFQLIYGGRHPELDEPNTLRCLTQLERLGLLPEDAVRELREAYTFLRRVEHWVQLDQNRQTQRLPKSPEGRERLAEALGFEGDFDRFFETLNAHCEVVHGHFTSLFRPSEDAGRGPEAFRETVEDSEGEAAARVREDVSRALKRLEPVLRRFPPTFRDVVAETIAALGERAREDVFQEMAARVERYLGQVRRRSGLAKIFEGAAPWVRTLVQALAVSEMVSNLLAHQPSLVEGVSACAGDCPDDDAWEVSSRKILKRCTTYEESVEWIRRLKNERLLMLALSDLGGRLDAERLEESLTRLADFVIVETFRAVREDVGEGDGLPLAILGLGKLGSREMGYLSDLDIMFVYEPKEGESPEQIPVPVVRLIQRFMRMISIPLQEGPGYAVDARLRPTGNYGPLVVTHKAWCAYYEQRADLWEIQALLRLRAVGGWRELGRALEAKARELCFQPRDPGEVWPRLCHLRQRMEGERAGEREGTVNLKLGYGGMADLEFLVQGFQLIHGWEDPALQASGVRRVLGRVAERLAETEGVTPGAGPLLMEAFSAYRALEQRLQLFDNLSTQRLTSEQFTLLKELGLWPPPGGSRLESWEDLQRLRRRVREIWDGVCAVSRPAS
>NZ_CP040098.1|WP_137424786.1|2293082_2294216_+|glutamate-synthase
MCRLFAVTSQEPQSPMMAIQALDVMREGHDGSGVGLFLSDLGGPFEEFKGAPVLSGIFSNAGLKRLDQFMMNIGFMTKYKLSIKVPKGAPPSGAPRRDIYLIRAYEYPEEWESLSEADIRHRLLMIRLQLRQMGEEEGDMIVFSFWPDVVMIKEIGDPMSVAEYLQLDRRELYARIIMAQGRQNTNYAINLYACHPFFIQGVASMTNGENTAFIPIREFLESRGFPGYMGYQSDSEVFTHILHYTIYRLGLGIEAYKHIITPLQDPDLEKHPNGAFLKQVKHSCRRLIIDGPNCVIGCLPDKSVFMVQDRKKLRPGVVGGKPGLYAFSSEICGLDAAIPDRDKSKDFQPMHLDTAVIGPQRREVTLWSQTDSLPLLH
>NZ_CP040098.1|WP_137424788.1|2294179_2295814_+|4Fe-4S-binding-protein
MVTNGFIAPSSLSVKDLPWQVHWSRDRCTLCGRCTAVCPVHAIELAVFRKRAVQPVLGLKEPPSSLFQVFYGIRQKTDPAYACIGCAMCTMVCPNEAIIPVRSDEADKLRYHVNRGGQPRRRGGRRNMPDGVLDRIKFTRISMLTDPALDAGRHEFELRTLLGRILPPEDSLQLLKDEGWIPPVREIYPLIIGGMSFGALSPNMWEGLQMGVAYLNEELGMPVRMCTGEGGCPPRLLRSRFLKYVILQIASGYFGWDEIIHALPEMKEDPCAVEIKYGQGAKPGDGGLLMWYKVNQLIAAIRGVPSGVSLPSPPTHQTMYSIEEAVAKMIQSMSMAWGFRVPVYPKISGTSTALAVLNNLTRNPYAAGLAIDGEDGGTGAAYNVSLDHMGHPIASNLRDCYLNLVKLGKQNELPLFAGGGIGKRGNLAANAAALIMLGASGVQIGKYIMQAAAGCVGSESDRCNVCNIGICPKGITSQDPRLYRRLDPELVAERVVDVFLAFDTEFKKIVAPLGRSTSLPIGMSDALGVDDRNIAERLQIRYVV
>NZ_CP040098.1|WP_137424790.1|2295863_2298221_+|FAD-dependent-oxidoreductase
MTNSGGSTEQAFQKSYWVAGKENGRRLDSRILEERIQQAVAEGHRALEVEAFGQHGIGGRLWRAGDEPVKVVVHGSPGQRLGSMGFPNTQIEALGPASDDVGWLNAGAEIVVHGNAGNGVANAMAQGKVFIAGNIGARGMTMTKHNPRFDPPELWVLGSAGDYFAEFMAGGIAVICGYNPQNAENVLGYRPCVGMVGGKIFFRGPHGGYSRTDAKSIPLSDDDWHWLAKNLQVFLERIGRSELFPQFADRAVWQLLKARMPSEKRAGPRRAMGDFRKDIWDGELGRGGLIGDLTDLDRSPVPVITTGALRRFVPVWENRKYAAPCEAACPTGIPVHERWRLIREGRVDEAVDLALAYTPFPATICGYLCPNLCMQSCTRRSFNMAPVDVTQLGRASLKASLPELPPLSGRRVAVVGGGPAGLSVAWQLRRAGHEAVVYDRESTLGGKISSVIPKTRIPEGVAEAELERIRKVLPHVHLQQDVTREDLEQLKADFDFVVIATGAQKPRLLPVPGKERLIPAGDFLKESKAGKAKVGTRVVVIGAGNVGCDVATEAHRLGAEEITLIDIQEPASFGRERKGAEAAGAHFLWPVFTKAVTSKGVELTSGETIPADTVIVAIGDAPDLEFLPETVETDRGFIVVDENGRTSDPKIFAVGDVVRLGLLTDAVGAGRRAALAIDDLLSGRRPTRESRKIIDVSRVKLEYFDPRNLRFEGLEQCAGECASCGSCRDCGICIAICPNAAISKKENGSGDFEMVVDDDRCIGCGFCAGACPCGIWDLVENEPLG
>NZ_CP040098.1|WP_137424792.1|2298308_2298626_-|cupin-domain-containing-protein
MKKVNLFEANDFDPKALKRLLVHDSPYFKILNFNFKPGQELPVHAHDIEGQVSLTVIEGKGLFLGKDGATLPAAAGDVLVCDIAEPHGLRAETDLRLLVTIAPPI
>NZ_CP040098.1|WP_170180297.1|2299030_2301301_-|LPS-assembly-protein-LptD
MRRHRSTARTKQGSIAAALGWLLIAALAGTCAGAEASFLDIGEQQDVVASDREPWTIQADTLSYDAKAKAYLAEGNVFISSGDRSIKADWARLDSVEQRAELAGNVTLRFGRDWLQGEHVIWNLDTETGWVDGGTVYFSESGFYVRGKNITKTGPSQYELQEGIITSCNPDDPDWTIRTRDLRVKVGGRGVAKHSSFWAGPIPLFYTPFAVFPVNRERQSGFLFPTLGSSSLNGFGVEVPYYWAIRQDMDATFTAHYMEERGIMAGMEYRIRHPKWGQGIWMVHYLDDQADKSHLRDEGYPFEQSDRYWVRGSHTFALPHEIEGFLSLDVVSDRNFLKEFERGSVGFDETNDVLRRFSGREILNDKSVLSRESSLYLVRRNDNQLMSFDTRYWDNLDRSKDERTLQQLPRIAYDITPTHPMLSPFYYSLESAGVHYWRPEGDKGTRFDMLPRIYYPVHLWPYLVLEPSMGIRTTLYSVDWDDSDHSPTKARVLPDVVLELSSRMERVYAFNRWNITAVQHVVRPEFQYEWIPDEDQDDLPEFDRIDRIGNRHALRYGFSTFLISKRMIRDANNEPAAHYLELGRLRVTQAFKLDRSSDDDLLQTEAGKRFSNVDFELDLTPGSWLNLSYDVSVSPYDYSTTRHDLALGLRDSRNNALNLSYRYREDMDLDEIISGVHLAIRPNLFIYTYHDYSFDQKEMFEESYGVYYQHGCWGIRMGYKEEDEDREFMLAFTLLGLGQVGTGYVSGFGFSPAGNP
>NZ_CP040098.1|WP_170180298.1|2301297_2302596_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MDDYQQAVDYLLSLQKFGIKFGLNRTENVLARLGDPQNQYRCIHVAGTNGKGSTAAVLASILRRHGHRVGLYTSPHLVRFTERFQVDGKEVEPEKIFSAFEDIRRVLDPREPPTFFEAVTAMAFHYFAQEHVEWAVVETGMGGRLDATNTIRPEAAVITNVSFDHQEYLGRTLSAIAREKAGIIKPGVPVVTAARQPVVQSVIKATCLRNDSPLYRLGTHFRVRRNGNGSFGYYGLRFHWSHIKTPLKGDHQFVNAGLALAALEVIERSGALILNPVAVEEGLSQVRWPARMETLEERPLVILDGAHNPPGAECLRSALLHNFTYDKLHLVLGIMGDKDIRGIFRRLLPLAETAIFTKPRYGRAADPELLRRLARPYIQKMYAVPDPAAAIGQAKALAGPDDLICITGSLYFAGEVKEIYGEPQAFPGCVFG
>NZ_CP040098.1|WP_137424798.1|2302777_2303386_-|cupin-domain-containing-protein
MGDKNDIQLAVKALQIGHKVRELRQKHRYTLQDLAHKTGLSKPFLSQIENNHVVPPIATLLKLARALNVGLAHFFQDQEENEKISITRPSDRMRMDRRPHQDKEQVNYIYESLERRKSSKRMEPFLVEFPVQEVERMEFQSHTGEEFLYLLEGKVEFRTGDRVEILEAGDSIYFDSDISHSFRCLSDQPAKAVAVLFSELSA
>NZ_CP040098.1|WP_137425798.1|2303967_2305185_+|ammonium-transporter
MDSGDTAFMLVASALVMLMTPGLALFYGGLVRSKNVLGTMLQSFICLGVVSILWVLGGYSLAFGPDVGLFIGNLDWFALNAVGTAPGPYSDSIPHLVFCAFQLMFAILTPALITGAFAERLKFSAFMAFTILWSLLVYAPVCHWVWGGGWLAKLGALDFAGGTVIHINSGVAALAAALVVGKRKGYQREPFPPHNLPMTVLGAGLLWFGWFGFNAGSALSAGEIAALAFLNTQVATGAGAVSWILAEWVRLGKPTTLGAATGVLAGLVAITPAAGFVGPVSAVVIGLVAGVVCYGAVIAKERLGYDDSLDVVGVHGVGGLWGALATGLFASTAANPDGVNGLFFGNAHQFFIQAVGAAAALVYSFVLSWVLFKLIDAVIGLRVPLEDEVQGLDLTQHSETGYTWT

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Crispr_ID: NZ_CP040098_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_21

2465342-2465452

Orphan

Consensus_repeat	Method
GGAGGGGAAATAGAATTCCACCTTGTTCCCAAGCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_21

>merge|NZ_CP040098|21|2465342-2465452|CRISPRCasFinder
GGAGGGGAAATAGAATTCCACCTTGTTCCCAAGCCGGTTTCGGTTCAGTCGCCATGCGCTTGCCGGCTTCAATCGGAGGGGAAATAGAATTCCACCTTGTTCCCAAGCCGG

>NZ_CP040098|21|21|2465342-2465452|CRISPRCasFinder
GGAGGGGAAATAGAATTCCACCTTGTTCCCAAGCCGG	TTTCGGTTCAGTCGCCATGCGCTTGCCGGCTTCAATC
GGAGGGGAAATAGAATTCCACCTTGTTCCCAAGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137424950.1\|2460537_2460759_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223515
NZ_CP040098.1\|WP_170180313.1\|2468041_2468608_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377796
NZ_CP040098.1\|WP_170180310.1\|2458078_2459374_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NZ_CP040098.1\|WP_137424957.1\|2468604_2469456_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040098.1\|WP_137424949.1\|2459378_2460422_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP040098.1\|WP_137424953.1\|2465775_2466177_+\|flagellar-protein-FlaG	unknown	unknown	gnl\|CDD\|377090
NZ_CP040098.1\|WP_137424962.1\|2472836_2473259_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP040098.1\|WP_137424946.1\|2456516_2457587_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP040098.1\|WP_137424947.1\|2457586_2457829_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225136
NZ_CP040098.1\|WP_137424955.1\|2466459_2468049_+\|response-regulator	unknown	unknown	gnl\|CDD\|225116
NZ_CP040098.1\|WP_170180314.1\|2471426_2472293_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP040098.1\|WP_170180311.1\|2462012_2462873_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP040098.1\|WP_170180312.1\|2462884_2465002_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP040098.1\|WP_137424958.1\|2469694_2470165_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137424954.1\|2466316_2466463_+\|SHOCT-domain-containing-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137424961.1\|2472332_2472815_+\|chemotaxis-protein-CheD	unknown	unknown	gnl\|CDD\|319352
NZ_CP040098.1\|WP_137424959.1\|2470186_2470504_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137424945.1\|2455272_2456133_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP040098.1\|WP_137424944.1\|2449848_2454900_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225953
NZ_CP040098.1\|WP_170180309.1\|2448343_2449114_-\|DsbC-family-protein	unknown	unknown	gnl\|CDD\|239318

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137424950.1\|2460537_2460759_-\|hypothetical-protein	gnl\|CDD\|223515	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].	1.0711e-08
NZ_CP040098.1\|WP_170180313.1\|2468041_2468608_+\|hypothetical-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	5.51122e-07
NZ_CP040098.1\|WP_170180310.1\|2458078_2459374_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.50025e-35
NZ_CP040098.1\|WP_137424957.1\|2468604_2469456_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.1087e-13
NZ_CP040098.1\|WP_137424949.1\|2459378_2460422_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.28006e-46
NZ_CP040098.1\|WP_137424953.1\|2465775_2466177_+\|flagellar-protein-FlaG	gnl\|CDD\|377090	pfam03646, FlaG, FlaG protein. Although important for flagella the exact function of this protein is unknown.	1.15229e-21
NZ_CP040098.1\|WP_137424962.1\|2472836_2473259_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.29339e-37
NZ_CP040098.1\|WP_137424946.1\|2456516_2457587_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.18934e-40
NZ_CP040098.1\|WP_137424947.1\|2457586_2457829_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	0.00271626
NZ_CP040098.1\|WP_137424955.1\|2466459_2468049_+\|response-regulator	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	9.51535e-70
NZ_CP040098.1\|WP_170180314.1\|2471426_2472293_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	2.9757e-102
NZ_CP040098.1\|WP_170180311.1\|2462012_2462873_+\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	9.66433e-47
NZ_CP040098.1\|WP_170180312.1\|2462884_2465002_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.87515e-52
NZ_CP040098.1\|WP_137424961.1\|2472332_2472815_+\|chemotaxis-protein-CheD	gnl\|CDD\|319352	cd16352, CheD, chemotaxis protein CheD stimulates methylation of methyl-accepting chemotaxis proteins. This family contains bacterial chemotaxis protein CheD that stimulates methylation of methyl-accepting chemotaxis proteins (MCPs). The CheD chemotaxis gene is not found in the Escherichia coli genome, but is present in many other organisms, including B. subtilis, where CheD appears to have two separate roles; it binds to chemoreceptors to activate them as part of the CheC/CheD/CheYp adaptation system, and it deamidates selected residues to activate chemoreceptors, enabling them to mediate amino acid chemotaxis. CheD has been shown to catalyze amide hydrolysis of specific glutaminyl side chains of the B. subtilis chemoreceptors McpA, McpB and McpC; deamination by CheD is required for the chemoreceptors to effectively transduce signals to the CheA kinase. CheD's ability to bind the receptors is controlled by CheC via a competitive binding mechanism; substituting Gln into the receptor motif of the signal-terminating phosphatase, CheC, turns the inhibitor into a receptor-modifying deamidase CheD substrate. Also, CheYp increases the affinity of CheD for CheC, controlling CheD binding to the receptors through its interactions with CheC. Thus, high levels of CheYp means CheC is a better binding target for CheD than the receptors, resulting in decreased CheA activity. The CheD structure reveals a distant homology with a class of bacterial toxins represented by the cytotoxic necrotizing factor 1 (CNF1) as well as a class of proteins of unknown function represented by B. subtilis YfiH. An invariant Cys-His pair forming a catalytic dyad is observed, and is required by the toxins for deamidation activity.	9.05771e-54
NZ_CP040098.1\|WP_137424945.1\|2455272_2456133_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.12616e-58
NZ_CP040098.1\|WP_137424944.1\|2449848_2454900_-\|hypothetical-protein	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	1.39227e-33
NZ_CP040098.1\|WP_170180309.1\|2448343_2449114_-\|DsbC-family-protein	gnl\|CDD\|239318	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.	3.22577e-34

>NZ_CP040098.1|WP_170180312.1|2462884_2465002_+|response-regulator
MNGAAQELLRVEFSNLRHQREEMIAVLGMIQRFSQLVPAKTSLQEICNHLVRILIELTDFERSSISLWDDKGGFLRLVSSFGFEGLLEDSGDPVYRWSESHAFNDKVTRRVFDTRDALFVEDMRRDPVPVKADAVILPVSLVCLPLLDVGVLLLSAGQPRQFSSQTRRNWMLVSDIIGHLILGTSLNDRLNAANHSLAVEVDRKTRALEEKTRAMEAANTFLEQVLDHTPQGICILDNEGKIDRINAVMERLLGKPVGEIRRRSAGIFFEDPERCKELLEKARKGQRIRLNDVVLVNAAGCRYPTDIFLSPIEGDDSDRCGYLLMVEDITEKKTFADQLMRTEKLAALGTMAGGVAHDFNNILMTILGNTQLLVQHLGSGDPEIGRRLQHIEQAVNDGAHIVRRLQKFTEKDRDPNAEENLCDVSDAIKDVVELTRPRWKNAAEKNGAKIEVRLETQPRCRAAVHRSDLREILTNLVFNAIDAMPDGGELVLSSRTEGDWVVIEVADSGVGMDEEVQKRIFDPFYTTKGVGNSGLGLSVCWSLVKRYGGDLVVRSHPRRGTTFVIRLPGAGEAETACGIQSGSSRKIGGYRLLVVDDEKEILDLLGDMLRLMGHKVTAAHDPGEALSILERDHFDLVLTDLGMPVISGWDIARKSKERLPQIPVVLVTGWGAQYEDEDLTGRGIDLVVSKPLSYQKLMGALEKFL
>NZ_CP040098.1|WP_170180311.1|2462012_2462873_+|HDOD-domain-containing-protein
MGHLSAHQADIRHRVLEVDDPPPLGEGLERFLQTLNDDQLTAEQLESAIGHDQGLAARILKMANSAFYGYRGSIRTLSSAIVTLGFPEVKSLCLCALLVDRFDKAQHLSREEKDTLWKHAFLTGTVAWALVKKRPWIQESEAYFLGVLHDVGRLVLAAHFYDDFQAISVQSHLDGLSLWETEQRYGITHTDIGQWVGTHWGFPEEYVRVLGHHHRPDRAPSCRPECQLVFVADGLAHVKSAPQWAWEPFTLSVRRDLYIGEEEWAAAVDGMDALVEQVEGLWNALR
>NZ_CP040098.1|WP_137424950.1|2460537_2460759_-|hypothetical-protein
MGCGCPVIASDLHATRDVIGNGETGRAVSPGQSPSLAEVTCTALTRHNLMIDHSDCGRKWAHCHFDRNQAEEK
>NZ_CP040098.1|WP_137424949.1|2459378_2460422_-|glycosyltransferase-family-4-protein
MIKKNVPQPAVWFPTVRAGSGTDVFTERLAEGLSRRGIRAGITWLPLRAEYAPWTVPIPKPPAWANVVHTNSWLHPRFVPKNLRTVVTVHHSVHDQAFMPYKTPPQKIYHRIWIRPIEARNLKRADVVTAVSRHVALQVKKLSGRRDVVVIPNGIDVEHTFTPGPEREPHHPFRLVYVGNWMKRKGVDLLAPILEKLGPDFELLYTADRSGAHGRYTLPSNSRGIARLNTLALVKAYRTSDALLFPSRSEGLPLTPIEAMACGLPVIASRTSSLPEVVGNGSTGILCPVNDIEAFTVASRELSLSPGLWQTMARQARERALKHFSLNSMINGYLPIYFKCLEGQKDQ
>NZ_CP040098.1|WP_170180310.1|2458078_2459374_-|oligosaccharide-flippase-family-protein
MWQPGRLAGDTARMGLGLGLRALGQALIFIIFARTLGVEDYGAFTALIALACFVGCFAGFGGHVLIVRDVAREPSSFPQAWGATLALLGLSTPLLMLVYLVLAWTLPIPSVPYSAVVAVGLGELIFGTTANAASYAYRGFQRMGRAARLQSTPVFFRLVAAAGFLLWSTTQPSVEPPLVLWSYCYAGASLVAAMYALRLIQQDLGKPSMPARSLLQKWFFDGLPFSIWGVGESLYGDADKFMLARMDSLTHAGSYAAGYRFSGMAFLPLHALLNAAAPRLFHIGIRGLQGTRRAVLPLAPWTLGYALAVGSALFLGAPWMARLLGGDYSHTIVTTRWLAWLPLATTPRLLMQYALATSGRQGTAMVAVVLGGGLNILLNCYWIPVWGWQGAALATYAAEAGMAVTMLVLLLNIPANATERIQPTGADQCLP
>NZ_CP040098.1|WP_137424947.1|2457586_2457829_+|class-I-SAM-dependent-methyltransferase
MNRRPHAVGDLSSRYLKAQKIERLLGLTQRCRPIRLLDIGAGSGGIAHYFATRACGEYTVTAVDVVDGCGSFRTTSRVTL
>NZ_CP040098.1|WP_137424946.1|2456516_2457587_+|glycosyltransferase-family-4-protein
MERLGWHIVKAFSESFHVHVIGPEGCGKYLPRKVTCTEVPLRPLGIFLGKTALNALRQAVGFKPEITFAGSGLTAPMALVAARLSRSRSYAYVHGLDLVVPRTVYRWFWLPCLRLLDGIIVNSRATFAIAERAGIASERIRVVHPGVTMLELEARAASWFRSAYGVGDRPMLLSVGRLTRRKGLMHFVARVLPTIVRKKPTACLYIVGDVPRGALMAEAEEPEDILRAARSAGVSKNVCWLGHLPDEALQKAYAASDVHVFPVQDLPNDPEGFGMVALEAAAFGTPTVAYAVGGVVDAVADGVSGFLVAPGDTAALAEAVLSLMDKPMPREKVRRFAEGFAWPRFNKAIVRAVGAD
>NZ_CP040098.1|WP_137424945.1|2455272_2456133_+|glycosyltransferase-family-2-protein
MSKVSIVIPAYNEALNIGNTISEIREILPDAEILVVDDGSTDDTAEAARKAGAYVWSHPYNIGNGAAVKTGIRLVSGDKVVLMDGDGQHHPADLPKLLEAAQKFDMVVGARLSDGHANGFRRWANRFYNTLARYATKFPVKDLTSGYRVFDRETVLRYLYLLPNTFSYPTTITLAYLRSGRTVCYVPVRVRRRKGKSKIMPVRDGMRFFLIILKVTTLFSPLRIFLPVSLAFWGLGLLNYAYTYVTAGRFTNMSALLMTTSIILFMMGLISEQITQLRYDRVENGG
>NZ_CP040098.1|WP_137424944.1|2449848_2454900_-|hypothetical-protein
MKRRFIVSLTIFTFLVSPGGAPDVLAGQCDPPPFISAGASPMVMLIMGRDHKLYYEAYNDAQDLDEDGKIDVGYKHSIDYYGYFDPYKCYTYTTTGTERFIPERYTADKYCGGTDEWSGNFLNWLSMSRMDILKRVLYGGQRIADNTSETVLEGVYIPQDSHSWGKEYAGDDTRRLTPYEAPTSGNRHLFCVTSLNEGEAHKILVALNDSHRVWDWATTERPVCSGPVTPDYYRFVRVQVCSVDADKGLEQHYCKVYPGGGGVAKPIGLLQKYGEGDGSKVCSKTSIPCQTDAGCGPNDGICVERAPLYFGLLTGSNTKNLSGGVLRKNIWSVLDEIDAQSGIFQTSESDRGNIIMTLDRLRPVGFSYSDYSYGDSDGSTCGWITDRPLSEGECRMWGNPVAEMMYEALRYLSGKGSPTDAFNYTTNDDDAGLKLSKPDWGIRKGADYLQPYDIFPWCAKPSLIVLSDINPSYDSDQVPGADPDFGSFTGDLEDLDVSELVNTIGTHESLAGGSWFIGESGSVYDFICTPKNVANLSSIRGLCPEEPTKQGSYYSAAVAYYGKTKIAEAEGMEDVTTYVVPISSPVPDINIKAGSGFARIIPIGKSVSGSHGVKAACADRCTITQDDDGLHISDCAADAYCPSNQIVDFYVDEITYDADGNMTSAKFRINFEDVEQGADHDMDAMVIYEVQPAVGDGQVKVSLTSDDAAGSIDQVLGFIISGTTEDGVFLPVKDKDVSEEDSDTPSAVSSLEDDRTWPKTFTLSGSPSGVLKNPLWYAAKWGGFDDINGNDVPDLQAEWDKDGDGIPDSYVANPLKLEEKLEEAFVAIPSKGGSAGAVATVIQEVLGEDLVIRGAFTTYEDDPSRYLWKGHLEAYWPYEGCSDYTDQSACEKLAGCKWFGDKCIGEIYSFQKDVNIGKFCADAGHTGGHCWDAGTYLTSSGRKIFTMINGEQKDLKATESTVVSALENDIDFDGDGTVDGSDAESLIDWMHGVWDGSWTGVARDRQGWLLGDIVYSSPVVVGPPSVGAVDPNIAGDCSCECGVDTDCEKTCFYCYRTVQTDRPKVVYVGANDGMLHAFTAGVWWEDPNPAADNDSDGSADESHWIYDPNEPDSRCDGQPCTGKAEVGKERWAYIPGNLLSEVKELARAGYGTPSGCAHRTMVDLSPTAWEVFIDHDGNGSREWRTVIIGGERGGGDVYFAIDVTDPDSPQVLWEYSVLRNLFLPPATGSDAAETPFRNLDVYNYAKTLPVSWSVPYVGHLTLPSSLTLAADDRVEPLEPGLPSVSANRARGASDLSGWFAFMGSGTRVFNLDDFPAALTDDQKRATLKPYLLTIDIEKGINVFQFLWPQILDHWSEKWPDKTSGSNTIPYAMGDPVVLDVWNQVGAVLSDGSIDHIYLGDLNGNFYGLKFNLESAKGLKLDVWRTKDLSDTSNLFRSDRQPVTVMPVAAFDEHRNLRLFFGTGKFENILGSSDDKTDPARMSFYGLKDSTLRPSDFTGGFTTPGGLDVKADFHCLTSTFETGCSWLQSDGSPDCCESVCPSGCWNCVYDLLSPGERVVDSALVAGGTVFFTTFVPKNDPCSAGGDAFLYAVDYLCGVPKRDSFEDSSFTEVTTTPDQLDTGEYTAVVEGDKVTAYVLKIGQGMPSRPVMNSSGELIVQTSGTAIHWLHVDVGPTVKAMGWKVK
>NZ_CP040098.1|WP_170180309.1|2448343_2449114_-|DsbC-family-protein
MRSGTLRFRRCLCLLVLLFFAAAAAAPPQTEGTSGDCPDLEHVRSLASRVFPKEAEIRSVQPAPVSGWCEVQVLFKGQQRIFYVDKDGAFFFLGEIIDVERGVNLTRRATEAGNRFTAEEMKKLEDLAALRLGDQEPVVYLATDPQCPYCARAEKILEDMAQNGDLSAKILFFPLASHKGAKELCISVICDKKGMHEFRSGYQSDNQCDEGRRLIEETVGFLSSKGIAGTPAYIFPDGTYHLGVMSKERLLQRLKE
>NZ_CP040098.1|WP_137424953.1|2465775_2466177_+|flagellar-protein-FlaG
METKVENIKPLVAESWVRQDQSWVQRELVRPVPKDEGISSAQAKKEEKPPSDDMRLAKERPEEVKTLVEEVQSYLEDLNIRLKFIVHEETGDVVVRVLNKETGELIREIPPEELLKLRQKLEELRGVLFHGEV
>NZ_CP040098.1|WP_137424954.1|2466316_2466463_+|SHOCT-domain-containing-protein
MEFRSTDSGRIISELERLKDLRREGMLDEAEFERLKRQIFARRESSAE
>NZ_CP040098.1|WP_137424955.1|2466459_2468049_+|response-regulator
MKILIIEDDIFLGDILQSYLQQLGHEEVRVCPRGLEAEALLEKRTFDCAFIDLKLPDIDGLSLLERIKGRDRTLPVIMMSGFPTMESTIQAMRKGASDFLTKPFTLQDLALSLERVTKERILLLENLGLKLECQAQRQLKAVNVELQEKVREKERLFEISRRIDEVRSSEDLYATIIQLAHRVTQADRVGFFVYLPEHDRIALISEKGFCEAGLTRPVFSVDASRLKERVGSGSRPVLVRPWDFLRGWTGLDDEPGAGAPGSGSLFALPGGESERGMLQASYRCWPLWIRGELFGLLMLSQNSKNGSLSASQTGLLDFLMRKAALAVENMALYESLISNFYGILKSLVNALEAKDPYTGKHSERVTIFAVRLARAMGCRPNDIEVLRTVGYLHDIGKIGIADKILNKPGRLDPEEYEMVKRHPVIGEAIVRELGLSAEERAIIRHHHERWDGKGYPDGLSGTDIPFLARIVTVADAFDAMTSKRAYRDSLPLEQAKQEIRDSRGRQFDPDVVDAFFAVMEERKGSDGDE
>NZ_CP040098.1|WP_170180313.1|2468041_2468608_+|hypothetical-protein
MNNREFLRVEVPELRVHYNLIPENCSIPHLLGFVEKREPSSGLEPEGCDPVQEMILRMVRRVESKLDRILGHLERDGYRPSYEFQGQVVNISGGGLSFATVNDHAVGAVLELCIFPQFGDPRPLFAIGKICSIEPYSSDVYPAASLVGVKFVEIEEEAREAIIRLVFQMERKRKQRDVEEGWNPGGKT
>NZ_CP040098.1|WP_137424957.1|2468604_2469456_+|HAMP-domain-containing-histidine-kinase
MTVGIAKESGKGDGEGEALRRSLPAHCLEALFVKDRLAHTGSLVRGLIHNLNGPLQNMSILLELLVKGYDRMDEAARDLFKENPDQWARLYGNQRQRVDRLTEQLAVFSDMLRDFVVLHEVEVGEGEVDINLVLSKLARVFVADLFFKHQVELELKFSQRLPFVKVAGRHLIPTLMHLFDNAVTSLKGCPVRRITVESKAEAGRVRVFIRDTGCGFDGPEAPDDLFRPFHSAWPESVLVHCHDKVFLGFGLFAARRLLEPYGGLVSLSRAEEETVAAVDLPVS
>NZ_CP040098.1|WP_137424958.1|2469694_2470165_+|hypothetical-protein
MKISETQHHAPLQNESERSRRTGTAGSPGFQEMLDEEAGASVSPAVSSPGETEAVSPAGGLAPFSNLEVPTEGLGASVEAIDHLIEGFHRLQQGLESPVVTPREVEGRLEALAQEAEGLRGRFEDLPRDHGLRLLAEEIQVLGYVESVKWRRGDYL
>NZ_CP040098.1|WP_137424959.1|2470186_2470504_+|hypothetical-protein
MKSLPSTGKIIAILAVLHGFLGGPGVSVECREPLGPPMLLAELRESDEAVVHRAVPERPSCLEEEEWEKQEKAWNMLQDMILDLDFERKSFRPVVPHESPERPGR
>NZ_CP040098.1|WP_170180314.1|2471426_2472293_+|protein-glutamate-O-methyltransferase-CheR
MATIELGDSGSFMAHPMSESLFRQFSELVYEQCGINLHEGKRTLLEARLAKRLRATGMDCPEEYYRYITSAEGRAELIHFLDSVSTNLTAFFREVQHFEYLERHVLPEIVERKRAERRFRLRAWCAACSTGEEPYSIAMTVLSVLDRPETWDFKILATDISTKVLAIAEQGRYSRERLAKVPEAYRRLFFRGSPGGGSADTFEVIPEVRRIVTFRRLNLKDPYPFHGPFDFIFCRNVMIYFDKSTQESLINRMAAYLAPGGYFFVGHAESLTGLKHPLIYVKPAVYRK
>NZ_CP040098.1|WP_137424961.1|2472332_2472815_+|chemotaxis-protein-CheD
MQRVIIRVADMAVSNRPDEILITYSLGSCIAVVIYDPRVRVGGILHYMLPESSMDPEKAKRKPAMFADTGIPMLFKASYALGAQKKNLTVKVVGGAHILDENGVFNIGKRNYMALRKIFWRNNVLVSAEHVGGSVNRTVRLMMDTGQVILKVSGLGEMEL
>NZ_CP040098.1|WP_137424962.1|2472836_2473259_+|response-regulator
MSYNVLIVDDSKSMRSVIKKVLRISGFRSGEILEAENGKEALELLKGNWVDLILTDIYMPVMDGIEFIRRLEQEETLKDVPVLLLTTEGNEERLQEAMALGAKAYLRKPFQPEAIRALLNQILGETDGREPEGCDEGCDF

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Crispr_ID: NZ_CP040098_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_22

2510441-2510534

Orphan

Consensus_repeat	Method
ATTGCCGGTTTTACGGGTCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_22

>merge|NZ_CP040098|22|2510441-2510534|CRISPRCasFinder
ATTGCCGGTTTTACGGGTCGCGGTAGAGAGGACATGCGGGCGAGACGCCCGCGCTCCCAGGTCAACGCGGCATGGCCGGTTTTACGGGTCGCGG

>NZ_CP040098|22|22|2510441-2510534|CRISPRCasFinder
ATTGCCGGTTTTACGGGTCGCGG	TAGAGAGGACATGCGGGCGAGACGCCCGCGCTCCCAGGTCAACGCGGC
ATGGCCGGTTTTACGGGTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_170180320.1\|2508664_2510116_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NZ_CP040098.1\|WP_137425002.1\|2514246_2515389_+\|cobalt-precorrin-5A-hydrolase	unknown	unknown	gnl\|CDD\|235610
NZ_CP040098.1\|WP_137425007.1\|2520127_2521555_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP040098.1\|WP_137425000.1\|2512166_2513450_+\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	unknown	unknown	gnl\|CDD\|381171
NZ_CP040098.1\|WP_137424993.1\|2500842_2501607_-\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|224210
NZ_CP040098.1\|WP_137425005.1\|2517860_2518223_-\|NifB/NifX-family-molybdenum-iron-cluster-binding-protein	unknown	unknown	gnl\|CDD\|224350
NZ_CP040098.1\|WP_137424997.1\|2507451_2508648_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180433
NZ_CP040098.1\|WP_137425008.1\|2521600_2522524_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|349764
NZ_CP040098.1\|WP_137425006.1\|2518331_2519585_-\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NZ_CP040098.1\|WP_137425001.1\|2513465_2514242_+\|precorrin-4-C(11)-methyltransferase	unknown	unknown	gnl\|CDD\|381168
NZ_CP040098.1\|WP_137424994.1\|2501939_2503097_-\|flagellar-hook-basal-body-complex-protein	unknown	unknown	gnl\|CDD\|274616
NZ_CP040098.1\|WP_137424999.1\|2510796_2512170_+\|cobalt-precorrin-5B-(C(1))-methyltransferase	unknown	unknown	gnl\|CDD\|234615
NZ_CP040098.1\|WP_137425003.1\|2515289_2516201_+\|precorrin-3B-C(17)-methyltransferase	unknown	unknown	gnl\|CDD\|381173
NZ_CP040098.1\|WP_137425004.1\|2516292_2517138_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP040098.1\|WP_170180318.1\|2503386_2504106_-\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235847
NZ_CP040098.1\|WP_137424992.1\|2500290_2500779_-\|flagellar-basal-body-associated-FliL-family-protein	unknown	unknown	gnl\|CDD\|224496
NZ_CP040098.1\|WP_170180319.1\|2504146_2506147_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350657
NZ_CP040098.1\|WP_137424991.1\|2499285_2500272_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP040098.1\|WP_137425810.1\|2498875_2499217_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|236154
NZ_CP040098.1\|WP_137424990.1\|2498524_2498842_-\|FliO/MopB-family-protein	unknown	unknown	gnl\|CDD\|274610

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_170180320.1\|2508664_2510116_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	1.07097e-62
NZ_CP040098.1\|WP_137425002.1\|2514246_2515389_+\|cobalt-precorrin-5A-hydrolase	gnl\|CDD\|235610	PRK05788, PRK05788, cobalt-precorrin 5A hydrolase.	1.01297e-96
NZ_CP040098.1\|WP_137425007.1\|2520127_2521555_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.68688e-157
NZ_CP040098.1\|WP_137425000.1\|2512166_2513450_+\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	gnl\|CDD\|381171	cd11644, Precorrin-6Y-MT, Precorrin-6Y methyltransferase (also named CbiE). CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.	7.57391e-71
NZ_CP040098.1\|WP_137424993.1\|2500842_2501607_-\|flagellar-motor-protein	gnl\|CDD\|224210	COG1291, MotA, Flagellar motor component [Cell motility and secretion].	1.12363e-92
NZ_CP040098.1\|WP_137425005.1\|2517860_2518223_-\|NifB/NifX-family-molybdenum-iron-cluster-binding-protein	gnl\|CDD\|224350	COG1433, COG1433, Uncharacterized conserved protein [Function unknown].	8.68391e-29
NZ_CP040098.1\|WP_137424997.1\|2507451_2508648_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180433	PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.	0
NZ_CP040098.1\|WP_137425008.1\|2521600_2522524_-\|4Fe-4S-binding-protein	gnl\|CDD\|349764	cd03110, SIMIBI_bact_arch, bacterial and archaeal subfamily of SIMIBI. Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.	9.01889e-105
NZ_CP040098.1\|WP_137425006.1\|2518331_2519585_-\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.25588e-135
NZ_CP040098.1\|WP_137425001.1\|2513465_2514242_+\|precorrin-4-C(11)-methyltransferase	gnl\|CDD\|381168	cd11641, Precorrin-4_C11-MT, Precorrin-4 C11-methyltransferase (CbiF/CobM). Precorrin-4 C11-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. In the aerobic pathway, CobM catalyzes the methylation of precorrin-4 at C-11 to yield precorrin-5. In the anaerobic pathway, CibF catalyzes the methylation of cobalt-precorrin-4 to cobalt-precorrin-5. Both CibF and CobM, which are homologous, are included in this model. There are about 30 enzymes involved in vitamin B12 synthetic pathway. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared in both pathways and several of these enzymes are pathway-specific.	2.62008e-136
NZ_CP040098.1\|WP_137424994.1\|2501939_2503097_-\|flagellar-hook-basal-body-complex-protein	gnl\|CDD\|274616	TIGR03506, FlgEFG_subfam, flagellar hook-basal body protein. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.	7.26159e-39
NZ_CP040098.1\|WP_137424999.1\|2510796_2512170_+\|cobalt-precorrin-5B-(C(1))-methyltransferase	gnl\|CDD\|234615	PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed.	1.23635e-118
NZ_CP040098.1\|WP_137425003.1\|2515289_2516201_+\|precorrin-3B-C(17)-methyltransferase	gnl\|CDD\|381173	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH). Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.	3.14381e-135
NZ_CP040098.1\|WP_137425004.1\|2516292_2517138_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	6.99948e-72
NZ_CP040098.1\|WP_170180318.1\|2503386_2504106_-\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	6.16953e-40
NZ_CP040098.1\|WP_137424992.1\|2500290_2500779_-\|flagellar-basal-body-associated-FliL-family-protein	gnl\|CDD\|224496	COG1580, FliL, Flagellar basal body-associated protein [Cell motility and secretion].	2.352e-29
NZ_CP040098.1\|WP_170180319.1\|2504146_2506147_-\|hypothetical-protein	gnl\|CDD\|350657	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains. The flagellar hook-length control protein FliK is a soluble cytoplasmic protein that is secreted during flagellar formation. It controls hook elongation by two successive events: by determining hook length and by stopping the supply of hook protein. It contains an N-terminal domain that determines hook length and a C-terminal domain that is responsible for switching secretion from the hook protein to that of the filament protein, by interacting with FlhB, the switchable secretion gate.	1.87245e-24
NZ_CP040098.1\|WP_137424991.1\|2499285_2500272_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	1.16266e-136
NZ_CP040098.1\|WP_137425810.1\|2498875_2499217_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|236154	PRK08119, PRK08119, flagellar motor switch protein; Validated.	2.74326e-44
NZ_CP040098.1\|WP_137424990.1\|2498524_2498842_-\|FliO/MopB-family-protein	gnl\|CDD\|274610	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.	2.09114e-12

>NZ_CP040098.1|WP_170180320.1|2508664_2510116_-|hydroxymethylglutaryl-CoA-synthase-family-protein
MIGITAYGAHIPRYRLERKRIAQAMSWINLATLGLAAGEKAVANVDEDAVTLAVAAARNALTTAPDLSPTQLFVASTTLPYLERQNSAIAAAALNLAPETETADVTGSFRSGTTALIQALRSLENGGSGGALIAAADARTAKPGSAEEHVAADAGAAVAVGTEDLLAVFRGALSLTADFPDRMRDCSQRFSRTWEERWIRDEGYLKIIPRALAAFFEKQGTDAQAYQKIAYPCPFPREHAAIAKALNIDPQRVVDPLTAAVGDTGSAHPLLLLVHALEQAEPGDNLLVVGFGSGVDVLHFQATDRIRDRRPALPLSRQIERKALLSNYEKALAFRNVLPVETGLRGEFQAESPRSVMWRHRSTIFGLVGSRCRHCGTPQYPPQRVCAVPDCNAVDAMDPYPFASRTGRIVSYTADHLAFSYDPPQIYGIVDFDGGGRMMLDFTDCSLEDLQVGMAVSLAFRRKYLDKERGIHVYFWKAVPTVS
>NZ_CP040098.1|WP_137424997.1|2507451_2508648_-|acetyl-CoA-acetyltransferase
MAIGIKDKVAIIGMGCTRFGERWDAAAEDLILEAFMEAMEDAGIERREIDAAWLGTCFDEVNVGKSGIPLSQTLKLPNLPVTRVENFCATGTEAFRGACYAVAAGASRIALAVGVEKLKDTGYGGLPGFDTAMGVFQHFTLPNFTAPGAFALLATRYFAKYGIDPEEGKRALAKISSKSHRAGALNPRAHLRKPVTPEQVLKAPIIAWPLGLFDCCGVSDGAAAAIVTTPEIARSLRKDPVFVKALQIAATSGEEMLTTSWDGSYLKTTTEAAARAYAEAGIKNPRDELSILEVHDCFSITELVTYEDLGISPRGRAILDVNEGLFDLEGKIPCQSDGGLKCFGHPIGASGIRMIYEVVKQLQHKAGERQIPNPTLGLTHNLGGIPSFSVCSVSIFGL
>NZ_CP040098.1|WP_170180319.1|2504146_2506147_-|hypothetical-protein
MVAILLNSAQLLENVTAAEHRKIGRTILDSDFTKEMKTQENLLLGKSKASPGNDDTLNAPQRLSLFQHFEDRARLAGALRLKRKKVEEELALGDVQGLQEILAQLGFSPECRAACLEAAGGDRHIRLDALMAALSEKPAAQSITEVPAAPAEHVANLLETLLYNGGPVEGVSEDVAVRKTGSYSAAEFKEMLERIADKVSRDAAFSEENDDAMRFKGDAGGRTDGRAEEDSSGNTPSPNGPSNPKRSWNTMPNFSKSDESLFGDTKAPEDGEPTAKDPVEWTESEPGLASEPLTDPPRPRDFKAPKVLAAHADQRPGTSSAESTLNSGDSAALNESAEGAPPSQPQTEGANPVKPNPRAFVETVNTEPPSGASAPEQLEHASVKAADQAKNGLPAAAPTEMEGLGRTHGSRQAQAGERAPLEKSDSPTPPAPSASSSGNENTGKQENPSHGHGSPGSLFEAETAGLKGSPLTAEPASGGENPGSGDNLRSGSGFQRAIGQIVSLKLDGAGPSPAVNQPSIESRVPFYSSTWPSVVAERFQEMIRQNRHRLTLEVEPKHLGKLVLRVETRNDQVSTWITAEHEQVRELLARNAGFLRQMLAEQGITLGSFSVDVRKEKEHGRFSPDEAKVDPGSGTGTASEKKPLSAGVLPATARRLNDGQTISLVA
>NZ_CP040098.1|WP_170180318.1|2503386_2504106_-|flagellar-hook-assembly-protein-FlgD
MNVNSYQPSYTLPAAQGPVPSDGPKKTIADMGSFLLMFTTQLQHQDPTNPMESHEMAAQLAQFSTVEQLTQINGTLQTQQNYLSSINNTQLLTLIGKHVTAADDRVRVNGGEVSQGGFRLEAPAEVTVSIQDADGRVVRTLDMGVLEAGEHALAWDGTDSKGKTVTDGVYTFQVEATGAQGQPLEATTTVSDSVYGFNMEEGQSYLVLGDADGLKVPIGALLHIRDTTPEPTPTEGTSL
>NZ_CP040098.1|WP_137424994.1|2501939_2503097_-|flagellar-hook-basal-body-complex-protein
MGISQAMNIGVSGLNSSSTALTVVGDNIANSNTTAYKTNSARFGDMVAGYYPTLSRDRDREGAGTAIMGIVTEFSQGSLLSTTRWSDVAINGEGFFSVQVPNTNNIYYTRDGGFHMDKDGYLVNELGYHVLSRAGEAIKVDSPQDAWYTNYYIDSNGQIWGTPTDPQYLTYYSLEATGSPELFGGTLYFTEAYDTASFGDVTITITDRENPTVTGTITLNNTLYNHDADGDGTNDCFYGTIDLAKLVENGDITWPAALPEGHYSMEVTAPNPNTDPPEIQFLYANMDPQPILDGQLRVSTFANNNGLIRQGSNLYTQGPESKFPIHGTAGDGIRGNLFSYTIEGSNVDIAKEMVNMITYQASYNANSKTITTAAALLDVAVNMVR
>NZ_CP040098.1|WP_137424993.1|2500842_2501607_-|flagellar-motor-protein
MDIATLIGIFSAFALVLISIMIGGSLTLFFNIPSIFIVFGGTIGATMIHYPIRDVLSVMNVAKNVFFTRVWSTQEVVDRFVEFANKSRREGILALESELANVDDPFMVKGLQLTVDGMEPDSIKEILETEIEYLEERHRSGAEVLNTMATFFPAMGMIGTLIGLVQMLSSMEDPSTIGPAMAVALLTTFYGAVAANLVCLPMAGKLRKRSQEETLVKEMIISGIVAVANGENPRIIEQKLHSFVPPKARASRFD
>NZ_CP040098.1|WP_137424992.1|2500290_2500779_-|flagellar-basal-body-associated-FliL-family-protein
MEKKKPDAKPAEAPAKKKFPLVKIVMGVVIVVVLAGGGFAAWSYFSAKGGLPLPMSPAPASPKPVLQDMETFLVNLSDPQGERYLKLTMRLRLSNPQTAAEFTERNSELRDAVLMLLSSKERDDISTLSGKMALKRALMAQMNRLLRQGQVEDIYFTEFLVQ
>NZ_CP040098.1|WP_137424991.1|2499285_2500272_-|flagellar-motor-switch-protein-FliM
MEQVLSQEEVDALLKGLSNGTIEAEQAEEDLDQDGVRPYDLTSQDRIIRGRMPTLEIINDRYARLHRITLSSTLQRIIDITVTQKEMIKFGDFLRTLPVPTSLHILKMDPLRGHVLLVVESRLIFNLVDCFFGGTGRSTFKIEGRDFTSIEQRVIHKVVRMALNDLEQAWKPVMPVRFEFVRSEVNPQFASIVPPTELVIVVHYELELENLIGKIILCLPYSTIEPIRSKLSASYQSDQLEVDQEWIDRFVRRLQEVPVEVVVQLGRATIKGRDLLQLHVGDVLVLDQDVQHPLRVFVEGVQKYKAAAGVHKGSLAIQIEEVIPPPRF
>NZ_CP040098.1|WP_137425810.1|2498875_2499217_-|flagellar-motor-switch-protein-FliN
MDAPNVSQEETKNPAARGIENGSGKAESRGLDFILDLPLEVSVELGRTKLLINDLLQLGQGSIVELNKFAGEPLEILVNQKLVARGEAVVVNEKFGVRITDIISPLERVKQLG
>NZ_CP040098.1|WP_137424990.1|2498524_2498842_-|FliO/MopB-family-protein
METGIQIAKMLMGLGVVLGVLFGAQYALKRWGIRLRPAAADAWVQVRARHALGPRHSLVVVTAGEKHYLLGLSPEGIRLLTPIDPPRDPSPSAATVLDPSAEKRG
>NZ_CP040098.1|WP_137424999.1|2510796_2512170_+|cobalt-precorrin-5B-(C(1))-methyltransferase
MRTLAGQDHSGKDVQVTVPDDDSPRNLRKGFSTGTAMAAAARAALRRALTGEAPAVVAVKLPMGFYLPIPVASSGTHGRRVWASVVKDGGDDPDVTHGAKIVVSVAAGRTAPAACSSSGKPPERAGVLLVAGEGVGKVTKPGLPIPPGEPAVNPVPRRCLVENLVEEWRRWKHLARPIQTAETNGVAEEPPWGAERSVADPKGPRVWLPFPESSGCNRVFLEVIVSVPGGEALARRTLNPRLGILGGISILGTTGIVRPFSHEAYEETIRSALRVARAAGATTVVLTTGGKSEKGVRALRPDLPPEVFVQVADFFAFSVEESRRLGFRAVVHGAFFGKVVKMAQGHRYTHAHRVPLDLKPLARRAAALGHEASLCEALAAANTARHALELLKAAEAHDVIESICRDAVAASRVFSGGRLHTELLLFDYDGRLIARTGDSRIDCREDSAGALGKGAAG
>NZ_CP040098.1|WP_137425000.1|2512166_2513450_+|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE
MRDVPSASGPKAWSPPRVVLAGVGMAPADVTARVREWLERAEVLAGGKRHLEWFADLPAEKIPLISPMDESLRRIVAVSSQRKTAVLASGDPLFFGIGRRLVERLGPERLITFPNVTAVQALFSRLGLPWDGVAVRSLHGRDDRSWLRVLRDTGKLALYTDAVRSPAAVARELLEAGMTDCDLAVGEDLGLPAERVRWMSAREASESDFSPLNVMAIIRRPEAAVRGEGALEALEPVFGLPDEAFHHRYGLITKMEIRSVVLAKLGLIPGLVLWDLGAGSGSVAVEAARTVRLAGVFAVEKRTERVEDIRANVRRLALGDVTVICGDAVEAVAELPDPDRVFIGGSGGRLEALLAAAASRLRVGGRMVVTAATLETVETARSFFARRGFACDITQIQVNRSSPIGSATRFEPLNPVFIVTAASAASG
>NZ_CP040098.1|WP_137425001.1|2513465_2514242_+|precorrin-4-C(11)-methyltransferase
MRHAIVFVGAGPGDPELITVKGRRLIEEADRIVYAGSLVPERLLAARKPGAEIFDSAPLTLTETHAFLLEGYRAGLRVVRLHTGDPGLYGAVREQMDLLDRDGVPYEVVPGVTAAFAAAAALKRQLTLPEVSQTVIFTRCSGRTPVPERESLQSLAAHRSTLAIYLSVHHLDRVVEDLLVHYPRETPVVVAYRVGWPDERLVQGTLETIVDRVRSEGIARQALILVGEVLEIGRQAPRSKLYDAGFEHGFRPGRTRGD
>NZ_CP040098.1|WP_137425002.1|2514246_2515389_+|cobalt-precorrin-5A-hydrolase
MAWEGDRRDESSRPGSIAVAAITAGGVRLALQIQAQLPGSICYVPRRHAFALVMGARPFDRLKDLVPEIWTRHRAMVFVMATGIVVRLIAPLVHQKMRDPAVVVVDEKGRFVISLLSGHWGGANALAESVARITGGLPVVTTASDVCRRPAIDLLARKAGLVIENPEALPRIARAVLEDEPLWLFDPARRLGLSQADLPQVRFWDESHPAWEPRRTSATAEAGDAAGEEPSGSAELIGVWVSEKASNPEGLWLRLRPRSLVVGVGCNRGTSAEEILEVVRRVLDDAGLAPPSIRNFASVDLKADEAGLLEAARRLDRPLEFFSRKDLRDVAVPRPSRRVAEHIGVPSVCEAAAILSAGSRKLLISKQKAGNVTVAVAGVD
>NZ_CP040098.1|WP_137425003.1|2515289_2516201_+|precorrin-3B-C(17)-methyltransferase
MRSSSNPERRKPEASHFEAESGQRDGGRGRGGLSLVSLGPGFVEHMTPRALAALADAEVVVGYRTYLDLVSELIQGKRTVASGMRKEVARCRAAIDEALSGSRVALISSGDAGIYGMAGLVFDICRERGVAVIPASADNDREPEDRSSGPAESDGVPLRVEVIPGVAAFNAAAARLGAPLMHDFAAVSLSDHLTPWPVIAGRLEAAAQADFVLAIYNPRSGSRPHRLSEARDILLRHRPAETPVGLVQRAMRDGEARRLATLGTLPVEWVDMQTVVLVGNSRTYVWNDWMVTPRGYLDKYDVE
>NZ_CP040098.1|WP_137425004.1|2516292_2517138_-|HDOD-domain-containing-protein
MATESSVQRVVLTAGDLPAMPHVASQVMTMVSNPDTTAQDLQRIISQDQSLAARVLKLANSSFYARSRSIATITEAVVVIGFRTIRSLVVASVTRDIFDNFGLTEKLLWEHSLGCGLAARTIAQSLRYSKAEEAFLAGLLHDVGKMILLIKFNDKMLSILEEVYNDPETSFVRMEQRLLGFDHAQVGQLLARKWQFAEEIEEAIGCHHAPARARLLPALTVIVHLANAFCHKLEIGPTKRPDLELSEVKSAKALKMSPAKIEDLLEEIRTIFAAEATTLFS
>NZ_CP040098.1|WP_137425005.1|2517860_2518223_-|NifB/NifX-family-molybdenum-iron-cluster-binding-protein
MKVAVTSSGQNLEAPVDARFGRAPSFLIVDTETMNFEVIPNQQNLQAAQGAGVQAAAAVARLKPDAVLTGHCGPRAFDTLRAAGIPVFVNVTGTVRQAVENYKAGKLQSTKAPDTGGHWV
>NZ_CP040098.1|WP_137425006.1|2518331_2519585_-|P-loop-NTPase
MGSCEKGSCGHGGAEKNAASQEEEQLHRQLQQIQHKLLVMSGKGGVGKSSVAVYIALGLANRGYKVGLMDVDLHGPSTPRMLGITGMFGMDEHKRLIPHRYNENLEVVSIEYLLEDRDSAVIWRGPIKHGVIKQFISEVNWGKLDYLVIDCPPGTGDEPLSVAQTIPDAHAVIVTTPQEVALADVRKSINFCRKVQMSILGLVENMDGLVCPHCGKEIDLFRRGGGRRTAERMQLTLLGSLPFDPRVVEGGDAGRPFMEGPSDTPFIQAVNRLIDAVEERCLPAEAPTAAKTVAAKPEVASAAGGNALKVAIPTAQGVLCNHFGHCEQFAILSVKDGRVDGREWVTPPPHEPGLLPRWLANQGIKVVISGGMGQRAISQFAEQGIRVVTGAPVMDPDALLQKYLDGSLETGPNVCDH
>NZ_CP040098.1|WP_137425007.1|2520127_2521555_-|sigma-54-interacting-transcriptional-regulator
MDSKISSSKPAENREPPATPLSCAGSTEIILNSIADGVFTVDRDFRITWFNRAAEIITGIPKDEAIGRPCCEVFRANICETACALRHTLETGKPIVDKPIAILTAEGKEIPISVSTALLKDAEGRVIGGVETFRDLSLVERLRRELHRRYSFGDMVSKSPAMQKLFAILPEIARSESTVLIQGESGTGKEVLARTLHSMSPRARGPFVAVNCGALPDTLLESELFGHVAGAFTDAKKARQGRFALAEGGTLLLDEIGDVSPALQVRLLRVIEERVYEPLGSSKSVKANVRIIAASNKDLEELVERGIFRKDLYYRVNVVKLWLPPLSERREDIPLLTQHFIDRFNRLQDKTVAGLSRETLAVFMHHDWPGNIRELENAIEHAFILCSDGLIRPEHLPEHLRAQSKRLPPEPGSTLKDVERRAIWEALERNAWRRMATARELGIDKNTLRRKMKRYRLTDPSPSRSESSLSDSFHL
>NZ_CP040098.1|WP_137425008.1|2521600_2522524_-|4Fe-4S-binding-protein
MRELVVISGKGGTGKTSLVGALAAVAQNKVLCDADVDAADLHLLLAPNIVQRHDFVSGRKAVIQADRCIECGECAKWCRFEAIDEHLVVNEFLCEGCGVCYYFCPAGAIDFIENHCGEWFVSETRFGPLIHARLGIAEENSGKLVSLVRKEARRLAEERNLQWILTDGPPGIGCPVIASIGGASAVLIVSEPTVSGIHDLARAAELAAHFGIPAFACVNKADLFWDAAREIEENCARKGIPFLGHIPFDPVVTRAQVDGLTVVEYDKNPVADAVRRFWEILEADIPRSTDETEANPTTSIPASMLDR

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Crispr_ID: NZ_CP040098_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_23

2637624-2640752

Unclear

Consensus_repeat	Method
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	PILER-CR
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CRISPRCasFinder
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CRT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	PILER-CR

42 spacers

cas2,cas1,cas6,cas3,cas5,cas7,cas8b5,WYL

The CRISPR arrays of NZ_CP040098_23

>merge|NZ_CP040098|23|2637624-2640752|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTACTGCAAGTCGATTGAATCTTTCAAATCATCCAGCGTGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACCGACAAGCCCTCTTTGCTGCTGACCTGTGGGGATACTTGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACCGCAAAATATTCGACTGCGCGGACAGCCTAAGCTCGGCGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTCTTGGTTAGTCGTACCATGTCGTGCGTCCTTGTTTTCGAGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATCGGTCTCGGTTCCGGCACCAGCCAAAGCAATGACGCGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTCGGCGCCACGCCATTTTTTCTCGGGGCCGTAAGGGCGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACACGTTTACAAGCGCTGAATATCCCCAGTTATCCTTCGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATCAAACAACCAAATATTGAATCCAGTTGGGTGCATTAGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACCAGCTAACACGGAGATGTGGGACTGGTGTCCAGATGTCGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACGGAACATGAGAACAAGATTCCGCCGGTTTTTCGTGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACGTTTGGACAAAGATGACAACTGCGGCGAAGACGGGATCGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACAGGCCACCTCGACCACCATATTCGAATCTGCTGATGGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACAACCACCTTGACGGCCTCGAGCCTGCCCAACTCCTGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTTCTGAGGGCCAAAAGCCAAAGTCGGAACCATCCCCGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACAGATTCTGCCATTGATCCCATTCGCAAATTGTTGGTGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATGATATCCGACGGGTGCCGGCGTCGGATATCGGCATGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACGATTCCGCGGGTACCAGGCAGTACTTCGTTCCGGCCGGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACGGCGTGAAACGGATGATCCAATCCAGGTAGTCCGATGGGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTTGGCTGCGTCCAATTCCAGCCCGGCTTTGTAGATTTGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTTAGAGATGGAGGGGTTGGGGTTGTTGCATAAGTTCGGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTATTTTTAATCATCTCGGCCCAGCTGTTCTCTATCGAGGTGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACCGAGTAGTTCCTTGGCCCGCTTCTCGTCGACGCGGAGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGAGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGAGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATTTCACACTCCGTCCTTCTACTTCGAGCAGATGCGCAAAGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACGTTGAATAGCCCCGGCGATCTCGCAGAGTAGTACCGTCGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACACTTCGAGCCTGTGGCATAGTACCGATATTATAGATATGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACCGTCCTGACTCCATCGTCCCATTGTGTGTGGTCCAATCGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACAGAGTGTAACCCTCCTCCAATTTGCCTGCATATCCGGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATGTGTGCGGTAGACGGTCCCAAACCGGAGTTCCCTGACGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACCCCATGAATCGCTTAAACCCACAAAAGCCATTTTATGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACCCTGCCGGCGATCAATCTTGTGGCCAAGGGATTGACGGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATCTGCAAAGTTAAGCGTGAGGGTGGACGGCACTTTTGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACGGCTATTCTAGCCCGGGAGTTATGCGAAACAGTTAGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCACGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTGGATGATGTCTGAGTCGGCCTCAGGAATGCTGATAGAGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCACGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACTGTATGGGGCCCCCATTCTTACCAGTTACCTCTTGGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATAAGTGTTACCCCTCTTAGCCGCGTGCCACTTCCATTGGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACCCTGTTGGAGCCGCCTGAGCGCCCCCGTGTATTCATCGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATTGACCGTGTGGAACTTTCGTGGGCCGCCGTGCCGGAGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACGCGATTACAGCCGCTCTGTTCCGGCGCCTTATGGGTGTAATCAAAGACGAATTCCCTGTGTCACCATCGGAA

>NZ_CP040098|23|1|2637624-2640311|PILER-CR
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TACTGCAAGTCGATTGAATCTTTCAAATCATCCAGCGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGACAAGCCCTCTTTGCTGCTGACCTGTGGGGATACTT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGCAAAATATTCGACTGCGCGGACAGCCTAAGCTCGGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TCTTGGTTAGTCGTACCATGTCGTGCGTCCTTGTTTTCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCGGTCTCGGTTCCGGCACCAGCCAAAGCAATGACGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TCGGCGCCACGCCATTTTTTCTCGGGGCCGTAAGGGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ACGTTTACAAGCGCTGAATATCCCCAGTTATCCTTCG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCAAACAACCAAATATTGAATCCAGTTGGGTGCATTA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CAGCTAACACGGAGATGTGGGACTGGTGTCCAGATGTC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGAACATGAGAACAAGATTCCGCCGGTTTTTCGTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GTTTGGACAAAGATGACAACTGCGGCGAAGACGGGATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGGCCACCTCGACCACCATATTCGAATCTGCTGATGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AACCACCTTGACGGCCTCGAGCCTGCCCAACTCCT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTCTGAGGGCCAAAAGCCAAAGTCGGAACCATCCCCG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGATTCTGCCATTGATCCCATTCGCAAATTGTTGGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGATATCCGACGGGTGCCGGCGTCGGATATCGGCATG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GATTCCGCGGGTACCAGGCAGTACTTCGTTCCGGCCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGCGTGAAACGGATGATCCAATCCAGGTAGTCCGATGGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTGGCTGCGTCCAATTCCAGCCCGGCTTTGTAGATTTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTAGAGATGGAGGGGTTGGGGTTGTTGCATAAGTTCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TATTTTTAATCATCTCGGCCCAGCTGTTCTCTATCGAGGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGAGTAGTTCCTTGGCCCGCTTCTCGTCGACGCGGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTCACACTCCGTCCTTCTACTTCGAGCAGATGCGCAAA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GTTGAATAGCCCCGGCGATCTCGCAGAGTAGTACCGTC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ACTTCGAGCCTGTGGCATAGTACCGATATTATAGATAT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGTCCTGACTCCATCGTCCCATTGTGTGTGGTCCAATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGAGTGTAACCCTCCTCCAATTTGCCTGCATATCCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGTGTGCGGTAGACGGTCCCAAACCGGAGTTCCCTGAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCCATGAATCGCTTAAACCCACAAAAGCCATTTTAT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCTGCCGGCGATCAATCTTGTGGCCAAGGGATTGACGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCTGCAAAGTTAAGCGTGAGGGTGGACGGCACTTTTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGCTATTCTAGCCCGGGAGTTATGCGAAACAGTTAG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TGGATGATGTCTGAGTCGGCCTCAGGAATGCTGATAGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCACGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TGTATGGGGCCCCCATTCTTACCAGTTACCTCTTGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATAAGTGTTACCCCTCTTAGCCGCGTGCCACTTCCATTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCTGTTGGAGCCGCCTGAGCGCCCCCGTGTATTCATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTGACCGTGTGGAACTTTCGTGGGCCGCCGTGCCGGA


>NZ_CP040098|23|23|2637624-2640680|CRISPRCasFinder
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TACTGCAAGTCGATTGAATCTTTCAAATCATCCAGCGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGACAAGCCCTCTTTGCTGCTGACCTGTGGGGATACTT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGCAAAATATTCGACTGCGCGGACAGCCTAAGCTCGGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TCTTGGTTAGTCGTACCATGTCGTGCGTCCTTGTTTTCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCGGTCTCGGTTCCGGCACCAGCCAAAGCAATGACGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TCGGCGCCACGCCATTTTTTCTCGGGGCCGTAAGGGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ACGTTTACAAGCGCTGAATATCCCCAGTTATCCTTCG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCAAACAACCAAATATTGAATCCAGTTGGGTGCATTA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CAGCTAACACGGAGATGTGGGACTGGTGTCCAGATGTC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGAACATGAGAACAAGATTCCGCCGGTTTTTCGTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GTTTGGACAAAGATGACAACTGCGGCGAAGACGGGATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGGCCACCTCGACCACCATATTCGAATCTGCTGATGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AACCACCTTGACGGCCTCGAGCCTGCCCAACTCCT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTCTGAGGGCCAAAAGCCAAAGTCGGAACCATCCCCG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGATTCTGCCATTGATCCCATTCGCAAATTGTTGGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGATATCCGACGGGTGCCGGCGTCGGATATCGGCATG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GATTCCGCGGGTACCAGGCAGTACTTCGTTCCGGCCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGCGTGAAACGGATGATCCAATCCAGGTAGTCCGATGGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTGGCTGCGTCCAATTCCAGCCCGGCTTTGTAGATTTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTAGAGATGGAGGGGTTGGGGTTGTTGCATAAGTTCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TATTTTTAATCATCTCGGCCCAGCTGTTCTCTATCGAGGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGAGTAGTTCCTTGGCCCGCTTCTCGTCGACGCGGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTCACACTCCGTCCTTCTACTTCGAGCAGATGCGCAAA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GTTGAATAGCCCCGGCGATCTCGCAGAGTAGTACCGTC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ACTTCGAGCCTGTGGCATAGTACCGATATTATAGATAT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGTCCTGACTCCATCGTCCCATTGTGTGTGGTCCAATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGAGTGTAACCCTCCTCCAATTTGCCTGCATATCCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGTGTGCGGTAGACGGTCCCAAACCGGAGTTCCCTGAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCCATGAATCGCTTAAACCCACAAAAGCCATTTTAT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCTGCCGGCGATCAATCTTGTGGCCAAGGGATTGACGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCTGCAAAGTTAAGCGTGAGGGTGGACGGCACTTTTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGCTATTCTAGCCCGGGAGTTATGCGAAACAGTTAG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TGGATGATGTCTGAGTCGGCCTCAGGAATGCTGATAGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TGTATGGGGCCCCCATTCTTACCAGTTACCTCTTGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATAAGTGTTACCCCTCTTAGCCGCGTGCCACTTCCATTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCTGTTGGAGCCGCCTGAGCGCCCCCGTGTATTCATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTGACCGTGTGGAACTTTCGTGGGCCGCCGTGCCGGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC

>NZ_CP040098|23|1|2637624-2640752|CRT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TACTGCAAGTCGATTGAATCTTTCAAATCATCCAGCGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGACAAGCCCTCTTTGCTGCTGACCTGTGGGGATACTT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGCAAAATATTCGACTGCGCGGACAGCCTAAGCTCGGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TCTTGGTTAGTCGTACCATGTCGTGCGTCCTTGTTTTCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCGGTCTCGGTTCCGGCACCAGCCAAAGCAATGACGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TCGGCGCCACGCCATTTTTTCTCGGGGCCGTAAGGGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ACGTTTACAAGCGCTGAATATCCCCAGTTATCCTTCG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCAAACAACCAAATATTGAATCCAGTTGGGTGCATTA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CAGCTAACACGGAGATGTGGGACTGGTGTCCAGATGTC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGAACATGAGAACAAGATTCCGCCGGTTTTTCGTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GTTTGGACAAAGATGACAACTGCGGCGAAGACGGGATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGGCCACCTCGACCACCATATTCGAATCTGCTGATGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AACCACCTTGACGGCCTCGAGCCTGCCCAACTCCT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTCTGAGGGCCAAAAGCCAAAGTCGGAACCATCCCCG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGATTCTGCCATTGATCCCATTCGCAAATTGTTGGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGATATCCGACGGGTGCCGGCGTCGGATATCGGCATG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GATTCCGCGGGTACCAGGCAGTACTTCGTTCCGGCCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGCGTGAAACGGATGATCCAATCCAGGTAGTCCGATGGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTGGCTGCGTCCAATTCCAGCCCGGCTTTGTAGATTTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTAGAGATGGAGGGGTTGGGGTTGTTGCATAAGTTCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TATTTTTAATCATCTCGGCCCAGCTGTTCTCTATCGAGGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGAGTAGTTCCTTGGCCCGCTTCTCGTCGACGCGGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTCACACTCCGTCCTTCTACTTCGAGCAGATGCGCAAA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GTTGAATAGCCCCGGCGATCTCGCAGAGTAGTACCGTC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ACTTCGAGCCTGTGGCATAGTACCGATATTATAGATAT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGTCCTGACTCCATCGTCCCATTGTGTGTGGTCCAATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGAGTGTAACCCTCCTCCAATTTGCCTGCATATCCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGTGTGCGGTAGACGGTCCCAAACCGGAGTTCCCTGAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCCATGAATCGCTTAAACCCACAAAAGCCATTTTAT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCTGCCGGCGATCAATCTTGTGGCCAAGGGATTGACGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCTGCAAAGTTAAGCGTGAGGGTGGACGGCACTTTTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGCTATTCTAGCCCGGGAGTTATGCGAAACAGTTAG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TGGATGATGTCTGAGTCGGCCTCAGGAATGCTGATAGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TGTATGGGGCCCCCATTCTTACCAGTTACCTCTTGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATAAGTGTTACCCCTCTTAGCCGCGTGCCACTTCCATTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCTGTTGGAGCCGCCTGAGCGCCCCCGTGTATTCATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTGACCGTGTGGAACTTTCGTGGGCCGCCGTGCCGGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GCGATTACAGCCGCTCTGTTCCGGCGCCTTATGGGT
GTAATCAAAGACGAATTCCCTGTGTCACCATCGGAA

>NZ_CP040098|23|2|2640351-2640680|PILER-CR
	TACTGCAAGTCGATTGAATCTTTCAAATCATCCAGCGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGACAAGCCCTCTTTGCTGCTGACCTGTGGGGATACTT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGCAAAATATTCGACTGCGCGGACAGCCTAAGCTCGGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TCTTGGTTAGTCGTACCATGTCGTGCGTCCTTGTTTTCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCGGTCTCGGTTCCGGCACCAGCCAAAGCAATGACGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TCGGCGCCACGCCATTTTTTCTCGGGGCCGTAAGGGC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ACGTTTACAAGCGCTGAATATCCCCAGTTATCCTTCG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCAAACAACCAAATATTGAATCCAGTTGGGTGCATTA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CAGCTAACACGGAGATGTGGGACTGGTGTCCAGATGTC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGAACATGAGAACAAGATTCCGCCGGTTTTTCGTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GTTTGGACAAAGATGACAACTGCGGCGAAGACGGGATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGGCCACCTCGACCACCATATTCGAATCTGCTGATGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AACCACCTTGACGGCCTCGAGCCTGCCCAACTCCT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTCTGAGGGCCAAAAGCCAAAGTCGGAACCATCCCCG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGATTCTGCCATTGATCCCATTCGCAAATTGTTGGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGATATCCGACGGGTGCCGGCGTCGGATATCGGCATG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GATTCCGCGGGTACCAGGCAGTACTTCGTTCCGGCCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGCGTGAAACGGATGATCCAATCCAGGTAGTCCGATGGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTGGCTGCGTCCAATTCCAGCCCGGCTTTGTAGATTTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TTAGAGATGGAGGGGTTGGGGTTGTTGCATAAGTTCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TATTTTTAATCATCTCGGCCCAGCTGTTCTCTATCGAGGT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGAGTAGTTCCTTGGCCCGCTTCTCGTCGACGCGGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTACAGGATTTCCCCATCATGGATAGTTTGCCCGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTTCACACTCCGTCCTTCTACTTCGAGCAGATGCGCAAA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GTTGAATAGCCCCGGCGATCTCGCAGAGTAGTACCGTC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ACTTCGAGCCTGTGGCATAGTACCGATATTATAGATAT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CGTCCTGACTCCATCGTCCCATTGTGTGTGGTCCAATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	AGAGTGTAACCCTCCTCCAATTTGCCTGCATATCCGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGTGTGCGGTAGACGGTCCCAAACCGGAGTTCCCTGAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCCATGAATCGCTTAAACCCACAAAAGCCATTTTAT
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCTGCCGGCGATCAATCTTGTGGCCAAGGGATTGACGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATCTGCAAAGTTAAGCGTGAGGGTGGACGGCACTTTTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	GGCTATTCTAGCCCGGGAGTTATGCGAAACAGTTAG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCAC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TGGATGATGTCTGAGTCGGCCTCAGGAATGCTGATAGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAACATGGTTATCTGGTACCCCAAGGGACCACGGCTGCATCACGTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	TGTATGGGGCCCCCATTCTTACCAGTTACCTCTTGG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATAAGTGTTACCCCTCTTAGCCGCGTGCCACTTCCATTG
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	CCTGTTGGAGCCGCCTGAGCGCCCCCGTGTATTCATC
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC	ATTGACCGTGTGGAACTTTCGTGGGCCGCCGTGCCGGA
GTAATCAAAGACGAATTCCCTGGAAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425106.1\|2647796_2648246_+\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NZ_CP040098.1\|WP_137425090.1\|2626236_2626797_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP040098.1\|WP_137425108.1\|2649142_2650468_+\|Tol-Pal-system-beta-propeller-repeat-protein-TolB	unknown	unknown	gnl\|CDD\|274305
NZ_CP040098.1\|WP_137425101.1\|2642022_2642853_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP040098.1\|WP_137425096.1\|2632697_2634530_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP040098.1\|WP_137425092.1\|2628149_2630159_+\|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	unknown
NZ_CP040098.1\|WP_137425100.1\|2640844_2642032_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP040098.1\|WP_137425093.1\|2630185_2631097_+\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NZ_CP040098.1\|WP_137425104.1\|2646180_2646936_+\|NAD-dependent-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_CP040098.1\|WP_137425105.1\|2646947_2647757_+\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP040098.1\|WP_137425094.1\|2631195_2631960_+\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_CP040098.1\|WP_137425091.1\|2627163_2628126_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP040098.1\|WP_137425822.1\|2642990_2643605_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425107.1\|2648242_2649112_+\|TonB-family-protein	unknown	unknown	gnl\|CDD\|372476
NZ_CP040098.1\|WP_137425099.1\|2637039_2637321_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP040098.1\|WP_137425095.1\|2631977_2632679_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180334.1\|2635393_2637043_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP040098.1\|WP_137425097.1\|2634531_2635377_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl\|CDD\|273848
NZ_CP040098.1\|WP_170180335.1\|2645107_2646091_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381615
NZ_CP040098.1\|WP_137425102.1\|2644449_2644866_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425090.1\|2626236_2626797_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	6.13995e-50
NZ_CP040098.1\|WP_137425108.1\|2649142_2650468_+\|Tol-Pal-system-beta-propeller-repeat-protein-TolB	gnl\|CDD\|274305	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	7.22965e-135
NZ_CP040098.1\|WP_137425101.1\|2642022_2642853_+\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	6.05516e-95
NZ_CP040098.1\|WP_137425096.1\|2632697_2634530_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.93208e-38
NZ_CP040098.1\|WP_137425100.1\|2640844_2642032_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.25418e-37
NZ_CP040098.1\|WP_137425102.1\|2644449_2644866_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.17523e-87
NZ_CP040098.1\|WP_137425106.1\|2647796_2648246_+\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.46893e-45
NZ_CP040098.1\|WP_137425091.1\|2627163_2628126_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	5.90083e-40
NZ_CP040098.1\|WP_137425107.1\|2648242_2649112_+\|TonB-family-protein	gnl\|CDD\|372476	pfam13103, TonB_2, TonB C terminal. This family contains TonB members that are not captured by pfam03544.	5.67108e-20
NZ_CP040098.1\|WP_137425099.1\|2637039_2637321_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.75453e-20
NZ_CP040098.1\|WP_137425104.1\|2646180_2646936_+\|NAD-dependent-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	7.67582e-101
NZ_CP040098.1\|WP_170180334.1\|2635393_2637043_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.52103e-105
NZ_CP040098.1\|WP_137425097.1\|2634531_2635377_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	5.07377e-15
NZ_CP040098.1\|WP_170180335.1\|2645107_2646091_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	5.59482e-62
NZ_CP040098.1\|WP_137425105.1\|2646947_2647757_+\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	3.67639e-79

>NZ_CP040098.1|WP_137425099.1|2637039_2637321_+|CRISPR-associated-endonuclease-Cas2
MKRNYLVGYDISDPKRLQKVAKVMKEYGSRVQYSFFHCSLSTAQKKRMMDRIRTFIREDEDQVLILPVTETQLKEMEFIGLKSRLDMEGVLIF
>NZ_CP040098.1|WP_170180334.1|2635393_2637043_+|CRISPR-associated-endonuclease-Cas1
MMLIPISYLNAYVYCPRRFYLECVRGMYEDNVYTLEGREMHRRVDDPGKQAVPLRKEDRIHRRSVWWSSERLGVTGRLDLLEEDGTGCLYPVEYKKGKAPKGRDPWLNDQIQLCAQALLMAENGLPLPPAGYLYFVGSRKRVEVRITEELCAQTREVIAACRALLDEDTLPPAVDNRNRCFGCSLLPLCLPEEEEVLAGHKTNARRILAQRLDQQSVYVDRLGARVSLSQGMLQVWAPGEERLGEASLEQLQELVLIGPVQVTTQVLHECCRREIPVHYLTLYGRYLGTTAPAFSRHSLLRRAQWQRHFDPERSNEIARDIVMSKLTSARTLAMRYLRDERSEEDVQAFRQIKDLIRRCRDCSDTEGLRGLEGMGTRHYFQCFPRFIKPRLRETFQFQGRVRRPPDNAVNALLSFGYAILAKDCMGAAARVGFDPYCGFYHVMKYGRPALALDIMEYFRQPIVDSAVLGAINNGVFTLRDFMAYQGTCYLSEKGRKKFLAQYEMRKKDHVSHPVFGYRLSYERMIELQLRILGKYLLGDLDKYVGFHIR
>NZ_CP040098.1|WP_137425097.1|2634531_2635377_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MPVAAVFRLKCLRAAKPPRAFRALFHPVFLERMRRTDDRLGRILHDAGRNAPYSLSPVWGTVDRNGRLLENGTYRVRLGLLEDALEDALHLSLERGVWREPIDLGGVPFVLEDLLLGESSEGGGCGRARYEDLWTAAEDAAAAVGRKGSLKVRVRFLSPMAFKRGDLHYPLPDVSLVTRHLTERWNAACPHAVPDPVGAAEISIARLKLETSRYALRNGGTVIGAFGSVTYVAQGARESLTALHALLHFAAFSGIGVKTTQGMGQCAVSDTQDRRPVPGTA
>NZ_CP040098.1|WP_137425096.1|2632697_2634530_+|CRISPR-associated-helicase-Cas3'
MPPCMDMERFYRQVAGFPPNPLQRAAWEAFWKTEHPAMLIRAGTGSGKTEAALLPPLAAGRRVLFVLPFKALLEDLSIRLARIGCRFSKAFERPLALTLDMGGSCRRIRCVDGTYNELTSHRHLFADDLIVTTLDKFLFRLFGYGEPVKSYIFCHRVFGSALGKHPFLIFDEAHDYDGLAFSNFSRLLRTLYEKGKDVCVMSATLPRETASFLDPVDAMEGDLATEQKRFETNVLGRTSQQLHLVRRSAPNTARGERAAFLDAMVEEIKRRIGPDRRLIVRTEWIGDLLDLRERLEDHDPLVYHGRLTMARRRKVIARLQQCQEKDAGFLLLATSAVEAGCDLDAHTIVTELCNPDSLVQLAGRCNRRGCMEDAELVVVGNGVKPQLRTLPQDRHEDYLNALEAMGATFDAAALRPFFHSPKGDWMGEILFDMLWDYVYDGDLSCKPLWDRGILVTRSWEPSVTLCTGLNPEELPENPVQVSLSRLASRVAPNEMEDRPAHEIFSVEKDGMWHADLYRVYFGREGHDVRRRTYSLQGRVGAYWTTLLCVIKEPFRDRYFDSCLGYTRLPTVLRRAWKVGFERTLVVKPGIKKDGRVDLNKWEALLWYLER
>NZ_CP040098.1|WP_137425095.1|2631977_2632679_+|hypothetical-protein
MAAWGRIFFIYSKQGATEGLQAVYGQPLENHVENCVSLFTHLQGELLSTDTRDKLETAVRLHDHGKRETFRLFKDSETKRWSYSFAGHRFRVPHKDPYVAALIRSHHEFSVDRIQRERALLRGAERDRFADDLYLLCMVDQLEAELAVKEVEGAKDVARTFMEFVTRRDERDGSYRVVPWPFTGDRLSLELHLHPLPLEVFNSLSKEEAVTRHIRNMESGTAETRHIMLTADN
>NZ_CP040098.1|WP_137425094.1|2631195_2631960_+|hypothetical-protein
MTYPFVPPTTLNGYLVRLLKIAEGARSGGHDADWPGYGEDWFAKGKDGKPAPGQAYILTLSPEYRPLGAFPPPGGWSIHKTRRQGPKNFAHVEFSQIIRSKGKIRQDFQLHHWEYLLCDELTGWVAASEPAPLERLRSLVNYGGKVGKEGFLVVKAVDKPQEAPRRSGTFEPVGLVPASVRPAGGTFFHLYGHRWSADYLWINGERGGVTGYVPIGVWWETGTLQGQHWSLGDGCGIPLEAPDLFLQGDREVFS
>NZ_CP040098.1|WP_137425093.1|2630185_2631097_+|hypothetical-protein
MAKAAENDGKNAKTLSGLPESQEPRRHYDIYAILEAPQELYFGDEKEVNVNIVEKVRVTTARGAVEKCTIAPSKRRGVERRCLLWSDAGGRLLMDKLQCGIPNTCCRDDCPVCAIFGGLIAGEKTFIGRLTHGGGVAVAPEIALEKQRAMHPALITKEKDNTPMPYRKEYAQPGLLYPISNHLLSVTEKEFGAAAYAFLLSLHRLGAGNPKGLGFARAAWNGHSEAVEPLLVVDSYRVPLGERPLVSPSITDNQEAVNRFVRLAETYKQDARDAFERRLGAQALAFLQSCASEFEKRVLRADS
>NZ_CP040098.1|WP_137425092.1|2628149_2630159_+|hypothetical-protein
MDLFPPSCFCLLDETEWEALVDSSSRDSYQPHLSRFLRATGQSRLLRRMALSASAKPFAFPHVEIDGHGWIVDKAGTCRGRLVRLSLPARSYEPQLALSYDWFWSEWCSFLCSATCWAQIRHGEVDLVLSRRHEAWDRIEEQGITRWLKERWEQCWQHLGSRAHLEQSLALYLEHKTLFKKQASPWGVKDIPVFSRDLAEFLVEYYKNGPHRLKLFKKVTLPAKTHELEELLDRGTFTSIPFPFNETEHTAVPPGDCFLGRSNPVACHSCGRAIARRESYPRLALFLKDADERPQSGKHKDEKPLFCPLCVAMVLVCPVKLTPETLTVRFLSSDEDSTVGTTATEELRKYVAQSLHVHAGNFVSLHVPERADGKFLAALWGAQAYSLWKMAVTFPPELFQRGFGVEVFPGEEQFRLPRWLLWFTSALAHWHHGFEYRCYAVNELRVPFAQFLRLAARGKVFHAFYTLMAGGVIQEDSRSWRWIALQDIWAQLETLMQEEDVMPLPDYPTIVGFAGLLLPLAERVEYRKRSNPKEAKRAIGKLLEEVDRPIQYAYTAAREAGDSTFIFCRRAQNRTFYDKAVELLDRAGEDVESLRREGRRIVEEREAFAWARDAEEQIFIGPDQVVRVTCYLVSEGEAPPYAAEADWRAFAYQVKLALWSMFPHYLGTE
>NZ_CP040098.1|WP_137425091.1|2627163_2628126_+|WYL-domain-containing-protein
MAISYQRRLQRLLEILVEVKSQPGQPLRGLIDKLGISKAQFYKDRKILAELGFSFHYDRCAGRFVVDGDAFLPVEDLSVSERILLVLAVRQLSSSGDFYIGYHALKAAKKLIAGLDGDSARFASAVFDDLVLREGFGCRPDIVERLQEAVAQRRRIRIDYLKPGAFKPACYELDPYSFFFRRRALYVEGHCPTRKALRTFRVNRIQRVASTGIFFQPREDYDFGRRSRSAFSVFTSENTQAVRVRFSSRARPYIEEILWHPSQQLQAGKDDSLIFTADVANPREVLWWAMSWGGDAEILEPDWLRREAARESRKMAELYR
>NZ_CP040098.1|WP_137425090.1|2626236_2626797_-|NUDIX-hydrolase
MAIQPWPLLSGDTRRSFGIFNVRSDKVRSPRTGCVHDFWVIEFPPWVNVIPLTPEGEVVMIRQYRHGIRSITLEIPGGVVEEGDSLQQAAIRELMEETGYRSNEWTFLGTTHPNPAIQNNECATFLANNVVLDGPPQPDDTEDIEVVRIPLVEVPRMLRTGAISHSIMVAAFCRFFLEYGLPGTAP
>NZ_CP040098.1|WP_137425100.1|2640844_2642032_+|IS21-family-transposase
MLKKEDCMEIRAQVEKGVYKKDIAESLGVHPKTISRALSRGGVPSGKRPGARVSKLDPFKPLIDQLLRDGVWNAMVILREIEQRGYTGGTTILREYISPRRPMRQSRATVRFETDPGVQMQNDWGELTTEVAEIPQKVYFSVNTLGFSRRLFFWCAPRNDAEHTYEGIIRAFEYFGGVVIEVLVDNQKATVIVHRIGESVRFNERFIDLAGHYGFTPRACRPRRARTKGKDERMVGYIKHNFFVRYRKFESFAQMNALAEKWLREETDQRLHGTVKEIVAERFSREAPHLRPLPALRYDTSYLEHRCVHWDGFIDVLGNRYSVPSQLCGQTVRVRIGLDGTLRVYAEETLVAEHTLRSAAEGWGSVAAHHAQLWQEALQVERRDLSIYEEASRWS
>NZ_CP040098.1|WP_137425101.1|2642022_2642853_+|ATP-binding-protein
MELAGLLEKMKMEHLLSQIDSVCEQASKRDLSYKDFLAEALQAEWRGRHGKAVEARLKMARFPWVKTLEQFDFSFQPSIDRKVIRELSGLSFVDRAENVILLGPPGVGKTHLSISLGVKAVEAGYRVLFLTLESMLTRLTRARMENRVERQLQQFVYPRVLIIDEMGYLPMSRDEAGLFFRLLTRRYEKASLIITSNKSFVDWGEIFNDQVLATAILDRLLHHCTTLNIKGDSFRLKEKRKAGLVGAGPAIPGADGLWAKSGRERRVFECSAGRLG
>NZ_CP040098.1|WP_137425822.1|2642990_2643605_-|hypothetical-protein
MLGVKPGDHAFLFKKADEAIAEGRAVEFWHAAEDNPETLHYFRFVNDLPLNKSHPDLRVNLLEYWQVTPKGLVRFSWVTDILIRRENAVTLMRIGRARRRIENETFNTLKNQGYHLEHNYGLGRKHLSAVFVTLMMLAFCVDQSLQLCCPLFQAVWRKLQTKRDLWERIRAMFWDFRLESIRMLYEALLYGYKRLTPIIAYNTS
>NZ_CP040098.1|WP_137425102.1|2644449_2644866_+|nucleoside-diphosphate-kinase
MERTLSIIKPDGVRQGVIGEVIRRFESAGIRIAAMKMLQLTQAEAEGFYAVHRERPFFESLTRFMSSGPIVVMVLEGDGVIARNREIMGATNPKDAAPGTIRKDFASSVEQNVVHGSDAPETARTEIAYFFSEMEICA
>NZ_CP040098.1|WP_170180335.1|2645107_2646091_+|transglycosylase-SLT-domain-containing-protein
MWVPFIPTPTEMDLCGEAVPLGDEEVWERFDREFTIVVYSHAQVYLWLKRAERFFPWFEDELERRGLPRDLKYVAVAESDLQHTAASPMGAVGIWQFIPATGNRYGLNAKGVIDERYDFEKATGSALNYLKDLHDMFGNWALAIAAYNCGEGRVRQELAQQKVRDYYSLKLPLETERYVFRILAIKAVLSDPARYGYALPAGAGYKMPDVETVSVRFPATVPIQAVADLAGITYREFKRLNPSFRSSDIPSGTYLLRFPKGRGDRVAEGAEALAERFKPRAVVHTVRSGDTLSGIARRYGVTTDEIKRWNGLRSNIIRTGQRLQIQR
>NZ_CP040098.1|WP_137425104.1|2646180_2646936_+|NAD-dependent-deacylase
MDCLKEVAERLSRSRNAVALTGAGISVESGIPDFRSPGGLWSRYDPLEYGHIASFRRNPGKVWRMILEMYRLVDAARPNPAHHALAQLEKRGILKAVVTQNVDSLHQMAGSERVIEFHGHGRTLRCETCGARYPRERASFDVMPPECGCGGVLRPDFVFFGEGIPPKAHHEAVAVTERADVFLVIGTSAAVAPASYLPMLAKSSGAYLVEINPEPTDLTCRLTDCHIAERAGVALPAVLEAMGIYAESRTL
>NZ_CP040098.1|WP_137425105.1|2646947_2647757_+|protein-TolQ
MLWLHLFKSTLQTATAVAAPYERIGNGVGDMIWHAGPVVKFVMLLLFAMSLACWCVIFMKLRYLQKVRRETDRFLDLYEQRKNFSAVYRETQTMEYSPMAQIFRRGYMEWMRSAKMLGSQNVAEGPLAGGVLFESVERAVDGVLLEERQRMERFVPFLATTGSSAPFIGLFGTVWGIMTSFQDIGLKGAANLAVVAPGISEALVATAMGLVAAIPAVIAYNHFVNRFRVLENEMQHFASDFLNLMKREWYRRAAPARAEGETARAVHEN
>NZ_CP040098.1|WP_137425106.1|2647796_2648246_+|protein-TolR
MQKPNDNRAMLSEINVTPFVDVMLVLLIIFMVTAPMMMQGLDVNLPQVEAPAIPAEEERLVVSIDGERKVFINEYAVDLESLGPKLAAIYQNRGDRQGVFLRADASVPYGFVMEVMGRIREAGIDQIGMVTAPVTERGPAEAKAERSGG
>NZ_CP040098.1|WP_137425107.1|2648242_2649112_+|TonB-family-protein
MIFAGVMGKNYPKDDLLLGLAGSIAAHAILLFAALLLPSLVQSRPVRLSYTTVKLVDPGDLAPGREGAQKAGPAVRSRETAKKTARRIAPPPIVPVRRLRMQEPLPETGLRKIEPQEVPDVPKAEGPPVEKTVEQLMPQVSREPASKTAAAAGPSRDEDKSALERSGGLGERAADGGLSGPPGADASESDAIGLARRLYYAEVWNAIRRQWALPKTLVNAKDLEAVLVIVVRRDGRILDIQFEKRSGNSLFDDSVVRAVQKANPLPRFPDIYSPPREEIGVRFRPQDIL
>NZ_CP040098.1|WP_137425108.1|2649142_2650468_+|Tol-Pal-system-beta-propeller-repeat-protein-TolB
MKERRWFVTVMAVLLNGLLALGGSGEAAERVYIDITQPSFERLPIAVPSFKWDNQEASSVSTESAEALSRALDFSGLFRPLDPRGFLDDPQQMGIALEEIQFPMWRRLGAEFLVRGRCRVTGDGIEMEMRLFDVVASRQVVGKIYEGRREDWREMVYRFADEILLALTGERGVFGTKIAYVQIEGQSKEIYLVDFDGSSPIAVTRDNSVNLSPAWSPDGSQLAYVSYVEGPPKVFAVNLGTGTRRLLFGFPGLNITPAWRPGTRELAATLSKDGNPDIFLVSDSGEVLRPLVKTWAIEVSPSWSPQGDRFAYVSNETGNPQIYVAEADGGRGRRITFEGTYNTSPSWSPKGDWIAYSSLRDGRHDIFVIRPDGSESRRLTHGEGDNEAPSWSPDGRMLAFSSTRDGGAPAVWVMLANGESVRRLTRGGGGQELPRWSPRFD

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Crispr_ID: NZ_CP040098_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_24

2799893-2800086

Orphan

Consensus_repeat	Method
CGTTCCCAAGCTCCAGCTTGGGAACGCCCTGCCCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040098_24

>merge|NZ_CP040098|24|2799893-2800086|CRISPRCasFinder
CGTTCCCAAGCTCCAGCTTGGGAACGCCCTGCCCGGGAAGCTCCAGCTTCCCTCCTGCTACAGTTGAAACGCGCTGTCTTTCCCCTCGTTCCCAAGCTCCAGCTTGGGAACGCCCTGCCCGGTATGACGCAATCAAACAGGCGGCGTCAAGCTGCCGCCGTTCCCAAGCTCCAGCTTGGGAACGCCCTGCCCGG

>NZ_CP040098|24|24|2799893-2800086|CRISPRCasFinder
CGTTCCCAAGCTCCAGCTTGGGAACGCCCTGCCCGG	GAAGCTCCAGCTTCCCTCCTGCTACAGTTGAAACGCGCTGTCTTTCCCCT
CGTTCCCAAGCTCCAGCTTGGGAACGCCCTGCCCGG	TATGACGCAATCAAACAGGCGGCGTCAAGCTGCCGC
CGTTCCCAAGCTCCAGCTTGGGAACGCCCTGCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425233.1\|2799216_2799507_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NZ_CP040098.1\|WP_137425232.1\|2798738_2799197_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425237.1\|2805064_2805619_-\|NADH-quinone-oxidoreductase-subunit-NuoE	unknown	unknown	gnl\|CDD\|376507
NZ_CP040098.1\|WP_170180351.1\|2807086_2807767_-\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153245
NZ_CP040098.1\|WP_170180348.1\|2800182_2800461_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224657
NZ_CP040098.1\|WP_170180352.1\|2808635_2809943_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235521
NZ_CP040098.1\|WP_170180426.1\|2810243_2810486_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|379029
NZ_CP040098.1\|WP_137425231.1\|2798500_2798722_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP040098.1\|WP_137425228.1\|2790473_2791868_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP040098.1\|WP_137425840.1\|2803134_2804979_-\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|224806
NZ_CP040098.1\|WP_170180347.1\|2794085_2797919_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|237425
NZ_CP040098.1\|WP_170180350.1\|2805900_2806812_+\|DUF2156-domain-containing-protein	unknown	unknown	gnl\|CDD\|227203
NZ_CP040098.1\|WP_137425225.1\|2788056_2788671_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|372434
NZ_CP040098.1\|WP_137425229.1\|2791864_2793646_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NZ_CP040098.1\|WP_137425226.1\|2788646_2789177_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223976
NZ_CP040098.1\|WP_137425236.1\|2802425_2803073_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|223965
NZ_CP040098.1\|WP_137425240.1\|2807942_2808587_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|238260
NZ_CP040098.1\|WP_170180346.1\|2789420_2790305_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP040098.1\|WP_137425224.1\|2787684_2788050_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180349.1\|2800617_2802123_+\|response-regulator	unknown	unknown	gnl\|CDD\|236901

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425233.1\|2799216_2799507_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	8.89004e-23
NZ_CP040098.1\|WP_137425237.1\|2805064_2805619_-\|NADH-quinone-oxidoreductase-subunit-NuoE	gnl\|CDD\|376507	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin.	1.69045e-66
NZ_CP040098.1\|WP_170180351.1\|2807086_2807767_-\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|153245	cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.	5.71387e-76
NZ_CP040098.1\|WP_170180348.1\|2800182_2800461_+\|hypothetical-protein	gnl\|CDD\|224657	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair].	0.000493837
NZ_CP040098.1\|WP_170180352.1\|2808635_2809943_+\|hypothetical-protein	gnl\|CDD\|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	3.43544e-12
NZ_CP040098.1\|WP_137425231.1\|2798500_2798722_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	3.06267e-18
NZ_CP040098.1\|WP_170180346.1\|2789420_2790305_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.11785e-19
NZ_CP040098.1\|WP_137425236.1\|2802425_2803073_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|223965	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion].	1.19618e-45
NZ_CP040098.1\|WP_170180350.1\|2805900_2806812_+\|DUF2156-domain-containing-protein	gnl\|CDD\|227203	COG4866, COG4866, Uncharacterized conserved protein [Function unknown].	2.45652e-61
NZ_CP040098.1\|WP_170180426.1\|2810243_2810486_-\|KH-domain-containing-protein	gnl\|CDD\|379029	pfam13083, KH_4, KH domain.	1.89748e-17
NZ_CP040098.1\|WP_137425229.1\|2791864_2793646_-\|histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.63049e-97
NZ_CP040098.1\|WP_137425226.1\|2788646_2789177_-\|hypothetical-protein	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	6.12445e-27
NZ_CP040098.1\|WP_137425840.1\|2803134_2804979_-\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NZ_CP040098.1\|WP_137425240.1\|2807942_2808587_+\|shikimate-kinase	gnl\|CDD\|238260	cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.	3.50434e-50
NZ_CP040098.1\|WP_137425228.1\|2790473_2791868_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP040098.1\|WP_170180347.1\|2794085_2797919_+\|HDOD-domain-containing-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	5.60278e-68
NZ_CP040098.1\|WP_137425225.1\|2788056_2788671_-\|HD-domain-containing-protein	gnl\|CDD\|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	6.44872e-31
NZ_CP040098.1\|WP_170180349.1\|2800617_2802123_+\|response-regulator	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.15661e-35

>NZ_CP040098.1|WP_137425233.1|2799216_2799507_+|nucleotidyltransferase-family-protein
MVKSDEILDFLKQHKKDLEIRFSVRRIGLFGSVLRGSARDKSDVDILVELAHPTFDQYMDLKFFLEDHLGRTVDLVLADSVKPRLKPIINREVAYA
>NZ_CP040098.1|WP_137425232.1|2798738_2799197_+|hypothetical-protein
MMLNLKLRDEFLGSQMQGTAIALRRKDNTGAAQRTPDFILSITYPAADVQTALRAVSTDRSKRPIVLMGDRGRGKSHIMAVMHHAVESSTQVQKRANEWGNRLGAQPLSGLVLDGGFFAISEPVQGGFPHVCHGGLSLLEVAVPFIELPPSL
>NZ_CP040098.1|WP_137425231.1|2798500_2798722_+|helix-turn-helix-domain-containing-protein
MTQIEDRWLSVEEISKYLGISNDTVYRWIHKHRMPSHRMGRLWKFRKEEVDEWVKTGGAGDNEQGRTPDGRKR
>NZ_CP040098.1|WP_170180347.1|2794085_2797919_+|HDOD-domain-containing-protein
MDASDLPPTPPNGPNGNPLTREEIKRVVRRLETLPALPAVAARLLNLLTAEDADPEEVVELLETDQAIVMRLLKLVNSSHHGLRSRVTTLSRAVMLLGLPQLRCALLSVTISESLIKELRKRSTEDQLALWKHALTCAVCAELAAEKVRPELKGEAFVAGLLHDVGKLILKECLPDDYRRAEKTASERGIPMVTAEQELLGLDHPTVGKWLAERWHLPAKLVQPIWLHHHSLDVLNVLEFDEPVHRTLALLIRLADHLAHEIAVDYGRPSQLGTLDPGLPEALNLETGQLDAIRAEVGKRYSQRTALLDLEEDEVSFYFSALQRANRTLADIAWQTCRLEELDRSFRDVLKLNELQISLARLEDQEDVLETVVRELLLEQGGPEGILTLVSERGDHLVGRYWAAPRLQKTFLMRLWDGKRPDTRALGKLNPELAEFLERLPDRFPRPADLNPLETLVQYRKPYLVLPLVVEGAFAGEIVLKEGGSLTAAAGDAERSILRYLASILSAAVSRCRLLEGQRRDGERLGLALSRAGRTMKELAETKRLLDTLFEHCNDAVVLHDLKGRILRANARAAALTGLEGEMLVGAKVYDLLEGDSAELKAELEGYAEAEGEMRREARLLTGGGESIEVEVCSRFVDRKRELVLTLLRDLRPSKSTAKALLEERDRLSVMLRSIAEGVIATDREGNVLLVNSEAERLTGWRERDILGKPARVALNLVDANTRRPVESPLVRVIENGCALEWPTDLLLLDKEGGMRPVALSAAPIRDQEGRTTGVIVALRDLSLLRRMEQEILKSQKLESVGVLAGGIAHDFNNILMSILGNVNLAKMYADRPDKLHERLDEAELAVHRAKDLTRQLFTVSKGGAPIKQTAAIAEIVQESCGLALRGSNVVCEFDFPEDLWAVDVDPGQMNQVICNLIINAKQAMPQGGTVRIRGENVFVSSKDGLPLAAGKYLHLSVSDEGVGIPDHILPKIFDPYFTTKERGAEKGTGLGLAIVDSIIRSHGGHITVESSLGAGTTFHIYLPGSERKPPRTVKEKECGEVMRGRGRILVMDDEEPVRTITRDMLSTLGYDVAAAASGEEAIEMYRAAMESGEPFAAVLLDLTVRGGLGAKGTIKRLRELDPEVLAIVSSGYATDEIIRHYRDHGFSAMITKPYTIRKLSETLRLVLAGSERRTAQRKDVRCSVTIGGRDRSVPGEVRNVSAKGAMVVAAEGMDPEEDVRMTIESEESPAVSVSGKVVWSRKNAEDTSNGPHCVGVRFENLSEEARDMLLRLVSRH
>NZ_CP040098.1|WP_137425229.1|2791864_2793646_-|histidine-kinase
MKTKISGPDRWTWFSPWVIIGSVCILAAVLAVLAVKNIRREQDFMERALRYQADILMEFLEAGSRTGMRGPGGGGRRHIQTLMEETAQQPEVLYITLVDGDGRIVASSDPQRIGGTHRLPHVAADGSLHRFIDTPQQAFEVIRAFRPWSGCNPRHRNICMERTAALGDNLLLIVGMDPSPFEAAMRQDRHQTILLFGVMFLAGAAGFVSLFWAQHYRSARRSLLDMERLSATVFNQMPAGLITTDLRGTVRQTNTAARDILKLPGGIPGRLDELACFAAVRRQLERGAAVLEEEVTCCAGGDTVIPLLVNASVIHDGEGRKAGYVFLFTDMTGIKQLEEQLRRSERLAALGRLSAGIAHEIRNPLSSIKGFAAILAKKVQGDENARALSKVMEDEVNRLNRVVTELLEFARPTELQKRRTAVKEVIEHSLRLVESDAQAAGIRLSVDVRPQELRAEFDPDRFSQVLLNLYLNAIQAMDRGGRLSVEAERHEDEWVLQVEDTGCGIEPAELPHIFDPYFTTKPRGVGLGLAVVHKIVEAHNGEIDVESSPGQGTRFIIRLPLGGAAACPSPEERRAAPSSGKTQATLTASEESS
>NZ_CP040098.1|WP_137425228.1|2790473_2791868_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MTRSDSRSLILVVDDDPAHRLMLKNLLEDWGYRIEEAEDGDDAVAFIQRGPADLVLMDVRMPRMNGIEATQAILSYNPAVPVLIMTAYSSIPSAVEALKAGAYDYLTKPLDFDALRLTIERALEHTHLRRENEELRGQLARLQLPEMVGRSPAMQQMAEMIALVAPSEATVLLTGESGTGKSLVARAIHANSPRSSRPLVEVNCAAIPESLMESELFGHEKGAFTGADKARRGRFSQADGGTIFLDEVGELSPPMQAKLLRVLQEGDIQRVGSDAPVRVDVRVIAATNRDLQNMVAQETFREDLFYRLNVVTLEVPPLRDRVEDIPVLAEHFLARFAEKNRKRVKGITPGAMDLLLKHPWPGNVRELENVMERGVILLQGDYISEKELPLALQKLAPQPPPETAADSSPQRDLTDLTLAEMERRAIFQTLEETGGNKSEAARRLGITRRTLKLKLKKYQEESNT
>NZ_CP040098.1|WP_170180346.1|2789420_2790305_+|flavodoxin-family-protein
MKTLLGIVASPRKYGNCELFLKELYLNLPQDAWSLRLIRLSELNIQPCLGCYQCLFGEMKCVQRDDLQLFLDALVSADAVAVAVPTYFLGANASLKRLLDRGLSFYAHLNTLWGKPAVGAAIAGVPGLEGYTKLIVDSFLKLTLTDHRGSEVVYGALPGEIFLDGVAKAAAARLAEALCGGGSEEAGSAPRCPVCGGDTFRFLPETSPRPDGAVAVRCMLCSSAGTLKAADGRIQISTRPSEHPLFLTREDAERHLEWLRGMKEAFFVRHKELKAVVQAYTAIGEWIRPENRTR
>NZ_CP040098.1|WP_137425226.1|2788646_2789177_-|hypothetical-protein
MRAQRHCVVTFQYWIEPVDPEPFPYPRGPYRMEALLGEGRLPPSLEQLLLGMEAGERTDVTLEPGAMFGPLRDDAVTEVPRSDVVEEGDRLQVGAVCHLMDEKRRLRPFRVRALGPNTVLADFNHPLAGRRLRLRVTMESVRWAALEEIKQARLRDAHCHDAASRDKASWIETSNS
>NZ_CP040098.1|WP_137425225.1|2788056_2788671_-|HD-domain-containing-protein
MDRNIELVKEEPTPERKERRALANFFFELGMLKRTPRSGFQFLGTGRESVAEHSFRTAVIGYTLARLSDHSDPFRVVCLCLFHDVPEARTGDMNYVNKQYVTVDEAKAVRDLAETLPFGDAFLEFIEEYRACRTEAAVLAHEADQLDLILELKHQKDLGNAYAERWIHFALKRLKTPLGHRLADEILVTDSAGWWFDGNDHWWA
>NZ_CP040098.1|WP_137425224.1|2787684_2788050_+|hypothetical-protein
MATEIGDLVLVHIENQPAFFARIEDITADPKPDWWQVKLLVLQVPLVVVTWILREAYINGEPFTMGGHPMQMVKVEAPQEGPEKQKEEQPAGEGVQSHGSGDREAAKAGKVVSFADRLKKR
>NZ_CP040098.1|WP_170180348.1|2800182_2800461_+|hypothetical-protein
MGGGTTLVEGARLGFQMTGVDLNPVAWFVTKNEPACSDPAQVKAVFEDIEAKVKPLVQPFYTTTCPRGHTGRCVDRERRPPSPCRPFPAVPF
>NZ_CP040098.1|WP_170180349.1|2800617_2802123_+|response-regulator
MIGKDVTASERVLVVDDDVSLCRLVCEALKQEGCDPLCCTSSEDVLEISRRNPFDLAFVDVQIFGISGLQLAEALKRQNPWREIVVMADHGTLDNAVQAVKLGGSDFLKKPFSLDEFLFCLSRHRERMAFREKLRRAEQRYTDLVQNIPMMIFVLLEDHRLEFVNRMSRTILGYAPDEIVGVPDWLLQRAYAEDRDLLAERLRQAFSAGGRPLFLECRFLHREGHLVYLLLKSIPQSPGSQAPRPPRLMGIAADITDRIFLERALVQREKVKTLGNIAAEVAHEIRNPLVSIGGFARRLQKQFPDTPEAGIVLKECRRLEKILDRIRNYLRPVELRFQDYSVEHVLSHCESLLSPEIERKQVECRREVDPSLPDLYVDPDLLLQVFINLTRNALEAMGKGDVLHVRAYSSDRQIHVQFRNPCRKGRSINSEKLFLPFDEGGQSIGLPLCYRLVKSMGGILSFAQEGEQALFTVSLPTEVDEEREVRGLRRMPLAETVSGDH
>NZ_CP040098.1|WP_137425236.1|2802425_2803073_-|(2Fe-2S)-binding-protein
MIRITVDGKEIQTEQGKTILQACLENGIYIPNLCFLETREQPRASCRLCFVETSDAERPVTACTETVRDGLDVRTNTEAVRRLQRTAFKLIMSAHHCTPKTCPVAKPCQLMRIARHIQVGLNPRPLETLERDVQEEVDLTFFTYYPFRCVMCGKCVDVCRDRNERNPLTFAKRGFDTVVTFFGSGASNLPCDDCGACVAVCPTGALIPKPPPSES
>NZ_CP040098.1|WP_137425840.1|2803134_2804979_-|NADH-quinone-oxidoreductase-subunit-NuoF
MSTCALASGAAETRDAIKETLERIKVPARIVPVGCMGHCYAEPLVVIDHPASGFPPICYHRIDAGIARVVIRSFFEDGDPSFEYVLGALEENDLVPPVTQFPRFNLEERVVMELCGRIDPGDIQEYIARGGYAALARALDGEPESVIDTIERSGLRGRGGAGFPTGRKWRLARSARSERKVVICNADEGDPGAYMDRTILESNPHQVLEGLAIAAYAVGADEALVYVRAEYPLAVKTVQKAVRDAEACSLLGRGVLGTAFDLKVSVFQGSGAFVCGEETALIQSVEGRRGMPRHRPPYPVEKGLWGRPTVVNNVKTLASVPPIVSKGADWFRTIGTENSPGTAIFSVVGNVKHPGLVEVPMGTSLRKLIFDVCGGIPGKKAFKAVQIGGPSGGCLPERFLDTPIDFDSLAQAGAMMGSGGMVVMDQDSCMVDVARYFVDFTQKESCGKCTFCRIGTRHLLVMLDRITKGEGREEDLEIMETLSHDIKAGSLCGLGKTAPNPVITSLRYFREEYEAHIRERRCPALKCRALVAFYIDLERCARGCDACVGCCPVEAIFTTKGRKKAIDQQRCVKCGECMVACPPEYNAVFKVSPPERAPVIERPPENGPAPAGNP
>NZ_CP040098.1|WP_137425237.1|2805064_2805619_-|NADH-quinone-oxidoreductase-subunit-NuoE
MNSVPTQTETEEREMIEAIEAMLPRFAKHRSALIPILQAVQQEHGYLSGGAMERVAEYLEISPSEVYGVATFYNQFRFHPPGRHQIKVCLGTACHVAGGDIILENFERKLGIRAGETTPDREYSVERVACVGCCALAPVAIVDGTVLGHMQPSRVEGLFVQFQVEREREEREKAEREPGGEQDA
>NZ_CP040098.1|WP_170180350.1|2805900_2806812_+|DUF2156-domain-containing-protein
MKIPPRFPEFKTIETEDRPWIQEVLDAYRPETSEWTFTNLFIWRSHYNFRWSWMENLLVVVGDSDEGGRFALQPMGPGRRGDATGEILDWMAREWGVSDPRIQRADRRLADELEGDGRFIVEPTREHFDYVYRTRDLVELAGRKYHGKRNHVNRFRSTYRFEYAPLGEVHRRACLELADSWCRWRRCEEDLNLLGELEAIREVLTHLDRLPVEGGVILVDGMVEAFALGELLNEETVVVHVEKGNPELPGIYAVINQQFCEHRWSGVPWVNREQDLGEPGLRKAKLSYHPDHLVEKYQIRRAD
>NZ_CP040098.1|WP_170180351.1|2807086_2807767_-|lysophospholipid-acyltransferase-family-protein
MTFRKRPPTDALLLAVIPPLAAGLLRLLHRTCRFITLGDTTWRTASASDRPMLFATWHYAFPAVIYYFRNRQGVLMVSRSRDGEWAARVVHALGYQTVRGSSHRGGSRALREMLKSVEEGYDAGLIADGSQGPPQVAQKGILLVARSSGAPLVPFSMAADRYWRLNSWDRTVIAKPFSRIAFAFGPPIHVARRDRDLDRLRTHLQEELDRLTRLAWHYFDGTANGT
>NZ_CP040098.1|WP_137425240.1|2807942_2808587_+|shikimate-kinase
MAGIETLRDSGKGGHPRPRVALIGFRATGKSTVGRLVAASLGRVFVDMDEELVRRFGMDIRRWVDRHGWPAFRVEEAALLRSLSCAVPSVIATGGGVVVDPGNRWVLRRRFFTVWLKASPPVVLMRLHQDPRTASLRPALTDHGFEGEVRLLLREREPWYRESSHAAVGTDGEAPERIAGKVLQAVAGPTGNPLCGIPGRPRLPDFFDSGVQRW
>NZ_CP040098.1|WP_170180352.1|2808635_2809943_+|hypothetical-protein
MADPNVKAVSTGPQNPFQPVMDLLRGVDRNVVCGKYGLSAAQLEKLFADYQASRRQVALADHLILERVGRNDPCPCGSGKKYKKCCMAIHEEARKSLPKDELLSMEERARRREKLQKDVQKGFDLLVSQEYSKALRLAERFLEEFPEDDRLHDIVTTVHLATGNYDEAFHRARKRWQIAREEKDFFQEHGYHQREGIDRKQIVHFYSPATWLEKFWIAQRARAYRERYPKGDDPRLRALVNKLKVVNDPSRFQARQEEGLAVRREAVRPVLEELEAAGEGAIAYLLPLTYTFSWASLFVPDLLKKIATEDAVGLLAELSMFRFPYFAQRCLSHLEALGEKAFPRIAETMRDHRAFDELKAGLILVLGKIQTQESFQLLAELTEHESPYVVNWAAQALAGHKNPEALPVLERARARLGALSKIEGAIKELAAMKEA
>NZ_CP040098.1|WP_170180426.1|2810243_2810486_-|KH-domain-containing-protein
MVDDPKNVKVSVLEGERTTVVELKVAKNDPGKIIGRGGATAAALRTILTAASTKLRKRAILAIVEGCGSFRTTSSVDPLR

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Crispr_ID: NZ_CP040098_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_25

2812613-2812742

Orphan

Consensus_repeat	Method
TCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_25

>merge|NZ_CP040098|25|2812613-2812742|CRISPRCasFinder
TCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGGAATGTAACTGATTGACATACATTAATTTTATCACCCTCACCCCAACCCCTCCCCCTACTCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGG

>NZ_CP040098|25|25|2812613-2812742|CRISPRCasFinder
TCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGG	AATGTAACTGATTGACATACATTAATTTTATCACCCTCACCCCAACCCCTCCCCCTAC
TCCCCTCCCCTTGTGGGAGGGGATTAAGGGGAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425241.1\|2810578_2811241_-\|MEDS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379605
NZ_CP040098.1\|WP_137425253.1\|2822080_2823049_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP040098.1\|WP_137425237.1\|2805064_2805619_-\|NADH-quinone-oxidoreductase-subunit-NuoE	unknown	unknown	gnl\|CDD\|376507
NZ_CP040098.1\|WP_137425250.1\|2818253_2819324_+\|Tad-domain-containing-protein	unknown	unknown	gnl\|CDD\|379164
NZ_CP040098.1\|WP_170180351.1\|2807086_2807767_-\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153245
NZ_CP040098.1\|WP_137425252.1\|2820691_2822059_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP040098.1\|WP_170180352.1\|2808635_2809943_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235521
NZ_CP040098.1\|WP_137425246.1\|2815300_2816110_+\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
NZ_CP040098.1\|WP_170180350.1\|2805900_2806812_+\|DUF2156-domain-containing-protein	unknown	unknown	gnl\|CDD\|227203
NZ_CP040098.1\|WP_137425840.1\|2803134_2804979_-\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|224806
NZ_CP040098.1\|WP_137425251.1\|2819525_2820689_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349765
NZ_CP040098.1\|WP_170180355.1\|2817843_2818254_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP040098.1\|WP_170180354.1\|2816277_2817558_+\|type-II-and-III-secretion-system-protein-family-protein	unknown	unknown	gnl\|CDD\|227299
NZ_CP040098.1\|WP_137425248.1\|2817571_2817841_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425243.1\|2811768_2812317_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379177
NZ_CP040098.1\|WP_137425240.1\|2807942_2808587_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|238260
NZ_CP040098.1\|WP_137425245.1\|2814356_2814872_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|227295
NZ_CP040098.1\|WP_170180353.1\|2811262_2811826_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|272971
NZ_CP040098.1\|WP_170180426.1\|2810243_2810486_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|379029
NZ_CP040098.1\|WP_137425244.1\|2814053_2814233_+\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425241.1\|2810578_2811241_-\|MEDS-domain-containing-protein	gnl\|CDD\|379605	pfam14417, MEDS, MEDS: MEthanogen/methylotroph, DcmR Sensory domain. MEDS is prototyped by DcmR and is likely to function with the PocR domain in certain organisms in sensing hydrocarbon derivatives. The MEDS domain occurs fused to Histidine Kinase and as stand-alone version. Sequence analysis shows that it is a catalytically inactive version of the P-loop NTPase domain of the RecA superfamily.	1.29103e-34
NZ_CP040098.1\|WP_137425253.1\|2822080_2823049_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.51818e-58
NZ_CP040098.1\|WP_137425237.1\|2805064_2805619_-\|NADH-quinone-oxidoreductase-subunit-NuoE	gnl\|CDD\|376507	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin.	1.69045e-66
NZ_CP040098.1\|WP_137425250.1\|2818253_2819324_+\|Tad-domain-containing-protein	gnl\|CDD\|379164	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like. This is an N-terminal domain on a family of putative Flp pilus-assembly proteins. The exact function is not known. The Flp-pilus biogenesis genes include the Tad genes, and some members of this family are putatively assigned as being TadG.	2.64885e-10
NZ_CP040098.1\|WP_170180351.1\|2807086_2807767_-\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|153245	cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.	5.71387e-76
NZ_CP040098.1\|WP_137425252.1\|2820691_2822059_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	8.35663e-158
NZ_CP040098.1\|WP_170180352.1\|2808635_2809943_+\|hypothetical-protein	gnl\|CDD\|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	3.43544e-12
NZ_CP040098.1\|WP_137425246.1\|2815300_2816110_+\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	2.12786e-65
NZ_CP040098.1\|WP_170180350.1\|2805900_2806812_+\|DUF2156-domain-containing-protein	gnl\|CDD\|227203	COG4866, COG4866, Uncharacterized conserved protein [Function unknown].	2.45652e-61
NZ_CP040098.1\|WP_137425840.1\|2803134_2804979_-\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NZ_CP040098.1\|WP_137425251.1\|2819525_2820689_+\|AAA-family-ATPase	gnl\|CDD\|349765	cd03111, CpaE-like, pilus assembly ATPase CpaE. This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.	7.59711e-79
NZ_CP040098.1\|WP_170180355.1\|2817843_2818254_+\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	6.50431e-17
NZ_CP040098.1\|WP_170180354.1\|2816277_2817558_+\|type-II-and-III-secretion-system-protein-family-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	1.06728e-108
NZ_CP040098.1\|WP_137425243.1\|2811768_2812317_-\|PAS-domain-containing-protein	gnl\|CDD\|379177	pfam13426, PAS_9, PAS domain.	4.47639e-06
NZ_CP040098.1\|WP_137425240.1\|2807942_2808587_+\|shikimate-kinase	gnl\|CDD\|238260	cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.	3.50434e-50
NZ_CP040098.1\|WP_137425245.1\|2814356_2814872_+\|prepilin-peptidase	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.97963e-12
NZ_CP040098.1\|WP_170180353.1\|2811262_2811826_-\|PAS-domain-S-box-protein	gnl\|CDD\|272971	TIGR00229, Sensor_protein_FixL, PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions].	2.9408e-08
NZ_CP040098.1\|WP_170180426.1\|2810243_2810486_-\|KH-domain-containing-protein	gnl\|CDD\|379029	pfam13083, KH_4, KH domain.	1.89748e-17
NZ_CP040098.1\|WP_137425244.1\|2814053_2814233_+\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	1.97146e-11

>NZ_CP040098.1|WP_137425243.1|2811768_2812317_-|PAS-domain-containing-protein
MEHLLERFRILEELDSLVLCEDSGGRVVFVSSFTLKFFGRHRNHVMGREIGRLFPGKPCFAGSPQGRAEIGNASRGVRWRSFACEHRRSDGARVWIAWKRKPFPGPSGDPHHFLSTGKDITALVQVQDALMVQETRYRLFFNSLNDASFVHQPGHDGTPGPFCSWKSMTRPAGVTVTPGTNW
>NZ_CP040098.1|WP_170180353.1|2811262_2811826_-|PAS-domain-S-box-protein
MEVNDAARRRYGYTRDELVRMTPDDLAVAGAEERVPSCPRTVLEEGQALIQAVHRTRDGKFMDVEINAKRFYWDGKPTILSIVRDMMDIPSRALHTRTQLSADCKPRCRGCPTDASTLPLPARRTLWIVRVPLMGRFRQRPFSRCGTSTACGRAETVLWKPGRPLRPHGLPLTALLCLKISPPKYRT
>NZ_CP040098.1|WP_137425241.1|2810578_2811241_-|MEDS-domain-containing-protein
MTMHFTPSSRKDLIFPKHTCLLYRRPADRIESTKAFVREGLALEERILWVTADIPDPSSPGAVQEAFGAPIREGQLVVLPPKGFVLREGRFQPRAVMAFIREEGKKALESGWNGLRIICDMSWAIQGFAGSEHLIEYEIHLGELLQARGLRILCQYELTRFPPALLLYVITAHPHIAFKGRIAHNPFYLVLPPSMLEMPPKTTLELWLAKLAESEEARVF
>NZ_CP040098.1|WP_170180426.1|2810243_2810486_-|KH-domain-containing-protein
MVDDPKNVKVSVLEGERTTVVELKVAKNDPGKIIGRGGATAAALRTILTAASTKLRKRAILAIVEGCGSFRTTSSVDPLR
>NZ_CP040098.1|WP_170180352.1|2808635_2809943_+|hypothetical-protein
MADPNVKAVSTGPQNPFQPVMDLLRGVDRNVVCGKYGLSAAQLEKLFADYQASRRQVALADHLILERVGRNDPCPCGSGKKYKKCCMAIHEEARKSLPKDELLSMEERARRREKLQKDVQKGFDLLVSQEYSKALRLAERFLEEFPEDDRLHDIVTTVHLATGNYDEAFHRARKRWQIAREEKDFFQEHGYHQREGIDRKQIVHFYSPATWLEKFWIAQRARAYRERYPKGDDPRLRALVNKLKVVNDPSRFQARQEEGLAVRREAVRPVLEELEAAGEGAIAYLLPLTYTFSWASLFVPDLLKKIATEDAVGLLAELSMFRFPYFAQRCLSHLEALGEKAFPRIAETMRDHRAFDELKAGLILVLGKIQTQESFQLLAELTEHESPYVVNWAAQALAGHKNPEALPVLERARARLGALSKIEGAIKELAAMKEA
>NZ_CP040098.1|WP_137425240.1|2807942_2808587_+|shikimate-kinase
MAGIETLRDSGKGGHPRPRVALIGFRATGKSTVGRLVAASLGRVFVDMDEELVRRFGMDIRRWVDRHGWPAFRVEEAALLRSLSCAVPSVIATGGGVVVDPGNRWVLRRRFFTVWLKASPPVVLMRLHQDPRTASLRPALTDHGFEGEVRLLLREREPWYRESSHAAVGTDGEAPERIAGKVLQAVAGPTGNPLCGIPGRPRLPDFFDSGVQRW
>NZ_CP040098.1|WP_170180351.1|2807086_2807767_-|lysophospholipid-acyltransferase-family-protein
MTFRKRPPTDALLLAVIPPLAAGLLRLLHRTCRFITLGDTTWRTASASDRPMLFATWHYAFPAVIYYFRNRQGVLMVSRSRDGEWAARVVHALGYQTVRGSSHRGGSRALREMLKSVEEGYDAGLIADGSQGPPQVAQKGILLVARSSGAPLVPFSMAADRYWRLNSWDRTVIAKPFSRIAFAFGPPIHVARRDRDLDRLRTHLQEELDRLTRLAWHYFDGTANGT
>NZ_CP040098.1|WP_170180350.1|2805900_2806812_+|DUF2156-domain-containing-protein
MKIPPRFPEFKTIETEDRPWIQEVLDAYRPETSEWTFTNLFIWRSHYNFRWSWMENLLVVVGDSDEGGRFALQPMGPGRRGDATGEILDWMAREWGVSDPRIQRADRRLADELEGDGRFIVEPTREHFDYVYRTRDLVELAGRKYHGKRNHVNRFRSTYRFEYAPLGEVHRRACLELADSWCRWRRCEEDLNLLGELEAIREVLTHLDRLPVEGGVILVDGMVEAFALGELLNEETVVVHVEKGNPELPGIYAVINQQFCEHRWSGVPWVNREQDLGEPGLRKAKLSYHPDHLVEKYQIRRAD
>NZ_CP040098.1|WP_137425237.1|2805064_2805619_-|NADH-quinone-oxidoreductase-subunit-NuoE
MNSVPTQTETEEREMIEAIEAMLPRFAKHRSALIPILQAVQQEHGYLSGGAMERVAEYLEISPSEVYGVATFYNQFRFHPPGRHQIKVCLGTACHVAGGDIILENFERKLGIRAGETTPDREYSVERVACVGCCALAPVAIVDGTVLGHMQPSRVEGLFVQFQVEREREEREKAEREPGGEQDA
>NZ_CP040098.1|WP_137425840.1|2803134_2804979_-|NADH-quinone-oxidoreductase-subunit-NuoF
MSTCALASGAAETRDAIKETLERIKVPARIVPVGCMGHCYAEPLVVIDHPASGFPPICYHRIDAGIARVVIRSFFEDGDPSFEYVLGALEENDLVPPVTQFPRFNLEERVVMELCGRIDPGDIQEYIARGGYAALARALDGEPESVIDTIERSGLRGRGGAGFPTGRKWRLARSARSERKVVICNADEGDPGAYMDRTILESNPHQVLEGLAIAAYAVGADEALVYVRAEYPLAVKTVQKAVRDAEACSLLGRGVLGTAFDLKVSVFQGSGAFVCGEETALIQSVEGRRGMPRHRPPYPVEKGLWGRPTVVNNVKTLASVPPIVSKGADWFRTIGTENSPGTAIFSVVGNVKHPGLVEVPMGTSLRKLIFDVCGGIPGKKAFKAVQIGGPSGGCLPERFLDTPIDFDSLAQAGAMMGSGGMVVMDQDSCMVDVARYFVDFTQKESCGKCTFCRIGTRHLLVMLDRITKGEGREEDLEIMETLSHDIKAGSLCGLGKTAPNPVITSLRYFREEYEAHIRERRCPALKCRALVAFYIDLERCARGCDACVGCCPVEAIFTTKGRKKAIDQQRCVKCGECMVACPPEYNAVFKVSPPERAPVIERPPENGPAPAGNP
>NZ_CP040098.1|WP_137425244.1|2814053_2814233_+|Flp-family-type-IVb-pilin
MERILQFIRDEEGATAVEYGLIVGLIAAAIITVVATLGDNIAALFQTIADEVGDATPAE
>NZ_CP040098.1|WP_137425245.1|2814356_2814872_+|prepilin-peptidase
MFILAYPVVVCVAILCIGSLYPELKYHRIPNYLTFSGMAAGIFYQCAFAEGIVFSVAGLLLGLGVLLPFYLLGGMGAGDAKLMGAVGAFLGPAGVFEAFLFSALIGGVYAVVLMTIHGYLRQNLKRYGRILKGFFITQEFIYVPPPKEMKDIKLFYGVAISVGTLFSVLFP
>NZ_CP040098.1|WP_137425246.1|2815300_2816110_+|Flp-pilus-assembly-protein-CpaB
MMSRFMPFFILTAGIIMALIAGVLTYERLKETHRRKEEVIPATKVAVAAKDLSRGTKLTGEMIKTVSWPKDTLPSGCFTAPEDLTDRVLLFAVRENQPILENLLAPKDVTVGGLCAILNPHKRAMAVRVDDVIGVGGLINPQSRVDVFVTMHEGASGVSKPLSKVVLQNILVLAVGNQIEQKDQEAKAGSVKVVTLEVTPEEGEKLALAVNSGRIQLALRNPLNTETIETKGATIPALLACPRSSPPKARPDYFTVKIMKGGTLTEERF
>NZ_CP040098.1|WP_170180354.1|2816277_2817558_+|type-II-and-III-secretion-system-protein-family-protein
MVKSPEIKVKDISLTEPKTADVVVVTPFKINIAGRAPGMTQVVLRGVNSTDCAVFDLEVFASLSSLKEELHELLPGEHIKVQAVNDSIFLSGEVSSAANMSVAVSVAEQFVPNKEKLVNLLEVGGVQQVMLEVRVAEMSRALGRRLGINFGYQRGNDFALTTLGSLSGINESTIPVTGLFDMQISERINALFRFGHHSATWTGLIDLLKEHELIKILAEPTLIATSGQEASFLAGGEIPIPSPEEYGDVDIEYKPYGVGLSFTPIVLSSERIGLKVAPEVSEPDYTQLVYYAGYAMPAFTTRRTSTSIELGDGQSFAIAGLLKNTTRQMVSKYPLLGDIPVLGALFRSSEFQKNETELVIIVTPHLVKPLDMARQSLPSDYYVEPDDFEFYLFGAMEGKERPGISPKAEGMEGEFGYIAPLGLSND
>NZ_CP040098.1|WP_137425248.1|2817571_2817841_+|hypothetical-protein
MRQGLILILGLLILAGGCTACPSRLELASGASFQSQKFNQILDPEAGRNLKPVESLDSEATEIALEKYRESFKKPREPEKFLMEIGRGR
>NZ_CP040098.1|WP_170180355.1|2817843_2818254_+|pilus-assembly-protein
MIKGTKVGNKAEKGAAAVEFAIILPILIMLLFGIFQFGIAFNNYIAITHAAREGARLAAVDPLNPDDLKEIIIQRAYPVPLKEGDITIRTPEGTEVGQPVEVEISYDITIEIPLVGSWSIPLTNKAVMRLENSGHE
>NZ_CP040098.1|WP_137425250.1|2818253_2819324_+|Tad-domain-containing-protein
MISKEPNRCKSESGAVLVIVSLCMLALMMITALAIDVGSIYRERRFLQTVADSAALAGAQELPVDVDGARSKAVEYASRCIADIDEYDVYVEVSSTLAPNDTIEVKAINPTAELYFARVIGLSHTEVAASARAMVASPMSVYNIVPWGIFVSDNISLEEYLQPGEPQTLKFGAGEGNGAGQGNGADEGDGAGEGNGAGARWGGNFGILDLDGGPGGEAGDYENWIINGYPGPLSVGDTISTKPGNMAGPTLAIDKRVEVWDDFDELVTYQDGNIIELARSDDQVVVVPLVHPVEDLHGRTEVEIVAFAPFILTEEPQGPSGQRDIIGRFIHHALIVNEGEYKAVEDVGLKIIRLID
>NZ_CP040098.1|WP_137425251.1|2819525_2820689_+|AAA-family-ATPase
MDKQIIKVTLKTDNPQVKSEFKDIIDKLDFTELIQPDGAGFADVLVMELTDDLKKDLEFIKSVLDSKKSKVFLTSSQSRPEIILQTMRMGISDFFPQPLKKEEIERAFERIKEEAHEGKKTRQGKVISVLGAKGGSGVTTVATNLATSLSRLTEENGVGIIDLNVLLEDVSTFLDLSPRYTIAQVSESIERLDLTLLTGFLTRHPYGIYLLSFPDNIDEISELPPDGLKKIVNIMRTAFDFTIVDIPHSFDPLTVQAFELSNFIFVVITLDVPSLRNARRLLDMFCALGYSDDKIKIVVNRYAKGSEISLKDVEAVLKCQVFWIIPNDYPAVISSINQGKPLSETAAKSEICNSFEKLALMLTQGAEAQKRTKRPKFLGYLLRRKAD
>NZ_CP040098.1|WP_137425252.1|2820691_2822059_+|CpaF-family-protein
MPPFDHQKRIQALNSNKPSSGIRRLEKYLDRSEYHELKTRVHHKLVETLDLSLISSEDRPALLREINRLTEEILAEEGLPLSSRERERFFREIQDEVFGLGPLEPFLQDPTVSDILVNSHKQVYVERFGRLELTDARFKDDAHLMTIIEKIVADIGRRVDESSPMVDARLPDGSRVNAIIPPLALDGPVLSIRRFAVDPLKMDDLIAVKTCTPEVAELLEAIVAARLNVVISGGTGTGKTTLLNVLSRYISNEERIITIEDSAELQLQQDHVVRLETRPPNLEGRGEITQRHLVKNSLRMRPDRIIIGEVRGDEALDMLQAMNTGHDGSLTTIHANSPRDALTRLETMVSMTGYDIPVKVMRHYIASALDVLIQLSRFSDGSRKVTSIQEITGIEEELITMQEIFSFKQQGITADGKVKGVFRFTGIRPNFMDKIAMRGIELPYNFFDPTKIYEV
>NZ_CP040098.1|WP_137425253.1|2822080_2823049_+|type-II-secretion-system-F-family-protein
MDVLIGTLVFLSITFCIQGLYGIVLKMRTKERKEKQIKRVISGDSLRGEERKAQIVKRNILSEIPWLNRWLSYFRGIRRLDRLREQAGIRYPAGFFILLSLFLAFLGLYLSAIFLHRIVVGLSAALILGASPYFYLNYKKRKRMERFERQLPEALEFMARSLRAGHAFIGSLRMVAENFSDPLGTEFAKTFEEINYGVALPQALRNLTGRMDVTDLRFFVVAIIIQRETGGNLAHILENISYTIRERFKLAGQIKALTAEGRLSAIILCIMPFGMAFLLFLINPDYIKTFLDDPIGPFFIGLGLFMMILGIISMKRIVRVRV

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Crispr_ID: NZ_CP040098_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_26

2925891-2925995

Orphan

Consensus_repeat	Method
TCAATGCGTTGGCTTCTTGACGGATCCGGCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_26

>merge|NZ_CP040098|26|2925891-2925995|CRISPRCasFinder
TCAATGCGTTGGCTTCTTGACGGATCCGGCATCGGGCAGCCGGCATAGCACATGACGAGGGGACGCTGCGTCTCAATGCGTTGGCTTCTTGACGGATCCGGCATC

>NZ_CP040098|26|26|2925891-2925995|CRISPRCasFinder
TCAATGCGTTGGCTTCTTGACGGATCCGGCATC	GGGCAGCCGGCATAGCACATGACGAGGGGACGCTGCGTC
TCAATGCGTTGGCTTCTTGACGGATCCGGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425322.1\|2913129_2913495_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137424347.1\|2936040_2936205_+\|benzylsuccinate-synthase-gamma-subunit-family-protein	unknown	unknown	gnl\|CDD\|369746
NZ_CP040098.1\|WP_137425330.1\|2930786_2933288_+\|formate-acetyltransferase	unknown	unknown	gnl\|CDD\|153086
NZ_CP040098.1\|WP_137425329.1\|2929389_2930364_+\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP040098.1\|WP_137425333.1\|2936232_2938734_+\|formate-acetyltransferase	unknown	unknown	gnl\|CDD\|153086
NZ_CP040098.1\|WP_137425331.1\|2933456_2933681_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212779
NZ_CP040098.1\|WP_137425332.1\|2934816_2935791_+\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP040098.1\|WP_137424347.1\|2930594_2930759_+\|benzylsuccinate-synthase-gamma-subunit-family-protein	unknown	unknown	gnl\|CDD\|369746
NZ_CP040098.1\|WP_170180367.1\|2910155_2910953_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NZ_CP040098.1\|WP_170180369.1\|2926523_2926703_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236220
NZ_CP040098.1\|WP_137425316.1\|2906814_2907408_+\|DUF4125-family-protein	unknown	unknown	gnl\|CDD\|379239
NZ_CP040098.1\|WP_137425327.1\|2926796_2927276_-\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP040098.1\|WP_137425317.1\|2907479_2909063_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP040098.1\|WP_137425325.1\|2921786_2925881_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380293
NZ_CP040098.1\|WP_137425328.1\|2927372_2928551_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP040098.1\|WP_137425324.1\|2918940_2921778_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350769
NZ_CP040098.1\|WP_137425323.1\|2913604_2918944_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350681
NZ_CP040098.1\|WP_170180368.1\|2911046_2911859_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235852
NZ_CP040098.1\|WP_137425318.1\|2909135_2910074_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NZ_CP040098.1\|WP_137425321.1\|2912137_2912932_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|180591

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137424347.1\|2936040_2936205_+\|benzylsuccinate-synthase-gamma-subunit-family-protein	gnl\|CDD\|369746	pfam08201, BssC_TutF, BssC/TutF protein. BssC short protein (57 amino acids) has been described as the gamma-subunit of benzylsuccinate synthase from Thauera aromatica strain K172. TutF has been identified and described as highly similar to BssC in T.aromatica strain T1.	6.82227e-09
NZ_CP040098.1\|WP_137425330.1\|2930786_2933288_+\|formate-acetyltransferase	gnl\|CDD\|153086	cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related enzymes. This family includes pyruvate formate lyase 2 (PFL2), B12-independent glycerol dehydratase (DhaB) and the alpha subunit of benzylsuccinate synthase (BssA), all of which have a highly conserved ten-stranded alpha/beta barrel domain, which is similar to those of PFL1 (pyruvate formate lyase 1) and RNR (ribonucleotide reductase). Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. DhaB catalyzes the first step in the conversion of glycerol to 1,3-propanediol while BssA catalyzes the first step in the anaerobic mineralization of both toluene and m-xylene.	0
NZ_CP040098.1\|WP_137425329.1\|2929389_2930364_+\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	8.39669e-117
NZ_CP040098.1\|WP_137425333.1\|2936232_2938734_+\|formate-acetyltransferase	gnl\|CDD\|153086	cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related enzymes. This family includes pyruvate formate lyase 2 (PFL2), B12-independent glycerol dehydratase (DhaB) and the alpha subunit of benzylsuccinate synthase (BssA), all of which have a highly conserved ten-stranded alpha/beta barrel domain, which is similar to those of PFL1 (pyruvate formate lyase 1) and RNR (ribonucleotide reductase). Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. DhaB catalyzes the first step in the conversion of glycerol to 1,3-propanediol while BssA catalyzes the first step in the anaerobic mineralization of both toluene and m-xylene.	0
NZ_CP040098.1\|WP_137425331.1\|2933456_2933681_+\|hypothetical-protein	gnl\|CDD\|212779	cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.	0.00182434
NZ_CP040098.1\|WP_137425332.1\|2934816_2935791_+\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	1.35485e-119
NZ_CP040098.1\|WP_137424347.1\|2930594_2930759_+\|benzylsuccinate-synthase-gamma-subunit-family-protein	gnl\|CDD\|369746	pfam08201, BssC_TutF, BssC/TutF protein. BssC short protein (57 amino acids) has been described as the gamma-subunit of benzylsuccinate synthase from Thauera aromatica strain K172. TutF has been identified and described as highly similar to BssC in T.aromatica strain T1.	6.82227e-09
NZ_CP040098.1\|WP_170180367.1\|2910155_2910953_+\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	8.44337e-81
NZ_CP040098.1\|WP_170180369.1\|2926523_2926703_+\|hypothetical-protein	gnl\|CDD\|236220	PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.	1.0957e-10
NZ_CP040098.1\|WP_137425316.1\|2906814_2907408_+\|DUF4125-family-protein	gnl\|CDD\|379239	pfam13526, DUF4125, Protein of unknown function (DUF4125).	9.47723e-67
NZ_CP040098.1\|WP_137425325.1\|2921786_2925881_+\|N-6-DNA-methylase	gnl\|CDD\|380293	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated with PGL (phage growth limitation), a type 2 BREX (bacteriophage exclusion) system. The phage resistance appears not be restriction, but does manage to inhibit phage replication.	1.21659e-08
NZ_CP040098.1\|WP_137425317.1\|2907479_2909063_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP040098.1\|WP_137425327.1\|2926796_2927276_-\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	3.40681e-48
NZ_CP040098.1\|WP_137425328.1\|2927372_2928551_-\|hypothetical-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	7.43833e-48
NZ_CP040098.1\|WP_137425324.1\|2918940_2921778_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.9233e-60
NZ_CP040098.1\|WP_137425323.1\|2913604_2918944_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350681	cd17923, DEXHc_Hrq1-like, DEAH-box helicase domain of Hrq1 and similar proteins. Yeast Hrq1, similar to RecQ4, plays a role in DNA inter-strand crosslink (ICL) repair and in telomere maintenance. Hrq1 lacks the Sld2-like domain found in RecQ4. Hrq1 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.50733e-64
NZ_CP040098.1\|WP_170180368.1\|2911046_2911859_+\|hypothetical-protein	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	3.48037e-73
NZ_CP040098.1\|WP_137425318.1\|2909135_2910074_+\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	2.16857e-78
NZ_CP040098.1\|WP_137425321.1\|2912137_2912932_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|180591	PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.	1.54739e-73

>NZ_CP040098.1|WP_137425325.1|2921786_2925881_+|N-6-DNA-methylase
MSRRKQDFQAVRSEGGLLPPDLLRRILDPRGELPGTRPKDYDLAKGERLHERITQSWNKLLKQWKDFQSVRTGQGARTGITNERWTLPLLRELGFGSLPTTPAPEINGRTYAISRMFGPVPIHLIGCELSLDRRAAGVRGAAASNPHGLVQEFLNRSPKHLWGIVCNGLRLRILRDSQALSRQSFLEFDLESMFDGELYSDFVPLWLTAHASRFVPRDGDRPESCYLEEWTRIAREQGTRALGDLRQGVERALEILGEGFTSHPQNTRLRDALRSEDLSLSNFHGQLLRIIYRIIFLFVSEDRTLDGVPLLHPRGNSAQARAARERYAAHYSTSRLRDLASRIKGSRHGDLWRQFQVVVQALSGTPDGEAAREHLALPALGSFLWNPRSTADLNDAELANYDFLEALRSLAFTRQGKVLRPVDYKSLGAEELGGIYESLLALIPRISADGARFTFARFAGSERKTSGSYYTPDALVQSLLDTALDPLVDAAVKGKSGPEAEEALLSITVCDPAVGSGHFLVGAARRLARRLAALRAQTQGDSEPSPLLYQQALRDVISRCLYGVDLNPMAVELCKVSLWLEALEPGKPLTFLDHHIQVGNSLLGTTPELMKEGIPDDAFKPLIGDDKKICRVLRRKNKQESDGQITMYPLLAAESQKAYRTMEDRARALDEKPEETLDEVREKAASFNELLGSEEYRRARLAADAWCAAFVWKKQKDAPPPIITDILRKLQETPNALTPEQRKEVQRLADQYRFFHWHLAFPQVFARGGFDCVLGNPPWERVKLQEKEWFAGRNEAIASAPNAAARKRMIQDLIVSEPRLHEEFIEDLRRAEGESHFFRSSGRYPFCGRGDINLYAVFAEAMRDVLNERGRMGCVLPTGIATDDTTKFFFQNVIETRSLVSLFDFENKGIFPEVDSRMKFCLFTAGGGKQPTHTAAEFAFFAHGVEDLRDPERRFSLSAEDIALLNPNTLTCPVFRSRKDAELTKAVYRRVPVLIREARDGRPEENPWGVKFTRMFDMSNDSDLFRTRDQLEADGWRLDGNIFEKDGEKYLPLYEAKMIHHFDHRWATYDGTKIRDVASEEKQDPAFVVLPRYWVKEADVQAALGPTGWTRGWLLGWRDITNTTNERTVLGGVFLACAVGNNLPIWTVAMEDAQLFSSIFSSHSLDYAARFKVGGTHLNFFIAQQLPALPPDRFENTCLWTADNKNLKSWFLPRILELTYTAWDLQPFARDCGYEGPPFRWDEERRFLLRCELDAAFFHLYVPATADGQWKRALKDEGAVRDEAPEELEELKRHFSTPRDAVDYILDTFPIVKRKDEQRYGEYRTKRVILEIYDAMQEALRTGTPYQTRFDPPPAHPSVVHRPC
>NZ_CP040098.1|WP_137425324.1|2918940_2921778_+|DEAD/DEAH-box-helicase
MTMALQFEPGSLIHARGREWVVLPESTDDLILARPVGGLDEETAGIIPAIESVQSSSFPLPGRGDLGDSFSGRLLRDAARLSTRAAAGPFRSFGRIAVEPRPYQLVPLIMALKLNPVRLLIADDVGIGKTVEAVLIARELLDRGEIRRFTVLCPPHLAEQWQLELSQKFHIEAELILSGTIQRLERDLPLDISVFDRYPFTVVSADFIKTSRRAEDFINKCPELVIVDEAHGCTVGDGSGRARQQRFELLRRITSEESRHVILVTATPHSGNEQAFRSLLSLLRKEFADLPLDLDAKGREGIRRKLARHLVQRRRADIRHYLEADTAFPERKDKVPEPTYTFTEPYRKFFNDILSFVEGYVSDEEGSWRHRRVRYWSALALLRCVSSSPAAAAATLRTRAAVDAADDEAVEDVGRRTVLDQDDTDDALPVDFSPGSDTESATDTVRRKLLEFARRAEAITPEQDNKLQGAIQEIQGLLDEGFHPVVFCRFIDTARYVAEHLHTALKGKVRVEAVTGTLPPAEREARIQALVTEPGPYVLVATDCLAEGINLQDHFNAVLHYDLAWNPTRHEQREGRVDRFGQKSPEVRVITYYGQDNPIDKAILDVLIRKHKRIKSDLGIIVTVPKSSEEIAEALFETARHRRKEAAAPRQLVMPFVYDLERKRKELHQEWDSASDREKVSRSRFAQHALDPDVVAGELRSVRDAIGRSQDVARFFRETLQAAGIPHEMNGQAVKVHLGDVTPRSFRQALGMDEPFTGRFELPVDRDEIYLARTSPVIEGLAGWVLDQALNPLAGNGRRIASRLGVMATSLVSGRTTLLIVRFRYQMKRSTGVMESLLCEEVVPMACTGSSYDPVWLPAEEAEALLDAVPEKNLPSTAVDQQTGLAERTLPKLRELLASAALERAEKQRQAHERVREAVPASSRIGHVEPVLPVDILGAFILLPR
>NZ_CP040098.1|WP_137425323.1|2913604_2918944_+|DEAD/DEAH-box-helicase
MDIFALRDKLVEDYNEYTRSFIKIGDPRIDRFVTEELNAGAFWPEPLIQLNPSFESGGTIDDLVERGILHPKCSEIFRLGKSDEDPLGKELSLYRHQLDAILKAKEGRSYVLTSGTGSGKSLTYIVPIVSHVLHRGSGKGIQAIVVYPMNALANSQAEELSKYLQKVYPERLPPVRFARYTGQERGAEREQIRTNPPDILLTNYMMLELLLTRREDAGLVEAARALRFLVFDELHTYRGRQGADVAMLIRRCRLAFGAEDIVCVGTSATMASEGTSEDQKQHVAQVGQKLFGVPFTSDQIIGEALERATRELDFNAPDVIAQLRHAIETDAEAPDDTDSFCSHPLSSWIESAFGIRTESETGRLVRQAPRRLLGGDGAAEALARITSMDSSRCAHVIRRFLLKGSQIYRSASSRFPVFAFRLHQFFTRGDTVWTTIEPEDQRHLELSKKISKPGEPQKLLFPLVFCRHCGAAYYRVKVAKDEHGRRLLPREDRQEEDEHLTIPGYLFISSQRPWPRTVGPEMLERLPDFMKEWTVEETERPARDAKKDLPEPVFVDASGRIVSEGEGLDAAFIQGHFPFCLHCGVAYTRHQRAERTKLATLGVDNRSTATTILAIRALIELQGDVQLRREARKLLSFTDNRQDASLQAGHFNDFAQVALLRSGLFKALETAGAPSTLNPGPNRTAAREGRSPEGFHSAGLKHYQLSRYVLDAMGRAFEEYASDPDVRGPGRQTTEDALRRVIEYFLYRDLQRGWRVTAPNLEECGLLRFDYEGLTGDESLLAEKDLWESGFTIRTTSKDSTFIPTPEPLRSLSADVREEILRTLLDVLRRSLAIKVDVLNPSKQHDLVEQTRSRLREDTVWYLDDPRDLVKATVAYPRPQRKGKRRDDPYGLFVSSYGAFGRYVKRTLNRNAPGIRLGRAEIDEIIGFLFLGLRRYGIVEQVRGDRDGEDPGYQINPDAVRWLPGTGAIRPIDRTRLAEAGEVPPEVNRYFVECYRRFVDLKCLLEAREHTAQVDAELRKDREDRFRSGRLPLLFCSPTMELGVDIADLNVVNLRNVPPTPANYAQRSGRAGRGGEPALVYTYCAGRSPHDQYFFREPEQMVAGVVAPPRIDIANRDLIRSHIHAVWMEIAKPDLGRTLTQVLDLRPEDGGLPLPIQEAILEVLRNLRYRSQALERAQRLVWSIREELSASPWFHENWVKDILDQLEKSFDTACDRWRSLYRAAVRQRELHHRIIGDHSRPENERDHSRRLRAQAESQIRLLTEAEGLYEGDFYSYRYFATEGFLPGYNFPRLPISAYIPGRRKREGRDEFVSRPRFLAISEFGPRALIYHEGARYRVYKANLDFGSDDVEATHSLATAVMKRCAGCGYAHMEQGLAFAEICDRCGTTLDRSACIENLVYMQNVSLQPAQRITCDEEERQRLGYRIVTAYRFPEVGGRLDRRDAEIWCDGDLMLRLSYGDAADLFRINLGWSNQRRNQRVGFDLDLERGYWSRNQADTEDSDNALASGRVQRVVPYIRDTKNALVMSFDPPPGMLEMAGLQAAFKEAVQKYFQIEPRELGCEPLPDADNRREILFYEASEGGAGVLRQIVDDPSVFPALARTALEICHFDPVTLEDKASNTCGQACYACLLDYGNQPDHRYLDRYLVRDFLARLTAAQCRPSGGVGSREERLAALRKRCDSALEKKWLDVLDKLLLNPPSDAQVLIEACHTRPDFFYADTNAAIYIDGPPHDDPAQIREDEAVTQRLMEHGYIVIRFHHKDDWTEIFRRHPDIFGRIGS
>NZ_CP040098.1|WP_137425322.1|2913129_2913495_+|hypothetical-protein
MKPGKNAPSSKIRLRKHLNADALVRAVRREFEKIPDARKGRPQISFADASMSAFAMFSLKDPSLPAFEKRWSARDHNLHAPYHIEKADEATAEGRAVEFRHAAVDNCDTLHYYLLVNDLPP
>NZ_CP040098.1|WP_137425321.1|2912137_2912932_+|enoyl-CoA-hydratase/isomerase-family-protein
MSLVIYEKKDKIAYITMNRPEKLNALNPELVNELAKTWVDFRDDDDVWVAILTGMGNAFCAGVDIASDVELLEAIKGTPPSRVISWEKEAPAWRASPASYDLSKPIIAAINGYCLGGGLWLALESDIRLATPTAQFGVPEPRLGMPATFTALLQRYIPRGVACEMLLTTDGMSAHRAYEVGLVNRIVSAEELLPAATEMAERICRNNPLAIRAAKELVRRGEDMSRPDAMSLTDHVIHSLMRTEDIMEGFKAFVEKRSPIWKGK
>NZ_CP040098.1|WP_170180368.1|2911046_2911859_+|hypothetical-protein
MKFETIILEKKDHLATLTLNRPNSRNAMNRKMMDELIMAMEDVAEDDFIRALLITGAGKAFCAGADLDIMPGGKSGEDLAAMGVEALRRSFLFKASRKIMIGIQTMEKPTVAMINGPCVGAGFDLALSCDLRTASDDAVFMCGFVKLGLFPGFGAAWLYPKALGLAKAMEMLYTGDALSAAEAKEIGMLNHVASRESLEAVTMAMVTKIVNGPPIAIRLMKSQVYKGLTSDFATMLDDAAVYESITLASKDHVEGLTAFREKRPAAFKGI
>NZ_CP040098.1|WP_170180367.1|2910155_2910953_+|enoyl-CoA-hydratase
MKWDYVLFEKKDAIGTITLNRPDKYNAFAGRMREEILEAVESAGRDVDVRVLVITGAGKAFCSGGDVNEFVEGTSKAIADAGTATSDRMTMCKVVLAINSLEKPVIAAVNGVAAGGGCNLALSCDIRIASEKARFGQVFTRRGAHPDWGGIYFLPRLVGYAKAAELIFTGEVIDAQEAFRLGMVNKVVPHEELHRATYDLAGRIARNAPIPIALAKRGLQNFFKMDLAMALDYEAYALGVVSKSDDFMEGFKAFLEKREPVFRGR
>NZ_CP040098.1|WP_137425318.1|2909135_2910074_+|nitronate-monooxygenase
MHNRITRILGVKYPLILGAMRHITLGEMAAAVSNGGGFGQIAASGLSTDRLRSELARALELTSLPVGINIPIYRPNAFDALAIAIEAKLRVITTSAGDPSKLMGAAKEAGLKVLHKVSTVEMAKKAQSAGVDGVIATGFEAGGHVGREMMTTFCLVPQLVDALTIPVVAAGGIGDARGFLAALALGAEGAEVGTAFLATHECPVPGFFKQSVVDAGCGATVLLGKDAMPMRVLNNKTAARIRGSDKATEDQRLTAEGDRAYVMECADAETSLMPCGQVCGLIHEIGSAVEVFPNMVRSARSLLEALRGVFDT
>NZ_CP040098.1|WP_137425317.1|2907479_2909063_+|acyl-CoA-carboxylase-subunit-beta
MDTLLDKRLRELEEVRRKVLMGGGEEKVRQHHGLGKLTARERVSQLLDPDSFFEIHMLVGHAVDQPGDGIVCGCGTIYGRPVYVFSQDATVRGGSIGMEHGRKMYETIERAIDKKVPVIGLNDSPGARLPNAYEVEMLGSMKRSLFAGLQEKHGGSVFYPNTLGSGLIPQISAILGTCGGISVYSPALTDFIFMVDGISHMFITGPDVVRMVTGEDISKEDLGGAKVHAQKSGVCDFRCVSEQECLAEIRRLISFLPLNCEEKPPVYQSSDSPNRSCDELNEVVPSSPNKPYDVHRIIHAIVDSGDFLEVKREFAREVVVGFGRLDGKTIGVVANQPSVMAGAMTFDSSDKQARFIRFCDCFNIPILLLVDTPAYMPGSGQEHSGIIRHGAKVLYALCEASVPRICVVLRKAYGGGNLGMGVLSGLSTDIVVYWPTVETGILGAEQSVNLLYGRRKDVTKEFIQEKLQAYRETYANPIYDASSNLGVHDVIAPAETRSYLIRAFQALPEMRESRVRKMNKRHGNIPL
>NZ_CP040098.1|WP_137425316.1|2906814_2907408_+|DUF4125-family-protein
MDARSLVSQILDIELEMFKSVPARYPVSCQDDEEGFRIMRAAQFAVWSEDTLRSYLQDLEAARQADRNLMTLKYARMEDLVAPLQNNVEITELIEEIVLIQLQWQREMEARYPALMARGRPMTDDGNGTGETSFERYLRAELETYSPVTLTNLFRDIVARQVKGENMTEEIYEHMVKALGYSSLVEADENARRQTTQ
>NZ_CP040098.1|WP_170180369.1|2926523_2926703_+|hypothetical-protein
MLYTGDALSAAEAKEIGMLNHMVSRESLEAVSMAMVTSILNGSPIAMRLQTYILCGYFH
>NZ_CP040098.1|WP_137425327.1|2926796_2927276_-|DUF2147-domain-containing-protein
MKKLMVLAAGIMFLWAASDAIGAESDGILGVWTTQGGKYKVEIFKCGAAFCGKVVWLAEPEYPAGDEKGMAGKAKVDRNNPEESLRSRPLLGLQMMKGFTYSADNSTWEGGTIYDPDNGKTYKCKITQPNADQLNVRGFIGFSLLGRTEKWVRAETGNN
>NZ_CP040098.1|WP_137425328.1|2927372_2928551_-|hypothetical-protein
MLWEILLLSGYVVIGEFLASISTYAVYKKGLTTRVLIWLLPGIFCLCVTLFIVGKFGAYNPRAVAFGLIVGPSSLLINLILLARRIVTPITQVALTLSASSRQIVACSAQVTSVGQSLTEAASEQAASTEETSAALEEIASMAAQSTESAGEAQRLMDHAGGMNAHANDLMHNLRAAMKTVLDASEGTKRIIKVIDEIAFKTNILALNAAVEAARAGEAGAGFAVVADEVRTLALQSAKSAQDTAALIETTLKGIQDAVQLTLETDEAFQQMKDGSEKVAVMVSQILTASKEIAIGIAQSNEAVAQIAKMTQQNAAAAEQLASSAGELNGLGKAVDRSAQKLTQVMQGTAEVVSDPAFVDAFAVPRHALPRAEGLLPDAGASRTSLPVAETF
>NZ_CP040098.1|WP_137425329.1|2929389_2930364_+|glycyl-radical-enzyme-activating-protein
MENRPLVTQIQRFSVNDGPGFRTIVFFKGCPFRCQWCHNPETQSFSPEIYWKSRLCVQCGHCFDVCPNQAIFPPIPPEEAQREDSTYYKIDKARCDRCMKCVEACSYGALEQVGKPMSIEEIVEELERDRPFYDNSGGGVTISGGEPLVFGEFVRKLMDALKARSLHICLDTSGHSPWEVLEPVAERADIILYDLKHLDSDEHERLTGVPNQLILHNLQRLAAKGCRIWLRIVVLPRCTDSIDYHRRVVAFLRSLPGSLERIDLLPFHNWCQDKYRWLGRPWSFAETESVHPDEVEPLLELYLSAGLNATIGGSGFDAQATASG
>NZ_CP040098.1|WP_137424347.1|2930594_2930759_+|benzylsuccinate-synthase-gamma-subunit-family-protein
MPTCKECKNYFPQEDDESMGDCVQRVVDPRQAYYRAKPVAADQDASKCSQFAKR
>NZ_CP040098.1|WP_137425330.1|2930786_2933288_+|formate-acetyltransferase
MAQAAEAREDIEQLKESQQWWKLAEKLRSPRLDYLRKAVWKKGPIGGVYAPGIKIELMRNILFTESWKENERDPIMMRKAKALAHVWRNIPIFITDHAQLVGYVGSAPNTLGMWPIEGASMVNEEVYNDEGVIPEPEEESLKIMADLNNYWAGKTAIDQVARLLDPEDAVKFMSGAIGWGVPTSAYGYSGKDYEYLLTGKRGFEDIMEEIEARLDEAQEIVRGTPGPELLPYYEKIQNWEAMLIVLEAAVDWARRYARLARIIAENFESDPKRKEELLRIAETCERVPAKAPRSLQESLQMDHFIQILARYEAYEGAWPARPDYYHGPFYDKDVNIEKNLTREEALDLVGEFMIRAYEVGGFGPRWGREGLQGITGTWVWTIGGVKPDGTDACNDLTRAFLQAARLVRVANPTFAFRWHPKVPDDIMRECFECIRHGLGYPSMRNDPILVQNAMYWHGHPLEEARTWVHQACMSPCPTTKHGFQPFRMASATANCAKMIEYALFNGYDPVVNMQMGPKTGDARKFKSFDELFEAWVKQMEWLTDTLVRTVNLGRVKDPEFYGRPFLSAISERSVEQGTDIVNPEGERGNSWVTGFTWVENADSLAAVKKLVFDEKKYTMDQLMDALQANWDGYEEMRLDFVRNAPKWGNDDDYVDQIMVRCLEEVARHSKELKDPTGNPWPLLPENVSGNIHYANIVGALPNGRKRGDALYDGGISPGPGLDKKGPTAVLKSCGKFDHVRLGRAFLLNQRLSPTQLKGEQGYQLWKAYMRTWADLGLDHVQFNMVDDATLRAAQKDPEKYQEVIVRVAGYSAHFVDISRKTQDNIIQRTIQGL
>NZ_CP040098.1|WP_137425331.1|2933456_2933681_+|hypothetical-protein
MKCSACGFEAPANKFRYLYNARIDDPLSMRQCIKCGEVIAVNELKGEAVQIVKPGDAPWGKSAGIEGVTPSVLD
>NZ_CP040098.1|WP_137425332.1|2934816_2935791_+|glycyl-radical-enzyme-activating-protein
MENQPLVTQIQRFSVNDGPGFRTIVFFKGCPLRCQWCHNPETQSFSPEIYWKSRLCVQCGHCFDVCPNQAIFPPIPPEEAQREDSTYYKIDKARCDRCMKCVEACSYGALEQVGKPMSMEEIVEELERDRPFYDNSGGGVTISGGEPLVFGEFIRKLMDALKARNLHICLDTSGHSPWEILEPVAERADIILYDLKHLDSDEHERLTGVPNQLILHNLQRLAAKGCRIWLRIVVLPGCTDSIDYHRRVVAFLRSLPGSLERIDLLPFHNWCQDKYRWLGRPWSFAETESVHPDEVEPLLELYLSAGLNATIGGSGFQAQATASG
>NZ_CP040098.1|WP_137424347.1|2936040_2936205_+|benzylsuccinate-synthase-gamma-subunit-family-protein
MPTCKECKNYFPQEDDESMGDCVQRVVDPRQAYYRAKPVAADQDASKCSQFAKR
>NZ_CP040098.1|WP_137425333.1|2936232_2938734_+|formate-acetyltransferase
MAQAAEAREDIEQLKEKQQWWKVAEKLRSPRLDYLRKAVWKKGPIGGVYAPGIKVELMRNILFTESWKENERDPIMMRKAKALAHVWRNIPIFITDHAQLVGYVGSAPNTLGMWPIEGASMVNEEAYNEEGVIPEPEEESLRTIAEINNYWAGKTAIDQVARLLDPEDAVKFMSGAIGWGVPTSSYGYSGKDYEYLLTGKRGFEDIMEEIEARLDEAQEIVRGTPGPELLPYYEKIQNWEAMLIVLEAAVDWARRYARLARIIAENFESDPKRKEELLRIAETCERVPAKAPRSLQESLQMDHFIQILARYEAYEGAWPARPDYYHGPFYDKDVNIEKNLTREEALDLVGEFLIRTYEVGGFGPRWGREGLQGITGTWVWTIGGVKPDGTDACNDLTRAFLQAARLVRVANPTLAFRWHPKVPDDIMRECFECIRHGLGYPSMRNDPILVQNAMYWHGHPLEEARTWVHQACMSPCPTTKHGFQPFRMASATANCAKMIEYALFNGYDPVVNMQMGPKTGDARKFKSFDELFEAWVKQMEWLTDTLVRTVNLGRVKDPEFYGRPFLSAISERSVEQGTDIVNPEGERGNSWITGFTWVENADSLAAVKKLVFDEKKYTMDQLIDALQANWDGYEEMRLDFVRNAPKWGNDDDYVDQIMVRCLEEVARHSKELKDPTGNPWPLLPENVSGNIHYANIVGALPNGRKRGDALYDGGISPGPGLDKKGPTAVLKSCGKFDHVRLGRAFLLNQRLSPTQLKGEQGYQLWKAYMRTWADLGLDHVQFNMVDDATLRAAQKDPEKYQEVIVRVAGYSAHFVDISRKTQDNIIQRTIQGL

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Crispr_ID: NZ_CP040098_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_27

3064027-3064137

Orphan

Consensus_repeat	Method
CGATCAAGTCTGCATCCAGCTGCGTGAGATGATCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_27

>merge|NZ_CP040098|27|3064027-3064137|CRISPRCasFinder
CGATCAAGTCTGCATCCAGCTGCGTGAGATGATCTACAAAAAAGTGGTTACTTGGGCCGCGGTCGTTTTAGGGTCGATCAAGTCTGCATCCAGCTGCGTGAGATGATCTAC

>NZ_CP040098|27|27|3064027-3064137|CRISPRCasFinder
CGATCAAGTCTGCATCCAGCTGCGTGAGATGATCTAC	AAAAAAGTGGTTACTTGGGCCGCGGTCGTTTTAGGGT
CGATCAAGTCTGCATCCAGCTGCGTGAGATGATCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425439.1\|3064567_3065761_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380637
NZ_CP040098.1\|WP_137425443.1\|3068832_3069537_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
NZ_CP040098.1\|WP_137425429.1\|3050474_3052028_-\|methylmalonyl-CoA-carboxyltransferase	unknown	unknown	gnl\|CDD\|130187
NZ_CP040098.1\|WP_137425862.1\|3076186_3076384_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425430.1\|3052157_3053648_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP040098.1\|WP_170180378.1\|3058143_3058305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425433.1\|3056828_3057830_-\|P1-family-peptidase	unknown	unknown	gnl\|CDD\|239070
NZ_CP040098.1\|WP_170180379.1\|3076843_3077062_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425437.1\|3062681_3063989_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NZ_CP040098.1\|WP_137425442.1\|3068107_3068827_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
NZ_CP040098.1\|WP_137425441.1\|3067124_3068111_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NZ_CP040098.1\|WP_137425444.1\|3069682_3070363_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341361
NZ_CP040098.1\|WP_137425434.1\|3058285_3059167_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP040098.1\|WP_137425431.1\|3053650_3055258_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NZ_CP040098.1\|WP_137425432.1\|3055232_3056627_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP040098.1\|WP_137425446.1\|3073866_3075552_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP040098.1\|WP_137425440.1\|3066232_3067108_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NZ_CP040098.1\|WP_137425436.1\|3059656_3062158_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|224055
NZ_CP040098.1\|WP_137425445.1\|3071448_3073185_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP040098.1\|WP_137425435.1\|3059148_3059676_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425439.1\|3064567_3065761_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380637	cd19982, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.	8.19262e-144
NZ_CP040098.1\|WP_137425443.1\|3068832_3069537_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	1.81112e-118
NZ_CP040098.1\|WP_137425430.1\|3052157_3053648_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP040098.1\|WP_137425437.1\|3062681_3063989_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	2.71365e-76
NZ_CP040098.1\|WP_137425433.1\|3056828_3057830_-\|P1-family-peptidase	gnl\|CDD\|239070	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	8.16704e-94
NZ_CP040098.1\|WP_137425429.1\|3050474_3052028_-\|methylmalonyl-CoA-carboxyltransferase	gnl\|CDD\|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP040098.1\|WP_137425442.1\|3068107_3068827_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.58355e-113
NZ_CP040098.1\|WP_137425441.1\|3067124_3068111_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.70264e-73
NZ_CP040098.1\|WP_137425444.1\|3069682_3070363_-\|CBS-domain-containing-protein	gnl\|CDD\|341361	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain. The putative Acetoin Utilization Protein (Acub) from Vibrio Cholerae contains a CBS pair domain. The acetoin utilization protein plays a role in growth and sporulation on acetoin or butanediol for use as a carbon source. Acetoin is an important physiological metabolite excreted by many microorganisms. It is used as an external energy store by a number of fermentive bacteria. Acetoin is produced by the decarboxylation of alpha-acetolactate. Once superior carbon sources are exhausted, and the culture enters stationary phase, acetoin can be utilised in order to maintain the culture density. The conversion of acetoin into acetyl-CoA or 2,3-butanediol is catalysed by the acetoin dehydrogenase complex and acetoin reductase/2,3-butanediol dehydrogenase, respectively. Acetoin utilization proteins, acetylpolyamine amidohydrolases, and histone deacetylases are members of an ancient protein superfamily.This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT (aspartate kinase/chorismate mutase/TyrA) domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	7.47522e-53
NZ_CP040098.1\|WP_137425434.1\|3058285_3059167_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.0745e-28
NZ_CP040098.1\|WP_137425431.1\|3053650_3055258_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	4.37998e-71
NZ_CP040098.1\|WP_137425432.1\|3055232_3056627_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP040098.1\|WP_137425446.1\|3073866_3075552_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.00120941
NZ_CP040098.1\|WP_137425440.1\|3066232_3067108_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	2.03205e-67
NZ_CP040098.1\|WP_137425436.1\|3059656_3062158_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.05387e-71
NZ_CP040098.1\|WP_137425445.1\|3071448_3073185_-\|hypothetical-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	4.82699e-55
NZ_CP040098.1\|WP_137425435.1\|3059148_3059676_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.40817e-23

>NZ_CP040098.1|WP_137425437.1|3062681_3063989_+|(Fe-S)-binding-protein
MARMRQLARLIGELEDQLIVCMRCGMCQAVCPLYEETGREADVARGKLALLDGLSREMFKDPKGVSESLNRCLLCGSCEANCPSGVRVLDIFLKARAILAGYMGLSPVKKAILRGILARPAFFDSLMEWGARFQTVFTKPVDDALGTSCARFLSPVLADRRIKPLAAVPFHAKVPERDAPAGRSSLKVAFFVGCLIDKIFPEVAETVLRVLDHHGVGVFLPRNQACCGIPAASSGDTATFRKLVSHNLERFDAGRFDYLVTACATCTFTIRKIWPLLLEDADPETKARAAAVSSKTLDIHQFLAAHIQDVPPAAEPLEDAAPVVTYHDPCHLRKSLGVFVEPRRLIQANPNYRFREMPEADRCCGLGGSFGLEHYDLSSSIGKRKRNSIIETGCAVVATGCPACMIQLHDVLSRSGDRIAVRHAIQIYGEILDSS
>NZ_CP040098.1|WP_137425436.1|3059656_3062158_-|ABC-transporter-ATP-binding-protein/permease
MESKRSLFSWALSRYRGLQLLLLVLIVCTIFFRVFPLEMQKRIVNVAIRFRDVNSLFLYCGLYLGAVVLAGLLKYVINVLQGYIGQKILNEMRTTLYEKILRLPLPFFRKTPPGMVISSLTSEMATIGDFLGSAVAVPVVSILTLLAFAGYMFYLNSLLAILSLSIYPFEVLIIPFLQKKVNQLNSERINENRSLSNAVGEAVSGIHEIHGNAGFPIENEKVSLYSERLLRLRHRINVFKYLTKFVNNFFQSLGPFLLFLVGGYLAIQGRFNLGELVAFLSAYEKLYDPWKELMDYYQSLQDSRVRYRRIMEAFDVEPEFALKPADREPLKLEGRIEVQDVSYEVDGNIRLLDQISLELQPGERLALVGLSGSGKSTLAMVMGQLYNYNRGHVLVDGRELKELSKLDVSRNMSFVSQHPFIFDGTIRENIVYACRSLMLSINGGGEAGYRFLPDEREILELVERVGLTEDVLKFGLNRVVTRECCGDLAEKLVVVRHVFHKRWGRELEDVVEFFQEDRYHQYSTVAANLIYGFSNRDDTAFERLAANKRFVAFLKRLGLYGPLLDLGVDVATQTVALLRDLKEDPFFFEQSPISRDEIDAYAEVVDRLGKEDRRVRYRDDEQAFLKLALLFIPARHKMAALPQSLRNAVLKARPELREYYRKEDPEAFTFVNVSKYVHIWSLLENILFGRIKDESTHAQERIVKLVVDLLKAEGLYDAVLAGGLEFQVGSRGDRLSGGQKQKVALARALLKAPTILILDEATASLDMASQGRIQQYLDTNLRGKSTLVNVVHRLELIRDYEKIAVMKAGRIVEMGRYDELMKQKGLLYELVHG
>NZ_CP040098.1|WP_137425435.1|3059148_3059676_-|Crp/Fnr-family-transcriptional-regulator
MNSSTDERLCDFPQGGKGDYRCELEANLAILRNTPAFSGLPLERLKLYAFLCKRYRYRAGEFLFHQGDKDDRGYIIARGRTQVIREYKDHSYILSELHEGDFFGGLALLADIKRLFSVRAVTELEVVALDRESFRKILAQFPETSIKVLEVMIQRIAQMEERLLEKHVHECTYQS
>NZ_CP040098.1|WP_137425434.1|3058285_3059167_-|ferritin-like-domain-containing-protein
MHVPVVRMPEASMDSARQPVSVKTIFADELEGYLRGLREEDFVLVDVREPEEYKAGHIPGARLIPLREIEQRLHELDPRKEVILYCSVGGRSRAAAAFIADSGLSPRAVTNLKGGYLAWDGKPLQGFPRTRAFRKAATPAEILENAVDLEKGAWRFYAAVVRRFPDSPFARAAETLTGMERAHARVAFEYLKKASGDRSWPPFDAYFDVLSGELLEGGEPLEEALKRLETLPLNRCSAFAELALDIESKAYDLYRNLAAELRDPEAQRAFLALAEQEKGHLRLLARVFNKCGD
>NZ_CP040098.1|WP_170180378.1|3058143_3058305_+|hypothetical-protein
MGIEAGASAQLCSQAGAWEQEEEAGAWEQEEEAGAWEQEEDSFRSSRFNRRTC
>NZ_CP040098.1|WP_137425433.1|3056828_3057830_-|P1-family-peptidase
MIGNDTLTAVGNLMVGHAEHPGARTGCTVILSRGGAIAGVDVRGGAPGTYGTDSLQPINLVDRIHGLFFTGGSAFGLSVADGVRRFLKERAIGFDSAYGIIPIVAGAVIFDLGVNAGGPHPDADLGRQACENASDGPVAEGCVGAGAGATVGKLHGLDRSMKSGLGCALIEVPTGVKVGALMVVNAFGDVVDPLSGRPIAGCRDSAEGSRLVGTDAEIRRFKRLRGFSAGENTVVGVVATNVAFTKTELTKVAQMAQDGLARTVSPSHTLYDGDAVFALSCGDLTGVEVTVVGSLAAQAAAEAILRGVRRAEGRGAIPAVRDLFPEEGIRDRH
>NZ_CP040098.1|WP_137425432.1|3055232_3056627_-|replication-associated-recombination-protein-A
MSDQLNLFRNGDSTHPAFAPLAERMRPRSLDEFVGQSHLTGEGKILHRLIHEGPFQSLIFWGPPGCGKTTLARLIARRGDANLVSLSAVTAGTREIRAAVDEALAAWSRSRKRTWLFMDEIHRLNKAQQDALLPHVEKGTVTLLGATTENPSFEIIRPLLSRSRVLVLEPLAPEELRAIVRRTLEDRERGLGDFPAEMDDNAWALLLEGSGGDARVALNALELAVLTTPPDSGGVRRVDGDAMREALQRSAVHYDKAGEEHFNLISALHKSLRGSDPDAGLYWLARMLEAGEDPMYIARRIVRAASEDVGLADPFALVQALSAQQAYQFLGSPEGDLALAQAVVYVALAPKSNSLYTAYKAARDTARRTGAVPVPFHLRNAPTSLMKRLGYARDYQYPHDSPEGWVPERYLPEPVGNEVFYTPKPWGWEGKWRELLEKRRRIVRGGGNRKQTARDHIEDQPVES
>NZ_CP040098.1|WP_137425431.1|3053650_3055258_-|two-component-sensor-histidine-kinase
MKTSLSKAEPPHPWKSGAGSLREETAREAPGDAWKGPLTRPVDVSKPPRSNLSAEPIKRFRLVKYLSVSSLIVFLVGTFFLSWFLSNRARAILLKKSEQYALLVAENLNHQVFFEFTLPTLMAEGEIRLSREHQYSRLHRVVQNAIRGFAVQRVNIYDPEQVLTYSTSPDQLGKKMELGEHFHRALRGESVSILEGPETTFLGFAWRNEAWQLKTYLPMWEERPMSWKRGRVLGVFEIIQDISSDYETIHRFQVIIVSSVLIFVSLLFAALLIIGRRAEVILTARTRERLRLEEELHQAERLAALGEMIAGVSHEIRNPLGIIRSTAEILASKAENERQSRLAGIVVEEATRLNNIVTQFLDFARPKTLEPAVCRIEEIIDRILEVFEPECQKRGIRVERSYQTGQYKLEADANLLYRALVNLVSNATQAMPEGGVLRLESALVMTDSRSEPAVEVRVSDTGAGITPEIRHKIFNPFFTTREKGTGLGLAIVRTIVDSHCGTLDVESEPGRGTVFVLRLPLRRPHPGGYEDEATP
>NZ_CP040098.1|WP_137425430.1|3052157_3053648_-|sigma-54-interacting-transcriptional-regulator
MANILIVDDERNYLLVLDDLLTDEGYSVITAESAERGLEVLREHSVDAVVTDMKMPGMDGMTFLDHVHAADPDLPVIMMTAYGTVEKAVEAMKKGAYDYILKPFENEELKLVVRKAVEHHHLIRRNHDLTQALQERYRFDNIIGKSAPMQRIYDLIERVAPTKATVLITGESGTGKELIARAIHYNSPRKDRSFISVNCGALPENLLESELFGHERGAFSGAVALRKGRFELAHQGTLFLDEISEMSPSLQVKLLRALQEMAFERVGGSETLHVDVRVVAASNRNLKAETTAGRFRSDLYYRLNVVHITLPPLRERPEDIPLLADHFLKKYARETGRENFRIHPEALRYLLDYPWPGNIRELENTIERAVILAAEEVITPRDLPQEIRRPRPSTVEAGSTEPVLSPREPGIAPMPEESDLARRLPHSPHRHRQLRALELVRSLGSVTNRDYSQLNDISERQALRELNEMVDLGVLERIGKGRASRYVLQENRRPTP
>NZ_CP040098.1|WP_137425429.1|3050474_3052028_-|methylmalonyl-CoA-carboxyltransferase
MQTVAEKIKELREREAKIKQMGGDKAIAQQHERGKMTARERLDRFFDPGSFRELDIFVKHRGTLFGLDKMDIPADGVITGYGTVNGRQVFAFFQDFTARAGTLGEMHSKKICKVMDLALKAGKPFVGFNDSGGARIQEGVDALSGYGQIFYRNAIASGVVPQISAIMGPCAGGAVYSPAMTDFVFMVKNTSYMFITGPDVIKSVLGEEISQEELGGAMAHSSKSGVAHFACDSDAHAIDQIKRLLSFLPDNNMEDPPIVDTGDDPNRQDAALDSLLPDNPMGAYDMKDVIRAIVDNGDFMEVHQNYAMNMIVGLARLNGRSIGIIANQPKVLAGCLDVDCSDKATRFIRFCDAFNIPLLTLADVPGYLPGKQQEWGGIIRHGAKLLWCYSEATVPKVTLIVRKDYGGSYLAMCAKDLGADIVLAWPTAEIAVMGAEGAANIIFRKEIKEADDPTAKRKEKIEEYRSLLYNPYIAASRGYIDGVIVPSETRPRLADAFRMLATKRQALPPKKHGNIPT
>NZ_CP040098.1|WP_137425439.1|3064567_3065761_+|ABC-transporter-substrate-binding-protein
MRKLLCAVLCLSFLCVFGNVLAWGEETLRVGIILPLTGAKANFGEIEKLSFDMALKEINDAGGINGKKLEFLFEDDTGRPEVARSAAEKLINKDKVLMLGGGYGSSETFAIAGVAQQNRIPFLVNTGSDDKITEQGWDYVFRLNPPVSEYPKALESFLVEVVKPKTAAILYENTNFGSSGARKFKEICQRLGIQVVVEEGYEHGGVDFKPILIKVKDKNPDLIYMISYVMDAALLMRQSMELRVKPKLFVGGGAGFTLPEFPKNAGKAAEKVFSATLWYQTLKYPGALDYYNKFVATYKKDTEYHGAEAYASAYVIADALERAKSTSRDDIRKAMAETDMMTVFGPVKFIAYDKKTNQNRLPTYLVQWIDGRLELVWPKELATKPYVYPIDWESVWR
>NZ_CP040098.1|WP_137425440.1|3066232_3067108_+|branched-chain-amino-acid-ABC-transporter-permease
MSVFVQTVVAGTLMGGIYALIGIGMTLIMGVMKIINLAHGQLMMVAMYITYVLYEYLHVDPYLALVVTMPALFVLGALIQRYLLNPLIKVEAILPENQVLMTVGIGMVLTEIARMIFHSDYKSVRPAYTSISLYAGPIAFNLPMCIAFGIAVLLTIGLFIFLLKTDTGKSVRATAQNKEAALLLGVNADRIMVFTYGLGAALVAAAGTLLLPIYYLFPDLGGAFTLKAFVITILGGLGSTVGAIVGGVVLGVSESLGATYVSMGLKDAVGMVIFLLVLIFLPGGLKRLTKI
>NZ_CP040098.1|WP_137425441.1|3067124_3068111_+|branched-chain-amino-acid-ABC-transporter-permease
MKAIRWQIALIVAASLIFPWVVRSEYYLHVIILAYIWVIIGSSWNLLAGFTGQVSFGHAIFFGIGAYTAGLCATKLGVSAWWGVIFGGPMASLIGFIIGWICFRLRGPYFALATIAVGEIFRLIAVVWRSFTGGMEGILLMQTFRSKLPYYYLALFLSLTCILAIHLAMRSKWGYYFVAIREDQDAAESMGVSAFRYKSLSLIISSFFTGVAGAFYMNYMAFIDPEVVFSLHHISIMAILVGIIGGVGTLWGPPLGAFIMVLLQETFRSSFFGLAPRWVSEVHVLVFGLLVIFVILYMANGVVGDWDKIRRLWSRKAESVAATAGKGS
>NZ_CP040098.1|WP_137425442.1|3068107_3068827_+|ABC-transporter-ATP-binding-protein
MSTPFFESHELTKDFGGLRAVNGLSFHVNEGEIFGLIGPNGSGKTTVFNLIGGYYPITSGSLRFQGTTLNSLPTWKICKLGIGRTFQVMKPLRRMTVLENVMTAAFNRTDVIAESRKKALEVLEFCGLAHRKDMTAKGLPIGYRKRLEIARALATEPKLLLLDETMAGLTPQEQAEGVTLIRKIRDSGITIIIVEHIMRVIMSLCDRILCINYGQRIAEGSPQEVANHPAVIEAYLGKE
>NZ_CP040098.1|WP_137425443.1|3068832_3069537_+|ABC-transporter-ATP-binding-protein
MLQVEQLDVFYGDIQVLWDISFHVHNNEFVVLVGSNGAGKSTLMKTISGLVRPKRGSIRFGDVRLDQLKPYEIIKFGLSHIPEGRQLFPEMSVLENLEMGALNPEAKAKRKETLEWVFSLFPRLKERTGQMAGTLSGGEQQMCAIARGLMSLPRMVLLDEPSLGLSPRLTQEIFRLVQEIHHKGMTILMVEQNVKQTLAICDRGYVLENGRIVLEGRGQDLLEDQRVKEAFLGL
>NZ_CP040098.1|WP_137425444.1|3069682_3070363_-|CBS-domain-containing-protein
MLVKECMSTPAITIDSEEPMSNAVNLMKEKGIRILPVLKKGQLVGVLSDSDIKRASPSDATLLEVHELLYLLARIKVRDIMNKNPVTIPMHFTVEEAAEKLLNYGISGAPVVDDRGDVVGVITQADMFKVLISLSGLQHRGVQFAFEIEDRPGSIKELTDVMRAAGGRIASILGTYDRTPAGNRHVYIRAYNLDRARLDVLKETLKKKAKMLYVVDHSENKREIYI
>NZ_CP040098.1|WP_137425445.1|3071448_3073185_-|hypothetical-protein
MGWKKLTIGKTIILCFGTFWVLLAVLCLLTIKRISELTDTTRLAVTGQKAVAAVARFEARQPRGNGTSLGGREDTTERQKTGATDVEASGLFSNEWLSQEERLELERIIPPLSGLLKELDGLHGFAGKGDNAEAQRIISLAQKIEKTINENIPSEKMVADKARRLGWDVTAMIGLVIVFTMLPAFLTSRKINGLLKGISHRMDAAAGDIEATSYKVSTASKSLAGGTTEQASALEQTTASLAHMASMIKKNAVNAARADQLVSETNLSVREATQSMAKLITAMADIEEATKETQEIVGTIDELAFQTNLLALNAAVEAARAGEAGPGFAVVAEEVRNLAIRSGCAARRTTELIEGTDMKIKNGSEVVGLTSRVFSEIASNTAIIKDLAVEIATASRQQSEEVDQITGAVTEMEKVTQENAANAEDLASVSEALHKQGDRLRRIIGDLLTLVHGGSHLSEDALKSIKAELRKLARDPRLKELNEMTHRKILAEWIRDHPNIEAVYSNRADGSFIYSEPPAGLSNAAVRPWWQRAMAEEEYISPVYISAITQKPCCTLSIPLYNGNGKIGGVLGIDLRVG
>NZ_CP040098.1|WP_137425446.1|3073866_3075552_-|transposase
MNPIAEASQKIIERLSWCTASRDQAGIASDLAEREEISEVYGLGEAGLFDEFFYFLEELGIMKLFMGLDPNRNQRSSNIKFPAVILIYLMRIVAGLRFFWHINPVILSSQSLMRLVGFNGREVREGTSARGRKKPVAEPCDDSDPSRDDPRPTPIRGPYCPDSIAAYIQAIAASALERLFNGVVTILAAHSFFPKKIHALMDSSEIQSTERCRGCGKVSKEKAPELRRRKKRIRKVLETVFGFKIWVVWDPASRLPIALRFATIEVSDVDFAGEVVQQAVTNLADHATIVSLAMDRGFIDGKFLWWLHDTMHITFYIPAKTNMDVYADAVSLTAGGIRETREKARSVGKGSNKTTVVDHWDVVGIEALTSAGFYGELGSGSHQNRKDFTANPLNAVVVLDDPFKRNNPDSDTLVILTNGSVQKPLEVYDAYDARSEIENALFREAKQAWFIERPARNNADAFRSHVYLTVLMMALTAAFQTWMDQQDKLAQKGQETGIRKFREKVRQENGNKLIVFEGDRYAIFDAYEVFILCGTNVRMPTGVPESISKRDILLKYGALRE
>NZ_CP040098.1|WP_137425862.1|3076186_3076384_-|hypothetical-protein
MPILHPNDPDFCEIGCPICVAARKGNKVAKFFQNIALAVTFGGCWWGRARKRKYGVPPDQPVPPK
>NZ_CP040098.1|WP_170180379.1|3076843_3077062_+|hypothetical-protein
MALVRAVRREFEKIPDPRKGRPQISFADAAMSAFAMFSLKDPSHPAFEKHWSARDHNLHALYHIFYIEVERG

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Crispr_ID: NZ_CP040098_28

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_28

3140803-3149117

TypeIII

Consensus_repeat	Method
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CRISPRCasFinder
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CRT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	PILER-CR
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	PILER-CR

113 spacers

csm6,csm3gr7,csx19,csx10gr5,cas10,csx1,cas2,cas1

The CRISPR arrays of NZ_CP040098_28

>merge|NZ_CP040098|28|3140803-3149117|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GCCACAATCCCCTCAAATCGGGGCCGTCCTTCGGACGAAACTGCCATCAGCAAGCTCCAGCAGGGGATCCCTGTCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGACTTCACAGCGGAGTTGGAGGCGGTGCGGGCAAAGCATCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGACCATATCGACGGTGACGGCTTGAACAATCAGGTCTCAATCCCCCTCAAATCGGGGCCGTCCTTCGGACGCTCTGTCCGTCAACATCAATTGGAGGTGCCCATGCAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGAATCGAATCAAGTACCGCGGAGGGTTCGATCGAATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCTCAGGGACCTGTGGCAACAAATTCCAGCGACGGTGTCGCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGACTCAGCAACCCTGCTCGGGCTTTTGCTCGAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGCCAGGAGCATTCCAGCACGCACTTGGGACAGGCATTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAATTCTTAACACCCGATATATCCAATGGGAACTTCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACACAGCCTCACTGATGACCAGAGGAAGATAGTTGAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACACAGCCTCACTGATGACCAGAGGAAGATAGTTGAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAAGCTGAAGTTCGAGAATCAGCGCCTGCGGCTGGAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCAAGTGTGGGATGTGTTGCTGCTCGGATGCCTACATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCTTGAGACTTTTCTTATCCCGGCATCCTCTGTCAATGAATTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCATGCTGGAGATAATCGAGACTCCAGCGCCGCCTAAGGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCTAAGAGGGCGGCACCTAAGAAGGCGCCGCCTAAGAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCTCCCCTGGAGGAATGATAAAATTTAATAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCTGCTTGACATCGAAGATTGGCTCCGGGAAGAAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGAATTTCTAATCGCTTTGGAGCATAGCTTGCTTCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGCAAGACTTACATCCGTAATCTGGAACGTAGGATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGATCAGCTACGGAAAGAGTATGCTCTGGCCATAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCGAACCGGAAGGGCGGGGCTTACCACCCCGCGACAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGGCGCCTAAGAGGGCGCCTAAGAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACACAGGGCGCCTTTGGGCACATTGCTTTCCGGGGAAGGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCATAGACTAACCTGCTATATCAAGGTCCCCGGCAGGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAAAACGCAGAGGTTCACCGCTTACTACGAAAGGACAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGAGAGCATCATGAACAAAATAGCAAGGCTCTTTCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGATCACGGGGACGAGGTCCGCTACTACGGCACCACGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCGCGGCGATACAGAGCAGAGTAATAAGAAGAAACAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACATATGGATAAGAGAATCAAGGAAATCGTGGCATTTCTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACACAGGCAATTACGGCGACGGTTATCACGTGGTAGCTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTTACTGCGGATAGATGTTATACGGACCCCGATACGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGTCTCACGTTGGCGGGAGGTTGACGTACGGAACCTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGAGGACGATCCCATGGGTTTGACCAGAGTAGTCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAGGATGACCGCAAGGCCATTCTGCAAGACGAGATAACGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACATTGCACTGGAGGAGATTCCCACTCCGCCCCCGTTTTTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCTATGGCTGTAGCAATTCAGACGAGAATCCCTGTTTTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCCCCCGGAGTTTATCGCTGATGCTTGGGAGGCGGTGTCCCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGGAGTTATGCTTAGATTCAAATTTGGATTGGCATATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCCCGATTTCTTCGCATATCTGGAAGACTCACGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCCCGATTTCTTCGCATATCTGGAAGACTCACGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCGTCCTGGCTAGAATGCGGCGGCGGACGAGCCTACCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAAATCCCGGCCGGCGCAACCTTGGGAATTCTATCCGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGAGACATGGCAAAGGCAAAGAAGACTTCGGGTTCTGGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACACGAAGAGAGAGACGGTGGAGATTCCCCGTCCCGACGGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCAGGAAAAACCCAACGGGCGGAGTACCTGACTCGTTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAAGAGCATTGCTCAGTTGCTTGGAACACCCTGGCCTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGAAGGCCCCGATTCCCTCGGGGCCTATCGAGGCTCCCTTTGAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTAACCAGGAGAGAGCGATGCGGTTTGAAAAAATCTCTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCTTCTCGATGACGATTTACTGGACGAACTTTGATTTTTTTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCAATGGCAATATGCTGGAGATTTTAGAATCTCCAGCAAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTTGAGAAGATGAGATAAGGCGACCCATTGTGGCCTAAACAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCGTGGTGTCCGATTTCATATGGACCCTCCGAGCTTATTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGCCCAAAAAGGCGCCGCCTAAGAGGGCGCCTTCGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGGAGGATATGATACGGAAAGGTGGCCTTACCGCCTTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCTATCCGGGGCCCACAAGGGCCTCCGGATCAGACTCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCTTAACTGCGTTGAATGATCTGAAGGGTTCCATCGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACACTAACCAGGAGGAGAACATGAAGTTGGAGAAAATATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACACTCCGGATCCGGCTCACGGAACCCATGCGGGCCCCGATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCTCCGGATCAGGCTCACCGAGCCCTTAAAGGCCCCGATACCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGAGGGATACTAACTCCTCCTTCATTGATTTCATCGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCAAACTAGACTTATCGCTCATTCGGGAGGAGAAGAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGCGAGGGGGAGATGGACCCCACCTCCCTTCGCCGCACCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAACACTAATCTCCACCGCACCGTCAACGCCGCTCCAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACATTACATCGGCTTTTCGGCCTGACCGCCGAAAACGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCAGCCGGCTGCACCCTAGGAATCGAATCGGGGGCCCAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCAAAAAGTGATTTTTTCAATCTCTAATGTCGAAATCACGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTTGATCGAGATCGAATAGAGGAAAGAACCCAGCCCTCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGAGGCGATGGCCCGAAGATAGTTCCTCTCCCGATAAGCGGACCGCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGAAAAAACCGCAAGACTTTTCCGAACCACGGACGGCTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCAAGGTGGAACGAAAATCCGCAAACTGGCGGTCCCAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGGGCTGGATGGGGTACTTCGTCAGTGTCTTTATCAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTAAGCCCAAAGGAGTTGCCCGTGGGGCATAGGGCTCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAACAATAAGGAGGAGTGCGACTTTTTCGCGGACGATGTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAATATCGCCAACGGCATCGATAGTGGTACCGAGCACGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCAGACAAACAAATCTTTAGACTGGTCTCCGTGAGTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGAGTTGATCCCAAGGCCTTCGTCATAGCGGAGCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCCTGGTGGCGGCTAAGGCTGCCCTAAACGTATAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGCATGCTCCAAAGCAAGACAGGCAGGGCGGGGCTGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGCAGTGAAGCACCTGAGACGGACCGTAAGCATGTAGTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCGGCGCGGGTACTCCGTAGACTCCGTCGAGGAGTTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACACATCACGGACAAGCTCAAGAGCATCATTGAACGGGGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAAGGGTCGCAGCCGGGAGACCGGCTACGACTTCTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGTGGATGGCGCTTACAGGAGTGCCCGTTCAAGGACGACAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCTAGGGGGTGGGGGCTCCGGCCCCCGCCCTTTTTTTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGGAGGAGTCTCTGGGCATGGTCTACTGCCCAGTGTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAAGGAGGAATGACGGGTGGCCGTAGGCATCGAATTAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTACCTTCTTTGATGGCCAAGACGTGTCTGTCGAGGAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGACAGCTTCATTGAGCAAAGCTACGAAGGCATAATCGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCTCATCACTTCTGGCGACATAGTCGCTGATACTCGCTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGAGAAATAAATGAAACTAAGGGAAATGCTCCAGGAAAACCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGTATTTCTTGGCAAAATAATGTTGGCAGGAAGAGTTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGATTTCGATAGGCTTGCTGATAGGTCGACGATTGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCGCGTATCAAGGATATGGTCGTGGATTGGACCTTGACTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCAACCGGTTCCTGGTATAAGGGCGTTCTTCATGCAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCAGATAGGAATCACTGCAACCCTTCGACTGCTTAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGAAATTCCTGATGGGATGGATGTCGATCACGTGAACGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACATCTCCGGGCTCAAATAATGTAGAACAGAATCAACATAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAATCTTGACAGACGCCGGCGCATACTTTTTCATGCCCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGATTTCATCGTTACGAATGGCGCGTGGGATTTGCTGGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCTGAGCCCGAGAAGGGTTCAGGGAAGAGTCGTACCCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAGCATGCCTATACCGACAGTTTATCTAAACCTCAGAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGCTGTCCTGGCTGATGCCGCTAAGGAGCGGCGTCGGTTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAGAAACGGCCATATCTAAGCAGCAGCCGGCTGAGATTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCTACGGGGGGCAACCAACAGGTTTTCCTCAATGGATTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGAATATCTAAGGCCTATTGGAAGATGTGGAATGTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGTACCCGAGGGCCTTGTTGGCTTTCGGACTTGCCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAAACAGTCGGTCTTTCGACACGTACAGTTCCGACCCTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAAGAAGACCGAGAGAGGCGGCGTAGCCGCAGTGATCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTCGTCGAACTACCGGAGGACCTAAGGGGACGGTGGGGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACATAGATGTTAAGGATATCAAGCAGTTTGTGATCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC

>NZ_CP040098|28|28|3140803-3149117|CRISPRCasFinder
GCCACAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAAACTGCCATCAGCAAGCTCCAGCAGGGGATCCCT
GTCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGAC	TTCACAGCGGAGTTGGAGGCGGTGCGGGCAAAGCATC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGACCATATCGACGGTGACGGCTTGAACAATCAGG
TCTCAATCCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCTCTGTCCGTCAACATCAATTGGAGGTGCCCATGCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAATCGAATCAAGTACCGCGGAGGGTTCGATCGAAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCTCAGGGACCTGTGGCAACAAATTCCAGCGACGGTGTCGC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GACTCAGCAACCCTGCTCGGGCTTTTGCTCGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCCAGGAGCATTCCAGCACGCACTTGGGACAGGCATTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATTCTTAACACCCGATATATCCAATGGGAACTTCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACAGCCTCACTGATGACCAGAGGAAGATAGTTGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACAGCCTCACTGATGACCAGAGGAAGATAGTTGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGCTGAAGTTCGAGAATCAGCGCCTGCGGCTGGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAAGTGTGGGATGTGTTGCTGCTCGGATGCCTACAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTTGAGACTTTTCTTATCCCGGCATCCTCTGTCAATGAATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CATGCTGGAGATAATCGAGACTCCAGCGCCGCCTAAGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCTAAGAGGGCGGCACCTAAGAAGGCGCCGCCTAAGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATATTTCTCCCCTGGAGGAATGATAAAATTTAATAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCTGCTTGACATCGAAGATTGGCTCCGGGAAGAAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAATTTCTAATCGCTTTGGAGCATAGCTTGCTTCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGGAGCAAGACTTACATCCGTAATCTGGAACGTAGGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GATCAGCTACGGAAAGAGTATGCTCTGGCCATAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGAACCGGAAGGGCGGGGCTTACCACCCCGCGACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGGAGGCGCCTAAGAGGGCGCCTAAGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACAGGGCGCCTTTGGGCACATTGCTTTCCGGGGAAGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CATAGACTAACCTGCTATATCAAGGTCCCCGGCAGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAAACGCAGAGGTTCACCGCTTACTACGAAAGGACAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAGAGCATCATGAACAAAATAGCAAGGCTCTTTCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGATCACGGGGACGAGGTCCGCTACTACGGCACCACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGCGGCGATACAGAGCAGAGTAATAAGAAGAAACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATATGGATAAGAGAATCAAGGAAATCGTGGCATTTCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACAGGCAATTACGGCGACGGTTATCACGTGGTAGCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTACTGCGGATAGATGTTATACGGACCCCGATACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGTCTCACGTTGGCGGGAGGTTGACGTACGGAACCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGAGGACGATCCCATGGGTTTGACCAGAGTAGTCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGGATGACCGCAAGGCCATTCTGCAAGACGAGATAAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATTGCACTGGAGGAGATTCCCACTCCGCCCCCGTTTTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTATGGCTGTAGCAATTCAGACGAGAATCCCTGTTTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCCCCCGGAGTTTATCGCTGATGCTTGGGAGGCGGTGTCCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGGAGTTATGCTTAGATTCAAATTTGGATTGGCATAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATATTTCCCGATTTCTTCGCATATCTGGAAGACTCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATATTTCCCGATTTCTTCGCATATCTGGAAGACTCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGTCCTGGCTAGAATGCGGCGGCGGACGAGCCTACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAATCCCGGCCGGCGCAACCTTGGGAATTCTATCCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGGAGAGACATGGCAAAGGCAAAGAAGACTTCGGGTTCTGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACGAAGAGAGAGACGGTGGAGATTCCCCGTCCCGACGGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAGGAAAAACCCAACGGGCGGAGTACCTGACTCGTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGAGCATTGCTCAGTTGCTTGGAACACCCTGGCCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAAGGCCCCGATTCCCTCGGGGCCTATCGAGGCTCCCTTTGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TAACCAGGAGAGAGCGATGCGGTTTGAAAAAATCTCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTTCTCGATGACGATTTACTGGACGAACTTTGATTTTTTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAATGGCAATATGCTGGAGATTTTAGAATCTCCAGCAAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTGAGAAGATGAGATAAGGCGACCCATTGTGGCCTAAACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGTGGTGTCCGATTTCATATGGACCCTCCGAGCTTATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCCCAAAAAGGCGCCGCCTAAGAGGGCGCCTTCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAGGATATGATACGGAAAGGTGGCCTTACCGCCTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTATCCGGGGCCCACAAGGGCCTCCGGATCAGACTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTTAACTGCGTTGAATGATCTGAAGGGTTCCATCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACTAACCAGGAGGAGAACATGAAGTTGGAGAAAATAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACTCCGGATCCGGCTCACGGAACCCATGCGGGCCCCGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTCCGGATCAGGCTCACCGAGCCCTTAAAGGCCCCGATACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAGGGATACTAACTCCTCCTTCATTGATTTCATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAAACTAGACTTATCGCTCATTCGGGAGGAGAAGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCGAGGGGGAGATGGACCCCACCTCCCTTCGCCGCACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AACACTAATCTCCACCGCACCGTCAACGCCGCTCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATTACATCGGCTTTTCGGCCTGACCGCCGAAAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAGCCGGCTGCACCCTAGGAATCGAATCGGGGGCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAAAAAGTGATTTTTTCAATCTCTAATGTCGAAATCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTGATCGAGATCGAATAGAGGAAAGAACCCAGCCCTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAGGCGATGGCCCGAAGATAGTTCCTCTCCCGATAAGCGGACCGC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGAAAAAACCGCAAGACTTTTCCGAACCACGGACGGCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAAGGTGGAACGAAAATCCGCAAACTGGCGGTCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGGGCTGGATGGGGTACTTCGTCAGTGTCTTTATCAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TAAGCCCAAAGGAGTTGCCCGTGGGGCATAGGGCTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AACAATAAGGAGGAGTGCGACTTTTTCGCGGACGATGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATATCGCCAACGGCATCGATAGTGGTACCGAGCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAGACAAACAAATCTTTAGACTGGTCTCCGTGAGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAGTTGATCCCAAGGCCTTCGTCATAGCGGAGCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCCTGGTGGCGGCTAAGGCTGCCCTAAACGTATAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCATGCTCCAAAGCAAGACAGGCAGGGCGGGGCTGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCAGTGAAGCACCTGAGACGGACCGTAAGCATGTAGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGGCGCGGGTACTCCGTAGACTCCGTCGAGGAGTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACATCACGGACAAGCTCAAGAGCATCATTGAACGGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGGGTCGCAGCCGGGAGACCGGCTACGACTTCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GTGGATGGCGCTTACAGGAGTGCCCGTTCAAGGACGACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTAGGGGGTGGGGGCTCCGGCCCCCGCCCTTTTTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAGGAGTCTCTGGGCATGGTCTACTGCCCAGTGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGGAGGAATGACGGGTGGCCGTAGGCATCGAATTAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TACCTTCTTTGATGGCCAAGACGTGTCTGTCGAGGAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GACAGCTTCATTGAGCAAAGCTACGAAGGCATAATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTCATCACTTCTGGCGACATAGTCGCTGATACTCGCTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAGAAATAAATGAAACTAAGGGAAATGCTCCAGGAAAACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGTATTTCTTGGCAAAATAATGTTGGCAGGAAGAGTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGATTTCGATAGGCTTGCTGATAGGTCGACGATTGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGCGTATCAAGGATATGGTCGTGGATTGGACCTTGACTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAACCGGTTCCTGGTATAAGGGCGTTCTTCATGCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAGATAGGAATCACTGCAACCCTTCGACTGCTTAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAAATTCCTGATGGGATGGATGTCGATCACGTGAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATCTCCGGGCTCAAATAATGTAGAACAGAATCAACATA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATCTTGACAGACGCCGGCGCATACTTTTTCATGCCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGATTTCATCGTTACGAATGGCGCGTGGGATTTGCTGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTGAGCCCGAGAAGGGTTCAGGGAAGAGTCGTACCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGCATGCCTATACCGACAGTTTATCTAAACCTCAGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGCTGTCCTGGCTGATGCCGCTAAGGAGCGGCGTCGGTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGAAACGGCCATATCTAAGCAGCAGCCGGCTGAGATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTACGGGGGGCAACCAACAGGTTTTCCTCAATGGATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAATATCTAAGGCCTATTGGAAGATGTGGAATGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GTACCCGAGGGCCTTGTTGGCTTTCGGACTTGCCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAACAGTCGGTCTTTCGACACGTACAGTTCCGACCCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGAAGACCGAGAGAGGCGGCGTAGCCGCAGTGATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGTCGAACTACCGGAGGACCTAAGGGGACGGTGGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATAGATGTTAAGGATATCAAGCAGTTTGTGATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC

>NZ_CP040098|28|2|3140803-3149117|CRT
GCCACAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAAACTGCCATCAGCAAGCTCCAGCAGGGGATCCCT
GTCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGAC	TTCACAGCGGAGTTGGAGGCGGTGCGGGCAAAGCATC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGACCATATCGACGGTGACGGCTTGAACAATCAGG
TCTCAATCCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCTCTGTCCGTCAACATCAATTGGAGGTGCCCATGCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAATCGAATCAAGTACCGCGGAGGGTTCGATCGAAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCTCAGGGACCTGTGGCAACAAATTCCAGCGACGGTGTCGC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GACTCAGCAACCCTGCTCGGGCTTTTGCTCGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCCAGGAGCATTCCAGCACGCACTTGGGACAGGCATTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATTCTTAACACCCGATATATCCAATGGGAACTTCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACAGCCTCACTGATGACCAGAGGAAGATAGTTGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACAGCCTCACTGATGACCAGAGGAAGATAGTTGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGCTGAAGTTCGAGAATCAGCGCCTGCGGCTGGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAAGTGTGGGATGTGTTGCTGCTCGGATGCCTACAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTTGAGACTTTTCTTATCCCGGCATCCTCTGTCAATGAATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CATGCTGGAGATAATCGAGACTCCAGCGCCGCCTAAGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCTAAGAGGGCGGCACCTAAGAAGGCGCCGCCTAAGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATATTTCTCCCCTGGAGGAATGATAAAATTTAATAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCTGCTTGACATCGAAGATTGGCTCCGGGAAGAAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAATTTCTAATCGCTTTGGAGCATAGCTTGCTTCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGGAGCAAGACTTACATCCGTAATCTGGAACGTAGGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GATCAGCTACGGAAAGAGTATGCTCTGGCCATAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGAACCGGAAGGGCGGGGCTTACCACCCCGCGACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGGAGGCGCCTAAGAGGGCGCCTAAGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACAGGGCGCCTTTGGGCACATTGCTTTCCGGGGAAGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CATAGACTAACCTGCTATATCAAGGTCCCCGGCAGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAAACGCAGAGGTTCACCGCTTACTACGAAAGGACAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAGAGCATCATGAACAAAATAGCAAGGCTCTTTCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGATCACGGGGACGAGGTCCGCTACTACGGCACCACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGCGGCGATACAGAGCAGAGTAATAAGAAGAAACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATATGGATAAGAGAATCAAGGAAATCGTGGCATTTCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACAGGCAATTACGGCGACGGTTATCACGTGGTAGCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTACTGCGGATAGATGTTATACGGACCCCGATACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGTCTCACGTTGGCGGGAGGTTGACGTACGGAACCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGAGGACGATCCCATGGGTTTGACCAGAGTAGTCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGGATGACCGCAAGGCCATTCTGCAAGACGAGATAAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATTGCACTGGAGGAGATTCCCACTCCGCCCCCGTTTTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTATGGCTGTAGCAATTCAGACGAGAATCCCTGTTTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCCCCCGGAGTTTATCGCTGATGCTTGGGAGGCGGTGTCCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGGAGTTATGCTTAGATTCAAATTTGGATTGGCATAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATATTTCCCGATTTCTTCGCATATCTGGAAGACTCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATATTTCCCGATTTCTTCGCATATCTGGAAGACTCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGTCCTGGCTAGAATGCGGCGGCGGACGAGCCTACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAATCCCGGCCGGCGCAACCTTGGGAATTCTATCCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGGAGAGACATGGCAAAGGCAAAGAAGACTTCGGGTTCTGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACGAAGAGAGAGACGGTGGAGATTCCCCGTCCCGACGGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAGGAAAAACCCAACGGGCGGAGTACCTGACTCGTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGAGCATTGCTCAGTTGCTTGGAACACCCTGGCCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAAGGCCCCGATTCCCTCGGGGCCTATCGAGGCTCCCTTTGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TAACCAGGAGAGAGCGATGCGGTTTGAAAAAATCTCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTTCTCGATGACGATTTACTGGACGAACTTTGATTTTTTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAATGGCAATATGCTGGAGATTTTAGAATCTCCAGCAAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTGAGAAGATGAGATAAGGCGACCCATTGTGGCCTAAACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGTGGTGTCCGATTTCATATGGACCCTCCGAGCTTATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCCCAAAAAGGCGCCGCCTAAGAGGGCGCCTTCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAGGATATGATACGGAAAGGTGGCCTTACCGCCTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTATCCGGGGCCCACAAGGGCCTCCGGATCAGACTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTTAACTGCGTTGAATGATCTGAAGGGTTCCATCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACTAACCAGGAGGAGAACATGAAGTTGGAGAAAATAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACTCCGGATCCGGCTCACGGAACCCATGCGGGCCCCGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTCCGGATCAGGCTCACCGAGCCCTTAAAGGCCCCGATACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAGGGATACTAACTCCTCCTTCATTGATTTCATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAAACTAGACTTATCGCTCATTCGGGAGGAGAAGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCGAGGGGGAGATGGACCCCACCTCCCTTCGCCGCACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AACACTAATCTCCACCGCACCGTCAACGCCGCTCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATTACATCGGCTTTTCGGCCTGACCGCCGAAAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAGCCGGCTGCACCCTAGGAATCGAATCGGGGGCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAAAAAGTGATTTTTTCAATCTCTAATGTCGAAATCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTGATCGAGATCGAATAGAGGAAAGAACCCAGCCCTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAGGCGATGGCCCGAAGATAGTTCCTCTCCCGATAAGCGGACCGC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGAAAAAACCGCAAGACTTTTCCGAACCACGGACGGCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAAGGTGGAACGAAAATCCGCAAACTGGCGGTCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGGGCTGGATGGGGTACTTCGTCAGTGTCTTTATCAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TAAGCCCAAAGGAGTTGCCCGTGGGGCATAGGGCTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AACAATAAGGAGGAGTGCGACTTTTTCGCGGACGATGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATATCGCCAACGGCATCGATAGTGGTACCGAGCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAGACAAACAAATCTTTAGACTGGTCTCCGTGAGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAGTTGATCCCAAGGCCTTCGTCATAGCGGAGCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCCTGGTGGCGGCTAAGGCTGCCCTAAACGTATAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCATGCTCCAAAGCAAGACAGGCAGGGCGGGGCTGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCAGTGAAGCACCTGAGACGGACCGTAAGCATGTAGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGGCGCGGGTACTCCGTAGACTCCGTCGAGGAGTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACATCACGGACAAGCTCAAGAGCATCATTGAACGGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGGGTCGCAGCCGGGAGACCGGCTACGACTTCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GTGGATGGCGCTTACAGGAGTGCCCGTTCAAGGACGACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTAGGGGGTGGGGGCTCCGGCCCCCGCCCTTTTTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAGGAGTCTCTGGGCATGGTCTACTGCCCAGTGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGGAGGAATGACGGGTGGCCGTAGGCATCGAATTAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TACCTTCTTTGATGGCCAAGACGTGTCTGTCGAGGAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GACAGCTTCATTGAGCAAAGCTACGAAGGCATAATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTCATCACTTCTGGCGACATAGTCGCTGATACTCGCTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAGAAATAAATGAAACTAAGGGAAATGCTCCAGGAAAACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGTATTTCTTGGCAAAATAATGTTGGCAGGAAGAGTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGATTTCGATAGGCTTGCTGATAGGTCGACGATTGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGCGTATCAAGGATATGGTCGTGGATTGGACCTTGACTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAACCGGTTCCTGGTATAAGGGCGTTCTTCATGCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAGATAGGAATCACTGCAACCCTTCGACTGCTTAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAAATTCCTGATGGGATGGATGTCGATCACGTGAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATCTCCGGGCTCAAATAATGTAGAACAGAATCAACATA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATCTTGACAGACGCCGGCGCATACTTTTTCATGCCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGATTTCATCGTTACGAATGGCGCGTGGGATTTGCTGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTGAGCCCGAGAAGGGTTCAGGGAAGAGTCGTACCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGCATGCCTATACCGACAGTTTATCTAAACCTCAGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGCTGTCCTGGCTGATGCCGCTAAGGAGCGGCGTCGGTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGAAACGGCCATATCTAAGCAGCAGCCGGCTGAGATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTACGGGGGGCAACCAACAGGTTTTCCTCAATGGATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAATATCTAAGGCCTATTGGAAGATGTGGAATGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GTACCCGAGGGCCTTGTTGGCTTTCGGACTTGCCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAACAGTCGGTCTTTCGACACGTACAGTTCCGACCCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGAAGACCGAGAGAGGCGGCGTAGCCGCAGTGATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGTCGAACTACCGGAGGACCTAAGGGGACGGTGGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATAGATGTTAAGGATATCAAGCAGTTTGTGATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC

>NZ_CP040098|28|3|3140875-3144189|PILER-CR
GTCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGAC	TTCACAGCGGAGTTGGAGGCGGTGCGGGCAAAGCATC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGACCATATCGACGGTGACGGCTTGAACAATCAGGTCTCAATC
CCCCTCAAATCGGGGCCGTCCTTCGGACGCTCTGTC	CGTCAACATCAATTGGAGGTGCCCATGCAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCGAATCGA	ATCAAGTACCGCGGAGGGTTCGATCGAATGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCTCAGGG	ACCTGTGGCAACAAATTCCAGCGACGGTGTCGCGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGACTCAGC	AACCCTGCTCGGGCTTTTGCTCGAGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGCCAGGAG	CATTCCAGCACGCACTTGGGACAGGCATTAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAATTCTTA	ACACCCGATATATCCAATGGGAACTTCAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACAGCCTC	ACTGATGACCAGAGGAAGATAGTTGAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACAGCCTC	ACTGATGACCAGAGGAAGATAGTTGAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAAGCTGAA	GTTCGAGAATCAGCGCCTGCGGCTGGAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCAAGTGT	GGGATGTGTTGCTGCTCGGATGCCTACATGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCTTGAGAC	TTTTCTTATCCCGGCATCCTCTGTCAATGAATTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCATGCTGG	AGATAATCGAGACTCCAGCGCCGCCTAAGGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCTAAGAG	GGCGGCACCTAAGAAGGCGCCGCCTAAGAGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCT	CCCCTGGAGGAATGATAAAATTTAATAGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCTGCTTG	ACATCGAAGATTGGCTCCGGGAAGAAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGAATTTCT	AATCGCTTTGGAGCATAGCTTGCTTCAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGCAA	GACTTACATCCGTAATCTGGAACGTAGGATGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGATCAGCT	ACGGAAAGAGTATGCTCTGGCCATAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCGAACCG	GAAGGGCGGGGCTTACCACCCCGCGACAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGGCG	CCTAAGAGGGCGCCTAAGAGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACAGGGCG	CCTTTGGGCACATTGCTTTCCGGGGAAGGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCATAGACT	AACCTGCTATATCAAGGTCCCCGGCAGGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAAAACGCA	GAGGTTCACCGCTTACTACGAAAGGACAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGGAGAGCA	TCATGAACAAAATAGCAAGGCTCTTTCAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCGATCACG	GGGACGAGGTCCGCTACTACGGCACCACGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCGCGGCG	ATACAGAGCAGAGTAATAAGAAGAAACAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATATGGAT	AAGAGAATCAAGGAAATCGTGGCATTTCTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACAGGCAA	TTACGGCGACGGTTATCACGTGGTAGCTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACTTACTGCG	GATAGATGTTATACGGACCCCGATACGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGGTCTCAC	GTTGGCGGGAGGTTGACGTACGGAACCTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACTGAGGACG	ATCCCATGGGTTTGACCAGAGTAGTCAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAGGATGAC	CGCAAGGCCATTCTGCAAGACGAGATAACGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATTGCACT	GGAGGAGATTCCCACTCCGCCCCCGTTTTTGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCTATGGCT	GTAGCAATTCAGACGAGAATCCCTGTTTTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCCCCCGG	AGTTTATCGCTGATGCTTGGGAGGCGGTGTCCCGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGGGAGTTA	TGCTTAGATTCAAATTTGGATTGGCATATGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCC	CGATTTCTTCGCATATCTGGAAGACTCACGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCC	CGATTTCTTCGCATATCTGGAAGACTCACGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACTCGTCCTG	GCTAGAATGCGGCGGCGGACGAGCCTACCGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAAATCCCG	GCCGGCGCAACCTTGGGAATTCTATCCGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGAGA	CATGGCAAAGGCAAAGAAGACTTCGGGTTCTGGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACGAAGAG	AGAGACGGTGGAGATTCCCCGTCCCGACGGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACTCAGGAAA	AACCCAACGGGCGGAGTACCTGACTCGTTGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAAGAGCATTGCTCAGTTGCTTGGAACACCCTGGCCTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGAAGGCCCCGATTCCCTCGGGGCCTATCGAGGCTCCCTTTGAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TAACCAGGAGAGAGCGATGCGGTTTGAAAAAATCTCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTTCTCGATGACGATTTACTGGACGAACTTTGATTTTTTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAATGGCAATATGCTGGAGATTTTAGAATCTCCAGCAAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTGAGAAGATGAGATAAGGCGACCCATTGTGGCCTAAACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGTGGTGTCCGATTTCATATGGACCCTCCGAGCTTATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCCCAAAAAGGCGCCGCCTAAGAGGGCGCCTTCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAGGATATGATACGGAAAGGTGGCCTTACCGCCTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTATCCGGGGCCCACAAGGGCCTCCGGATCAGACTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTTAACTGCGTTGAATGATCTGAAGGGTTCCATCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACTAACCAGGAGGAGAACATGAAGTTGGAGAAAATAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACTCCGGATCCGGCTCACGGAACCCATGCGGGCCCCGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTCCGGATCAGGCTCACCGAGCCCTTAAAGGCCCCGATACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAGGGATACTAACTCCTCCTTCATTGATTTCATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAAACTAGACTTATCGCTCATTCGGGAGGAGAAGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCGAGGGGGAGATGGACCCCACCTCCCTTCGCCGCACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AACACTAATCTCCACCGCACCGTCAACGCCGCTCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATTACATCGGCTTTTCGGCCTGACCGCCGAAAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAGCCGGCTGCACCCTAGGAATCGAATCGGGGGCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAAAAAGTGATTTTTTCAATCTCTAATGTCGAAATCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTGATCGAGATCGAATAGAGGAAAGAACCCAGCCCTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAGGCGATGGCCCGAAGATAGTTCCTCTCCCGATAAGCGGACCGC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGAAAAAACCGCAAGACTTTTCCGAACCACGGACGGCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAAGGTGGAACGAAAATCCGCAAACTGGCGGTCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGGGCTGGATGGGGTACTTCGTCAGTGTCTTTATCAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TAAGCCCAAAGGAGTTGCCCGTGGGGCATAGGGCTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AACAATAAGGAGGAGTGCGACTTTTTCGCGGACGATGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATATCGCCAACGGCATCGATAGTGGTACCGAGCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAGACAAACAAATCTTTAGACTGGTCTCCGTGAGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAGTTGATCCCAAGGCCTTCGTCATAGCGGAGCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCCTGGTGGCGGCTAAGGCTGCCCTAAACGTATAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCATGCTCCAAAGCAAGACAGGCAGGGCGGGGCTGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCAGTGAAGCACCTGAGACGGACCGTAAGCATGTAGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGGCGCGGGTACTCCGTAGACTCCGTCGAGGAGTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACATCACGGACAAGCTCAAGAGCATCATTGAACGGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGGGTCGCAGCCGGGAGACCGGCTACGACTTCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GTGGATGGCGCTTACAGGAGTGCCCGTTCAAGGACGACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTAGGGGGTGGGGGCTCCGGCCCCCGCCCTTTTTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAGGAGTCTCTGGGCATGGTCTACTGCCCAGTGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGGAGGAATGACGGGTGGCCGTAGGCATCGAATTAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TACCTTCTTTGATGGCCAAGACGTGTCTGTCGAGGAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GACAGCTTCATTGAGCAAAGCTACGAAGGCATAATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTCATCACTTCTGGCGACATAGTCGCTGATACTCGCTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAGAAATAAATGAAACTAAGGGAAATGCTCCAGGAAAACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGTATTTCTTGGCAAAATAATGTTGGCAGGAAGAGTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGATTTCGATAGGCTTGCTGATAGGTCGACGATTGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGCGTATCAAGGATATGGTCGTGGATTGGACCTTGACTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAACCGGTTCCTGGTATAAGGGCGTTCTTCATGCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAGATAGGAATCACTGCAACCCTTCGACTGCTTAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAAATTCCTGATGGGATGGATGTCGATCACGTGAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATCTCCGGGCTCAAATAATGTAGAACAGAATCAACATA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATCTTGACAGACGCCGGCGCATACTTTTTCATGCCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGATTTCATCGTTACGAATGGCGCGTGGGATTTGCTGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTGAGCCCGAGAAGGGTTCAGGGAAGAGTCGTACCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGCATGCCTATACCGACAGTTTATCTAAACCTCAGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGCTGTCCTGGCTGATGCCGCTAAGGAGCGGCGTCGGTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGAAACGGCCATATCTAAGCAGCAGCCGGCTGAGATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTACGGGGGGCAACCAACAGGTTTTCCTCAATGGATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAATATCTAAGGCCTATTGGAAGATGTGGAATGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GTACCCGAGGGCCTTGTTGGCTTTCGGACTTGCCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAACAGTCGGTCTTTCGACACGTACAGTTCCGACCCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGAAGACCGAGAGAGGCGGCGTAGCCGCAGTGATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGTCGAACTACCGGAGGACCTAAGGGGACGGTGGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATAGATGTTAAGGATATCAAGCAGTTTGTGATCAA


>NZ_CP040098|28|4|3144307-3149117|PILER-CR
	TTCACAGCGGAGTTGGAGGCGGTGCGGGCAAAGCATC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGACCATATCGACGGTGACGGCTTGAACAATCAGGTCTCAATC
CCCCTCAAATCGGGGCCGTCCTTCGGACGCTCTGTC	CGTCAACATCAATTGGAGGTGCCCATGCAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCGAATCGA	ATCAAGTACCGCGGAGGGTTCGATCGAATGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCTCAGGG	ACCTGTGGCAACAAATTCCAGCGACGGTGTCGCGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGACTCAGC	AACCCTGCTCGGGCTTTTGCTCGAGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGCCAGGAG	CATTCCAGCACGCACTTGGGACAGGCATTAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAATTCTTA	ACACCCGATATATCCAATGGGAACTTCAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACAGCCTC	ACTGATGACCAGAGGAAGATAGTTGAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACAGCCTC	ACTGATGACCAGAGGAAGATAGTTGAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAAGCTGAA	GTTCGAGAATCAGCGCCTGCGGCTGGAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCAAGTGT	GGGATGTGTTGCTGCTCGGATGCCTACATGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCTTGAGAC	TTTTCTTATCCCGGCATCCTCTGTCAATGAATTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCATGCTGG	AGATAATCGAGACTCCAGCGCCGCCTAAGGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCTAAGAG	GGCGGCACCTAAGAAGGCGCCGCCTAAGAGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCT	CCCCTGGAGGAATGATAAAATTTAATAGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCTGCTTG	ACATCGAAGATTGGCTCCGGGAAGAAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGAATTTCT	AATCGCTTTGGAGCATAGCTTGCTTCAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGCAA	GACTTACATCCGTAATCTGGAACGTAGGATGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGATCAGCT	ACGGAAAGAGTATGCTCTGGCCATAGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCGAACCG	GAAGGGCGGGGCTTACCACCCCGCGACAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGGCG	CCTAAGAGGGCGCCTAAGAGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACAGGGCG	CCTTTGGGCACATTGCTTTCCGGGGAAGGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCATAGACT	AACCTGCTATATCAAGGTCCCCGGCAGGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAAAACGCA	GAGGTTCACCGCTTACTACGAAAGGACAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGGAGAGCA	TCATGAACAAAATAGCAAGGCTCTTTCAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCGATCACG	GGGACGAGGTCCGCTACTACGGCACCACGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCGCGGCG	ATACAGAGCAGAGTAATAAGAAGAAACAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATATGGAT	AAGAGAATCAAGGAAATCGTGGCATTTCTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACAGGCAA	TTACGGCGACGGTTATCACGTGGTAGCTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACTTACTGCG	GATAGATGTTATACGGACCCCGATACGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGGTCTCAC	GTTGGCGGGAGGTTGACGTACGGAACCTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACTGAGGACG	ATCCCATGGGTTTGACCAGAGTAGTCAAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAGGATGAC	CGCAAGGCCATTCTGCAAGACGAGATAACGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATTGCACT	GGAGGAGATTCCCACTCCGCCCCCGTTTTTGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCTATGGCT	GTAGCAATTCAGACGAGAATCCCTGTTTTGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACCCCCCCGG	AGTTTATCGCTGATGCTTGGGAGGCGGTGTCCCGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACGGGAGTTA	TGCTTAGATTCAAATTTGGATTGGCATATGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCC	CGATTTCTTCGCATATCTGGAAGACTCACGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACATATTTCC	CGATTTCTTCGCATATCTGGAAGACTCACGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACTCGTCCTG	GCTAGAATGCGGCGGCGGACGAGCCTACCGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAAATCCCG	GCCGGCGCAACCTTGGGAATTCTATCCGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAGGAGAGA	CATGGCAAAGGCAAAGAAGACTTCGGGTTCTGGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACACGAAGAG	AGAGACGGTGGAGATTCCCCGTCCCGACGGAGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACTCAGGAAA	AACCCAACGGGCGGAGTACCTGACTCGTTGGTCTCAAT
CCCCTCAAATCGGGGCCGTCCTTCGGACAAGAGCATTGCTCAGTTGCTTGGAACACCCTGGCCTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGAAGGCCCCGATTCCCTCGGGGCCTATCGAGGCTCCCTTTGAGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TAACCAGGAGAGAGCGATGCGGTTTGAAAAAATCTCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTTCTCGATGACGATTTACTGGACGAACTTTGATTTTTTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAATGGCAATATGCTGGAGATTTTAGAATCTCCAGCAAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTGAGAAGATGAGATAAGGCGACCCATTGTGGCCTAAACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGTGGTGTCCGATTTCATATGGACCCTCCGAGCTTATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCCCAAAAAGGCGCCGCCTAAGAGGGCGCCTTCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAGGATATGATACGGAAAGGTGGCCTTACCGCCTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTATCCGGGGCCCACAAGGGCCTCCGGATCAGACTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCACGTTGGGGACGTCTCTCGACCTGGGACCGTATCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTTAACTGCGTTGAATGATCTGAAGGGTTCCATCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACTAACCAGGAGGAGAACATGAAGTTGGAGAAAATAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACTCCGGATCCGGCTCACGGAACCCATGCGGGCCCCGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTCCGGATCAGGCTCACCGAGCCCTTAAAGGCCCCGATACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAGGGATACTAACTCCTCCTTCATTGATTTCATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAAACTAGACTTATCGCTCATTCGGGAGGAGAAGAGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCGAGGGGGAGATGGACCCCACCTCCCTTCGCCGCACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AACACTAATCTCCACCGCACCGTCAACGCCGCTCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATTACATCGGCTTTTCGGCCTGACCGCCGAAAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAGCCGGCTGCACCCTAGGAATCGAATCGGGGGCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAAAAAGTGATTTTTTCAATCTCTAATGTCGAAATCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTGATCGAGATCGAATAGAGGAAAGAACCCAGCCCTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GAGGCGATGGCCCGAAGATAGTTCCTCTCCCGATAAGCGGACCGC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGAAAAAACCGCAAGACTTTTCCGAACCACGGACGGCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAAGGTGGAACGAAAATCCGCAAACTGGCGGTCCCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGGGCTGGATGGGGTACTTCGTCAGTGTCTTTATCAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TAAGCCCAAAGGAGTTGCCCGTGGGGCATAGGGCTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AACAATAAGGAGGAGTGCGACTTTTTCGCGGACGATGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATATCGCCAACGGCATCGATAGTGGTACCGAGCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CAGACAAACAAATCTTTAGACTGGTCTCCGTGAGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAGTTGATCCCAAGGCCTTCGTCATAGCGGAGCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCCTGGTGGCGGCTAAGGCTGCCCTAAACGTATAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCATGCTCCAAAGCAAGACAGGCAGGGCGGGGCTGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCAGTGAAGCACCTGAGACGGACCGTAAGCATGTAGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGGCGCGGGTACTCCGTAGACTCCGTCGAGGAGTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ACATCACGGACAAGCTCAAGAGCATCATTGAACGGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGGGTCGCAGCCGGGAGACCGGCTACGACTTCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GTGGATGGCGCTTACAGGAGTGCCCGTTCAAGGACGACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCTAGGGGGTGGGGGCTCCGGCCCCCGCCCTTTTTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAGGAGTCTCTGGGCATGGTCTACTGCCCAGTGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGGAGGAATGACGGGTGGCCGTAGGCATCGAATTAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TACCTTCTTTGATGGCCAAGACGTGTCTGTCGAGGAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GACAGCTTCATTGAGCAAAGCTACGAAGGCATAATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTCATCACTTCTGGCGACATAGTCGCTGATACTCGCTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAGAAATAAATGAAACTAAGGGAAATGCTCCAGGAAAACC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGTATTTCTTGGCAAAATAATGTTGGCAGGAAGAGTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGATTTCGATAGGCTTGCTGATAGGTCGACGATTGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGCGTATCAAGGATATGGTCGTGGATTGGACCTTGACTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCAACCGGTTCCTGGTATAAGGGCGTTCTTCATGCA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCAGATAGGAATCACTGCAACCCTTCGACTGCTTAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGAAATTCCTGATGGGATGGATGTCGATCACGTGAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATCTCCGGGCTCAAATAATGTAGAACAGAATCAACATA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATCTTGACAGACGCCGGCGCATACTTTTTCATGCCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGATTTCATCGTTACGAATGGCGCGTGGGATTTGCTGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTGAGCCCGAGAAGGGTTCAGGGAAGAGTCGTACCC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGCATGCCTATACCGACAGTTTATCTAAACCTCAGAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGCTGTCCTGGCTGATGCCGCTAAGGAGCGGCGTCGGTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGAAACGGCCATATCTAAGCAGCAGCCGGCTGAGATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CTACGGGGGGCAACCAACAGGTTTTCCTCAATGGATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGAATATCTAAGGCCTATTGGAAGATGTGGAATGTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GTACCCGAGGGCCTTGTTGGCTTTCGGACTTGCCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAACAGTCGGTCTTTCGACACGTACAGTTCCGACCCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AAGAAGACCGAGAGAGGCGGCGTAGCCGCAGTGATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TCGTCGAACTACCGGAGGACCTAAGGGGACGGTGGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	ATAGATGTTAAGGATATCAAGCAGTTTGTGATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425482.1\|3138187_3138367_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP040098.1\|WP_137425493.1\|3157674_3159219_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NZ_CP040098.1\|WP_137425491.1\|3155336_3157013_-\|hypothetical-protein	csx10gr5	cls000715_csx10gr5_CAS-III-D	gnl\|CDD\|131722
NZ_CP040098.1\|WP_170180388.1\|3159230_3160400_-\|DUF1887-family-protein	csx1	mkCas0112_csx1_CAS-III	gnl\|CDD\|312526
NZ_CP040098.1\|WP_137425477.1\|3122174_3122975_-\|chordopoxvirus-fusion-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP040098.1\|WP_137425496.1\|3164371_3165424_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP040098.1\|WP_137425484.1\|3138663_3139080_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425495.1\|3164063_3164342_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP040098.1\|WP_137425486.1\|3139837_3140107_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_170180387.1\|3153859_3155347_-\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|187857
NZ_CP040098.1\|WP_137425492.1\|3157009_3157645_-\|RAMP-superfamily-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NZ_CP040098.1\|WP_137425479.1\|3124467_3125739_-\|2-hydroxyacyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|377594
NZ_CP040098.1\|WP_137425481.1\|3137994_3138138_-\|lmo0937-family-membrane-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425488.1\|3150873_3153267_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_CP040098.1\|WP_137425478.1\|3123694_3124453_-\|3-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|224835
NZ_CP040098.1\|WP_137425480.1\|3137620_3137935_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP040098.1\|WP_137425487.1\|3149775_3150837_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NZ_CP040098.1\|WP_137425485.1\|3139076_3139433_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|367760
NZ_CP040098.1\|WP_137425489.1\|3153266_3153863_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NZ_CP040098.1\|WP_137425483.1\|3138452_3138674_-\|LapA-family-protein	unknown	unknown	gnl\|CDD\|377648

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425482.1\|3138187_3138367_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	3.94534e-08
NZ_CP040098.1\|WP_137425491.1\|3155336_3157013_-\|hypothetical-protein	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	8.74898e-29
NZ_CP040098.1\|WP_170180388.1\|3159230_3160400_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	3.35222e-08
NZ_CP040098.1\|WP_137425477.1\|3122174_3122975_-\|chordopoxvirus-fusion-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.65396e-06
NZ_CP040098.1\|WP_137425496.1\|3164371_3165424_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.37588e-102
NZ_CP040098.1\|WP_137425495.1\|3164063_3164342_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.19682e-24
NZ_CP040098.1\|WP_137425492.1\|3157009_3157645_-\|RAMP-superfamily-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.84717e-05
NZ_CP040098.1\|WP_137425479.1\|3124467_3125739_-\|2-hydroxyacyl-CoA-dehydratase	gnl\|CDD\|377594	pfam06050, HGD-D, 2-hydroxyglutaryl-CoA dehydratase, D-component. Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalyzed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate.	1.41485e-143
NZ_CP040098.1\|WP_170180387.1\|3153859_3155347_-\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.59588e-17
NZ_CP040098.1\|WP_137425488.1\|3150873_3153267_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	7.03752e-96
NZ_CP040098.1\|WP_137425478.1\|3123694_3124453_-\|3-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|224835	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].	5.53098e-68
NZ_CP040098.1\|WP_137425480.1\|3137620_3137935_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	1.64725e-20
NZ_CP040098.1\|WP_137425487.1\|3149775_3150837_-\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.14059e-33
NZ_CP040098.1\|WP_137425485.1\|3139076_3139433_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	1.75326e-12
NZ_CP040098.1\|WP_137425489.1\|3153266_3153863_-\|hypothetical-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	4.21843e-18
NZ_CP040098.1\|WP_137425483.1\|3138452_3138674_-\|LapA-family-protein	gnl\|CDD\|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	6.9408e-05

>NZ_CP040098.1|WP_137425486.1|3139837_3140107_+|hypothetical-protein
MEKADEAIADSRAVEFWDAAEDNPETLHYFRFVNDLPLNKSHPNLRMNLLECSQVTRKELLRFSWVTDILIRRVNAVTLMRIGRSRRLL
>NZ_CP040098.1|WP_137425485.1|3139076_3139433_-|antibiotic-biosynthesis-monooxygenase
MIIIRITMETLPEKQKEVVQTILSLMASMERQAGCLSYALLCEIRDKNLLCVLEEWESREKLDTYLKSDVFGVLLGTKSLLRQAHSIQIHTVRKTEGMEAVLAVRATKDDNFRKGDRQ
>NZ_CP040098.1|WP_137425484.1|3138663_3139080_-|hypothetical-protein
MNMLLIYAKFPETFWSFPLVPKLQLGNGLTEAGASAHLCSQAGAWEQEAKEVHPIKKKSAFPPLGFEDLAWVDHCFLGAMAIQRKSVAQIIACCKAMELKIVGGGPLFTAEPDTFSLTESIALNMDLQDRNREDFHEA
>NZ_CP040098.1|WP_137425483.1|3138452_3138674_-|LapA-family-protein
MKPKKIIGVSLAGLVLLFIVQNVAVMNLRFLFWTLSMSGALLMLLVLSVGVILGWLLHGGFGRRKSNAEFSDG
>NZ_CP040098.1|WP_137425482.1|3138187_3138367_-|CsbD-family-protein
MKWSIRDHVEGKLHRVKGKIKEVAGKIADNPELEIEGKGENAAGKVQEKAGDIKKVVGK
>NZ_CP040098.1|WP_137425481.1|3137994_3138138_-|lmo0937-family-membrane-protein
MLWTIFVILLVLWALGLLTGYTLGGIIHALLVIALIVILIQVIQGRR
>NZ_CP040098.1|WP_137425480.1|3137620_3137935_-|BON-domain-containing-protein
MNTKRTIIGSLVACIVFFTFLSCSPTSEKSSTGEYIDDSVITTKVKALLAEDDFLESFQISVETYKGVVQLSGFVDTQDAAAKAGQIARSVEGVKSVKNDLIVK
>NZ_CP040098.1|WP_137425479.1|3124467_3125739_-|2-hydroxyacyl-CoA-dehydratase
MTASYEAMWERLGLDLDAHTSLLEVLGKFYGDIYMSQQGRLRGMEYLDFVVSEIHGLRIRELEEARAQGRKVIGTFCVFVPEEIVWAAGGIQVGLCAGAEAGTEAAEKILPRNTCALIKSFVGFKLARLCPFTESCDMIVGETTCDGKKKAYEIFSDHAPVYVMEIPQMKGAADRALWKAEVLRFKEAVEDLTGRSITAENLSEAVRLINRRRRVLQRLNRLRAAQPVPISGRDVLLINQVSFYDDPDRFTQKIGELCDELEAKVRRGEGVADGAARVLLSGCPMAIPNWKLPYIIESSGAVMVGEESCIGTRNTRDLVDESGRTLEEMLDAIVERYMKIDCACFTPNTERLEHIVDLARELEVKGVIHYGLSFCQPYAMESFKVEKALRNAGIPMLAVETDYSMEDVEQLKTRVEAFVEMIR
>NZ_CP040098.1|WP_137425478.1|3123694_3124453_-|3-hydroxyacyl-ACP-dehydratase
MAVIGIDIGSRSIERVVWDPATGRWSWDKVPTTFDPVAQCRKLLADADGCPVVATGYGRRLVAEHFPGLSVRTITEIQAYARGVHHLVPEARTVLDIGGQDTKVIALSREGAVVRFEMNDRCAAGTGKFLEFMASSLQVPLEVFGDFALEADKQVTLNSMCTVFAESEATSLMARGERPQNIAMALHQAVVRRTLAMLRRVGGERPVVFAGGVAHNRCIVRLIGDSLGGGLILAEDPDVVGALGAALAGALP
>NZ_CP040098.1|WP_137425477.1|3122174_3122975_-|chordopoxvirus-fusion-protein
MPQTTGQGITSEIYKAIVAIVDDRVREIRVTREEFDDLKQVVRELAQAQARTEQRLDRLAEKIEELAEAQKRTEARVEELAEAQKRTEARVEELAEAQKRTEARVEELAEAQKKTEVMLARLTDEHRRTREMLGGLAHTVGYRLEDEAIWALPHLLARDFGMEIDGQLVCTFLETAPNRYVEVNIWGYGVLNGRRVAILGEAKSQLKKRDVDGFLKTMARVREISGMEVFPVLVTYQVSPKVKQAAAEKGMKVYLSYELRVSHGSS
>NZ_CP040098.1|WP_137425487.1|3149775_3150837_-|putative-CRISPR-associated-protein
MPRQILCTVGTSLLTNRDGRPWGGWNPRNRDPLPPDDEVDRWLQTADAAAASAETNTLARLELAETDILVLLHSDTPEGRFCAERLQSFYRAKVRVVALEQIGRLGYGAAQFTSGLKALVDAAIRRVHDAQERGIQTVVCATGGFKAEIAFLNLMGALLGIEVVYIHELHRELVRLPRMPLTWNADFVVQHSDFFQWIDDEPRKSAEVESWLKGRPELRPLVEDAEDGCTYLSAAGDLLYKVARERLSMGPRVLWPKADTRLPREKNHVSTVEHHRPAGWEQFVERLCDIPYVTSVRYDPQGSGSRVKVIDAVNGIIGVCYGGPQNALPLRVETTARGEEQTQLVADCLRRLK
>NZ_CP040098.1|WP_137425488.1|3150873_3153267_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MALERGKLILSKKGKPQIEIGGKLFNPARGELSQSIWARLKELHGTEVEFEREGGQPKKIREVGSQFVPPATATAPTGHSKTFHQKGAGHQPTAGQPRTVKREFHNPYNFIPAPPRETNDPDLGDHEPATHDRFHSDRFTGRIRVTMEAITPLLVPDPNSCREDDNGHKTFALLLDSDGKPLLPSSSVRGMLRSAYEAVTNSRLGRFPRTNHGKRLAYRMEAREGLRLIPARIENGKIHLLTGTSEIGNNGSPSGPQYAAWLTRYSGNNKNTSRALTYSDGSLPQHGDKVECWVELVQHRSRKFKYWKVTKIDKIGANLGNPPAPSKPIRGWVCITNANIERKHDERVFFCEGTPPAGPFPVTDELREQWKQLIENYQEIHEEDLERRKKDSRRPDEYLGPKPGQTAWSRHVYTKKDRELQDGTLCYARLKNGNTGVEALFPVMITRELYPVAPWHLLDPSLRPASTMSELSPADRVFGWVMGDSDNQPRRPKNSRAFKGLLRIGPVTCDTSPDESVETFPGDGLPLAILAAPKPQQGRFYVAASPQGEAQRDGLSKIDAGYKPGKGLRGRKVFPHHSGLPANHWHSPLEDRTQRSNGPWQEYRRPIDNGREQRDDQNRSILGWIKQGARFSFDIHVTNLSKVELGALWFLLNLPERHYHRFGGGKPIGFGSVRLAGAECKLCTGLLLREWYRGWSDQGRSEEIPEDAMAAFKEALVRAYGRPRGKGSFEEISFIEAFLRACRGFDDALPIHYPRVTKQPHPQGESFKWFVANEKPGGRFALRDLVDDTGLPMLQDV
>NZ_CP040098.1|WP_137425489.1|3153266_3153863_-|hypothetical-protein
MNRLEGCTIEPLNPETCRAVLEWVAGGPTPAGFDRCLIWLLAHCRDGVTWGRRENSSWPLSATPFPDLCPAVSADNLLEMRLFGKREEIMIWRSEEEFLGRRLVDEPQQSEDSPLRPHDETRILSGDRLLEGPKDGFSRVKTAAGTQQAVPLECTESDFKDGWWPLRLSVRHYFEQEPHTGAVRVAASRLVHLFKEVR
>NZ_CP040098.1|WP_170180387.1|3153859_3155347_-|hypothetical-protein
MNAETSRLRDGGGVRSMAARWIVTGVMSLETAAHFGGEGDTAVDIAVLRDPKEGVPLLPGTSLAGALRGHLADVLGGYRSVEDEKVAVLFGAARSDDEGSQSPLVVFDSLGTLPEGTVSEIRDGVAIDSATGTAEVHKKFDFEVLPAGTCFPVRVELVVGNAKKVVEDPKKEARLVGLLVAALDGLTQGDIALGMRRSRGLGAVKAGRWKALRYDLTKPQDWLAWLTSDHQQPIGDHVQGHSSAAEAIRTACPSLKIEAFDDKRRRLLVDLEMEPAGDLLVRSPATEPEAPDVIHLCTAGKPVLPGTGLAGALRAQALRIARLVREGHGDGDCWVDRLFGPRLKGGNKDSEGGQAAASKLRLTESFLEDSDVRRQTRIAIDRFTGGVVSGALFEEQVQVGGKLKIRVELRDPSDPEIGLLLLLLKDLLSGNIPVGGTVAVGRGVLRGTARVRLPGETVYEIAQDLSVNKEARKVFDKKIAAFHEAETLKAEEARP
>NZ_CP040098.1|WP_137425491.1|3155336_3157013_-|hypothetical-protein
MTGCRYFPYTLTLKSPAVITALGGDPNSSSTLAYIPGAAVRGAVAKALGDPGADTAGQKEFQELIFGGKVRYLNAYPSLDGLRSLPVPLSLRRKKNDAPADRRVYAVDLAAFDGRPAPGKEPNECWPEEQLAPLKQGFLTIGAAQPVLLQPKMNARIHHQRDREKGRAWKDRVGTTHGAIFAFESLDAGQSFQGLIQVRGGTDKELERTVRLLKALLGDTILVGRSRRAGYGGMAALQWGEGRTREVDGVGRDGLRPVGADIPRGIRFRLLLTSACIARNANTGQIDPAALPDLIKGRFCGRAKLLRTRWSFTPIGGFNRKWRLELPQTLAVSAGSVFLLEANQDIPVGQLYAVENEGLGERREEGYGRVLFLDAPLPSISLQEHEEAASFPAVDGQPPPLVSDIEKRIVWGRIARKIEEKVAAITLSARNLPANSLIGRLRTPLRGNPEEAIGTLKRWLRDGSETECLKKPAMDQLESCRMDGHQNLADWMLKATEPDRVLSWLDADVLAQRGHIVSEQSAKQSLEKRSVEISVKLIDAVLAALAVRNKTEEAGDEC
>NZ_CP040098.1|WP_137425492.1|3157009_3157645_-|RAMP-superfamily-protein
MCQNPFIQIELLSDTTFSRGEGTAGLVDVEVEHDAWGLPFLGGKAVRGLLRDSWLSMQEGFPELAPSAVRLFGPEGDCNESSMLHIGDAVVDEETRRWIQAAQTRTNDPVSPAAVLEALTDIRRQTSEMRQTGAPAETTLRAVRVIVRGLILCAPLRWLADPTPQDVRCLCLALLATRHAGLTRNRGRGHVRMTLDGDPEKTRKAAKGGSV
>NZ_CP040098.1|WP_137425493.1|3157674_3159219_-|hypothetical-protein
MPVLTAIDVLGVQRFVFQSNRLRDVVTGSYVVHWSTSEKGALKDLTPTDKILLAGGGNAIVETGSMDEARSFAARYTRILHDDAPGLEVAVVHKEYKEGNLASTLHGLQIELAHAKTERFPSVPLLGLSVTASCRETGLVACGFDKDEPTVPLSKEILSRRKKKDEAKTHWEADLKDRDGFAFPIELDHLGRTMGDTSLIGVVHIDGNSVGEKITSWLKQKSEDSTADDDLVRRQYREWSQAIDRLGQEALQAVVNRLCRQVEKPAQDHPGSVMGRPKRLRFELKQKDGRWMLPLRPILLGGDDLTFVCDGRIAMDLAETALGVFETSRIPHLGKITACAGVAVVRVHAPFARAYELADKLCASAKRMLKEKDDCGCALDWHIGACRPGETVEGIRERQYRANGRRLTCRPYRLGSEKDDTETWRWLSGTLLDSKTVGLREGAWSERRNKVKAFPELVREGPDSVKAALEAWKVVDKRLQLPQPIARNGFFDDTRTPLIDALELIDLHLVLDAP
>NZ_CP040098.1|WP_170180388.1|3159230_3160400_-|DUF1887-family-protein
MAYGEMACKRLLLLVGSNPLPNYITALILKPQSISLFYSPETEEVMKYLCKALEVALSGAHLDATCIEDATSAAKVRNAFPKNLHDFHFHYTGGTKIMAAHARMAFRDAGGKDEQASYLDERKGVLRFDNGYGLDLAKQQLGLTLDDVLRLRGIKPLSGSQPQADDPWQDDAARIARAVLEDSSLAQSLYHLHRDRETNKRLPFIKAKANAVKVDELVPGGLSIQRIPEEHWKRQTYYDWLRFLGGGWLETWCGTLVRQIVDGDEIAVGLDCKLANGRQCEVDVALVRGHRLYMISCTTDSKIGLCKSKLFEAAMRARQLGGDLARSALVCLLHGSDLKGAFVDQLRNDVADVWDAPNTPQVFGLDDLKEWAGIGSPPALNSLRTWLES
>NZ_CP040098.1|WP_137425495.1|3164063_3164342_-|CRISPR-associated-endonuclease-Cas2
MFYVVAFDISDDRTRYRAVKVLKAFGYRVQKSVFECPDLTEKRFLRLKDRLEALIDFTTDSVRYYRQCRACLDDCEVSGLGELPEVKDYKVV
>NZ_CP040098.1|WP_137425496.1|3164371_3165424_-|CRISPR-associated-endonuclease-Cas1
MERTYVLEPGAYLRKAGDHLAVTKAGALIAEIPLEGLRQLTLVGAASLSGAVLDVLIQRRIETVLLTPRGRFRARLMVDEHKHVERRRAQYLRLSDPDFVLRTAKAVVAGKLRNAARFLSLRAKAYGDGELGRTAARLKGLSESVASQSDLDLVRGMEGIGGNLYFQVFARLIRVPGFRFEGRNRRPPKDPINALLSFVYTLLTLEVLTAVKVVGLDPYLGALHAVEYGRPSLPCDLVEEWRSFLGDRLVLGLVNRRVIGPDDFVYRKVACIDGVDEEDLKQRRPVEMKPKIARAFLEAYERWMTTRVTLPDTGIGTDYRGLIRHQVWNFCRCLTGERDAYEPFMWSKVT

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Crispr_ID: NZ_CP040098_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_29

3160486-3163561

TypeIII

Consensus_repeat	Method
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CRISPRCasFinder
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CRT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	PILER-CR

41 spacers

csx1,cas10,csm3gr7,csx10gr5,csx19,csm6,cas2,cas1,PrimPol,cas6,csm2gr11,csm4gr5,csm5gr7

The CRISPR arrays of NZ_CP040098_29

>merge|NZ_CP040098|29|3160486-3163561|CRISPRCasFinder,CRT,PILER-CR
ATCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGATGTAAAGGACATGTCAGATAAGGTTGCAACGATTGTCTCAATCCACTCAAATCGGGGCCGTCCTTCGGACAGGGAGAAATAACATGCAAGAGAAACTTAGCGAGGCTATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAATCCCGAAGAAAATTCGGGACGAGGTGCAGAGGGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGGAACCACTCCAACGGACGAAATGCTGATAGCTGAAAAGTCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGACGAGTAAAAATACTGAAGGCCGACCGCGGGGACACTTTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACCGTAGTCTCGTATGTGTGGCCACGCATGCCGGCGAAGAAAATTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACTGGAAATTGGACGCGAAGACAAGCACCTCGGAAAAAAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACATATCCATTCTATTGTCACCGGTGATCGCGGATCGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACAAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACTCATCGACATAGCCCTACGAACTGGGGTCTCTCTAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACAGGAGGAAGAAGGGGAGGAAGAGGAGGAAGATACTGGTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGGAACCACTCCAACGGACGAAATGCTGATAGCTGAAAAGTCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGACGAGTAAAAATACTGAAGGCCGACCGCGGGGACACTTTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACCGTAGTCTCGTATGTGTGGCCACGCATGCCGGCGAAGAAAATTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACTGGAAATTGGACGCGAAGACAAGCACCTCGGAAAAAAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACATATCCATTCTATTGTCACCGGTGATCGCGGATCGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACAAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACAAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACAGAAACAGCAATTTCAAAACTTCAGCCGGCCGAGATAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACCCAGCAAAGGCGCCGCCGAAAAAGGCGGCGCCTAAGAAGGCGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACCCTCCAGCGATTACCTGCGCTCCATGCACCGAATCTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACCGCCGACTATCGATACATCCACGCTGGAAACCAAAAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACCGAGGGGTTCTTCTTTACAGAGCATAACATCAAGATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACTCATTGATTTCATTATGCAGACTGCGATTTGCCCAAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACCGAGTCCGGCGACAGGCCCTCAAGCGTGGCCGCATTCGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACGCAAAAGAGAGCGCAATTTCAAAAACTTCAGCCGGCCGAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACTCAAACCCCTTCTACTATACCTTGCCGGATTCCACCACGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACCATGTTGATGGTTCCGTTTGAGGCGCAGGTAGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACGGTGCTGAAATGGACATTGATCTTGAGGGCCTTTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTTATTGACAAGTCTCCGGTAGGGGCCCTAGAAGCCCTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGCGACGTTGGAACAAACAAATGAGATTACAGCGTTGATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCATTCGGATGTGAACATCCCGATGGGGCTGGTAGGACAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACAGCAGCCGGATGGGTCAGTCAAGAAAGAATCAGTCTTGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTGAACTTATAGGCGACGCGATCGAGGAGTATCTGGCAAAACGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACTTAGCATCGTATCGGTCGATAAGGAATACCAAGACGGTAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCCGCGGTAGTTCGCCTTTTTTGTTTGAAGGATAAATCAAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACCGCCACCTCTTAAACGGGAATATGCTGGAGCTGATATGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGTACAGGGTGAGCCGACTTTGTGTTTCAACCTGGCCTTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGGTACAGGGTGAGCCGACTTTGTGTTTCAACCTGGCCTTGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGCGATTTGGTAGGGCTCTACGAGCGTTTCCGCGATCTAGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACGCACCCTGGCCTATGTGCTGGGGTTCAAAGAGAGCAACTGGGGTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC

>NZ_CP040098|29|29|3160486-3163561|CRISPRCasFinder
ATCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGATGTAAAGGACATGTCAGATAAGGTTGCAACGATT
GTCTCAATCCACTCAAATCGGGGCCGTCCTTCGGAC	AGGGAGAAATAACATGCAAGAGAAACTTAGCGAGGCTAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AATCCCGAAGAAAATTCGGGACGAGGTGCAGAGGGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAACCACTCCAACGGACGAAATGCTGATAGCTGAAAA
GTCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGAC	GAGTAAAAATACTGAAGGCCGACCGCGGGGACACTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	CGTAGTCTCGTATGTGTGGCCACGCATGCCGGCGAAGAAAATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	TGGAAATTGGACGCGAAGACAAGCACCTCGGAAAAAAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	ATATCCATTCTATTGTCACCGGTGATCGCGGATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	AAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	TCATCGACATAGCCCTACGAACTGGGGTCTCTCTAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	AGGAGGAAGAAGGGGAGGAAGAGGAGGAAGATACTGGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGGAACCACTCCAACGGACGAAATGCTGATAGCTGAAAA
GTCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGAC	GAGTAAAAATACTGAAGGCCGACCGCGGGGACACTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	CGTAGTCTCGTATGTGTGGCCACGCATGCCGGCGAAGAAAATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	TGGAAATTGGACGCGAAGACAAGCACCTCGGAAAAAAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	ATATCCATTCTATTGTCACCGGTGATCGCGGATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	AAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	AAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	AGAAACAGCAATTTCAAAACTTCAGCCGGCCGAGATA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	CCAGCAAAGGCGCCGCCGAAAAAGGCGGCGCCTAAGAAGGCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	CCTCCAGCGATTACCTGCGCTCCATGCACCGAATCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	CGCCGACTATCGATACATCCACGCTGGAAACCAAAAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	CGAGGGGTTCTTCTTTACAGAGCATAACATCAAGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	TCATTGATTTCATTATGCAGACTGCGATTTGCCCAAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	CGAGTCCGGCGACAGGCCCTCAAGCGTGGCCGCATTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	GCAAAAGAGAGCGCAATTTCAAAAACTTCAGCCGGCCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	TCAAACCCCTTCTACTATACCTTGCCGGATTCCACCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	CATGTTGATGGTTCCGTTTGAGGCGCAGGTAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGAC	GGTGCTGAAATGGACATTGATCTTGAGGGCCTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTATTGACAAGTCTCCGGTAGGGGCCCTAGAAGCCCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCGACGTTGGAACAAACAAATGAGATTACAGCGTTGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CATTCGGATGTGAACATCCCGATGGGGCTGGTAGGACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	AGCAGCCGGATGGGTCAGTCAAGAAAGAATCAGTCTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TGAACTTATAGGCGACGCGATCGAGGAGTATCTGGCAAAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	TTAGCATCGTATCGGTCGATAAGGAATACCAAGACGGTAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CCGCGGTAGTTCGCCTTTTTTGTTTGAAGGATAAATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	CGCCACCTCTTAAACGGGAATATGCTGGAGCTGATAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGTACAGGGTGAGCCGACTTTGTGTTTCAACCTGGCCTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GGTACAGGGTGAGCCGACTTTGTGTTTCAACCTGGCCTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCGATTTGGTAGGGCTCTACGAGCGTTTCCGCGATCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC	GCACCCTGGCCTATGTGCTGGGGTTCAAAGAGAGCAACTGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC

>NZ_CP040098|29|3|3160486-3163556|CRT
ATCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACTGATGTAAAGGACATGTCAGATAAGGTTGCAACGATT
GTCTCAATCCACTCAAATCGGGGCCGTCCTT	CGGACAGGGAGAAATAACATGCAAGAGAAACTTAGCGAGGCTAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACAATCCCGAAGAAAATTCGGGACGAGGTGCAGAGGGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACTGGAACCACTCCAACGGACGAAATGCTGATAGCTGAAAA
GTCTCAATCCCCTCAAATCGGGGCCGTTCTT	CGGACGAGTAAAAATACTGAAGGCCGACCGCGGGGACACTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACCGTAGTCTCGTATGTGTGGCCACGCATGCCGGCGAAGAAAATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACTGGAAATTGGACGCGAAGACAAGCACCTCGGAAAAAAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACATATCCATTCTATTGTCACCGGTGATCGCGGATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACAAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACTCATCGACATAGCCCTACGAACTGGGGTCTCTCTAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACAGGAGGAAGAAGGGGAGGAAGAGGAGGAAGATACTGGT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACTGGAACCACTCCAACGGACGAAATGCTGATAGCTGAAAA
GTCTCAATCCCCTCAAATCGGGGCCGTTCTT	CGGACGAGTAAAAATACTGAAGGCCGACCGCGGGGACACTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACCGTAGTCTCGTATGTGTGGCCACGCATGCCGGCGAAGAAAATT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACTGGAAATTGGACGCGAAGACAAGCACCTCGGAAAAAAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACATATCCATTCTATTGTCACCGGTGATCGCGGATCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACAAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACAAGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACAGAAACAGCAATTTCAAAACTTCAGCCGGCCGAGATA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACCCAGCAAAGGCGCCGCCGAAAAAGGCGGCGCCTAAGAAGGCG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACCCTCCAGCGATTACCTGCGCTCCATGCACCGAATCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACCGCCGACTATCGATACATCCACGCTGGAAACCAAAAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACCGAGGGGTTCTTCTTTACAGAGCATAACATCAAGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACTCATTGATTTCATTATGCAGACTGCGATTTGCCCAAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACCGAGTCCGGCGACAGGCCCTCAAGCGTGGCCGCATTC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACGCAAAAGAGAGCGCAATTTCAAAAACTTCAGCCGGCCGA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACTCAAACCCCTTCTACTATACCTTGCCGGATTCCACCAC
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACCATGTTGATGGTTCCGTTTGAGGCGCAGGTAG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	AGGACGGTGCTGAAATGGACATTGATCTTGAGGGCCTTTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACTTATTGACAAGTCTCCGGTAGGGGCCCTAGAAGCCCT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACGCGACGTTGGAACAAACAAATGAGATTACAGCGTTGAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACCATTCGGATGTGAACATCCCGATGGGGCTGGTAGGACA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACAGCAGCCGGATGGGTCAGTCAAGAAAGAATCAGTCTT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACTGAACTTATAGGCGACGCGATCGAGGAGTATCTGGCAAAACG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACTTAGCATCGTATCGGTCGATAAGGAATACCAAGACGGTAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACCCGCGGTAGTTCGCCTTTTTTGTTTGAAGGATAAATCAA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACCGCCACCTCTTAAACGGGAATATGCTGGAGCTGATAT
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACGGTACAGGGTGAGCCGACTTTGTGTTTCAACCTGGCCTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACGGTACAGGGTGAGCCGACTTTGTGTTTCAACCTGGCCTTG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACGCGATTTGGTAGGGCTCTACGAGCGTTTCCGCGATCTA
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT	CGGACGCACCCTGGCCTATGTGCTGGGGTTCAAAGAGAGCAACTGGG
GTCTCAATCCCCTCAAATCGGGGCCGTCCTT

>NZ_CP040098|29|5|3160487-3163257|PILER-CR
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACT	GATGTAAAGGACATGTCAGATAAGGTTGCAACGATTG
TCTCAATCCACTCAAATCGGGGCCGTCCTTCGGACA	GGGAGAAATAACATGCAAGAGAAACTTAGCGAGGCTATG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACA	ATCCCGAAGAAAATTCGGGACGAGGTGCAGAGGGAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACT	GGAACCACTCCAACGGACGAAATGCTGATAGCTGAAAAG
TCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGACG	AGTAAAAATACTGAAGGCCGACCGCGGGGACACTTTAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACC	GTAGTCTCGTATGTGTGGCCACGCATGCCGGCGAAGAAAATTG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACT	GGAAATTGGACGCGAAGACAAGCACCTCGGAAAAAAGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACA	TATCCATTCTATTGTCACCGGTGATCGCGGATCGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACA	AGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACT	CATCGACATAGCCCTACGAACTGGGGTCTCTCTAGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACA	GGAGGAAGAAGGGGAGGAAGAGGAGGAAGATACTGGTG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACT	GGAACCACTCCAACGGACGAAATGCTGATAGCTGAAAAG
TCTCAATCCCCTCAAATCGGGGCCGTTCTTCGGACG	AGTAAAAATACTGAAGGCCGACCGCGGGGACACTTTAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACC	GTAGTCTCGTATGTGTGGCCACGCATGCCGGCGAAGAAAATTG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACT	GGAAATTGGACGCGAAGACAAGCACCTCGGAAAAAAGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACA	TATCCATTCTATTGTCACCGGTGATCGCGGATCGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACA	AGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACA	AGAATTCCCGGAGCTGAAAACGGTCGAAGACTTTAACGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACA	GAAACAGCAATTTCAAAACTTCAGCCGGCCGAGATAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACC	CAGCAAAGGCGCCGCCGAAAAAGGCGGCGCCTAAGAAGGCGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACC	CTCCAGCGATTACCTGCGCTCCATGCACCGAATCTAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACC	GCCGACTATCGATACATCCACGCTGGAAACCAAAAAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACC	GAGGGGTTCTTCTTTACAGAGCATAACATCAAGATG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACT	CATTGATTTCATTATGCAGACTGCGATTTGCCCAAAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACC	GAGTCCGGCGACAGGCCCTCAAGCGTGGCCGCATTCG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACG	CAAAAGAGAGCGCAATTTCAAAAACTTCAGCCGGCCGAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACT	CAAACCCCTTCTACTATACCTTGCCGGATTCCACCACG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACC	ATGTTGATGGTTCCGTTTGAGGCGCAGGTAGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTAGGACG	GTGCTGAAATGGACATTGATCTTGAGGGCCTTTAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACT	TATTGACAAGTCTCCGGTAGGGGCCCTAGAAGCCCTG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACG	CGACGTTGGAACAAACAAATGAGATTACAGCGTTGATG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACC	ATTCGGATGTGAACATCCCGATGGGGCTGGTAGGACAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACA	GCAGCCGGATGGGTCAGTCAAGAAAGAATCAGTCTTG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACT	GAACTTATAGGCGACGCGATCGAGGAGTATCTGGCAAAACGG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACT	TAGCATCGTATCGGTCGATAAGGAATACCAAGACGGTAAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACC	CGCGGTAGTTCGCCTTTTTTGTTTGAAGGATAAATCAAG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGACC	GCCACCTCTTAAACGGGAATATGCTGGAGCTGATATG
TCTCAATCCCCTCAAATCGGGGCCGTCCTTCGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425493.1\|3157674_3159219_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NZ_CP040098.1\|WP_137425491.1\|3155336_3157013_-\|hypothetical-protein	csx10gr5	cls000715_csx10gr5_CAS-III-D	gnl\|CDD\|131722
NZ_CP040098.1\|WP_137425499.1\|3167452_3168493_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NZ_CP040098.1\|WP_137425505.1\|3174683_3175094_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	unknown	unknown	gnl\|CDD\|187753
NZ_CP040098.1\|WP_137425502.1\|3171603_3172332_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_CP040098.1\|WP_137425495.1\|3164063_3164342_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP040098.1\|WP_170180388.1\|3159230_3160400_-\|DUF1887-family-protein	csx1	mkCas0112_csx1_CAS-III	gnl\|CDD\|312526
NZ_CP040098.1\|WP_137425492.1\|3157009_3157645_-\|RAMP-superfamily-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NZ_CP040098.1\|WP_137425501.1\|3171105_3171591_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_CP040098.1\|WP_170180387.1\|3153859_3155347_-\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|187857
NZ_CP040098.1\|WP_170180389.1\|3165445_3166645_-\|DNA-primase	PrimPol	COG4951_PrimPol_CAS-I:CAS-III	gnl\|CDD\|227287
NZ_CP040098.1\|WP_137425504.1\|3173271_3174438_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NZ_CP040098.1\|WP_137425486.1\|3139837_3140107_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040098.1\|WP_137425503.1\|3172333_3173275_+\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|273866
NZ_CP040098.1\|WP_137425496.1\|3164371_3165424_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP040098.1\|WP_137425500.1\|3168557_3171089_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP040098.1\|WP_137425487.1\|3149775_3150837_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NZ_CP040098.1\|WP_137425485.1\|3139076_3139433_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|367760
NZ_CP040098.1\|WP_137425489.1\|3153266_3153863_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NZ_CP040098.1\|WP_137425488.1\|3150873_3153267_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040098.1\|WP_137425493.1\|3157674_3159219_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	6.9e-90	296.7	0.0
NZ_CP040098.1\|WP_137425491.1\|3155336_3157013_-\|hypothetical-protein	csx10gr5	cls000715_csx10gr5_CAS-III-D	3.8e-37	123.1	0.0
NZ_CP040098.1\|WP_137425499.1\|3167452_3168493_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	9.1e-109	358.3	0.2
NZ_CP040098.1\|WP_137425495.1\|3164063_3164342_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.5e-24	80.8	0.4
NZ_CP040098.1\|WP_170180388.1\|3159230_3160400_-\|DUF1887-family-protein	csx1	mkCas0112_csx1_CAS-III	2.9e-76	251.7	0.0
NZ_CP040098.1\|WP_137425492.1\|3157009_3157645_-\|RAMP-superfamily-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	5.2e-56	184.1	0.0
NZ_CP040098.1\|WP_137425501.1\|3171105_3171591_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	2e-19	64.9	3.1
NZ_CP040098.1\|WP_170180387.1\|3153859_3155347_-\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	5.1e-32	106.4	0.0
NZ_CP040098.1\|WP_170180389.1\|3165445_3166645_-\|DNA-primase	PrimPol	COG4951_PrimPol_CAS-I:CAS-III	1.3e-19	65.1	0.0
NZ_CP040098.1\|WP_137425504.1\|3173271_3174438_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	2.5e-31	103.7	0.0
NZ_CP040098.1\|WP_137425502.1\|3171603_3172332_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	4.9e-70	230.3	0.0
NZ_CP040098.1\|WP_137425503.1\|3172333_3173275_+\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	1.5e-63	209.7	0.0
NZ_CP040098.1\|WP_137425496.1\|3164371_3165424_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	4.8e-93	306.3	0.0
NZ_CP040098.1\|WP_137425500.1\|3168557_3171089_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	1.6e-121	401.6	0.0
NZ_CP040098.1\|WP_137425487.1\|3149775_3150837_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	9.8e-36	117.5	0.0
NZ_CP040098.1\|WP_137425489.1\|3153266_3153863_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	1.7e-20	68.1	0.0
NZ_CP040098.1\|WP_137425488.1\|3150873_3153267_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	2.8e-108	358.3	0.0

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425491.1\|3155336_3157013_-\|hypothetical-protein	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	8.74898e-29
NZ_CP040098.1\|WP_137425499.1\|3167452_3168493_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	7.81001e-09
NZ_CP040098.1\|WP_137425505.1\|3174683_3175094_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	gnl\|CDD\|187753	cd09281, UPF0066, Escherichia coli YaeB and related proteins. Uncharacterized protein family UPF0066. This domain includes Escherichia coli YeaB, Archeoglobus fulgidus AF0241, and Agrobacterium tumefaciens VirR. Proteins with this domain are probable S-adenosylmethionine-dependent methyltransferases but they have not been functionally characterized and the substrate is unknown.	4.15426e-47
NZ_CP040098.1\|WP_137425495.1\|3164063_3164342_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.19682e-24
NZ_CP040098.1\|WP_170180388.1\|3159230_3160400_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	3.35222e-08
NZ_CP040098.1\|WP_137425501.1\|3171105_3171591_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.93759e-29
NZ_CP040098.1\|WP_170180387.1\|3153859_3155347_-\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.59588e-17
NZ_CP040098.1\|WP_170180389.1\|3165445_3166645_-\|DNA-primase	gnl\|CDD\|227287	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown].	4.50505e-16
NZ_CP040098.1\|WP_137425504.1\|3173271_3174438_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.88037e-10
NZ_CP040098.1\|WP_137425502.1\|3171603_3172332_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	6.28034e-78
NZ_CP040098.1\|WP_137425503.1\|3172333_3173275_+\|hypothetical-protein	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	1.49453e-12
NZ_CP040098.1\|WP_137425496.1\|3164371_3165424_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.37588e-102
NZ_CP040098.1\|WP_137425500.1\|3168557_3171089_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.68821e-126
NZ_CP040098.1\|WP_137425487.1\|3149775_3150837_-\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.14059e-33
NZ_CP040098.1\|WP_137425489.1\|3153266_3153863_-\|hypothetical-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	4.21843e-18
NZ_CP040098.1\|WP_137425485.1\|3139076_3139433_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	1.75326e-12
NZ_CP040098.1\|WP_137425492.1\|3157009_3157645_-\|RAMP-superfamily-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.84717e-05
NZ_CP040098.1\|WP_137425488.1\|3150873_3153267_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	7.03752e-96

>NZ_CP040098.1|WP_170180388.1|3159230_3160400_-|DUF1887-family-protein
MAYGEMACKRLLLLVGSNPLPNYITALILKPQSISLFYSPETEEVMKYLCKALEVALSGAHLDATCIEDATSAAKVRNAFPKNLHDFHFHYTGGTKIMAAHARMAFRDAGGKDEQASYLDERKGVLRFDNGYGLDLAKQQLGLTLDDVLRLRGIKPLSGSQPQADDPWQDDAARIARAVLEDSSLAQSLYHLHRDRETNKRLPFIKAKANAVKVDELVPGGLSIQRIPEEHWKRQTYYDWLRFLGGGWLETWCGTLVRQIVDGDEIAVGLDCKLANGRQCEVDVALVRGHRLYMISCTTDSKIGLCKSKLFEAAMRARQLGGDLARSALVCLLHGSDLKGAFVDQLRNDVADVWDAPNTPQVFGLDDLKEWAGIGSPPALNSLRTWLES
>NZ_CP040098.1|WP_137425493.1|3157674_3159219_-|hypothetical-protein
MPVLTAIDVLGVQRFVFQSNRLRDVVTGSYVVHWSTSEKGALKDLTPTDKILLAGGGNAIVETGSMDEARSFAARYTRILHDDAPGLEVAVVHKEYKEGNLASTLHGLQIELAHAKTERFPSVPLLGLSVTASCRETGLVACGFDKDEPTVPLSKEILSRRKKKDEAKTHWEADLKDRDGFAFPIELDHLGRTMGDTSLIGVVHIDGNSVGEKITSWLKQKSEDSTADDDLVRRQYREWSQAIDRLGQEALQAVVNRLCRQVEKPAQDHPGSVMGRPKRLRFELKQKDGRWMLPLRPILLGGDDLTFVCDGRIAMDLAETALGVFETSRIPHLGKITACAGVAVVRVHAPFARAYELADKLCASAKRMLKEKDDCGCALDWHIGACRPGETVEGIRERQYRANGRRLTCRPYRLGSEKDDTETWRWLSGTLLDSKTVGLREGAWSERRNKVKAFPELVREGPDSVKAALEAWKVVDKRLQLPQPIARNGFFDDTRTPLIDALELIDLHLVLDAP
>NZ_CP040098.1|WP_137425492.1|3157009_3157645_-|RAMP-superfamily-protein
MCQNPFIQIELLSDTTFSRGEGTAGLVDVEVEHDAWGLPFLGGKAVRGLLRDSWLSMQEGFPELAPSAVRLFGPEGDCNESSMLHIGDAVVDEETRRWIQAAQTRTNDPVSPAAVLEALTDIRRQTSEMRQTGAPAETTLRAVRVIVRGLILCAPLRWLADPTPQDVRCLCLALLATRHAGLTRNRGRGHVRMTLDGDPEKTRKAAKGGSV
>NZ_CP040098.1|WP_137425491.1|3155336_3157013_-|hypothetical-protein
MTGCRYFPYTLTLKSPAVITALGGDPNSSSTLAYIPGAAVRGAVAKALGDPGADTAGQKEFQELIFGGKVRYLNAYPSLDGLRSLPVPLSLRRKKNDAPADRRVYAVDLAAFDGRPAPGKEPNECWPEEQLAPLKQGFLTIGAAQPVLLQPKMNARIHHQRDREKGRAWKDRVGTTHGAIFAFESLDAGQSFQGLIQVRGGTDKELERTVRLLKALLGDTILVGRSRRAGYGGMAALQWGEGRTREVDGVGRDGLRPVGADIPRGIRFRLLLTSACIARNANTGQIDPAALPDLIKGRFCGRAKLLRTRWSFTPIGGFNRKWRLELPQTLAVSAGSVFLLEANQDIPVGQLYAVENEGLGERREEGYGRVLFLDAPLPSISLQEHEEAASFPAVDGQPPPLVSDIEKRIVWGRIARKIEEKVAAITLSARNLPANSLIGRLRTPLRGNPEEAIGTLKRWLRDGSETECLKKPAMDQLESCRMDGHQNLADWMLKATEPDRVLSWLDADVLAQRGHIVSEQSAKQSLEKRSVEISVKLIDAVLAALAVRNKTEEAGDEC
>NZ_CP040098.1|WP_170180387.1|3153859_3155347_-|hypothetical-protein
MNAETSRLRDGGGVRSMAARWIVTGVMSLETAAHFGGEGDTAVDIAVLRDPKEGVPLLPGTSLAGALRGHLADVLGGYRSVEDEKVAVLFGAARSDDEGSQSPLVVFDSLGTLPEGTVSEIRDGVAIDSATGTAEVHKKFDFEVLPAGTCFPVRVELVVGNAKKVVEDPKKEARLVGLLVAALDGLTQGDIALGMRRSRGLGAVKAGRWKALRYDLTKPQDWLAWLTSDHQQPIGDHVQGHSSAAEAIRTACPSLKIEAFDDKRRRLLVDLEMEPAGDLLVRSPATEPEAPDVIHLCTAGKPVLPGTGLAGALRAQALRIARLVREGHGDGDCWVDRLFGPRLKGGNKDSEGGQAAASKLRLTESFLEDSDVRRQTRIAIDRFTGGVVSGALFEEQVQVGGKLKIRVELRDPSDPEIGLLLLLLKDLLSGNIPVGGTVAVGRGVLRGTARVRLPGETVYEIAQDLSVNKEARKVFDKKIAAFHEAETLKAEEARP
>NZ_CP040098.1|WP_137425489.1|3153266_3153863_-|hypothetical-protein
MNRLEGCTIEPLNPETCRAVLEWVAGGPTPAGFDRCLIWLLAHCRDGVTWGRRENSSWPLSATPFPDLCPAVSADNLLEMRLFGKREEIMIWRSEEEFLGRRLVDEPQQSEDSPLRPHDETRILSGDRLLEGPKDGFSRVKTAAGTQQAVPLECTESDFKDGWWPLRLSVRHYFEQEPHTGAVRVAASRLVHLFKEVR
>NZ_CP040098.1|WP_137425488.1|3150873_3153267_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MALERGKLILSKKGKPQIEIGGKLFNPARGELSQSIWARLKELHGTEVEFEREGGQPKKIREVGSQFVPPATATAPTGHSKTFHQKGAGHQPTAGQPRTVKREFHNPYNFIPAPPRETNDPDLGDHEPATHDRFHSDRFTGRIRVTMEAITPLLVPDPNSCREDDNGHKTFALLLDSDGKPLLPSSSVRGMLRSAYEAVTNSRLGRFPRTNHGKRLAYRMEAREGLRLIPARIENGKIHLLTGTSEIGNNGSPSGPQYAAWLTRYSGNNKNTSRALTYSDGSLPQHGDKVECWVELVQHRSRKFKYWKVTKIDKIGANLGNPPAPSKPIRGWVCITNANIERKHDERVFFCEGTPPAGPFPVTDELREQWKQLIENYQEIHEEDLERRKKDSRRPDEYLGPKPGQTAWSRHVYTKKDRELQDGTLCYARLKNGNTGVEALFPVMITRELYPVAPWHLLDPSLRPASTMSELSPADRVFGWVMGDSDNQPRRPKNSRAFKGLLRIGPVTCDTSPDESVETFPGDGLPLAILAAPKPQQGRFYVAASPQGEAQRDGLSKIDAGYKPGKGLRGRKVFPHHSGLPANHWHSPLEDRTQRSNGPWQEYRRPIDNGREQRDDQNRSILGWIKQGARFSFDIHVTNLSKVELGALWFLLNLPERHYHRFGGGKPIGFGSVRLAGAECKLCTGLLLREWYRGWSDQGRSEEIPEDAMAAFKEALVRAYGRPRGKGSFEEISFIEAFLRACRGFDDALPIHYPRVTKQPHPQGESFKWFVANEKPGGRFALRDLVDDTGLPMLQDV
>NZ_CP040098.1|WP_137425487.1|3149775_3150837_-|putative-CRISPR-associated-protein
MPRQILCTVGTSLLTNRDGRPWGGWNPRNRDPLPPDDEVDRWLQTADAAAASAETNTLARLELAETDILVLLHSDTPEGRFCAERLQSFYRAKVRVVALEQIGRLGYGAAQFTSGLKALVDAAIRRVHDAQERGIQTVVCATGGFKAEIAFLNLMGALLGIEVVYIHELHRELVRLPRMPLTWNADFVVQHSDFFQWIDDEPRKSAEVESWLKGRPELRPLVEDAEDGCTYLSAAGDLLYKVARERLSMGPRVLWPKADTRLPREKNHVSTVEHHRPAGWEQFVERLCDIPYVTSVRYDPQGSGSRVKVIDAVNGIIGVCYGGPQNALPLRVETTARGEEQTQLVADCLRRLK
>NZ_CP040098.1|WP_137425486.1|3139837_3140107_+|hypothetical-protein
MEKADEAIADSRAVEFWDAAEDNPETLHYFRFVNDLPLNKSHPNLRMNLLECSQVTRKELLRFSWVTDILIRRVNAVTLMRIGRSRRLL
>NZ_CP040098.1|WP_137425485.1|3139076_3139433_-|antibiotic-biosynthesis-monooxygenase
MIIIRITMETLPEKQKEVVQTILSLMASMERQAGCLSYALLCEIRDKNLLCVLEEWESREKLDTYLKSDVFGVLLGTKSLLRQAHSIQIHTVRKTEGMEAVLAVRATKDDNFRKGDRQ
>NZ_CP040098.1|WP_137425495.1|3164063_3164342_-|CRISPR-associated-endonuclease-Cas2
MFYVVAFDISDDRTRYRAVKVLKAFGYRVQKSVFECPDLTEKRFLRLKDRLEALIDFTTDSVRYYRQCRACLDDCEVSGLGELPEVKDYKVV
>NZ_CP040098.1|WP_137425496.1|3164371_3165424_-|CRISPR-associated-endonuclease-Cas1
MERTYVLEPGAYLRKAGDHLAVTKAGALIAEIPLEGLRQLTLVGAASLSGAVLDVLIQRRIETVLLTPRGRFRARLMVDEHKHVERRRAQYLRLSDPDFVLRTAKAVVAGKLRNAARFLSLRAKAYGDGELGRTAARLKGLSESVASQSDLDLVRGMEGIGGNLYFQVFARLIRVPGFRFEGRNRRPPKDPINALLSFVYTLLTLEVLTAVKVVGLDPYLGALHAVEYGRPSLPCDLVEEWRSFLGDRLVLGLVNRRVIGPDDFVYRKVACIDGVDEEDLKQRRPVEMKPKIARAFLEAYERWMTTRVTLPDTGIGTDYRGLIRHQVWNFCRCLTGERDAYEPFMWSKVT
>NZ_CP040098.1|WP_170180389.1|3165445_3166645_-|DNA-primase
MDEPFALMRRREAALERFLNLFCGREDCFARQWADRKEGTQGYVPVRRPMTTADVLDHVQGRKTYGIYLLQRDSRVRLGVVDADLASQLRGGKLTAAQREQVRREKDYLLTRLPEMAQERGLPCLTEFSGGKGFHFWFFFQAPLEAAPVREALRNLVKRVAPDLSTFNLEVFPKQDRLAGKGLGNLVKLPLGIHRATGKPSFFLHVADRSPWVQMEALAKVPAIRKEAVERAAGGSDPAQVVVHPRHAEWAKAFPELAVLSERCAALGQILAGCRQSRTLSVREEKVLLGTVGFLPRARTLLHHVFRELPDYNPHLLDYKLSRLRGTPLGCKRIHSLLDMAGDLCTFSKPSPYPHPLLHWPEWSDEAAGPKSEKVSNLRDAIEVLRDAMETVTRFLPPP
>NZ_CP040098.1|WP_137425499.1|3167452_3168493_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MRFWDQLASFRCLRLAVKLRARTRVDLPAYRGSAIRGAFGVALKRCTCALPRRSCNDCLLRQRCLYTYVFETQPGETADAMQRYAAAPHPFVFDLEVGEEEVVSPGHSFSFGMTLFGRAVDGLPYLVHAIKEMGNLGIGKGRGTFDLEQVETLDAAGRPVDNLYMKGVLQPPRALLDISHALDAFPEGKVELVRLHFITPVRLQTSGKLCRQLDFPLLVRTILQRLENLQRFHCGNESALDWGDWMEQASKVDRLSQEARWYDWERYSRRQDRRMKLGGLLGPVTFRGPVEAFLPLLLLGSWVHIGKNTTFGLGRYHVEPIGSATATEGETAGLFRVPRSVHCAGS
>NZ_CP040098.1|WP_137425500.1|3168557_3171089_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MTFTMKEMVLGALLHDVGKILQRAYDSVEDVTGQRLDLESTLCPVRDGHYSHKHVLYTNAFFDLMRQEGLRFPEDIDIGVVESIASYHHKPEACDVPTAAWMCTLADWYSAGMDRRPDEEAGLTAKSRQAFRKIPLRCIFDEVVLDVERLGRPGRHAYRLGTLDPEDPESLIPVEWPQDGIDSELPEHYKAVWENFWKDFKEIARRADSLSFRLFEEMLLGLLERYTWAIPSSTMDSPDISLHDHSRTTAAIAACLHRYHDVQGQLQDLMAVRNKEQPKFRFLAGDLSGIQNTLFTLETQGVKGVNKILRSRSFMLGALTEAAVLELLEVFGLPLSVVLQQAGGRFLLLLPALEDCEPTVGKLRRDFDGWLLEHYTGTLSLNLALSDPFSGADFEPRRLREVMAQLGASIDRAKQRPLASCSQGVLKREFPLDKACAACGIRPADPKSENGTRCMTCEREFGLGRRLVRAKSLVWAKLLPPQWHPVPIFGLKLALLEKQPEEVPEGAVSIKRMETGDNGIPWAARVLANHIPVFPDAYALKDPRYQGIEGGEAEPGDPKSFQHIAAESLELDEHGGFRGKSFLGLLKADVDFLGFIFSSGLRRSGSELDRFSLSRVAQLSRMMDLFFTGYLKGLLHREFPDTYTVYAGGDDLLLIGPWRQTMALASRVNESFRSYTGWNPNITLSAGVTLLRPNYPVNRAVKEAEDFLERAKDSGRNRVCALIQKPIAWDRYRDRLEDADWIHHKMHGPDPVSTGFVYRLLNLTADAEAFVVGGNLGKAGWRARLAYHLARNVKARNQMERERQIVEWLKRLGLDDQLRLIQDPHLIFEWRLPLQIALYRNRS
>NZ_CP040098.1|WP_137425501.1|3171105_3171591_+|type-III-A-CRISPR-associated-protein-Csm2
MNGSNRNPQPRRSGGQVPKTGDGGNQLPVGRPIRYFQDAEKKKLDPSLVDEKARDWARSFSSRLKSTQMRRFYDEFKAIERKILQGNNVQEHQSNFERDLALIRLFKAKAVYAEKRNVAPRDFTQFIFDHMVSIQDVRDFQAFMKVFEAVVAFHRFYAQDN
>NZ_CP040098.1|WP_137425502.1|3171603_3172332_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MKLVATKIITGHVEVLTGLHIGAGKDAIEIGGVDSPVVKNPYTGEPYIPGSSLKGKLRCLMEWATNRVRDDGEIWDGSEESDPDRLAQDPVLRIFGTTNKKWNAGPTRLIVRDSALNANWRQGLVERGLPLTEEKFENNINRIQGKAGVGPRKTERVPAGAIFDMTMAYRVFDTGDEGRIDEECFQAFLKVMRLLEHDALGGSGSRGYGRVRFANLQINGEDIQEKFQAIAPEDIIALRRSA
>NZ_CP040098.1|WP_137425503.1|3172333_3173275_+|hypothetical-protein
MPTYRITLTLSSPLATPLVSGTIWGHLAWALRYLEGERALEDWLDEQDRRPWLLSSQMPAGMLPRPLLKPSGRSGISGSVEEMQREKTAGKFAYIPESTFLKLRNGMSEEALIDTLKHHDGYIVSAKGFKPRGLKAHNSIDRSTGTTPETGGLFFEEVIFPGPDGRRQIFLQAGEPCEGQLERLLTFVGETGFGSNASTGNGHFQWEIEEEKELFSTGGNRAMSLSHGVISENMRASSYKQHVHFGKLGGDLAKGGYSPFKYPILMAQPGTTFDPADTGPFGAIIKGVHHDPALAQVRHYAMHLPISFTEVDS
>NZ_CP040098.1|WP_137425504.1|3173271_3174438_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTTYAFRAYALTPIHVGSGQEIDPLAFVLLNKRLVHFNAADVVKDLPEDERQRFLQILDRADLRALQSFLKSHVAADRHGLVTVDVSERFKTAYEQRASNPDRQFRVEMMPRNPHSGKAFLPGSSIKGAIRTAVVNYFANIDPRTKSSVEQAMRVAGAPQNKAQILEEAALGRKQSQTERDVFRFIEVEDVVLPDASTRIDRAVNWNPRKPGSENIQMWVERVKARADEPGVPQFELRLHMDTQAMHHPKVREQLGRTLDFDTLIEACRRFYWGRMVAEGEAFDGKERQGKSWKAIYDLFPKGKTPEGDIVPISPPKSYWCTAKRKRILLRVGRFSHFESLSVDHFRQGYNVQARRPIQDMGSTRTRCEMENGLPLMPFGWLLLTLDL
>NZ_CP040098.1|WP_137425505.1|3174683_3175094_+|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO
MPVVLEPIGVVRTEAAEIPHHWSVSDVEGTLVIDEAYREGLKDIRPGDRIVVIFHFHRSPPFSSEYLVQKPPHREKRMGVFSICSPRRPNPIGLSVLEVLETDGTRIRVKGVDMLDGTPILDIKPFVTGRKTPSGD

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Crispr_ID: NZ_CP040098_30

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040098_30

3223802-3223913

Orphan

Consensus_repeat	Method
GGGGAAATAGAATTTCCACCTTGTTCCCAAGCTCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040098_30

>merge|NZ_CP040098|30|3223802-3223913|CRISPRCasFinder
GGGGAAATAGAATTTCCACCTTGTTCCCAAGCTCCAGCCGGGACCTGCGCTGGCGCAACCGCGTGCTTGGCTTTGGGGAAATAGAATTTCCACCTTGTTCCCAAGCTCCAGC

>NZ_CP040098|30|30|3223802-3223913|CRISPRCasFinder
GGGGAAATAGAATTTCCACCTTGTTCCCAAGCTCCAGC	CGGGACCTGCGCTGGCGCAACCGCGTGCTTGGCTTT
GGGGAAATAGAATTTCCACCTTGTTCCCAAGCTCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040098.1\|WP_137425549.1\|3232499_3233324_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|379227
NZ_CP040098.1\|WP_170180392.1\|3212625_3213087_-\|ferritin-family-protein	unknown	unknown	gnl\|CDD\|153104
NZ_CP040098.1\|WP_137425545.1\|3225993_3228399_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP040098.1\|WP_137425551.1\|3234194_3235355_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NZ_CP040098.1\|WP_137425540.1\|3220126_3220681_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|273139
NZ_CP040098.1\|WP_137425541.1\|3223071_3223584_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP040098.1\|WP_137425536.1\|3215656_3217033_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP040098.1\|WP_137425877.1\|3221063_3223022_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP040098.1\|WP_137425542.1\|3224244_3224442_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP040098.1\|WP_170180393.1\|3218355_3218574_-\|DUF4911-domain-containing-protein	unknown	unknown	gnl\|CDD\|379806
NZ_CP040098.1\|WP_137425535.1\|3215029_3215530_-\|bifunctional-nuclease-family-protein	unknown	unknown	gnl\|CDD\|376830
NZ_CP040098.1\|WP_137425534.1\|3213280_3215017_-\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
NZ_CP040098.1\|WP_137425544.1\|3224843_3225854_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP040098.1\|WP_137425548.1\|3229485_3232476_+\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|223124
NZ_CP040098.1\|WP_137425550.1\|3233327_3234182_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
NZ_CP040098.1\|WP_137425547.1\|3228916_3229465_+\|manganese-efflux-pump	unknown	unknown	gnl\|CDD\|308338
NZ_CP040098.1\|WP_137425537.1\|3217078_3217873_-\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
NZ_CP040098.1\|WP_137425546.1\|3228415_3228799_+\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|274060
NZ_CP040098.1\|WP_137425543.1\|3224487_3224841_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP040098.1\|WP_137425539.1\|3218816_3220127_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040098.1\|WP_137425549.1\|3232499_3233324_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|379227	pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase domain. This family captures members that are not found in pfam00310, pfam07685 and pfam13230.	3.30158e-106
NZ_CP040098.1\|WP_170180392.1\|3212625_3213087_-\|ferritin-family-protein	gnl\|CDD\|153104	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.	8.73337e-25
NZ_CP040098.1\|WP_137425545.1\|3225993_3228399_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP040098.1\|WP_137425551.1\|3234194_3235355_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	9.10692e-141
NZ_CP040098.1\|WP_137425540.1\|3220126_3220681_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	9.45984e-24
NZ_CP040098.1\|WP_137425541.1\|3223071_3223584_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	6.94325e-86
NZ_CP040098.1\|WP_137425536.1\|3215656_3217033_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP040098.1\|WP_137425877.1\|3221063_3223022_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP040098.1\|WP_137425542.1\|3224244_3224442_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.65708e-23
NZ_CP040098.1\|WP_170180393.1\|3218355_3218574_-\|DUF4911-domain-containing-protein	gnl\|CDD\|379806	pfam16256, DUF4911, Domain of unknown function (DUF4911). This family consists of uncharacterized proteins around 75 residues in length and is mainly found in various Thermotogav species. The function of this family is unknown.	6.59183e-16
NZ_CP040098.1\|WP_137425535.1\|3215029_3215530_-\|bifunctional-nuclease-family-protein	gnl\|CDD\|376830	pfam02577, DNase-RNase, Bifunctional nuclease. This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site.	5.19014e-61
NZ_CP040098.1\|WP_137425534.1\|3213280_3215017_-\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
NZ_CP040098.1\|WP_137425544.1\|3224843_3225854_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP040098.1\|WP_137425548.1\|3229485_3232476_+\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|223124	COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism].	9.83119e-168
NZ_CP040098.1\|WP_137425550.1\|3233327_3234182_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	4.66845e-80
NZ_CP040098.1\|WP_137425547.1\|3228916_3229465_+\|manganese-efflux-pump	gnl\|CDD\|308338	pfam02659, Mntp, Putative manganese efflux pump. MntP is a family of bacterial proteins with a signal peptide and four transmembrane domains. It is a putative manganese efflux pump, since deletion of the gene leads to profound manganese sensitivity and elevated intracellular manganese levels in bacteria. Manganese is a highly important trace nutrient for organisms from bacteria to humans, and acts as an important element in the defense against oxidative stress and as an enzyme cofactor.	4.34e-47
NZ_CP040098.1\|WP_137425537.1\|3217078_3217873_-\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	7.70038e-11
NZ_CP040098.1\|WP_137425546.1\|3228415_3228799_+\|PilZ-domain-containing-protein	gnl\|CDD\|274060	TIGR02266, gmx_TIGR02266, Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.	4.57461e-13
NZ_CP040098.1\|WP_137425543.1\|3224487_3224841_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.35493e-59

>NZ_CP040098.1|WP_137425541.1|3223071_3223584_+|translation-initiation-factor-IF-3
MSKQQENVNEKIRALQVRVIGSDGSQLGILPIKQALEIAREEGLDLVEVAPNAEPPVCKVMDYGKYKYQQSKRSQEAKKKQTVIQVKEVKLRPKTDEHDVQVKLSYIRRFLAQKDKAKVTVLFRGREIAYIDRGRMVLDRILQELQDEVVVELPPKMEGRNLVMILAPKG
>NZ_CP040098.1|WP_137425877.1|3221063_3223022_+|threonine--tRNA-ligase
MTTQPVESLETVKIEFPGGERRDFPKGTTVKEVLAAAGGKPDGWVAAKVNGRLVDLAAPITEGAMVEAVRIDSPEGLEILRHSASHVMAQAVKKLFPEAKVAIGPAIENGFYYDFQVDRPFTTEDLEKIEAAMKEIIQARIPFRRRELPREEAIRLFEQRKETYKVELLQELEAPTVSIYEQGDFVDLCRGPHVPDTGFIKAYKLISVAGAYWRGDERNVMLQRIYGTAFPDGKALKKYLNFLEEAQRRDHRRLGRELDLFSFSDEVGAGMVIYHPKGALLRHILEAFEKREHLKRGYQMVIGPTLLKTELWKRSGHFDNYRENMYFTEIDNQSYGIKPMNCLAHMLIYKSKVRSYRDLPIRYFELGTVHRHEKSGVLHGLLRVRQFTQDDAHILCMPEQLNAEIQAIIDFVIEVMDLFGFSYEMEVSTRPEKSIGTEEDWERATRALIGALEGKGLPYTICHGEGAFYGPKIDVKLKDALERRWQCATIQCDFTLPERFDLTYVGADGERHRPVMLHRVILGALERFIGVLIEHYAGAFPSWLAPVQAVVVTVTDRQLEFARNVHAELRALGVRVELDERNEKLGFKIREAQMQKIPYMLVVGDQEVEAGGVRPRRRDGKSLDITTPREFAELLEQECREATGGRVGLGMI
>NZ_CP040098.1|WP_137425540.1|3220126_3220681_+|CDP-alcohol-phosphatidyltransferase-family-protein
MTIPNLITLIRILLTPVLIWLLLDARLGEALAVFFVAGVTDGLDGFIARVFHQKSRLGAYLDPLADKLLLVSSFILLGHLDLLPDWLVIITVSRDALIVIGVLTLMFHQVPVAIHPSLLSKLTTLVQILTVMAILAAPYFSPLLWVTQGLISATAAFSVASGLHYIVYGLRLWDAARNGDKEQA
>NZ_CP040098.1|WP_137425539.1|3218816_3220127_+|hypothetical-protein
MGRRVRRKFIAAVLIVFTGFCARIAWSQSGTSTFFAQGIAVYDERDQARSREEALNDLMIQGVTQGIGVFLKPSELVRQNALLKKEILSKPQRYVQSYRILSEQPSGGSYRIQGQVTVAMETLRADLEALSLSVEGTAKPVPVPSPAAASAPASEGNRQSLPEGLPHARDLLWVVSENWDGTWVVPTSDTPSRTPFHESLLMDAEDYLWTLDVPSQGDVVADASGNVPLYDALQTARERGKPILVMGRVFSQTTDAGIRTVQVNLQIVDVASESVLGSLDHSWPLAGDLNEGIVYMASLVVPRIDALLAAAGERGRSYTVGQVSAVPDEWGAQRQWNVVLRSDHAYSQWEMLEELLRRQSSEVRVEGLELKGGEIRAFVSGVSYREIESLSGVKLRDGKALHVRGVERETRSLLLECVPAPEEPAVPFDEPAPESR
>NZ_CP040098.1|WP_170180393.1|3218355_3218574_-|DUF4911-domain-containing-protein
MQGTVFLGFVDPRTIHFLSSTLEAYEGVAVVTTVDSDLGLVRIHAAPDCEDDVLAIIGAESKFTGWVPAEPA
>NZ_CP040098.1|WP_137425537.1|3217078_3217873_-|cyclic-nucleotide-binding-domain-containing-protein
MTTSKRNRHLSAPEEERPDYRFDVRTYDEGDIVLCAGQEVSNFYVILDGSVKVTRDGRKIRVLGEQDVFGMECLVEPHFPYTVQAVTAARIAIYDVEAVDYFIARTPRMARTILLSVVKQLVDTGEVVFEDREVQLPQDVEIRFFGDGERVVHEGSQGREFFRLVSADGGLRVTRGGLEVGRIERPGTFFGAMACLLRLPWKASVTSVGESTVQVFPADRLLSFAREFPDLAVDLIQRLSSRLVEMNRNLIAKGHPENEWDDLL
>NZ_CP040098.1|WP_137425536.1|3215656_3217033_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MHEKSAEAAVGACPRALYVQTFGCQMNEYDSMRVAWLLENRGYRRVDDPDRADVIFLNTCSVREKAEQKVYSLVGRLRKLKHRNPDLKIIVAGCVAQQLGEKLLERFPHLDLVVGTRGVGAVPDLLDRLWQDGNRTAYLPDDEGETNRHYPPAGGRPLRSGVVAPVTIMQGCDNFCTYCIVPYVRGRERSRPSGDVLREIKALEDGGAREVLLLGQNVNSYGRGLSERIDFSELIRKIAGETNLSRIRFTTSHPKDLTESLIRCFTEIPVLCKHIHLPFQAGSDLVLRRMNRRYTAADYEDKVRRLRDACPEIGLSADVMVGFPGESDEDFEKTLELMERIRFDTLFSFRYSDRPFARSSGFSGKVPEDVKSRRLAILQGLQAEITLEKNRLEIGGIREVLVEGPSRAGGGQFTGRTQQNRIVNFQGDETLVGRCVKVRITDAFSHSLRGELNGGAVD
>NZ_CP040098.1|WP_137425535.1|3215029_3215530_-|bifunctional-nuclease-family-protein
MYRQMTVSSLVMDQQTNTPVVILKDPVTETHLPIWIGLLEATSIATELEKIRFPRPMTHDLLKNVLEHLNVTVERIEVCDLRDNTYYALIHLRVDDKLSSIDSRPSDAIAIALRTNAPIFVREEVLQKSQKSVSQEDKTMFRSEDKEQWEEILDKLDPEDFGKYKM
>NZ_CP040098.1|WP_137425534.1|3213280_3215017_-|adenine-deaminase
MKRDRRSLERLLRVAAGEVPAECCLRGGSIVNVHTGAVERADLAVHDGCIVGIGRYEARRVVDASGLYIAPGFIDGHIHIESSLLHPSGFAAAVLPRGTTAVVCDPHEIANVFGVEGIRYFLQATERLPLDVYLTLPSCVPASPLETSGAALSAADLASLLPHPRIVGLGEMMNFPGVIAAVPDVLEKLVLFQDLHMDGHAPLLTGNALNAYVLAGIATDHESTQLEEAREKLARGLRLMIREGSQSRDMAALLPAVSDATWPSCLLVTDDRHPDDLLHDGHMDALVNRAVDLGLDPVRAIAMASRTPAETFGLKRRGALVPGARADFSLSASLHPWKPVSVYKNGVEVVRDGKVLVDLENGPSPAPPPSPMELGPMSSDLFALSGAPDREVKVIEVVEGSLLTRCVHAVPKTDGGRLVADTGRDILKLAVFNRYGPRTGQPRRGIGFVKGFGLTRGALASTIAHDSHNLIAVGASDAAMAAVCEAVRRVGGGLGVGDASGTLELLPLPIAGLMSLEPLDAVVDRLAALRRLARTFGCALRNPFMALSFLALPVIPELKLTDRGLVDVASFSMVSLQA
>NZ_CP040098.1|WP_170180392.1|3212625_3213087_-|ferritin-family-protein
MSTISCRSFDDIVNFAIKKEESAMDFYRQCAQRAKNPGIKHFFEEMVDEERKHRDMLKDLNPYGLEAFKLEKVEDLKISDYLLDVPFREDLTYQEALTLAMKKEEKSHAFYEAWKGKCLHEKTAKIFEILAQEETKHKRKLETLYDEEILGWD
>NZ_CP040098.1|WP_137425542.1|3224244_3224442_+|50S-ribosomal-protein-L35
MPKLKTNRGAAKRFRVTGSGKFARARANKSHILTKKTRQRKRRLRRSTLVDAANVTAVRRMLPYL
>NZ_CP040098.1|WP_137425543.1|3224487_3224841_+|50S-ribosomal-protein-L20
MPRVKKAVKSRRRRKKVLDMAKGYRGGRGKLLRTAKETVERGLQFAYRDRRAKKRDFRSLWIVRINAAARMHGMSYSQFMNGLKKADVAIDRKVLAGLAVSDPEAFARLARIAKEAA
>NZ_CP040098.1|WP_137425544.1|3224843_3225854_+|phenylalanine--tRNA-ligase-subunit-alpha
MEQAVRDLLRKASEAVESAGGDVRRLDGLRVAYLGRKGELTRLFKQLAQAAPEDRPRLGKVLNEAKEHLEGILNQALQRAKAAEAGSADRIDVTLPGRRPLRGHLHPITQVTLEIESIFHRLGFETVEGPEVELDYYNFEALNIPRDHPARDMQDTFYVSEDVVLRTHTSPIQVRTMEKRRPPIRVIAPGKAYRCDSDVTHTPMFHQVEGLMVGENISFGDLKGILTVFVQQMFGPHVGLRFRPSFFPFTEPSAEVDIQCVMCRGSGCRVCSQSGWLEILGSGMVDPEVFRMVGYDPEQITGFAFGMGIERIAMLKFGIDDLRLFFENDLRFLSQF
>NZ_CP040098.1|WP_137425545.1|3225993_3228399_+|phenylalanine--tRNA-ligase-subunit-beta
MIVSLNWLRDYVDCPLSAGELATALTMAGLEVEGIHRRYETLKYVVTARIARIERHPRADRLLLCQVSDGSREYRVVCGAPNLSEGAVVPLALPGAELPSGVSIREAEIRGVRSQGMLCSQKELALGEDAAGIWLLPAYIPLGVPLAEALGLEDELLDVSITPNRGDCLSIVGIAREVAAVCGTRVRYPDIELTEDGSDVHQRAAVTVEDPEGCPRYSARLVEGVHIGPSPQWLRERLESAGLRSINNIVDVTNYVLLELGQPLHAFDFDRLEESRIVVRRAAAGERFVTLDGVERTLFDDTLLICDGRRPVAVAGIMGGLDSEIKPETTRVLIESAFFQPSCIRRSSRKLGLRTESSYRFERGVDPEGVIRALDRAAQLMAELGGGRLARGRIDVYPNRQERPKITLRVDRMNRFLGLELSTDEVAEVLGRLEMEVAPAGDRRLVVRPPSFRLDVDREVDLAEEVARLVGYNRVPVTLPSASLGCEPPSPHLRLRQALKERLAGAGFFEVLNYSFVSEKSLENLGTAPEFAEIRPIRLLNPLSEEQAVMRTSLLPGLLQTARYNFDRANIHLRLFELSRVFIPVAGESLPREEFHCAGVLAGRRDPRPLYGDEAAVDFSDVKGTVEDILDLFHLEKVEWKASDLPPYCSAAAGAVVFSGDVLIGSLGKISLKVQETFDLKWPVFYFELNFDRLFALRCERPMFQPLPRFPFVVRDMAVVVDEDLPAAEPLRFIEGQPEPLLERIEIFDCYRDPQLGTGKKSVGYRLVYRAPDRNLTDEEVNEVHERLVRKVLATFGATLR
>NZ_CP040098.1|WP_137425546.1|3228415_3228799_+|PilZ-domain-containing-protein
MTVEKNRQEGDTPSGKPAPCEVTFTYEGQTRKGHTTHFSETGMMIFCREPAPLNTKLTLTIRIPGVEKPVKLSAEVVWTNIFGSEDAITPRGMAVKFLGLDAGLARMLFEVSAKYQVYGDPYAAYYS
>NZ_CP040098.1|WP_137425547.1|3228916_3229465_+|manganese-efflux-pump
MNGLEIAFVAVALGCDAFAVGLGVGTRFCAPRQVFRLSFHFGLFQFLMPLLGWALSRNLVSVVQQWGPWVAFGLLSFIGGKMTVDGLKKDDRPPEECIDPTRGLNLVLLSLATSMDALGVGLSLGIMDRDLLRDAVVIGVVAGAMTWCAMKVGNRLSSRWGEWMEVAGGIILIGIAFNLLLA
>NZ_CP040098.1|WP_137425548.1|3229485_3232476_+|phosphoribosylformylglycinamidine-synthase
MIARLEIALKPDLFDAEGASLRRKVKDYFGWHVGGARVVKILTFDARLNRYELEAVRNEIFTNPVSQVSSFRPLAEAFDWAVWVGLRPGVRDTAGSVALEAVSDFLQRPMADDEAAYTSKLYLLSDTALDRTQVETVARELLANDIIQHWRVFSRSDWDLEAGVGMIVPKVMPAHEPRVAEIPIPSDEALRALSEERNLALNPRDIPVIRGYFLRESVLQERRRVGLSLPTDVELETISQARSDHCNHNTFRGKFHYRDLDTEETEVIDNLFKTCIQSPTLQIKEKKDWVVSVLWDNAGVARLDDDHLYVITGETHNSPSNMEAYGGALTGIVGVYRDPMGTGKGSRLIAGLYGYCVGPRDYAGPLRPHLHPRRLLDGVVEGVRDGGNKHGVPTVMGNLLYHPSYLGKCLVFVAAIGLMPRFVKGEPAEQKRPNPGDLIIMSGGRVGKDGIHGVTASSESYSESTPAGHVQIGDPYTQKKMHDFLLEARDEGLITFITDNGGGGLSSSVGESAHFAGGARVELDRVPLKYEGLDVWEIWVSESQERMTLAVRPEHLDRFMELSRLHEVESTVIGRYEATGKLHLLYREKTCAYLDLSFFAEDFPQWEFEAQWRGPKTRGLSEPVFSEPEDPAGILHRLLASPNLCSREWIQRQYDHEVQGTSVVKFLVGRNRDVPNDAVVLRPVLGSSRGLAVTQTLHPLYGIIDTYAMVAATIDESVRRLLAVGGRLDEIGGVDNFCWPNIQYDPETNPDGRYKAAQLVRANRALRDLCLAYEIPLLSGKDSMYVDGYLRGRFGERHKVSGLPTFQFTATTTVEDIRRCLTLEAKHPGDLVYLLGVTRDELGGSEYYDLFSYVGLNVPKVDPSAARDLYWTLEEAVRRELPASCRAVGKGGLAIHAAMVAFAGNLGLALDLAAVPADCSHRNDTLLFSESAGRFLVTVPPERRMDFEAIFRGLPFACVGKVMEDPRLTVRGVEGAVLFEEPISRLRASWQGLRQG
>NZ_CP040098.1|WP_137425549.1|3232499_3233324_+|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MGKVKALVLTGFGLNCDWETAHALERVGAHAERVHLNSLVTGGKTLAVYQVFVVGGGFSWADEHGAGVILAMRLKHRLGDAIREFIAKGGLILGICNGFQVLVNLGVLPAFDGVSFTREVALIHNDCGNFRDQWVHLAVNAESPCVFTRGLERLELPVRHGEGKFYAGTKVMEKLEANGQVVLRYAGADGAPAQGSFPENPNGSLNDIAGICDPSGRIFGLMPHPEAYHHWTHHPDWTLQKERLRRQNVRFSEEGIGLEIFRNAVHYASESHGA
>NZ_CP040098.1|WP_137425550.1|3233327_3234182_+|phosphoribosylglycinamide-formyltransferase
MPNDERLQTGKPAKVRLAVLVSGSGTNLQSLIDRSRQGFLNAEVVVVVSDRPGAYGLTRARDAGIHGHVVDYRSFMSGPLPAEPEEEVLDALDRRQRILKETDPSRRRSKLKRLVAAESAMIRILSAYRPDYICLAGFMRLLTPYFLDHWNREGDLRVINIHPALLPAFPGEHAYRDTFQYGCKLGGVTVHFVDEGEDTGPVIAQGAYPIWPYDDLERVERRGLQLEYEMYAQCVNWLAAGVLELEPTSSGRRRVIIRDPDYRRILGRWIEKAFAPHPDTWRRG
>NZ_CP040098.1|WP_137425551.1|3234194_3235355_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MKFIDLEAQQARVRDLMEKGIQQVLDHQQFIMGPEIGRLEETLARYVGSPHAVGCGSGTDALLLALMAFDVGPGDAVLTTPFTFIATAEVIALLGATPVFVDIEPETFNLDPEALAETLQALQSGKPGPVPSAGDRRPPVPKGVIAIDLFGIPADYERITAVAEDAGLFVVEDAAQSFGAARRGRRCGSFGAVAATSFFPAKPLGCCGDGGMCFTADADLAGRMQSIRVHGQGKDRYEHLRIGINGRLDTLQAAVLLAKFTIFPDEIERRGAVARNYGRVLRERSIPLRTPVVPEGVTPAWAQYSVLAEDSTHRDRCREALHAAGIPTAVYYPVPLHLQPAFAFLEYRKGQFPVSEDTAERIFSLPMHPYLSEEDQQRIAEVLAAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	30737-30789	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	67955-68007	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	478743-478795	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	491669-491721	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	602428-602480	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	653649-653701	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	757932-757984	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1128768-1128820	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1380966-1381018	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1417766-1417818	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1490785-1490837	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1948219-1948271	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2005383-2005435	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2448119-2448171	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2734245-2734297	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2815046-2815098	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3126296-3126348	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3327238-3327290	0	1.0
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	153076-153128	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	343724-343776	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	727042-727094	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	759401-759453	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	809152-809204	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	815964-816016	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1069478-1069530	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1155170-1155222	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1264509-1264561	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1533717-1533769	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1556100-1556152	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1967192-1967244	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1990176-1990228	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2099864-2099916	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2146047-2146099	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2409838-2409890	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2435635-2435687	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2470708-2470760	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2728679-2728731	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2734087-2734139	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2734428-2734480	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3065978-3066030	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3095113-3095165	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3123280-3123332	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3126046-3126098	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3126171-3126223	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3126421-3126473	1	0.981
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3126546-3126598	1	0.981
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	994311-994340	1	0.967
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	2812831-2812860	1	0.967
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	3128579-3128608	1	0.967
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	204012-204064	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	492706-492758	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	539141-539193	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	754226-754278	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	848308-848360	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	858200-858252	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1009694-1009746	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1111048-1111100	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1450850-1450902	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	1595532-1595584	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2029018-2029070	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2246407-2246459	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2276312-2276364	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2456267-2456319	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	2887136-2887188	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3058033-3058085	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3123154-3123206	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3331787-3331839	2	0.962
NZ_CP040098_10	10.1\|806888\|53\|NZ_CP040098\|CRISPRCasFinder	806888-806940	53	NZ_CP040098.1	3332017-3332069	2	0.962
NZ_CP040098_13	13.1\|930048\|39\|NZ_CP040098\|CRISPRCasFinder	930048-930086	39	NZ_CP040098.1	1560904-1560942	2	0.949
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	9064-9093	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	25930-25959	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	531008-531037	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	1129251-1129280	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	1318476-1318505	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	1318790-1318819	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	2728295-2728324	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	2800100-2800129	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	2887265-2887294	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	3347891-3347920	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	171462-171491	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	520371-520400	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	696449-696478	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	1069371-1069400	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	1095985-1096014	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	1116840-1116869	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	1211370-1211399	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	1560716-1560745	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	2085118-2085147	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	2311635-2311664	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	2549104-2549133	2	0.933
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP040098.1	3049850-3049879	2	0.933
NZ_CP040098_17	17.1\|1555886\|34\|NZ_CP040098\|CRISPRCasFinder	1555886-1555919	34	NZ_CP040098.1	3016915-3016948	2	0.941
NZ_CP040098_14	14.1\|994110\|63\|NZ_CP040098\|CRISPRCasFinder	994110-994172	63	NZ_CP040098.1	2979444-2979506	5	0.921
NZ_CP040098_14	14.1\|994110\|63\|NZ_CP040098\|CRISPRCasFinder	994110-994172	63	NZ_CP040098.1	2979693-2979755	5	0.921
NZ_CP040098_14	14.1\|994110\|63\|NZ_CP040098\|CRISPRCasFinder	994110-994172	63	NZ_CP040098.1	2979776-2979838	5	0.921
NZ_CP040098_14	14.1\|994110\|63\|NZ_CP040098\|CRISPRCasFinder	994110-994172	63	NZ_CP040098.1	2979859-2979921	5	0.921

1. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 30737-30789, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

2. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 67955-68007, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

3. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 478743-478795, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

4. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 491669-491721, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

5. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 602428-602480, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

6. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 653649-653701, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

7. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 757932-757984, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

8. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1128768-1128820, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

9. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1380966-1381018, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

10. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1417766-1417818, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

11. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1490785-1490837, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

12. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1948219-1948271, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

13. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2005383-2005435, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

14. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2448119-2448171, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

15. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2734245-2734297, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

16. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2815046-2815098, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

17. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3126296-3126348, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

18. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3327238-3327290, mismatch: 0, identity: 1.0

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************************************************

19. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 153076-153128, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattggcatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
**************.**************************************

20. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 343724-343776, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttgattttctcaccctcaccccaaccctctcc	Protospacer
***********************.*****************************

21. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 727042-727094, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacattaattttctcaccctcaccccaaccctctcc	Protospacer
********************.********************************

22. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 759401-759453, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattctctcaccctcaccccaaccctctcc	Protospacer
***************************.*************************

23. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 809152-809204, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaatgttctcaccctcaccccaaccctctcc	Protospacer
************************** **************************

24. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 815964-816016, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacacacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*****************.***********************************

25. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1069478-1069530, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaactttctcaccctcaccccaaccctctcc	Protospacer
*************************.***************************

26. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1155170-1155222, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacattaattttctcaccctcaccccaaccctctcc	Protospacer
********************.********************************

27. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1264509-1264561, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttgattttctcaccctcaccccaaccctctcc	Protospacer
***********************.*****************************

28. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1533717-1533769, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacataccttaattttctcaccctcaccccaaccctctcc	Protospacer
******************** ********************************

29. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1556100-1556152, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttttcaccctcaccccaaccctctcc	Protospacer
*****************************.***********************

30. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1967192-1967244, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccttcaccccaaccctctcc	Protospacer
***********************************.*****************

31. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1990176-1990228, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctcaccctcacctcaaccctctcc	Protospacer
*****************************************.***********

32. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2099864-2099916, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaaccgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
********.********************************************

33. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2146047-2146099, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttaattttctgaccctcaccccaaccctctcc	Protospacer
******************************* *********************

34. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2409838-2409890, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttagttttctcaccctcaccccaaccctctcc	Protospacer
************************.****************************

35. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2435635-2435687, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aacgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
**.**************************************************

36. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2470708-2470760, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aacgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
**.**************************************************

37. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2728679-2728731, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacgttgattttctcaccctcaccccaaccctctcc	Protospacer
***********************.*****************************

38. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2734087-2734139, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacaaacgttaattttctcaccctcaccccaaccctctcc	Protospacer
***************** ***********************************

39. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2734428-2734480, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacaaacgttaattttctcaccctcaccccaaccctctcc	Protospacer
***************** ***********************************

40. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3065978-3066030, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacattcgttaattttctcaccctcaccccaaccctctcc	Protospacer
****************** **********************************

41. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3095113-3095165, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacattaattttctcaccctcaccccaaccctctcc	Protospacer
********************.********************************

42. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3123280-3123332, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatgcgttaattttctcaccctcaccccaaccctctcc	Protospacer
******************.**********************************

43. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3126046-3126098, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatgcgttaattttctcaccctcaccccaaccctctcc	Protospacer
******************.**********************************

44. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3126171-3126223, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatgcgttaattttctcaccctcaccccaaccctctcc	Protospacer
******************.**********************************

45. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3126421-3126473, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatgcgttaattttctcaccctcaccccaaccctctcc	Protospacer
******************.**********************************

46. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3126546-3126598, mismatch: 1, identity: 0.981

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatgcgttaattttctcaccctcaccccaaccctctcc	Protospacer
******************.**********************************

47. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 994311-994340, mismatch: 1, identity: 0.967

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgagtttcagctgtagcaggaggg	Protospacer
*******************.**********

48. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 2812831-2812860, mismatch: 1, identity: 0.967

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgagtttcagctgtagcaggaggg	Protospacer
*******************.**********

49. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 3128579-3128608, mismatch: 1, identity: 0.967

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgagtttcagctgtagcaggaggg	Protospacer
*******************.**********

50. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 204012-204064, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacggtaactttctcaccctcaccccaaccctctcc	Protospacer
********************* ***.***************************

51. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 492706-492758, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgtcatacggtaattttctcaccctcaccccaaccctctcc	Protospacer
************** ****** *******************************

52. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 539141-539193, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactggttgacatacgttaatgttctcaccctcaccccaaccctctcc	Protospacer
**********.*************** **************************

53. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 754226-754278, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaaccgattgacatacgttaattttctcaccctcaccccgaccctctcc	Protospacer
********.**********************************.*********

54. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 848308-848360, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatgcgtaaattttctcaccctcaccccaaccctctcc	Protospacer
******************.*** ******************************

55. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 858200-858252, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaatcgattgacatacgttaattttctcaccctcaccccaaccctctcc	Protospacer
*******..********************************************

56. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1009694-1009746, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactggttgacatacgttaactttctcaccctcaccccaaccctctcc	Protospacer
**********.**************.***************************

57. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1111048-1111100, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgcaactgattgacatacgttaattgtctcaccctcaccccaaccctctcc	Protospacer
****.********************** *************************

58. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1450850-1450902, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacattaattttatcaccctcaccccaaccctctcc	Protospacer
********************.******** ***********************

59. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 1595532-1595584, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacattgattttctcaccctcaccccaaccctctcc	Protospacer
********************.**.*****************************

60. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2029018-2029070, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactggttgacatacgttaactttctcaccctcaccccaaccctctcc	Protospacer
**********.**************.***************************

61. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2246407-2246459, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgactgacatacgttaatttcctcaccctcaccccaaccctctcc	Protospacer
***********.****************.************************

62. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2276312-2276364, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactcattgacatacgttaattttatcaccctcaccccaaccctctcc	Protospacer
********* ******************* ***********************

63. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2456267-2456319, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaattgattgacatacgttaactttctcaccctcaccccaaccctctcc	Protospacer
*******.*****************.***************************

64. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 2887136-2887188, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aacgtaactgattgacatacgttaattttctcatcctcaccccaaccctctcc	Protospacer
**.******************************.*******************

65. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3058033-3058085, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatacattaattttatcaccctcaccccaaccctctcc	Protospacer
********************.******** ***********************

66. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3123154-3123206, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaactgattgacatgcgttaattttttcaccctcaccccaaccctctcc	Protospacer
******************.**********.***********************

67. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3331787-3331839, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaattgattgacatacgttacttttctcaccctcaccccaaccctctcc	Protospacer
*******.**************** ****************************

68. spacer 10.1|806888|53|NZ_CP040098|CRISPRCasFinder matches to position: 3332017-3332069, mismatch: 2, identity: 0.962

aatgtaactgattgacatacgttaattttctcaccctcaccccaaccctctcc	CRISPR spacer
aatgtaattgattgacatacgttacttttctcaccctcaccccaaccctctcc	Protospacer
*******.**************** ****************************

69. spacer 13.1|930048|39|NZ_CP040098|CRISPRCasFinder matches to position: 1560904-1560942, mismatch: 2, identity: 0.949

atgccattgagctgtttttaaagatgaacatcgaacatc	CRISPR spacer
atgccattgggttgtttttaaagatgaacatcgaacatc	Protospacer
*********.*.***************************

70. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 9064-9093, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

71. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 25930-25959, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

72. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 531008-531037, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

73. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 1129251-1129280, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

74. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 1318476-1318505, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

75. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 1318790-1318819, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

76. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 2728295-2728324, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

77. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 2800100-2800129, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

78. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 2887265-2887294, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

79. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 3347891-3347920, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

80. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 171462-171491, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

81. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 520371-520400, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

82. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 696449-696478, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

83. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 1069371-1069400, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

84. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 1095985-1096014, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

85. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 1116840-1116869, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

86. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 1211370-1211399, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

87. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 1560716-1560745, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

88. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 2085118-2085147, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

89. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 2311635-2311664, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

90. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 2549104-2549133, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

91. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to position: 3049850-3049879, mismatch: 2, identity: 0.933

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgcgtttcagctgtagcaggaggg	Protospacer
******** **********.**********

92. spacer 17.1|1555886|34|NZ_CP040098|CRISPRCasFinder matches to position: 3016915-3016948, mismatch: 2, identity: 0.941

ttgatgccgccatacacaccttcctggatctcga	CRISPR spacer
ttgatgccgccattcacacctccctggatctcga	Protospacer
************* *******.************

93. spacer 14.1|994110|63|NZ_CP040098|CRISPRCasFinder matches to position: 2979444-2979506, mismatch: 5, identity: 0.921

catcgaatgaaaaaccaggttgcatttatgccattgggttgtttttaaagatgaacgtcc	CRISPR spacer
catcgaatgaaaaaccgggttgcatttatgccattgggttgtttttaaagatgaacgtcg	Protospacer
****************.******************************************

94. spacer 14.1|994110|63|NZ_CP040098|CRISPRCasFinder matches to position: 2979693-2979755, mismatch: 5, identity: 0.921

catcgaatgaaaaaccaggttgcatttatgccattgggttgtttttaaagatgaacgtcc	CRISPR spacer
catcgaatgaaaaaccgggttgcatttatgccattgggttgtttttaaagatgaacgtcg	Protospacer
****************.******************************************

95. spacer 14.1|994110|63|NZ_CP040098|CRISPRCasFinder matches to position: 2979776-2979838, mismatch: 5, identity: 0.921

catcgaatgaaaaaccaggttgcatttatgccattgggttgtttttaaagatgaacgtcc	CRISPR spacer
catcgaatgaaaaaccgggttgcatttatgccattgggttgtttttaaagatgaacgtcg	Protospacer
****************.******************************************

96. spacer 14.1|994110|63|NZ_CP040098|CRISPRCasFinder matches to position: 2979859-2979921, mismatch: 5, identity: 0.921

catcgaatgaaaaaccaggttgcatttatgccattgggttgtttttaaagatgaacgtcc	CRISPR spacer
catcgaatgaaaaaccgggttgcatttatgccattgggttgtttttaaagatgaacgtcg	Protospacer
****************.******************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040098_19	19.1\|2118343\|25\|NZ_CP040098\|CRISPRCasFinder	2118343-2118367	25	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	24107-24131	4	0.84
NZ_CP040098_29	29.11\|3161262\|38\|NZ_CP040098\|CRISPRCasFinder	3161262-3161299	38	MT536174	Stenotrophomonas phage vB_SmaS-AXL_3, complete genome	43753-43790	6	0.842
NZ_CP040098_29	29.93\|3161263\|38\|NZ_CP040098\|PILER-CR	3161263-3161300	38	MT536174	Stenotrophomonas phage vB_SmaS-AXL_3, complete genome	43753-43790	6	0.842
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NC_048702	Erwinia phage vB_EamM-Bue1, complete genome	89488-89517	7	0.767
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	772910-772939	7	0.767
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	777743-777772	7	0.767
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NC_027340	Erwinia phage phiEa2809, complete genome	89681-89710	8	0.733
NZ_CP040098_16	16.1\|1456532\|30\|NZ_CP040098\|CRISPRCasFinder	1456532-1456561	30	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	31015-31044	8	0.733
NZ_CP040098_28	28.7\|3141278\|33\|NZ_CP040098\|CRISPRCasFinder,CRT	3141278-3141310	33	NZ_CP016851	Pseudomonas sp. TMW 2.1634 plasmid pL21634-2, complete sequence	47050-47082	8	0.758
NZ_CP040098_28	28.67\|3145677\|35\|NZ_CP040098\|CRISPRCasFinder,CRT,PILER-CR	3145677-3145711	35	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	389428-389462	8	0.771
NZ_CP040098_28	28.118\|3141286\|33\|NZ_CP040098\|PILER-CR	3141286-3141318	33	NZ_CP016851	Pseudomonas sp. TMW 2.1634 plasmid pL21634-2, complete sequence	47050-47082	8	0.758
NZ_CP040098_29	29.11\|3161262\|38\|NZ_CP040098\|CRISPRCasFinder	3161262-3161299	38	MT536174	Stenotrophomonas phage vB_SmaS-AXL_3, complete genome	43762-43799	9	0.763
NZ_CP040098_29	29.11\|3161262\|38\|NZ_CP040098\|CRISPRCasFinder	3161262-3161299	38	MT536174	Stenotrophomonas phage vB_SmaS-AXL_3, complete genome	43771-43808	9	0.763
NZ_CP040098_29	29.11\|3161262\|38\|NZ_CP040098\|CRISPRCasFinder	3161262-3161299	38	MT536174	Stenotrophomonas phage vB_SmaS-AXL_3, complete genome	43780-43817	9	0.763
NZ_CP040098_29	29.28\|3162523\|32\|NZ_CP040098\|CRISPRCasFinder	3162523-3162554	32	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	484593-484624	9	0.719
NZ_CP040098_29	29.93\|3161263\|38\|NZ_CP040098\|PILER-CR	3161263-3161300	38	MT536174	Stenotrophomonas phage vB_SmaS-AXL_3, complete genome	43762-43799	9	0.763
NZ_CP040098_29	29.93\|3161263\|38\|NZ_CP040098\|PILER-CR	3161263-3161300	38	MT536174	Stenotrophomonas phage vB_SmaS-AXL_3, complete genome	43771-43808	9	0.763
NZ_CP040098_29	29.93\|3161263\|38\|NZ_CP040098\|PILER-CR	3161263-3161300	38	MT536174	Stenotrophomonas phage vB_SmaS-AXL_3, complete genome	43780-43817	9	0.763
NZ_CP040098_29	29.110\|3162524\|32\|NZ_CP040098\|PILER-CR	3162524-3162555	32	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	484593-484624	9	0.719
NZ_CP040098_29	29.11\|3161262\|38\|NZ_CP040098\|CRISPRCasFinder	3161262-3161299	38	AX059140	Sequence 1 from Patent WO0075335	60928-60965	10	0.737
NZ_CP040098_29	29.11\|3161262\|38\|NZ_CP040098\|CRISPRCasFinder	3161262-3161299	38	NC_004735	Rhodothermus phage RM378, complete genome	60928-60965	10	0.737
NZ_CP040098_29	29.93\|3161263\|38\|NZ_CP040098\|PILER-CR	3161263-3161300	38	AX059140	Sequence 1 from Patent WO0075335	60928-60965	10	0.737
NZ_CP040098_29	29.93\|3161263\|38\|NZ_CP040098\|PILER-CR	3161263-3161300	38	NC_004735	Rhodothermus phage RM378, complete genome	60928-60965	10	0.737
NZ_CP040098_29	29.11\|3161262\|38\|NZ_CP040098\|CRISPRCasFinder	3161262-3161299	38	NC_048106	Synechococcus phage S-CBWM1, complete genome	68863-68900	11	0.711
NZ_CP040098_29	29.93\|3161263\|38\|NZ_CP040098\|PILER-CR	3161263-3161300	38	NC_048106	Synechococcus phage S-CBWM1, complete genome	68863-68900	11	0.711

1. spacer 19.1|2118343|25|NZ_CP040098|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 4, identity: 0.84

cgcaagtcgtaggagcgatccaagt	CRISPR spacer
aacaagtcttgggagcgatccaagt	Protospacer
 .****** *.**************

2. spacer 29.11|3161262|38|NZ_CP040098|CRISPRCasFinder matches to MT536174 (Stenotrophomonas phage vB_SmaS-AXL_3, complete genome) position: , mismatch: 6, identity: 0.842

aggaggaagaaggggaggaagaggaggaagatactggt--	CRISPR spacer
aagaggaggaagaggaggaagaggaggaagat--tgatcc	Protospacer
*.*****.****.*******************  **.*

3. spacer 29.93|3161263|38|NZ_CP040098|PILER-CR matches to MT536174 (Stenotrophomonas phage vB_SmaS-AXL_3, complete genome) position: , mismatch: 6, identity: 0.842

aggaggaagaaggggaggaagaggaggaagatactggt--	CRISPR spacer
aagaggaggaagaggaggaagaggaggaagat--tgatcc	Protospacer
*.*****.****.*******************  **.*

4. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to NC_048702 (Erwinia phage vB_EamM-Bue1, complete genome) position: , mismatch: 7, identity: 0.767

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
gcacatccagtttcagctgcagcaggtcgt	Protospacer
. *** * ******************  *

5. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
ggaagccgagttgcagcggcagcaggagga	Protospacer
.** . ****** **** ***********.

6. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.767

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
gggcaacgaggttcagctgcagcaggtgct	Protospacer
.*.**.**** *************** *

7. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to NC_027340 (Erwinia phage phiEa2809, complete genome) position: , mismatch: 8, identity: 0.733

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
gcacatccagtttcagctgcagcaggtcat	Protospacer
. *** * ******************  .

8. spacer 16.1|1456532|30|NZ_CP040098|CRISPRCasFinder matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

agacagcgagtttcagctgcagcaggaggg	CRISPR spacer
agacagcgagttttggctgcagcgtcgtga	Protospacer
*************..********.  . *.

9. spacer 28.7|3141278|33|NZ_CP040098|CRISPRCasFinder,CRT matches to NZ_CP016851 (Pseudomonas sp. TMW 2.1634 plasmid pL21634-2, complete sequence) position: , mismatch: 8, identity: 0.758

---gactcagcaaccctgctcgggcttttgctcgag	CRISPR spacer
ccagac---aaaaccctgcccgggattttgctcgaa	Protospacer
   ***   . ********.**** **********.

10. spacer 28.67|3145677|35|NZ_CP040098|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 8, identity: 0.771

attacatcg-gcttttcggcctgaccgccgaaaacg	CRISPR spacer
-ccagttcgcgcttttcgacctgaccgccgacaacc	Protospacer
 ..*  *** ********.************ ***

11. spacer 28.118|3141286|33|NZ_CP040098|PILER-CR matches to NZ_CP016851 (Pseudomonas sp. TMW 2.1634 plasmid pL21634-2, complete sequence) position: , mismatch: 8, identity: 0.758

---gactcagcaaccctgctcgggcttttgctcgag	CRISPR spacer
ccagac---aaaaccctgcccgggattttgctcgaa	Protospacer
   ***   . ********.**** **********.

12. spacer 29.11|3161262|38|NZ_CP040098|CRISPRCasFinder matches to MT536174 (Stenotrophomonas phage vB_SmaS-AXL_3, complete genome) position: , mismatch: 9, identity: 0.763

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
aagaggaggaagaggaggaagaggaggaagaggaggaa	Protospacer
*.*****.****.****************** .  *.

13. spacer 29.11|3161262|38|NZ_CP040098|CRISPRCasFinder matches to MT536174 (Stenotrophomonas phage vB_SmaS-AXL_3, complete genome) position: , mismatch: 9, identity: 0.763

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
aagaggaggaagaggaggaagaggaggaagaggaggaa	Protospacer
*.*****.****.****************** .  *.

14. spacer 29.11|3161262|38|NZ_CP040098|CRISPRCasFinder matches to MT536174 (Stenotrophomonas phage vB_SmaS-AXL_3, complete genome) position: , mismatch: 9, identity: 0.763

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
aagaggaggaagaggaggaagaggaggaagaggaggaa	Protospacer
*.*****.****.****************** .  *.

15. spacer 29.28|3162523|32|NZ_CP040098|CRISPRCasFinder matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

catgttgatggttccgtttgaggcgcaggtag	CRISPR spacer
gatccagaaggtcccgtttgaggcgcaggcca	Protospacer
 ** . ** ***.****************. .

16. spacer 29.93|3161263|38|NZ_CP040098|PILER-CR matches to MT536174 (Stenotrophomonas phage vB_SmaS-AXL_3, complete genome) position: , mismatch: 9, identity: 0.763

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
aagaggaggaagaggaggaagaggaggaagaggaggaa	Protospacer
*.*****.****.****************** .  *.

17. spacer 29.93|3161263|38|NZ_CP040098|PILER-CR matches to MT536174 (Stenotrophomonas phage vB_SmaS-AXL_3, complete genome) position: , mismatch: 9, identity: 0.763

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
aagaggaggaagaggaggaagaggaggaagaggaggaa	Protospacer
*.*****.****.****************** .  *.

18. spacer 29.93|3161263|38|NZ_CP040098|PILER-CR matches to MT536174 (Stenotrophomonas phage vB_SmaS-AXL_3, complete genome) position: , mismatch: 9, identity: 0.763

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
aagaggaggaagaggaggaagaggaggaagaggaggaa	Protospacer
*.*****.****.****************** .  *.

19. spacer 29.110|3162524|32|NZ_CP040098|PILER-CR matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

catgttgatggttccgtttgaggcgcaggtag	CRISPR spacer
gatccagaaggtcccgtttgaggcgcaggcca	Protospacer
 ** . ** ***.****************. .

20. spacer 29.11|3161262|38|NZ_CP040098|CRISPRCasFinder matches to AX059140 (Sequence 1 from Patent WO0075335) position: , mismatch: 10, identity: 0.737

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
ctcaggaagaagaggaggaagaagaggaagaaatcgaa	Protospacer
   *********.*********.******** *..*.

21. spacer 29.11|3161262|38|NZ_CP040098|CRISPRCasFinder matches to NC_004735 (Rhodothermus phage RM378, complete genome) position: , mismatch: 10, identity: 0.737

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
ctcaggaagaagaggaggaagaagaggaagaaatcgaa	Protospacer
   *********.*********.******** *..*.

22. spacer 29.93|3161263|38|NZ_CP040098|PILER-CR matches to AX059140 (Sequence 1 from Patent WO0075335) position: , mismatch: 10, identity: 0.737

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
ctcaggaagaagaggaggaagaagaggaagaaatcgaa	Protospacer
   *********.*********.******** *..*.

23. spacer 29.93|3161263|38|NZ_CP040098|PILER-CR matches to NC_004735 (Rhodothermus phage RM378, complete genome) position: , mismatch: 10, identity: 0.737

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
ctcaggaagaagaggaggaagaagaggaagaaatcgaa	Protospacer
   *********.*********.******** *..*.

24. spacer 29.11|3161262|38|NZ_CP040098|CRISPRCasFinder matches to NC_048106 (Synechococcus phage S-CBWM1, complete genome) position: , mismatch: 11, identity: 0.711

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
ttgtggaggaagaggaggaagaggaggaagaggtcgca	Protospacer
  * ***.****.****************** ...*

25. spacer 29.93|3161263|38|NZ_CP040098|PILER-CR matches to NC_048106 (Synechococcus phage S-CBWM1, complete genome) position: , mismatch: 11, identity: 0.711

aggaggaagaaggggaggaagaggaggaagatactggt	CRISPR spacer
ttgtggaggaagaggaggaagaggaggaagaggtcgca	Protospacer
  * ***.****.****************** ...*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

336216 : 345121

Planktothrix_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137422985.1\|336216_336990_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.6e-16	29.4
WP_137422986.1\|336982_337687_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-14	30.6
WP_137422987.1\|337770_338856_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.6e-94	49.0
WP_137422988.1\|339018_339855_+	HesA/MoeB/ThiF family protein	NA	NA	NA	NA
WP_137422989.1\|339897_341415_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-39	33.5
WP_137422990.1\|341467_343456_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	C7U047	Ostreococcus_tauri_virus	9.1e-112	42.9
WP_137422991.1\|344146_345121_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	26.5

DBSCAN-SWA_2

633769 : 642332

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137425684.1\|633769_635710_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.4e-63	31.1
WP_137423236.1\|635839_636484_+	hypothetical protein	NA	NA	NA	NA
WP_137423237.1\|636529_636733_+	hypothetical protein	NA	NA	NA	NA
WP_137423238.1\|636780_637059_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2L1IV28	Escherichia_phage	2.3e-21	53.3
WP_137423239.1\|637069_637357_+	HigA family addiction module antidote protein	A0A2P1MXE5	Escherichia_phage	5.8e-12	45.5
WP_137423240.1\|637455_637641_+	hypothetical protein	NA	NA	NA	NA
WP_170180157.1\|637628_637853_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_137423241.1\|638213_638657_-	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	2.0e-19	42.1
WP_137423242.1\|639008_639662_+	lactate utilization protein	NA	NA	NA	NA
WP_137423243.1\|639690_640608_+	FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	6.6e-25	30.5
WP_137423244.1\|640604_641354_+	HAD family hydrolase	NA	NA	NA	NA
WP_137423245.1\|641387_642332_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-09	23.2

DBSCAN-SWA_3

717919 : 757536

Staphylococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137423299.1\|717919_719245_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_137423300.1\|719509_719776_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_170180162.1\|720647_721415_+	ABC transporter permease	NA	NA	NA	NA
WP_137423302.1\|721415_722147_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.2e-10	22.3
WP_170180163.1\|722590_723802_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_170180409.1\|723838_725587_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	3.8e-29	26.2
WP_137423304.1\|725583_726909_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_137423305.1\|727224_727494_+	four helix bundle protein	NA	NA	NA	NA
WP_137423306.1\|728163_729405_+	acyltransferase	B5WZU0	Pseudomonas_phage	1.6e-18	27.0
WP_137423307.1\|729564_732585_+	hypothetical protein	NA	NA	NA	NA
WP_137423308.1\|733138_733672_+\|transposase	transposase	NA	NA	NA	NA
WP_137423309.1\|734039_734234_+	Type I secretion system protein TolC	NA	NA	NA	NA
WP_137423310.1\|734251_736048_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_137423311.1\|736040_736331_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_137423312.1\|738052_738319_+	hypothetical protein	NA	NA	NA	NA
WP_137423313.1\|740090_740498_-	hypothetical protein	NA	NA	NA	NA
WP_137423314.1\|740939_744011_+	hypothetical protein	NA	NA	NA	NA
WP_137423315.1\|744208_744742_+\|transposase	transposase	NA	NA	NA	NA
WP_137423316.1\|745277_746627_-\|transposase	transposase	NA	NA	NA	NA
WP_170180164.1\|746769_746916_-	hypothetical protein	NA	NA	NA	NA
WP_137423317.1\|747241_748366_+	class I SAM-dependent methyltransferase	A0A0E3FKS1	Synechococcus_phage	2.2e-09	30.1
WP_137423318.1\|748362_751596_+	glycoside hydrolase family 99-like domain-containing protein	NA	NA	NA	NA
WP_137423319.1\|751945_752479_+\|transposase	transposase	NA	NA	NA	NA
WP_137423320.1\|753161_754112_+	hypothetical protein	NA	NA	NA	NA
WP_137423321.1\|754695_754881_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_137423322.1\|755030_756047_+	hypothetical protein	NA	NA	NA	NA
WP_137423323.1\|756425_756809_+	DUF4277 domain-containing protein	NA	NA	NA	NA
WP_170180410.1\|757002_757536_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2563897 : 2597899

Enterobacteria_phage(33.33%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137425813.1\|2563897_2564644_+\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_137425814.1\|2565152_2566274_+	N-acetyltransferase	NA	NA	NA	NA
WP_137425815.1\|2566455_2567265_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_137425044.1\|2567545_2569312_+	fatty acyl-AMP ligase	NA	NA	NA	NA
WP_137425045.1\|2569316_2570285_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_137425046.1\|2570759_2571029_+	acyl carrier protein	NA	NA	NA	NA
WP_137425816.1\|2571059_2572244_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	V5LQ39	Emiliania_huxleyi_virus	7.5e-37	30.9
WP_137425047.1\|2572364_2573585_+	glycosyltransferase	NA	NA	NA	NA
WP_137425817.1\|2573634_2574801_+	glycosyltransferase	NA	NA	NA	NA
WP_170180325.1\|2575094_2575295_-	CooT family nickel-binding protein	NA	NA	NA	NA
WP_170180326.1\|2575413_2576169_-	ATP-binding protein	NA	NA	NA	NA
WP_137425050.1\|2576719_2577505_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.3e-97	69.7
WP_137423332.1\|2577495_2578683_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	7.1e-112	53.1
WP_137425051.1\|2579909_2580164_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_137425818.1\|2580166_2580379_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_137425052.1\|2580467_2581178_+	hypothetical protein	NA	NA	NA	NA
WP_137425053.1\|2581447_2585272_+	SIR2 family protein	NA	NA	NA	NA
WP_137425054.1\|2585880_2587119_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.5e-45	31.3
WP_170180327.1\|2587421_2587736_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_170180328.1\|2587873_2588317_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.5e-06	29.7
WP_137425057.1\|2588338_2588680_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_137425058.1\|2588887_2590624_-	calcineurin-like phosphoesterase C-terminal domain-containing protein	NA	NA	NA	NA
WP_137425059.1\|2590746_2592069_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_137425060.1\|2592654_2593980_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_137425061.1\|2594577_2595018_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.0e-23	38.1
WP_137425062.1\|2595031_2595739_-\|transposase	transposase	NA	NA	NA	NA
WP_137425063.1\|2595954_2596338_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_170180329.1\|2596452_2596611_+	hypothetical protein	NA	NA	NA	NA
WP_137425064.1\|2596771_2597899_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040098

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection