CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP039434	Enterococcus faecalis strain SGAir0397 chromosome, complete genome	3 crisprs	csa3,cas3,cas14j,DinG,DEDDh	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039434_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039434_1

1714375-1714806

Orphan

II-A,II-B

Consensus_repeat	Method
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CRISPRCasFinder
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CRT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP039434_1

>merge|NZ_CP039434|1|1714375-1714806|CRISPRCasFinder,CRT,PILER-CR
GTGATAGTTTGTTTTTTAACAACATGGCTATAAAACTCTAATTTTTGAGTAATCGTACCAACTTGGGTTTTGGTACCATTCTAAACAACATGACTCTAAAACAATATATGTAAAGCGCTCGTGATAGCAGTCGTTTTGGTACCATTCTAAACAACATGACTCTAAAACGCTTCAGGTGTCTTCACAACTGCTTTTGATGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTGCGGACATGTGCGACTGGATAGTTGATTTGTTTTGGTACCATTCTAAACAACATGACTCTAAAACCTATTCTGAGACGATAACCAGAACGCTTTGGTTTTGGTACCATTCTAAACAACATGACTCTAAAACACTTAAAGGCGTGTTATTCGGGTATAATGAGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_CP039434|1|1|1714375-1714806|CRISPRCasFinder
GTGATAGTTTGTTTTTTAACAACATGGCTATAAAAC	TCTAATTTTTGAGTAATCGTACCAACTTGG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AATATATGTAAAGCGCTCGTGATAGCAGTC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GCTTCAGGTGTCTTCACAACTGCTTTTGAT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGCGGACATGTGCGACTGGATAGTTGATTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CTATTCTGAGACGATAACCAGAACGCTTTG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ACTTAAAGGCGTGTTATTCGGGTATAATGA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_CP039434|1|1|1714375-1714806|CRT
GTGATAGTTTGTTTTTTAACAACATGGCTATAAAAC	TCTAATTTTTGAGTAATCGTACCAACTTGG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AATATATGTAAAGCGCTCGTGATAGCAGTC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GCTTCAGGTGTCTTCACAACTGCTTTTGAT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGCGGACATGTGCGACTGGATAGTTGATTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CTATTCTGAGACGATAACCAGAACGCTTTG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ACTTAAAGGCGTGTTATTCGGGTATAATGA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_CP039434|1|1|1714441-1714806|PILER-CR
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AATATATGTAAAGCGCTCGTGATAGCAGTC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GCTTCAGGTGTCTTCACAACTGCTTTTGAT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGCGGACATGTGCGACTGGATAGTTGATTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CTATTCTGAGACGATAACCAGAACGCTTTG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ACTTAAAGGCGTGTTATTCGGGTATAATGA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039434.1\|WP_137685778.1\|1721282_1722362_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP039434.1\|WP_002401320.1\|1704711_1705923_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP039434.1\|WP_071646747.1\|1714963_1715827_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|214874
NZ_CP039434.1\|WP_070415770.1\|1701974_1704398_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP039434.1\|WP_010707351.1\|1712549_1713968_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP039434.1\|WP_048955485.1\|1704503_1704635_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039434.1\|WP_002388224.1\|1715911_1717993_-\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP039434.1\|WP_002362076.1\|1724301_1725276_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|235039
NZ_CP039434.1\|WP_002356966.1\|1718123_1718489_-\|DUF1033-family-protein	unknown	unknown	gnl\|CDD\|336361
NZ_CP039434.1\|WP_002356976.1\|1711539_1712553_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP039434.1\|WP_002362073.1\|1719288_1719804_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_CP039434.1\|WP_002360015.1\|1706978_1707959_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP039434.1\|WP_002411399.1\|1718586_1719156_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379115
NZ_CP039434.1\|WP_002356959.1\|1722587_1722932_-\|DUF1831-domain-containing-protein	unknown	unknown	gnl\|CDD\|370163
NZ_CP039434.1\|WP_033625042.1\|1722999_1724145_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP039434.1\|WP_016618437.1\|1719820_1721059_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340949
NZ_CP039434.1\|WP_085443342.1\|1708038_1709805_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP039434.1\|WP_011109517.1\|1714127_1714226_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039434.1\|WP_002360016.1\|1705951_1706857_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP039434.1\|WP_002364369.1\|1709801_1711535_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|274323

Protein	Function_ID	Function_description	E-value
NZ_CP039434.1\|WP_137685778.1\|1721282_1722362_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP039434.1\|WP_002401320.1\|1704711_1705923_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	9.69565e-122
NZ_CP039434.1\|WP_071646747.1\|1714963_1715827_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	7.23386e-27
NZ_CP039434.1\|WP_070415770.1\|1701974_1704398_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	9.70161e-174
NZ_CP039434.1\|WP_010707351.1\|1712549_1713968_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP039434.1\|WP_002388224.1\|1715911_1717993_-\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP039434.1\|WP_002362076.1\|1724301_1725276_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|235039	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional.	0
NZ_CP039434.1\|WP_002356966.1\|1718123_1718489_-\|DUF1033-family-protein	gnl\|CDD\|336361	pfam06279, DUF1033, Protein of unknown function (DUF1033). This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.	4.62165e-64
NZ_CP039434.1\|WP_002356976.1\|1711539_1712553_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	9.60464e-103
NZ_CP039434.1\|WP_002362073.1\|1719288_1719804_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	1.1162e-31
NZ_CP039434.1\|WP_002360015.1\|1706978_1707959_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	2.52576e-80
NZ_CP039434.1\|WP_002411399.1\|1718586_1719156_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	4.37526e-15
NZ_CP039434.1\|WP_002356959.1\|1722587_1722932_-\|DUF1831-domain-containing-protein	gnl\|CDD\|370163	pfam08866, DUF1831, Putative amino acid metabolism. Solution of the structure of the Lactobacillus plantarum protein from this family has indicated a potential new fold with remote similarities to TBP-like (TATA-binding protein) structures. This similarity, in combination with genomic context analysis, leads us to propose an involvement in amino-acid metabolism. The potentially novel fold is an alpha + beta fold comprising two beta sheets packed against a single helix. The enzyme is present in the cytosol.	1.33245e-53
NZ_CP039434.1\|WP_033625042.1\|1722999_1724145_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	3.47929e-179
NZ_CP039434.1\|WP_016618437.1\|1719820_1721059_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.03489e-174
NZ_CP039434.1\|WP_085443342.1\|1708038_1709805_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP039434.1\|WP_002360016.1\|1705951_1706857_-\|prenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	8.82053e-105
NZ_CP039434.1\|WP_002364369.1\|1709801_1711535_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|274323	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD.	0

>NZ_CP039434.1|WP_011109517.1|1714127_1714226_-|hypothetical-protein
MIEEREEILVAPKKIVRNASVLFGFCLRKLYT
>NZ_CP039434.1|WP_010707351.1|1712549_1713968_-|cytochrome-ubiquinol-oxidase-subunit-I
MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFLLSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDKMNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWYEFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQMKALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWADEREHKQVFGIDIPYMLSILSYNKLSGSVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPSLYEKKWMLWVVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITSNVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE
>NZ_CP039434.1|WP_002356976.1|1711539_1712553_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVWLLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTLSIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNYIALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLTVIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLKIMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY
>NZ_CP039434.1|WP_002364369.1|1709801_1711535_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSGGHLNQQLQSILLFFIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEGISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQSKADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILSTFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDGKNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGRKKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPYIFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIHTLIGESGRMLSGGQAQRVALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDYILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ
>NZ_CP039434.1|WP_085443342.1|1708038_1709805_-|thiol-reductant-ABC-exporter-subunit-CydC
MMEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLPENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTKYRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVVVFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGSEFVARYETDEANVRALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLIDAFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEVPVQPNGTSLSIEHLSFAYENQEKKVLNDLSLTIPEKQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYIGVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVAQLPEGLQTMVDEAGLRFSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQGVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE
>NZ_CP039434.1|WP_002360015.1|1706978_1707959_+|polyprenyl-synthetase-family-protein
MNTFWKSFPDVERSLTETCELIEQTLHTRNEDIEEALVTLARSGGKLLRPAFFFLFAQLGDEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGAVTIQSQYGKDVAVYTGDLLFTEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELFSLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGVYTLPLLFAYQAAPDVFSPYLDKGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAITDIQQLPDGTAKETLLSLTELLLHRSF
>NZ_CP039434.1|WP_002360016.1|1705951_1706857_-|prenyltransferase
MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDNYNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMGLYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFLVALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAVGLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWWL
>NZ_CP039434.1|WP_002401320.1|1704711_1705923_-|NAD(P)/FAD-dependent-oxidoreductase
MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKITYNIMDVVDEKMTTFIQGTVKTIDAATQTVALEDGQAINYDYLVVSLGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFAEIAGVSTDQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALGIVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH
>NZ_CP039434.1|WP_048955485.1|1704503_1704635_-|hypothetical-protein
MLFNFWRISAYFRRSWFCSRRLSVFERGVKIQSDFCPTLIFLK
>NZ_CP039434.1|WP_070415770.1|1701974_1704398_-|DNA-translocase-FtsK
MAQKRATNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLRLVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLFFHAFMFRNVSGSQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGIFLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQQKLQERERMEQAAAERLTKTPVETHQPMVEEPAAPTPVQIDSFQQQNQAMPVPPIAATKPHREQEEKAADEAGVLEFEISEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQTFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPGKSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAGSTGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMMVASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRTIIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMPTDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVIGPSEGSKPRKVFLQAESEEAVPETPEQ
>NZ_CP039434.1|WP_071646747.1|1714963_1715827_-|AraC-family-transcriptional-regulator
MLANLNQAMDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFIAGMSLAEYIKKRRLAEANLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWSGQAPSEVMKTQIQKTFPKFSFYIDIKGGQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELAQRITPQQRAEMHTFDDIYPHQVVNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFSNEGPFPQTLQETWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK
>NZ_CP039434.1|WP_002388224.1|1715911_1717993_-|DNA-topoisomerase-III
MVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLLGLKMPEDLNKEWQTWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDAGREGELVARWILEYVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKADWLVGLNVTRALTVKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLTVESEKAKMTQKNPYALKERQEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQFSAKKTLSLVQSLYETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGAVVKQQKVFQNAKVTDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTKVTVAFGKETFVFHQNKVVVAGWKTTAEQPLSTVQWQKGMTVAPNFTINKELTSPPKPLTEGTLLGKMEKHSLGTPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPELTEKWEKSLEAIASGQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNLREKNTKDGKIYVCTNQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITEKIPDKKERKQKMTKHEERRLMKKYSQPDEPEESALAQALKAAMNQE
>NZ_CP039434.1|WP_002356966.1|1718123_1718489_-|DUF1033-family-protein
MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNYLTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKVI
>NZ_CP039434.1|WP_002411399.1|1718586_1719156_-|TetR/AcrR-family-transcriptional-regulator
MAKKRNLTKAKILESARNLAEELGVHQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVDLLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLISVPKTQNQQLIEGIHETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIEDFIASLEVAG
>NZ_CP039434.1|WP_002362073.1|1719288_1719804_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGFPFIHWLAANVPVTNEIPEDFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYLGLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQRLAKAKFEFLY
>NZ_CP039434.1|WP_016618437.1|1719820_1721059_+|multidrug-efflux-MFS-transporter
MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGNFTHQQLNFWSGITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLLQGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFFITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNNSISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLILAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLINLLWVRRSTAELKKEKNDD
>NZ_CP039434.1|WP_137685778.1|1721282_1722362_-|tRNA-2-thiouridine(34)-synthase-MnmA
MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGAA
>NZ_CP039434.1|WP_002356959.1|1722587_1722932_-|DUF1831-domain-containing-protein
MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKITITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE
>NZ_CP039434.1|WP_033625042.1|1722999_1724145_-|cysteine-desulfurase
MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQAKPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYLPVNENGQISMEQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQAYGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENLAGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLHLKGIPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGNTPEEIATFSEVLVAVIQQLKK
>NZ_CP039434.1|WP_002362076.1|1724301_1725276_-|ribose-phosphate-diphosphokinase
MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVYIIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVANMLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSGVQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEVLMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTADRQPATLNIISCAELMGEALLRIHENKPMSPLFRLEPKGE

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Crispr_ID: NZ_CP039434_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039434_2

1909326-1909446

Orphan

Consensus_repeat	Method
AGAGGAGACAACGTTCCCTTTGGTCACCTTGTGCTGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP039434_2

>merge|NZ_CP039434|2|1909326-1909446|CRISPRCasFinder
AGAGGAGACAACGTTCCCTTTGGTCACCTTGTGCTGTTCATCATCTACTCCATGTTTTTGGCTAAGCAGTTTGTTTTAACATAGAGGAGACAACGTTCCCTTTGGTCACCTTGTACTGTTC

>NZ_CP039434|2|2|1909326-1909446|CRISPRCasFinder
AGAGGAGACAACGTTCCCTTTGGTCACCTTGTGCTGTTC	ATCATCTACTCCATGTTTTTGGCTAAGCAGTTTGTTTTAACAT
AGAGGAGACAACGTTCCCTTTGGTCACCTTGTACTGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039434.1\|WP_002356744.1\|1912413_1914612_-\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|224397
NZ_CP039434.1\|WP_002356736.1\|1916614_1917049_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|133478
NZ_CP039434.1\|WP_002379669.1\|1908246_1909155_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP039434.1\|WP_010709745.1\|1918053_1918917_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP039434.1\|WP_002356741.1\|1915797_1916247_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP039434.1\|WP_002356760.1\|1901225_1902107_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP039434.1\|WP_002359745.1\|1910634_1911537_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP039434.1\|WP_002356735.1\|1917180_1918011_+\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080
NZ_CP039434.1\|WP_002356755.1\|1904963_1905896_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|235040
NZ_CP039434.1\|WP_002356759.1\|1902212_1902998_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP039434.1\|WP_080114605.1\|1904780_1904918_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|366279
NZ_CP039434.1\|WP_002356745.1\|1911934_1912414_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP039434.1\|WP_002356740.1\|1916272_1916449_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP039434.1\|WP_085442972.1\|1906160_1908245_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP039434.1\|WP_010712668.1\|1903181_1903619_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NZ_CP039434.1\|WP_002356757.1\|1903638_1904415_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP039434.1\|WP_113821031.1\|1905929_1906121_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181104
NZ_CP039434.1\|WP_002374343.1\|1909757_1910552_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
NZ_CP039434.1\|WP_010706543.1\|1904521_1904797_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|224174
NZ_CP039434.1\|WP_002389231.1\|1914640_1915615_-\|phosphate-starvation-inducible-protein-PhoH	unknown	unknown	gnl\|CDD\|224616

Protein	Function_ID	Function_description	E-value
NZ_CP039434.1\|WP_002356744.1\|1912413_1914612_-\|HDIG-domain-containing-protein	gnl\|CDD\|224397	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only].	6.87785e-159
NZ_CP039434.1\|WP_002356736.1\|1916614_1917049_-\|transcriptional-repressor	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	8.2692e-35
NZ_CP039434.1\|WP_002379669.1\|1908246_1909155_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP039434.1\|WP_010709745.1\|1918053_1918917_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	2.65031e-121
NZ_CP039434.1\|WP_002356741.1\|1915797_1916247_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	1.89434e-63
NZ_CP039434.1\|WP_002356760.1\|1901225_1902107_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.02636e-146
NZ_CP039434.1\|WP_002359745.1\|1910634_1911537_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	0
NZ_CP039434.1\|WP_002356735.1\|1917180_1918011_+\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	3.91447e-139
NZ_CP039434.1\|WP_002356755.1\|1904963_1905896_+\|membrane-protein-insertase-YidC	gnl\|CDD\|235040	PRK02463, PRK02463, OxaA-like protein precursor; Provisional.	1.42463e-134
NZ_CP039434.1\|WP_002356759.1\|1902212_1902998_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	3.78425e-167
NZ_CP039434.1\|WP_080114605.1\|1904780_1904918_-\|DNA-binding-protein	gnl\|CDD\|366279	pfam00747, Viral_DNA_bp, ssDNA binding protein. This protein is found in herpesviruses and is needed for replication.	0.00437066
NZ_CP039434.1\|WP_002356745.1\|1911934_1912414_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	4.17563e-61
NZ_CP039434.1\|WP_002356740.1\|1916272_1916449_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	8.30263e-11
NZ_CP039434.1\|WP_085442972.1\|1906160_1908245_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP039434.1\|WP_010712668.1\|1903181_1903619_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	1.11182e-31
NZ_CP039434.1\|WP_002356757.1\|1903638_1904415_-\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	9.03482e-72
NZ_CP039434.1\|WP_113821031.1\|1905929_1906121_-\|hypothetical-protein	gnl\|CDD\|181104	PRK07758, PRK07758, hypothetical protein; Provisional.	1.61118e-05
NZ_CP039434.1\|WP_002374343.1\|1909757_1910552_-\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.33825e-71
NZ_CP039434.1\|WP_010706543.1\|1904521_1904797_+\|acylphosphatase	gnl\|CDD\|224174	COG1254, AcyP, Acylphosphatases [Energy production and conversion].	2.30474e-26
NZ_CP039434.1\|WP_002389231.1\|1914640_1915615_-\|phosphate-starvation-inducible-protein-PhoH	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	4.35931e-144

>NZ_CP039434.1|WP_002379669.1|1908246_1909155_-|glycine--tRNA-ligase-subunit-alpha
MKNKLTVQEMILTLQKFWSSNGCMLMQAYDTEKGAGTMSPYTFLRAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPENIQELYLESLKLLGIDPLEHDIRFVEDNWENPSMGCAGLGWEVWLDGMEITQFTYFQQVGGLQCHPVTSEITYGLERLASYIQEVESVYDLEWTQGVKYGEIFVQPEYEHSKYSFEISNQEMLLENFDKFEKEAKRCIEESLVHPAYDYILKCSHTFNLLDARGAVSVTERAGYLARIRNMARSVAKIFVAEREKLGFPLLNKDQSVSKEAE
>NZ_CP039434.1|WP_085442972.1|1906160_1908245_-|glycine--tRNA-ligase-subunit-beta
MAKDLLLEIGLEEMPAHVVTPSRIQLEEKVIKFLDEHHLDYETVQSFATPRRLAVKVTAIPEKQADVEEEVKGPAKKIALDAEGNWSKAAQGFVRGQGVTTEDIVFKELNGVEYVYVTKFTKGQSAKEVLTKLNDVITSLTFPVTMHWANYDFEYIRPIHWIVALLDDEVIPFKVLDVTTGQTSRGHRFLGDDVTFQHANEYETKLKEQFVVVQPNERKQMIVDQANALAAEKNWQLALDEELLEEVTNLVEYPTAFVGSFDEKYLSVPDEVLVTSMKEHQRYFEVRNDQGLLMPHFIAVRNGDNVHLENVIKGNEKVLIARLEDAEFFYNEDKKLTIEACVEKLKNVTFHEKIGSIYEKMQRVALIAQIIGRKVGLSEEELEDLKRASEIYKFDLVTNMVGEFPELQGIMGEKYALLQGEKTAVATAIREHYLPTSSEGELPETAIGAVLALADKLDSVFSFFSVGMIPTGSNDPYALRRQTYGVIRIIEDKGWTFPLVQLQTEVDAAVNQDVEKYGVLLNEGQAEVVEFVKARLRQLLMTKNVRHDIIDAVVSAEQADLSKLFASANILKSHFEDQDFKPSMEALTRVINLAKKGQELLGDTEEGIDPSLFENKAEKELYQAVNDLSEAFATRTIAENYEALVNLRPLIDAYFNETMVMVEDEKVKQNRLKQLMQIAKMALSIASLDLLIVK
>NZ_CP039434.1|WP_113821031.1|1905929_1906121_-|hypothetical-protein
MSETTFEQILTQLSKPAVRALTNEKINSVDELYARGRKALLSLHGFGPKSIRTIEEMTGKELK
>NZ_CP039434.1|WP_002356755.1|1904963_1905896_+|membrane-protein-insertase-YidC
MRKLNRWLYGSGLLFLVMFLSGCVKTGADGQPTGEGFVYNFLVLPMSNAITYLVDNFNWNYGWAIIFITIIVRIIILPLGLHQSKKSFIQTEKMQAIKPQVDVAQAKMKQASTREEQMAAQAELQKIYKENNVSMVGGIGCLPLLIQMPIFSSLFFAARYTKGIATASFLGMNLGQPNMILVALAGLAYLAQGYISMIGIPEEQKKTMKSMLIVSPLMIVFMSFSSPAGVALYWVVGGIFTCIQSAITNILLRPRIKKQVQEELKNNPPKQVVTPIKDVTPKETNKVTQKTNQPKANGNKGRNAGKQKRK
>NZ_CP039434.1|WP_080114605.1|1904780_1904918_-|DNA-binding-protein
MKQRSFSIKIEKKLLQKSIKIRNYLLFKASSQRNQSLESKFIESL
>NZ_CP039434.1|WP_010706543.1|1904521_1904797_+|acylphosphatase
MEKLRMNVQGRVQGVGFRYMTKMVADQLGVTGSVRNEDDGSVSITAIAPEDIMETFIKKIKDSPSPAGRVTYVDIQEDPLLEETEQFKVIQ
>NZ_CP039434.1|WP_002356757.1|1903638_1904415_-|RNA-methyltransferase
MKEITSTKNNQLKEWKKLHKKKYREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETEKLIFVSDEVLNSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENNQ
>NZ_CP039434.1|WP_010712668.1|1903181_1903619_-|GNAT-family-N-acetyltransferase
MLTIKKTTQLTEKELETIMAIWLQTNLEAHPFVAPTYWQENKAFVRAALPKATLILAEEEGQIIGFLGLMDNYIAGIFIKKAFQGKGIGQKLLQVAKEEQDILSLAVYRENQAAYAFYQKQGFVQQKRTIDETGNEECHLVWQAQ
>NZ_CP039434.1|WP_002356759.1|1902212_1902998_-|30S-ribosomal-protein-S2
MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKLVDAAYDYMKNVAEEGGVALFVGTKKQAQEAIKDEAIRAGQYYVNHRWLGGTLTNWDTIQKRIARLKKINAMEEDGTFEVLPKKEVAGLNKERERLEKFLGGIADMPRIPDVMYIVDPRKERIAVQEAHKLNIPIVAMVDTNCDPDEIDVVIPSNDDAIRAVKLITAKMADAFIEGNQGEDQATEELFVEETPEATSIEEIVDVVEGNNESAE
>NZ_CP039434.1|WP_002356760.1|1901225_1902107_-|elongation-factor-Ts
MADVTAKMVKELRDMTGVGMMDAKKALVKVEGDMEKAVDFLRENGMAKAAKKNDRIAAEGLANVATVGNVAAIVEVNSETDFVSKNEMFQDLVKDIATKVAENKPATMEEAMAIKTEKGTIESDLIEATTVIGEKISFRRFEVVEKADNAAFGAYLHMGGRIAVLTVIDGTTDEEVAKDVAMHIAAINPRYVNESQIPQEELEHEKAVLTEQALNEGKPANIVEKMVVGRLQKFKAEIALVDQPFVKDPDMTVEKFVASKGGEVKSFVRFEVGEGIEKREDNFADEVMSQMKN
>NZ_CP039434.1|WP_002374343.1|1909757_1910552_-|DNA-repair-protein-RecO
MALGETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYIGNFREEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMALSALNEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWHLDEQRYHADPRAIHFIRLFSQVSYEKVQNIQVKEETKKSIRETIDMLYDEYVGLHLKSKKFIDQMKTWENTLKIPPRKKEEKET
>NZ_CP039434.1|WP_002359745.1|1910634_1911537_-|GTPase-Era
MTTEHKSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKIDKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITDHPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQKGIIIGKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDWRDKKIYLQDFGYRKEEY
>NZ_CP039434.1|WP_002356745.1|1911934_1912414_-|rRNA-maturation-RNase-YbeY
MDITFIDETEKVPTEEIKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLKR
>NZ_CP039434.1|WP_002356744.1|1912413_1914612_-|HDIG-domain-containing-protein
MKKVLTKLGDRLGKAYLPILLAVFSLLLFMIMFGSVHQKRVEIKEGQLAEKTIRANKNIENTYETEQRKKLAAEAVTPEYIYQEDTASVQHNRIDKLFKLIDSANEKVDKEYSNKQAKAKKEETIPAPTVEERVASLKSLFESLPQDEVTFYQSFPNVFYQTIFTLTSEQLDKVRSESLMLVDDAMQNHVRESDLDKIRQEANGKIQYLDITSTMQQVIRYIVNQGIVVNDIANEKRTEELRQKAMNAVQPAMIYQGEIIVREGTQIDAKAVEKLELLGMTSQNTSIFPMVALALAILLQVEVLIFFTKQVTEPSRQRSFIIFYTGAMLISVILMKFFQIFQTEQLMYIPLFYPAAFAPLILNHFVNRRSGIIAAIFQVVFALFIFYNSIGTNSLTVILIMYLFSGFLATVVKRKRMSEQVFPALMWVVVFPVFMAVVLMIYQGMSLTDGKTWTALICASAGTVLSFLATMGLHPYIELLVTDDSMIVLNELSNPNHPLLKQLLEEAPGTYHHSMMVASLSANAVAEIGGRSLLTRVACYYHDIGKIKHANFFVENLPAGAENPHNFLLPEDSKQIIFGHVIDGAKILEEYNMPQMVIDICRQHHGTTLMKFFYVKAKERNPEIKESDFRYPGPRPQTREAGIVSIADTCEAAVRAMDHPTNEKIQAFVHNVIQDRISDGQLDECGLTMKEIRIIEKSLINGLCSTFHSRIKYPKMKAEAEEMKDEQEKRDD
>NZ_CP039434.1|WP_002389231.1|1914640_1915615_-|phosphate-starvation-inducible-protein-PhoH
MTDNQSKSLELILTDSDDAHMLLGTHDKHIKFLEENTHVTINSRGEVIQLIGESSEVELVASVLRALQTLIQRGIKVHTPDVVSALKMAKAGNLEAFIAMYEEEIMKDHHGRAIRIKNVGQKKYIDAVKTHDVIFGVGPAGTGKTFLAVVMAVAALKKGEVQKIILTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYQIFGMDHTNRLMERGVIEIAPLAYMRGRTLDDAFVILDEAQNTTVAQMKMFLTRLGFSSKMIVNGDTSQIDLPRGVTSGLVNAERTLKDIEKIAFVNFEASDVVRHPVVAQIIQAYEKEQQKHS
>NZ_CP039434.1|WP_002356741.1|1915797_1916247_-|GatB/YqeY-domain-containing-protein
MSLLTTLNDDIKTAMKAKDKETLAVLRMLKTAIQNDQIKAGRELNGEEELTVLSREMKQRKDSLSEFEKAGRDDLVEKVKVEIAIVEKYMPQQLTEEEIRQLVQEVMTQTGATSPKDFGKVMGAMMPKVKGKADGNQVNAIVKELLQEN
>NZ_CP039434.1|WP_002356740.1|1916272_1916449_-|30S-ribosomal-protein-S21
MSKTVVRKNESLDDALRRFKRSVSKAGTLQESRKREFYEKPSVKRKKKSEAARKRKKF
>NZ_CP039434.1|WP_002356736.1|1916614_1917049_-|transcriptional-repressor
MAPVKTNIEQALETMKASGLKYTKKRELLMSYLIKRNRYVSAREVYEFMNETFKGVSYDTVYRNLHDFERLELLEKTELNGEQKFRFRCCQEVEHHHHFICTVCGKTEEIHMCPMNFFEEQLKGCSIEGHRFEILGRCADCCEK
>NZ_CP039434.1|WP_002356735.1|1917180_1918011_+|kinase/pyrophosphorylase
MTIFVISDSAGETASKLAAASMAQYPTVDFTLIRRTFVKDEDKLVQALEDAKKAEAMVLHTIINDHLVAIANQFFNEHQLFHFDILTPPVAEIERLTGVAPMREPGALHHLNENYFKRIEAMEFAVKYDDGKDPRGFLEADVLLLGVSRTSKTPLSLFLANKNLKVANLPLIPEAHLPKQLFEMDPKKIVGLTNDPNVLNGIRKERMRAYGLPENTSYSDIEKIRRELAFANDLYQKLGCIVIDVASLSIEETASMILNALNLEDHSYYSTETSED
>NZ_CP039434.1|WP_010709745.1|1918053_1918917_-|homoserine-kinase
MKIRVPATSANLGPGFDSCGIALSAYLTINVLGESEFWEIQHTLGEEIPTNEENLLIQTALKIAPELTPKVIRMVSDIPLARGLGSSSSVIVAGIELANRLAHLNLSPKEKVRLATEMEGHPDNVAPAILGDFVVASHVENQVYHVKHHFPMCDVIAFIPEEPLFTEKSRAVLPEKLAYKEAVAASSIANVMIAAILNGDLPLAGKMMEQDKWHETYRRSLVPHLKEIRRLTQQRGAYGSFLSGAGPTVLILSPEERTNEIVQSLEKLSTKASIQIFNIDQEGVQVF

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Crispr_ID: NZ_CP039434_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039434_3

2529436-2529509

Orphan

Consensus_repeat	Method
ATAGTTGGCGAGCAACAGAAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP039434_3

>merge|NZ_CP039434|3|2529436-2529509|CRISPRCasFinder
ATAGTTGGCGAGCAACAGAAAAACTCGATATAGAATTGGACGTAGAGCCAATAGTTGGTGAGCAACAGAAAAAC

>NZ_CP039434|3|3|2529436-2529509|CRISPRCasFinder
ATAGTTGGCGAGCAACAGAAAAAC	TCGATATAGAATTGGACGTAGAGCCA
ATAGTTGGTGAGCAACAGAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039434.1\|WP_010706991.1\|2522877_2523564_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372694
NZ_CP039434.1\|WP_010706993.1\|2518579_2519446_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NZ_CP039434.1\|WP_010776188.1\|2535241_2537818_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP039434.1\|WP_002354871.1\|2531929_2532367_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP039434.1\|WP_002359021.1\|2518242_2518455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039434.1\|WP_002354866.1\|2537818_2538190_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226923
NZ_CP039434.1\|WP_010824020.1\|2519613_2520918_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP039434.1\|WP_002354869.1\|2532498_2533053_-\|septum-formation-protein-Maf	unknown	unknown	gnl\|CDD\|238310
NZ_CP039434.1\|WP_002381060.1\|2530783_2531755_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP039434.1\|WP_002392696.1\|2530408_2530552_-\|putative-holin-like-toxin	unknown	unknown	gnl\|CDD\|319017
NZ_CP039434.1\|WP_002354883.1\|2522387_2522837_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605
NZ_CP039434.1\|WP_002354863.1\|2539235_2540792_-\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NZ_CP039434.1\|WP_002398177.1\|2520910_2522179_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP039434.1\|WP_137685824.1\|2528463_2529114_+\|beta-phosphoglucomutase	unknown	unknown	gnl\|CDD\|213672
NZ_CP039434.1\|WP_137685844.1\|2529725_2530169_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376232
NZ_CP039434.1\|WP_010713705.1\|2533077_2535210_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|223400
NZ_CP039434.1\|WP_010824023.1\|2523651_2524350_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372694
NZ_CP039434.1\|WP_002354864.1\|2538278_2539076_-\|TIGR00282-family-metallophosphoesterase	unknown	unknown	gnl\|CDD\|379099
NZ_CP039434.1\|WP_137685823.1\|2525704_2528449_+\|glycoside-hydrolase-family-65-protein	unknown	unknown	gnl\|CDD\|224471
NZ_CP039434.1\|WP_002354877.1\|2524729_2525443_-\|trehalose-operon-repressor	unknown	unknown	gnl\|CDD\|274116

Protein	Function_ID	Function_description	E-value
NZ_CP039434.1\|WP_010706991.1\|2522877_2523564_-\|hypothetical-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	3.1271e-10
NZ_CP039434.1\|WP_010706993.1\|2518579_2519446_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	7.29166e-36
NZ_CP039434.1\|WP_010776188.1\|2535241_2537818_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP039434.1\|WP_002354871.1\|2531929_2532367_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.48715e-93
NZ_CP039434.1\|WP_002354866.1\|2537818_2538190_-\|hypothetical-protein	gnl\|CDD\|226923	COG4550, COG4550, Predicted membrane protein [Function unknown].	8.72333e-15
NZ_CP039434.1\|WP_010824020.1\|2519613_2520918_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	9.92633e-85
NZ_CP039434.1\|WP_002354869.1\|2532498_2533053_-\|septum-formation-protein-Maf	gnl\|CDD\|238310	cd00555, Maf, Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.	1.6551e-85
NZ_CP039434.1\|WP_002381060.1\|2530783_2531755_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP039434.1\|WP_002392696.1\|2530408_2530552_-\|putative-holin-like-toxin	gnl\|CDD\|319017	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox). Hol_Tox is a family of small proteins (34-48aas) with a single TM region. Members can exhibit antibacterial activity against Gram-positive bacteria but not against Gram-negative bacteria.	3.57939e-12
NZ_CP039434.1\|WP_002354883.1\|2522387_2522837_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	2.8499e-49
NZ_CP039434.1\|WP_002354863.1\|2539235_2540792_-\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NZ_CP039434.1\|WP_002398177.1\|2520910_2522179_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.75552e-51
NZ_CP039434.1\|WP_137685824.1\|2528463_2529114_+\|beta-phosphoglucomutase	gnl\|CDD\|213672	TIGR01990, bPGM, beta-phosphoglucomutase. This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	5.39161e-106
NZ_CP039434.1\|WP_137685844.1\|2529725_2530169_+\|hypothetical-protein	gnl\|CDD\|376232	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.	1.70999e-14
NZ_CP039434.1\|WP_010713705.1\|2533077_2535210_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|223400	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair].	0
NZ_CP039434.1\|WP_010824023.1\|2523651_2524350_-\|hypothetical-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	1.26959e-09
NZ_CP039434.1\|WP_002354864.1\|2538278_2539076_-\|TIGR00282-family-metallophosphoesterase	gnl\|CDD\|379099	pfam13277, YmdB, YmdB-like protein. This family of putative phosphoesterases contains the B. subtilis protein YmdB.	2.68643e-155
NZ_CP039434.1\|WP_137685823.1\|2525704_2528449_+\|glycoside-hydrolase-family-65-protein	gnl\|CDD\|224471	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism].	9.52933e-173
NZ_CP039434.1\|WP_002354877.1\|2524729_2525443_-\|trehalose-operon-repressor	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	6.92052e-137

>NZ_CP039434.1|WP_137685824.1|2528463_2529114_+|beta-phosphoglucomutase
MTIGFIFDLDGVITDTAKFHYQAWKALADSLGISIDETFNETLKGISRMDSLDRILAHGHRENAFTPAEKEALAQQKNDHYVQLLEHLTTEDVLPGVVPLLQQAQARHIPCAVASASKNAPLILEKLGVRAYFATIVDPDSLSKGKPDPEIFLAAADSIGVLPQNAIGFEDAQSGIDGLKAAGIYAVGLSANHPLIGADMQVSEMTELSVDALLNR
>NZ_CP039434.1|WP_137685823.1|2525704_2528449_+|glycoside-hydrolase-family-65-protein
MSIQVYKEAPNMTILELTFATNQLTTTFFNHKLEPLHQKTFPFEALTIEETVPELCQLILAEAAPILGGIVADFPADFFSPEETLALVPQAVIQAFAEQLNTPLLTAAEQAAAPNLLAAFEEKRQYLAWHLDYYGYVPGKNEYAVESLLTVGNGFLGLRGTTPEMTISDDHYPATYIAGLYNTAASEVAGQVVENEDFVNAPDNQHIALKIGDATDWLTISPDTLQQVHRQLNLKTGLFVAEMILKDAHNQQIKLTTKKIANMAQPNDYHLQYTFEPLNFSAPITLKTVTDGSVYNYNVARYRNLTAKHFQVTALSAQENKTVIEVCTNQSNLSVRETALITGDFFEKEAIMIQEEAEKIAQVVTVMAHQGTRYTLEKQVYVQASHAEQSWQVPFTPKDSFAAAAQESARAWQTLWQQANITVTGDLMSQKLLRIHSYHLLASASPFSNQAQALDVSITARGLHGEAYRGHIFWDEIFILPFYIQHYPDTAKQLLLYRYHRLEKAKENAAASQYRGAMYPWQSGRDGRETTQKLHLNPLNGHWGEDHSILQRHVSLAIAYNAWLYWHSTQDHEFMKQYGGEMLLEIAQFWNSAATLDDATGRFFIDKVMGPDEFHEGYPDQTESGLKNNAYTNLMVVWLFEELTNILALFSEEEQAQLFAKTQTTSADLARMQQIQNSLEIEVNSDGIIAQYEGYFGLKEIDWAAMKEKYGNIYRMDRILKAEGESPDDYKVAKQADTLMLFYNLDKTRVDQILEDLGYQLPADYLEKNLLYYLKRTSHGSTLSRIVHAQLAEMAQFHELSWQLYQEALYSDYRDIQGGTTSEGIHTGVMAATIHVTLATYAGVDTRQNELSICPNLPEHWQSLAFQFIHQGVTYQFSLTQTSVTITADKDTQLLVQGALIPLTAERPKEVHYQ
>NZ_CP039434.1|WP_002354877.1|2524729_2525443_-|trehalose-operon-repressor
MNKFHDIFLELEQQIVQGDYQPGDLLPSENQLVETYNVSRETIRKALNLLINAGYIQKKQGKGSIVLNFKKFNFPISGVTSYKELQQTQHIESHTHVVSLEEIPVERNLAQLTGWTEGAPVWRLVRQREIEGEVDILDIDYLIKEIVPELPKHRAEDSIFDYLENDLGLAISYAQKEITVEPLTEMDKQLIGEVEGNHVVVVRSIMNLEDTRCFGYTESRHRLNKFKFVEFARRRKL
>NZ_CP039434.1|WP_010824023.1|2523651_2524350_-|hypothetical-protein
MKKKLFASLLVGSAVVGASLAPLSAQAVTTGNTPVQVEFEGGTLQDQGDDTGPIVDPDPTQPNTNFDLLAIPKIFDFSPVKIGEDITAIRPISTAPKSIMVGDVRGTKEGWHVTGEVVGMSNGTDTLDGQITFGMTPYYAIFNESTSSYGGFNTLNGMNIANDPTAPSFNGASLKIGGGAAALINAPLGKGQGTWSGRLDNLTLNVTTPMQELKKGAYTGNVTWNLVAGPAI
>NZ_CP039434.1|WP_010706991.1|2522877_2523564_-|hypothetical-protein
MKKKLLASLLVSSAVVGASLAPLSAQAVTTGNTPVQVEFGGGKLPDGEGDSGKDPDPDTSNTDFDLLYIPHKFFFPKTAISADTDLSALSTAIIARYGVGDLRGTKDGWHVTATIPEMANGEEKLTGTFSFTQSGYIVTYDEERNSFKPDLGSDFNSNPAAPEFLAARSITIGGGATLVGNAVSGKGQGMWGVTLTNKYLNITTPYQQLKAGTYTGDVTWNLVAGPSI
>NZ_CP039434.1|WP_002354883.1|2522387_2522837_+|large-conductance-mechanosensitive-channel-protein-MscL
MIKEFKEFIMRGSVLDLAVGVVIGSAFTAIVTQVVEGLITPLISLIFVLTTGKKSADDALGALVYKVEGVEFNIGSVISALITFLITAFVLFLIVKAANKMKNRGKKEEAAEEEVVPTSEDYLKEIRDLLAAQTPPAETVKTDSTFTEK
>NZ_CP039434.1|WP_002398177.1|2520910_2522179_-|insulinase-family-protein
MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKISELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQAIFFLEGETEND
>NZ_CP039434.1|WP_010824020.1|2519613_2520918_-|insulinase-family-protein
MIKKDYAQIKETLYTETLENGLKVYLLPKNDFQKTYGLFTTDYGSIDNTFVPIGQEEMIEVPDGIAHFLEHKMFEKEDGDVFQKFGQQGASANAFTSFTKTSYLFSTTDQVTQNLETLLDFVQSPYFTKETVEKEKGIIGQEIQMYLDDPNWRLFFGILGNLYPKHPLHIDIAGTVASIAEITAEDLYTCYNTFYHPSNMTLFVVGKMDPEALMAFIRENQAAKEFPAAQPIRRHFPEETAADIVKESAIEMAVTRAKVLVGLKGLDEVPTTGRDLMKYQITVNLLLQLLFGNTSQNYLALYDEGLLDDSFSYDFNLDRSFHFADIGGDSEQPEVLAERIEAILLSATTSPELTEENLSLLKKKMIGKYFQSLNSLEYIANQFSQSLFGETTLFDKIEVIESIQLADVRQVAETFIREEGLSRFYMYPKGETEQ
>NZ_CP039434.1|WP_010706993.1|2518579_2519446_-|helix-turn-helix-domain-containing-protein
MASVNIGETLKEARLQKNITIDELQQMTKIQKRYLEIIEQNDFESLPGTFYVRAFIRQYASAVGLDGNQLVDIYDGKEPEIVEEPKPVYEELEGSRKQLHDEEKQSSWLLRNLPAIAFSLIGLAIAVVVLYIMWQDQKAEPIIQTPATSASVEKTKESSQAPESSTQSSTPPSSSSEPEKKTAVAVVSDANNQVTATVKDANSPINITFKGTEGSCWIGVMVDGNYTYQHTLQAGETQTTALPANAANATLILGASNNVAIQVDGADLTLEKTPVLIRKDVTLGITYR
>NZ_CP039434.1|WP_002359021.1|2518242_2518455_-|hypothetical-protein
MLKIVNKKFNLITIFSIALLVMGFLIVGLQLYFYFIYGSKFLDSITLIGMINLGLGYYQLFLKKGKNISE
>NZ_CP039434.1|WP_137685844.1|2529725_2530169_+|hypothetical-protein
MHLCGVDYYQIDKQGSCKFRFKATQFYRALKNNKVSLRGIKPKDDGTIGQKLQVISLLEMLISPGVRICDGGKFYNLQYEKAIRSGKMIVALTCKENNKKYVPQSLLSLINQPRKSQSKSLTESHEVIKISKSELNSTSVIEVYDKF
>NZ_CP039434.1|WP_002392696.1|2530408_2530552_-|putative-holin-like-toxin
MSVLPKFTERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDNKK
>NZ_CP039434.1|WP_002381060.1|2530783_2531755_-|ribose-phosphate-diphosphokinase
MSKHYFDPRLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVYVIQSTSSPVNDNLMELLIMIDALKRASAKTINVVMPYYGYARQDRKARAREPITAKLVANMIEKAGATRMLTLDLHAVQIQGFFDIPVDHLMGAPLIADYFIEHGIQGDDVVVVSPDHGGVTRARKLAEFLKAPIAIIDKRRPKANVAEVMNIIGHVEGKTCVLIDDMIDTAGTISLAANALKEAGAKDVYASCTHPVLSGPALQRIEDSAIERLVVTDSIYLSDDRKIAKIDEVSVGELIGDAIKRIHENKPVSPLFETKNK
>NZ_CP039434.1|WP_002354871.1|2531929_2532367_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MTKPTEEELKQTLTDLQYAVTQENATERPFSGEYDDFYQDGIYVDIVSGEPLFSSLDKYDAGCGWPSFTKPIEKRGVKEKADFSHGMHRVEVRSQEADSHLGHVFTDGPLQEGGLRYCINAAALRFVPVADLEKEGYGEYLSLFK
>NZ_CP039434.1|WP_002354869.1|2532498_2533053_-|septum-formation-protein-Maf
MQIILASQSPRRQELLKRVVPTFTIAPADIDETVGKDGLPAEYVAQMAAQKAAAIAEQSPEALVIGCDTIVALAGEILGKPTSREDGYRMLRLLSGKTHDVYTSVTLKQGEKERSATVHSTVTFYPLTDTEIHAYLDTAEYADKAGAYGIQGQGALLIEAIAGDYYAIMGLPIAKVARLLKEFN
>NZ_CP039434.1|WP_010713705.1|2533077_2535210_-|DNA-mismatch-repair-endonuclease-MutL
MGKIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGEGIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGSYVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSHPKVAFRLVHDGHKMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSLPEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNVHPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLRFKKKLPPEPKAEQMEIPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPETVNQTERAVDPMDDPFAPPVPESTSVAEETSAYETSSAAADSANHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPEFDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFIVRAHPTWYPAGEEESIVREMIDMLLTTGSVSVKKFREATAIMMSCKRSIKANHYLNEQQARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKRIQDPH
>NZ_CP039434.1|WP_010776188.1|2535241_2537818_-|DNA-mismatch-repair-protein-MutS
MPQKTKNTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMCGVPYHAAQGYIDTLIEQGYKVAICEQVEDPKTTKGMVKREVVQLVTPGTVMNSKGLEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLGSGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTNELINPLEIEITGKLLSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETKTAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVAFGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDLNPVEDLVALIATAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYNRVFGYFIEITKSNLANLEEGKYERKQTLANAERFITPELKELERLILEAEEKSVELEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIVEGRHPVVEKVLGHQEYIPNSIRMNPETDILLITGPNMSGKSTYMRQLALTVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSSLLERAATILSALEAEETTIPSSVHHEEVSEVHEETEQLSLFKEVSTEELSVIDTLKKMNLLEMTPLDALNMLHQLQKRI
>NZ_CP039434.1|WP_002354866.1|2537818_2538190_-|hypothetical-protein
MEPLNLDAQSNKELEKLLHLIGQDEVIQRYQAIEEKVKKNKKLTELVEEIKAAQKDAVQFAHYGKPTAEKEAIQRADAKTKEFDEHPLVVAYREQLIEANDLVQHVTALIQYRVNEELEKEGN
>NZ_CP039434.1|WP_002354864.1|2538278_2539076_-|TIGR00282-family-metallophosphoesterase
MRILFIGDVVGSLGREALATYVPKLKKKYRPQVTIANGENAASGRGITGKIYKKFLQDGVDVVTMGNHTWDNKDIFEFIDDAKKMVRPANFPEDVPGQGMVFVKVNQLELAVINLQARTFMVPLEDPFKKAAELVAIARKRTPLIFVDFHGETTSEKQAMSWFLDGQVSAVVGTHTHVQTNDARILPKGTAFLSDVGMTGPYDGILGMKREPIIEKFMTALPKRFEVVETGRTILSACILEIDDQTGQAKMIEPIQISEDRPFQE
>NZ_CP039434.1|WP_002354863.1|2539235_2540792_-|ribonuclease-Y
MVLNILLAIVGLIVGLGLGFVIAKSRHDKAINGAKISASSILENARKESETLKKEALLEAKEENQKYRSEIESELKESRLELKSQENRLIQREQTLDRKDDSLEKREGSLEEKEEKLGARQQLIDEREKEVENLINQQHQELERIASLSKEEAKSIIMKSTEEELNHELTLMVKESEQRAKEESDRKAKNLLSLAIQRCAADSVSETTVSVVTLPNDEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREYGEQAAFEVGAHTLHPDLIKILGRLRFRTSYGQNVLNHSIEVAKLAGVLAAELGEDVQLAKRAGLLHDIGKALDHEIEGSHVEIGAELAAKYKENSVVINAIASHHGDVEATSVISVLVAAADALSAARPGARSESLENYIRRLENLENISNSFEGVDSSFAVQAGREVRVMVKPEEISDLESVRLVRDIRKKIEDDLDYPGHIKVTVIRETRAVDYAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP039434_1	1.4\|1714609\|30\|NZ_CP039434\|CRISPRCasFinder,CRT,PILER-CR	1714609-1714638	30	CAJDJX010000002	Enterococcus phage Q69 genome assembly, contig: phageQ69-genome, whole genome shotgun sequence	3784-3813	0	1.0
NZ_CP039434_1	1.4\|1714609\|30\|NZ_CP039434\|CRISPRCasFinder,CRT,PILER-CR	1714609-1714638	30	MK982307	Enterococcus phage MSF2, complete genome	8126-8155	0	1.0
NZ_CP039434_1	1.4\|1714609\|30\|NZ_CP039434\|CRISPRCasFinder,CRT,PILER-CR	1714609-1714638	30	CAJDKF010000002	Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence	4263-4292	0	1.0
NZ_CP039434_1	1.4\|1714609\|30\|NZ_CP039434\|CRISPRCasFinder,CRT,PILER-CR	1714609-1714638	30	MK721190	Enterococcus phage vB_EfaS_Ef6.4, complete genome	2586-2615	1	0.967
NZ_CP039434_1	1.3\|1714543\|30\|NZ_CP039434\|CRISPRCasFinder,CRT,PILER-CR	1714543-1714572	30	NZ_AP014580	Burkholderia sp. RPE67 plasmid p2, complete sequence	15061-15090	6	0.8
NZ_CP039434_1	1.3\|1714543\|30\|NZ_CP039434\|CRISPRCasFinder,CRT,PILER-CR	1714543-1714572	30	MH920640	Synechoccus phage S-E7, complete genome	165944-165973	7	0.767
NZ_CP039434_1	1.3\|1714543\|30\|NZ_CP039434\|CRISPRCasFinder,CRT,PILER-CR	1714543-1714572	30	MH920639	Synechoccus phage S-P4, partial genome	163-192	7	0.767
NZ_CP039434_1	1.3\|1714543\|30\|NZ_CP039434\|CRISPRCasFinder,CRT,PILER-CR	1714543-1714572	30	HQ634189	Cyanophage Syn30 genomic sequence	24066-24095	7	0.767

1. spacer 1.4|1714609|30|NZ_CP039434|CRISPRCasFinder,CRT,PILER-CR matches to CAJDJX010000002 (Enterococcus phage Q69 genome assembly, contig: phageQ69-genome, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

tgcggacatgtgcgactggatagttgattt	CRISPR spacer
tgcggacatgtgcgactggatagttgattt	Protospacer
******************************

2. spacer 1.4|1714609|30|NZ_CP039434|CRISPRCasFinder,CRT,PILER-CR matches to MK982307 (Enterococcus phage MSF2, complete genome) position: , mismatch: 0, identity: 1.0

tgcggacatgtgcgactggatagttgattt	CRISPR spacer
tgcggacatgtgcgactggatagttgattt	Protospacer
******************************

3. spacer 1.4|1714609|30|NZ_CP039434|CRISPRCasFinder,CRT,PILER-CR matches to CAJDKF010000002 (Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

tgcggacatgtgcgactggatagttgattt	CRISPR spacer
tgcggacatgtgcgactggatagttgattt	Protospacer
******************************

4. spacer 1.4|1714609|30|NZ_CP039434|CRISPRCasFinder,CRT,PILER-CR matches to MK721190 (Enterococcus phage vB_EfaS_Ef6.4, complete genome) position: , mismatch: 1, identity: 0.967

tgcggacatgtgcgactggatagttgattt	CRISPR spacer
tgcggatatgtgcgactggatagttgattt	Protospacer
******.***********************

5. spacer 1.3|1714543|30|NZ_CP039434|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014580 (Burkholderia sp. RPE67 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

gcttcaggtgtcttcacaactgcttttgat	CRISPR spacer
gattcaagtgtcttcacatctgcttcggac	Protospacer
* ****.*********** ******. **.

6. spacer 1.3|1714543|30|NZ_CP039434|CRISPRCasFinder,CRT,PILER-CR matches to MH920640 (Synechoccus phage S-E7, complete genome) position: , mismatch: 7, identity: 0.767

gcttcaggtgtcttcacaactgcttttgat	CRISPR spacer
tattcaggtgtcttcactaatgcttggaat	Protospacer
  *************** * *****  .**

7. spacer 1.3|1714543|30|NZ_CP039434|CRISPRCasFinder,CRT,PILER-CR matches to MH920639 (Synechoccus phage S-P4, partial genome) position: , mismatch: 7, identity: 0.767

gcttcaggtgtcttcacaactgcttttgat	CRISPR spacer
tattcaggtgtcttcactaatgcttggaat	Protospacer
  *************** * *****  .**

8. spacer 1.3|1714543|30|NZ_CP039434|CRISPRCasFinder,CRT,PILER-CR matches to HQ634189 (Cyanophage Syn30 genomic sequence) position: , mismatch: 7, identity: 0.767

gcttcaggtgtcttcacaactgcttttgat	CRISPR spacer
tattcaggtgtcttcactaatgcttggaat	Protospacer
  *************** * *****  .**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

675769 : 683689

Planktothrix_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002355794.1\|675769_676828_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-17	30.1
WP_002355795.1\|676827_677784_+	ATP-binding cassette domain-containing protein	A0A1J0FA64	Only_Syngen_Nebraska_virus	3.2e-06	23.9
WP_010775667.1\|677824_678895_+	helix-turn-helix domain-containing protein	A0A288TXV8	Enterococcus_phage	3.8e-88	48.7
WP_002355797.1\|679295_679817_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.0e-14	33.3
WP_002355798.1\|679930_680131_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002355799.1\|680191_680551_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_033625401.1\|680596_680947_-	hypothetical protein	NA	NA	NA	NA
WP_075578605.1\|680869_681133_+	hypothetical protein	NA	NA	NA	NA
WP_002370721.1\|681044_681404_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_002361364.1\|681531_681966_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002361365.1\|681983_682499_+	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	7.7e-39	48.8
WP_137685734.1\|682372_683689_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	9.1e-84	43.2

DBSCAN-SWA_2

869748 : 905704

Enterococcus_phage(28.12%)

holin,tail,portal,capsid,terminase,head,integrase,protease

attL 868084:868101|attR 909111:909128

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
868084:868101	attL	NA	NA	NA	NA
WP_002402865.1\|869748_870879_-\|integrase	site-specific integrase	A8ATX2	Listeria_phage	1.2e-100	50.7
WP_025191718.1\|870971_871883_-	hypothetical protein	NA	NA	NA	NA
WP_010709297.1\|871993_872578_-	hypothetical protein	NA	NA	NA	NA
WP_002371611.1\|872665_873088_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_010709299.1\|873088_873427_-	helix-turn-helix transcriptional regulator	A0A1S5SDR1	Streptococcus_phage	4.8e-21	44.9
WP_002371609.1\|873715_873907_+	hypothetical protein	NA	NA	NA	NA
WP_002358109.1\|873919_874249_+	DUF771 domain-containing protein	NA	NA	NA	NA
WP_002358108.1\|874256_874445_+	hypothetical protein	A0A0S2MY96	Enterococcus_phage	2.7e-18	80.7
WP_002385643.1\|874511_874811_+	hypothetical protein	NA	NA	NA	NA
WP_002385644.1\|874807_875032_+	hypothetical protein	D2IZX4	Enterococcus_phage	4.9e-22	68.5
WP_010709301.1\|875034_875142_+	hypothetical protein	D2IZX5	Enterococcus_phage	2.7e-07	93.5
WP_002385646.1\|875134_876106_+	recombinase RecT	Q708Q2	Streptococcus_phage	1.3e-58	47.2
WP_080001840.1\|876080_876884_+	hypothetical protein	J7KGZ1	Streptococcus_phage	4.3e-60	49.8
WP_010709302.1\|876898_877678_+	DnaD domain protein	B4XYS6	Lactobacillus_phage	2.3e-42	63.4
WP_010709303.1\|877689_878529_+	ATP-binding protein	U5PVD6	Bacillus_phage	3.5e-20	31.7
WP_010706851.1\|878667_878937_+	hypothetical protein	NA	NA	NA	NA
WP_010709304.1\|879085_879556_+	DUF1064 domain-containing protein	A0A1I9KKZ1	Lactobacillus_phage	2.9e-32	46.6
WP_075575381.1\|879575_880181_+	hypothetical protein	NA	NA	NA	NA
WP_016633422.1\|880196_880403_+	hypothetical protein	A0A1B1V001	Enterococcus_phage	1.3e-24	96.8
WP_010707154.1\|880488_880737_-	hypothetical protein	NA	NA	NA	NA
WP_002373959.1\|881065_881533_+	ArpU family transcriptional regulator	D7RWH7	Brochothrix_phage	2.9e-08	27.8
WP_010820090.1\|882545_883613_+	hypothetical protein	NA	NA	NA	NA
WP_137685745.1\|883614_884634_+	hypothetical protein	NA	NA	NA	NA
WP_137685837.1\|885130_885445_+	hypothetical protein	NA	NA	NA	NA
WP_002358084.1\|885437_885749_+	HNH endonuclease	A0A1S5SFB3	Streptococcus_phage	3.0e-30	64.1
WP_080001839.1\|885822_886539_+	hypothetical protein	A0A0B5A095	Streptococcus_phage	1.2e-16	47.9
WP_002358082.1\|886631_886943_+\|terminase	terminase	D2XR14	Bacillus_phage	1.2e-15	49.0
WP_137685746.1\|886939_888619_+\|terminase	terminase large subunit	D2XR15	Bacillus_phage	2.7e-226	69.1
WP_010820087.1\|888834_890010_+\|portal	phage portal protein	A0A2H4JAJ1	uncultured_Caudovirales_phage	7.1e-72	39.3
WP_010820086.1\|889981_890752_+\|protease	Clp protease ClpP	A0A2P0ZLE3	Lactobacillus_phage	3.4e-54	49.4
WP_010820085.1\|890778_891924_+\|capsid	phage major capsid protein	A8AT98	Listeria_phage	9.2e-117	56.8
WP_010820084.1\|892001_892307_+	hypothetical protein	A0A0U4K528	Bacillus_phage	2.9e-09	47.5
WP_137685747.1\|892293_892668_+\|head,tail	phage head-tail adapter protein	A8ATA1	Listeria_phage	7.6e-28	51.7
WP_002400737.1\|892664_893057_+	hypothetical protein	A0A1S5SF89	Streptococcus_phage	4.9e-09	37.6
WP_002400736.1\|893053_893473_+	hypothetical protein	A0A059T681	Listeria_phage	5.2e-17	44.2
WP_002358071.1\|893505_894099_+\|tail	tail protein	A0A060AKE9	Staphylococcus_phage	2.6e-22	35.1
WP_033640459.1\|894172_894646_+	Ig domain-containing protein	A0A1D6Z291	Staphylococcus_phage	3.0e-21	44.4
WP_002374163.1\|894702_895050_+	hypothetical protein	NA	NA	NA	NA
WP_137685748.1\|895271_900023_+\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	7.2e-14	43.0
WP_002371567.1\|900022_900922_+\|tail	phage tail family protein	D2J071	Enterococcus_phage	2.9e-49	37.4
WP_002381461.1\|900924_902049_+	hypothetical protein	Q77MU2	Lactococcus_phage	8.8e-88	45.3
WP_033640456.1\|902059_903115_+	structural protein	D2J073	Enterococcus_phage	5.3e-50	36.7
WP_002381464.1\|903126_903915_+	hypothetical protein	D2IYX9	Enterococcus_phage	3.3e-41	71.6
WP_033640453.1\|903950_904349_+\|holin	phage holin family protein	F0PIJ6	Enterococcus_phage	2.8e-36	54.2
WP_010774118.1\|904402_905704_+	LysM peptidoglycan-binding domain-containing protein	D2J077	Enterococcus_phage	1.1e-230	95.6
909111:909128	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1079940 : 1097672

Enterococcus_phage(42.86%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137685838.1\|1079940_1082295_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.7e-19	24.1
WP_002360497.1\|1082319_1082670_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_033625330.1\|1082752_1082983_+	hypothetical protein	NA	NA	NA	NA
WP_002357857.1\|1083042_1083516_-	toxin	A0A097BY56	Enterococcus_phage	1.1e-60	71.2
WP_002357856.1\|1083562_1084045_-	helix-turn-helix transcriptional regulator	R9QTP6	Staphylococcus_phage	1.2e-20	48.6
WP_050443818.1\|1084214_1084397_+	hypothetical protein	NA	NA	NA	NA
WP_075578509.1\|1084427_1085198_+	DnaD domain protein	A0A0K0MX39	Streptococcus_phage	2.5e-33	57.0
WP_033624930.1\|1085216_1086059_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	1.3e-30	30.7
WP_010706586.1\|1086061_1086154_+	hypothetical protein	NA	NA	NA	NA
WP_010775778.1\|1086146_1086518_+	hypothetical protein	NA	NA	NA	NA
WP_002360491.1\|1086537_1086945_+	RinA family phage transcriptional activator	NA	NA	NA	NA
WP_002381949.1\|1087190_1087583_+	hypothetical protein	NA	NA	NA	NA
WP_002381948.1\|1087595_1088108_+\|tail	phage major tail protein, TP901-1 family	W6LP72	Streptococcus_phage	8.8e-35	49.4
WP_002357848.1\|1088141_1088501_+	hypothetical protein	A0A0F6N4J9	Staphylococcus_phage	7.6e-09	32.2
WP_002361692.1\|1088518_1088887_+	hypothetical protein	A0A1P8BLR3	Lactococcus_phage	1.3e-08	33.3
WP_033624931.1\|1088876_1091810_+	membrane protein	A0A1U9WR55	Streptococcus_virus	8.1e-08	24.7
WP_010775782.1\|1091811_1092738_+\|tail	phage tail family protein	C9E2K5	Enterococcus_phage	6.9e-147	78.6
WP_033624933.1\|1092750_1094208_+	phage minor structural protein	C9E2K6	Enterococcus_phage	8.6e-176	47.8
WP_033624934.1\|1094240_1096010_+	hypothetical protein	A0A097BYA8	Enterococcus_phage	1.5e-142	63.9
WP_002357842.1\|1096033_1096429_+\|holin	phage holin family protein	F0PIJ6	Enterococcus_phage	2.8e-33	48.9
WP_080270533.1\|1096574_1097672_+	N-acetylmuramoyl-L-alanine amidase	A0A139ZVY1	Enterococcus_phage	4.4e-76	44.3

DBSCAN-SWA_4

1527524 : 1536168

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016616888.1\|1527524_1528097_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.2e-24	34.6
WP_016616889.1\|1528093_1529125_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	6.3e-56	44.4
WP_002394511.1\|1529126_1530566_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-49	33.2
WP_010713331.1\|1530541_1532761_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	7.5e-147	39.9
WP_002361952.1\|1532757_1533432_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_002357271.1\|1533432_1533684_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002357270.1\|1533697_1534411_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3ELR0	Synechococcus_phage	4.3e-48	43.0
WP_010713330.1\|1534562_1535687_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_010707494.1\|1535679_1536168_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.2e-18	41.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP039434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection