CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP039431	Citricoccus sp. SGAir0453 plasmid unnamed2, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP039429	Citricoccus sp. SGAir0453 chromosome, complete genome	2 crisprs	csa3,DEDDh,WYL,DinG,cas3	0	3	0	0
NZ_CP039430	Citricoccus sp. SGAir0453 plasmid unnamed1, complete sequence	0 crisprs	PD-DExK	0	0	0	0

1. NZ_CP039429

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039429_1

• CRISPR_ID: NZ_CP039429_1
• CRISPR_location: 1318109-1318225
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP039429_1

Consensus_repeat	Method
GATGAGCGTGCCCGTCGGGATGACCG	CRISPRCasFinder

spacers of NZ_CP039429_1

>1.1|1318135|64|NZ_CP039429|CRISPRCasFinder
TCGTGGGGGCGGCCAGCGCGTGGAGCGTGGCTTCCGCGATGGCGGTGGTCCGGATCGCGGCGAG

CRISPR arrays and Neighbor proteins around NZ_CP039429_1

CRISPR arrays

The CRISPR arrays of NZ_CP039429_1

>merge|NZ_CP039429|1|1318109-1318225|CRISPRCasFinder
GACGAGGGTTCCCGGCGCGATGACCGTCGTGGGGGCGGCCAGCGCGTGGAGCGTGGCTTCCGCGATGGCGGTGGTCCGGATCGCGGCGAGGGCTATCGCTCCCGTCGGGATGACCGG

>NZ_CP039429|1|1|1318109-1318225|CRISPRCasFinder
GACGAGGGTTCCCGGCGCGATGACCG	TCGTGGGGGCGGCCAGCGCGTGGAGCGTGGCTTCCGCGATGGCGGTGGTCCGGATCGCGGCGAG
GGCTATCGCTCCCGTCGGGATGACCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039429.1|WP_137773320.1|1303221_1304688_+|argininosuccinate-lyase	unknown	unknown	gnl|CDD|179143
NZ_CP039429.1|WP_137773317.1|1300080_1300932_-|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|369056
NZ_CP039429.1|WP_137774885.1|1327348_1328404_+|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl|CDD|234713
NZ_CP039429.1|WP_137773322.1|1305505_1307764_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|226482
NZ_CP039429.1|WP_137773319.1|1301955_1303218_+|argininosuccinate-synthase	unknown	unknown	gnl|CDD|234785
NZ_CP039429.1|WP_137773326.1|1324812_1326534_+|CTP-synthase	unknown	unknown	gnl|CDD|235437
NZ_CP039429.1|WP_137773323.1|1319929_1320760_+|HAD-IIA-family-hydrolase	unknown	unknown	gnl|CDD|319832
NZ_CP039429.1|WP_137774884.1|1323025_1324798_+|DNA-repair-protein-RecN	unknown	unknown	gnl|CDD|223571
NZ_CP039429.1|WP_168199846.1|1309789_1311397_+|pyruvate-kinase	unknown	unknown	gnl|CDD|237804
NZ_CP039429.1|WP_137773321.1|1304695_1305355_+|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl|CDD|376746
NZ_CP039429.1|WP_137773325.1|1321847_1323029_+|NAD-kinase	unknown	unknown	gnl|CDD|235121
NZ_CP039429.1|WP_137773328.1|1328578_1329601_+|hypothetical-protein	unknown	unknown	gnl|CDD|237865
NZ_CP039429.1|WP_137773324.1|1320926_1321781_+|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl|CDD|224110
NZ_CP039429.1|WP_137773316.1|1299020_1299851_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP039429.1|WP_137774883.1|1318846_1319926_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_CP039429.1|WP_137774881.1|1307893_1309195_+|tyrosine--tRNA-ligase	unknown	unknown	gnl|CDD|235645
NZ_CP039429.1|WP_137773315.1|1298510_1299008_+|arginine-repressor	unknown	unknown	gnl|CDD|235116
NZ_CP039429.1|WP_137773318.1|1301265_1301772_-|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|293786
NZ_CP039429.1|WP_168199769.1|1320756_1320930_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP039429.1|WP_137773327.1|1326602_1327328_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239516

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP039429.1|WP_137773320.1|1303221_1304688_+|argininosuccinate-lyase	gnl|CDD|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP039429.1|WP_137773317.1|1300080_1300932_-|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	2.86706e-28
NZ_CP039429.1|WP_137774885.1|1327348_1328404_+|site-specific-tyrosine-recombinase-XerD	gnl|CDD|234713	PRK00283, xerD, tyrosine recombinase.	6.91686e-141
NZ_CP039429.1|WP_137773322.1|1305505_1307764_+|AAA-family-ATPase	gnl|CDD|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	9.89778e-82
NZ_CP039429.1|WP_137773319.1|1301955_1303218_+|argininosuccinate-synthase	gnl|CDD|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP039429.1|WP_137773326.1|1324812_1326534_+|CTP-synthase	gnl|CDD|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP039429.1|WP_137773323.1|1319929_1320760_+|HAD-IIA-family-hydrolase	gnl|CDD|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.23212e-88
NZ_CP039429.1|WP_137774884.1|1323025_1324798_+|DNA-repair-protein-RecN	gnl|CDD|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	4.47612e-166
NZ_CP039429.1|WP_168199846.1|1309789_1311397_+|pyruvate-kinase	gnl|CDD|237804	PRK14725, PRK14725, pyruvate kinase; Provisional.	0
NZ_CP039429.1|WP_137773321.1|1304695_1305355_+|DNA-3-methyladenine-glycosylase	gnl|CDD|376746	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG). Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.	1.09859e-70
NZ_CP039429.1|WP_137773325.1|1321847_1323029_+|NAD-kinase	gnl|CDD|235121	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	9.17748e-147
NZ_CP039429.1|WP_137773328.1|1328578_1329601_+|hypothetical-protein	gnl|CDD|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	4.12755e-06
NZ_CP039429.1|WP_137773324.1|1320926_1321781_+|TlyA-family-RNA-methyltransferase	gnl|CDD|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	1.04913e-92
NZ_CP039429.1|WP_137774883.1|1318846_1319926_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000238746
NZ_CP039429.1|WP_137774881.1|1307893_1309195_+|tyrosine--tRNA-ligase	gnl|CDD|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP039429.1|WP_137773315.1|1298510_1299008_+|arginine-repressor	gnl|CDD|235116	PRK03341, PRK03341, arginine repressor; Provisional.	8.64334e-60
NZ_CP039429.1|WP_137773318.1|1301265_1301772_-|ankyrin-repeat-domain-containing-protein	gnl|CDD|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.60726e-17
NZ_CP039429.1|WP_137773327.1|1326602_1327328_+|NUDIX-hydrolase	gnl|CDD|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.46331e-44

Protein sequences

>NZ_CP039429.1|WP_168199846.1|1309789_1311397_+|pyruvate-kinase
MHAGPERLERNAEHLLGPRPAERASRIMVTFPSAAADDPGLVARMLEAGMDVARINCAHDGRREWAAMITHLRRAEGLPEDGRTAATAGPGGGAAPGRCLVAMDLAGPKLRTGPIAPGPRVLKIRPQRSATGRVLRPAAVVLVALDSDGAAARPPRPPAERGAAVSVRDAAWLAGRSPGERIRCTDARGARRTLVVTGTEPDRVTCELAGTAYLTPGTVLTAEDGTASSLSGLPPRPQHLFVRAGETIVLTRSLAPARPVPGGPHRIGCTLAQVFEDARAGHRILFDDGRIGGVITAVTPDEITVHVEAAGVDGVPLKEQKGINLPDTRLGIPALTGEDVEALPFVAQHADMVSLSFVRSARDVAELLERVRGLGREDLDVVLKVETVEAFENLPQVLLEAMRWPDIGVMIARGDLAVEAGFERLAEVQEEILWLCESGHVPVIWATQVLDSLARTGLPSRAEVTDAAMAERAECVMLNKGPFVIEAIEFLSGVLGRMEGHVSKKRTLLRRLRSWDLPSDPASGEGRPRRDRLAD
>NZ_CP039429.1|WP_137774881.1|1307893_1309195_+|tyrosine--tRNA-ligase
MAAQSNDPSFPNVWQELKWRGLIHVSTDETALEEALSGDPITYYCGFDPTAPSLHLGNLVQILVLRRLQLAGHRPLGLVGGSTGLIGDPRQTAERVLNDRETVGEWVGYLRGQIERFLSFEGDNAARMVNNLDWTGNLSALDFLRDIGKHFRVGTMVKKETVAKRLHSDEGISYTEFSYQVLQGMDYLNLYREYGCMLQTGGSDQWGNLTSGTDLIRKVEGVHAHAFGTPLITNADGTKFGKSEGNAIWLDGHMCSPYAFYQFWLNTADADVVDRLKVFTFLHRGQIEALEEKVRTEPFRREAQKTLAWEVTSLVHGEEATRKVIAASAALFGQGDLAAVDEATLAAATAELPTAAPGLGAGGPVGIVDLLVSTGLSGSNSEARRTVAEGGASVNNVKVTDAEAAFGAEDALHGRYLIVRRGKRNMAMVDLSA
>NZ_CP039429.1|WP_137773322.1|1305505_1307764_+|AAA-family-ATPase
MTDVVPVHQTELEHERHYVARLYDRLDELRAEKERQLARVRKEGPQGSVQNVSERDAFATLYEDRLAQLYAVDDRLVFGRLDMDGGDERYIGRIGLTDEDQQRLMVDWRAPEAGAFYQATAHQRLGVRRRRHLMLRGRTVVDLEDDVLDASMLDGEAAHHGAGALLAAVTARRTGQMGDIVATIQAEQDAIIRAPLKGVLVVQGGPGTGKTAVALHRAAYLLYTHRERLKTAGVLLVGPSQSFMRYIDRVLPSLGETGVVMSSLGRLMPGTKAVPETDRRVARIKGRLFMADVVANAVANRQRIPAAPRKVDVGGTTLTIRPKQVARARDRARATGKPHNEARTTFVKIMVRELADQLKDKLEKSSGAGTTIDRAYLAEDVRTSRDVRIALNLCWMPLTPERLLADLFSKPEHLEAAAPFLKPKHRRRLLREADAPWTEADVPLLDEAAELLGELDASAGRSQAGQEAERKRNVANAEASLRNVNAMLEDLGVDGVVSAEALADANEAGDRYVSAAERASTDRSWTYGHVVVDEAQELSPMQWRLLMRRCPMKSFTIVGDIAQASSAAGVGSWAEALEPFVEDRWRLEELTVNYRTPARITRLAARVAQQAGLPVSSPRAVREGDWEPTVQRVPADGARDALLAGVAEDLERIDGGLLAVISPASLEPRVAALLRECYGERVGSGGGGLGQDVVSTTPGEAKGLEFDAVVLVEPARIVAEAGGVVGDLYVAMTRSTQTLRVLSTEDLPAGLA
>NZ_CP039429.1|WP_137773321.1|1304695_1305355_+|DNA-3-methyladenine-glycosylase
MTGDWPVLERGGLRAAPLLLGSTLTVARGGAVVSVRLTEVEAYEGEGDPGSHAYRGRTARNATMFGPAGFVYVYFTYGMHWCMNIVCGPEGASSAVLLRAGEVTAGLETAVARRGAPAGPRLASGPARLAQALGIGAGDDGSALLPGPAPREALAPAGTVPDGIWLSGVRSRRRPGTLAGPRTGVSGPGGGEAHPWRFWLPDEPSVSPYRAAAPRRRTR
>NZ_CP039429.1|WP_137773320.1|1303221_1304688_+|argininosuccinate-lyase
MADQGTHPAPGADRHGTNEGSLWGGRFAGGPADALAALSKSTDFDWRLARYDIAGSRAHARVLHAAGLLDEAELAGMLDALDRLEADVVSGAYTAAESDEDVHGSLERGLIERAGPALGGKLRAGRSRNDQIATLGRMFLRDHARLIASRLLETIDALIAQAEAHPYAPMPGRTHLQHAQPVLLSHHLLAHAWAMARDVQRLVDWDRRAAVSPYGSGALAGSSLGLDPSAVAEELGFDSAAWNSIDGTAARDVFAEFAWVCAMIGVDLSRVSEEVIFWATKEAGFVTLDDAYSTGSSIMPQKKNPDVAELARGKSGRLIGDLTGLLATLKGLPLAYNRDLQEDKEPVFDAADTLELLLPAVSGMIATLTFHTDRMAELAPQGFALATDIAEWLVRQGVPFREAHELSGAAVQLAESRGVELWDLSDEDYAGISPALTPEVRTVLSTEGSLASRSAQGGTAPDAVAAQLAELRRQLGPLRAYGASGPLA
>NZ_CP039429.1|WP_137773319.1|1301955_1303218_+|argininosuccinate-synthase
MTERIVLAYSGGLDTSVAIGWIGEATGAEVIAVAVDVGQGGEDLETVRQRALDCGAVEAYVADARDEFAEQYCMPTLKANGLYMDAYPLVSAISRPVIVRHLVAAARQFGASTVAHGCTGKGNDQVRFEVGIQTLGPDLKCIAPVRDLALTRDKAIEYAERNELPIVTTKKNPFSIDQNVWGRAVETGFLEDIWNGPTKDVYDYTDDPAFPPAPDVVTVTFEQGVPVALDGRSLSPLQVIEEMNRRAGAQGIGRIDIVEDRLVGIKSREIYEAPGAMALMTAHRELENVALEREQARFKKTVDQRWTELVYDGQWFSPLKKNLDVFVDETQKYVSGDIRMEMHGGRATVQGRRSETGLYDFSLATYDEGDAFDQSSARGFIDIFGLSSKVATERDQRVQGAGSVDSLEDVAKLSNENAGA
>NZ_CP039429.1|WP_137773318.1|1301265_1301772_-|ankyrin-repeat-domain-containing-protein
MTSDTPGAPSPHHDAPRSPEAPAAPGATPELTDEQLEFLNSLFDLARAGEAEALLSAVDQGVPVNLANHNGDTLLILATYNNHPALVRALLERGADVHRLNARGQSALACAVFVQNEESVRALLAAGADPDAGPVSARAAVEMFGLDAMRRLLDEASRDQGHGTVSQP
>NZ_CP039429.1|WP_137773317.1|1300080_1300932_-|LysM-peptidoglycan-binding-domain-containing-protein
MQNTNTAAQTSRRSLVRRSAAGLAGVAIAGAGLTALSAPANAAPVSTWDALAQCESSGDWSINTGNGYYGGLQFSLQTWQGFGGSGMPHQASKAEQIRVAENVLATQGWGAWPACSAKLGLYGTPSDTQVTTQSVDSDRAAEQAAAEERAAERAAAQERAAERAAERAAERAAAQERAAERAAEQAQANRAAAAERAAANQAAAAERAAAAQERAAVEVERASSVTPVEQSAETITVKPGDTLSKLADAHGIEGGWKALHAANADTVDNPNLIFVGQTLHLPA
>NZ_CP039429.1|WP_137773316.1|1299020_1299851_-|hypothetical-protein
MPQTTTRRAAAPRRTRGAVPTRGAIVAVLAAAGLALGGCSTRVPPLEEVWPEVSASIRDAGSVAIDGTIRRDGEEMTVDIAGQVDDSSYSGSLSVGEARVRVVGDAEHTYLKPNAAFYEALGGGAEVGEAVGDRWLRVPADEGGFTMSTFYSGFSEDLPDAAEFGESDYTSEVVRHDGEDVYRYTGMDARDGDPVTLYVSRDHRLLRVEVEGTDPSAPSSGSASPSSGSASPSAGAVDPDAADLDGGSGTVEFSDWDAVEPVEMPAQDEVFTVPGA
>NZ_CP039429.1|WP_137773315.1|1298510_1299008_+|arginine-repressor
MSAPATKTARQAAIKEVLASTPVHSQAELLDQLRSRGVSVTQGTLSRDLVELGAYRVRSDAGQLAYTVPPEGPLGAEVPSRRGPEAMEQRLAGLCRDLLVSAESSANLVILRTPPGAAQFLASVVDQARLPEVLGTIAGDDTIMVVTRAPDGGVAVAGRFLAYAG
>NZ_CP039429.1|WP_137774883.1|1318846_1319926_+|hypothetical-protein
MRSANRPERAKSPEIDEDVTGKELDRATSRELDTLDDRNRPWVARHLVMAGRLLAIDPELSFEHALAASRRGGRLGCVREAVGLTAYAAGHYAEALREFRTYRRISGDNSHLPEMVDSERALGRHAKALELAAEVDHATLDKAIRAELVMVLSGVHRDLGETDAALAVLQVPELDRNRGFSFSPRLFRAYADALEEAGRGTEAQEWRRQAGVAERALGIGDFAEPEIVDFGLDEEERPERRPRARDLVPPGATAADPDAAAEGAAPDAPARAEGDLLPTDPDAPSAADEGAAPDADAADEEPSGAPLADPDAPSSAGESDAVGQAGEAETEAPLRSGQDAEAEGGEQADRRTERTAEGD
>NZ_CP039429.1|WP_137773323.1|1319929_1320760_+|HAD-IIA-family-hydrolase
MAPRFFDGHDAVLCDLDGVVYAGDHAVAGAVETLRELGGRGVPVAYVTNNASRAPEAVAAHLNAFGLEVTGDRVFGSAAAGVALLDEVLGGRAARVLVVGSDHLRSLVGAAGHRVVGSAAEAPDAVIQGFDPSVCWADLAEASYAVRAGARWVATNTDLTIPRAEGIAPGNGALVEAVARATGTRPVAAGKPEPVLFRMAARAVGARRPLVVGDRLDTDILGGNRSGFDTALVLTGVDDRESAAAAPAEQQPTWLLAGLPDLLGRPPQRWAPGERP
>NZ_CP039429.1|WP_168199769.1|1320756_1320930_+|hypothetical-protein
MTDGRTVPTGDTAVDAVLSGLEGAGDLGPAEEIEAYRAALDGLGRLLEEQPRMPGAG
>NZ_CP039429.1|WP_137773324.1|1320926_1321781_+|TlyA-family-RNA-methyltransferase
MTPPQVAGARPGGTERLDVALARRGLARSRSEAAGLIAAGEVTVNGTVATRPALRCSEQDEVALVARGPRYVSRAGHKLAGALEAFAAVVPAGRRCLDAGASTGGFTDVLLRAGAERVVAVDVGHGQLVDSLRSDPRVNVHEGLNVRDLDVAEIGGPVDLVVSDLSFISLRLVMDPLARACREGADLVLMVKPQFEVGRQALPRTGVVVDPGARRRAVAGVLEAAGRAGLVPRGLARSPLPGQDGNLEFFLWLSRPEADGGRSGAGPVPVPGDAWLDGQAVDWD
>NZ_CP039429.1|WP_137773325.1|1321847_1323029_+|NAD-kinase
MARRILVLAHTGREDAIRAAIHTCAKLQEAGLVPVLLSADAHAIREAIGTGVVPALDSAPETLDLDCTLADIALGVVLGGDGSVLRAAELVREGGVPLLAVNLGHVGFLAESERTDLGRTVEAVVAEDYSVEERMAIDVRVYDDDTLVARTWALNEASVEKSNRERMLEVITAVDGRPISTYGCDGIVMATPTGSTAYAFSAGGPVVWPEVQAMLMVPISAHALFVRPLVVSPDSVLTVEVLPRTNEPGVLWCDGRRTVDLPLGARIEVTRSAQPVRIARLSRTPFSERLVRKFNLPTKGWRGPVTEQDRAEVAAREARYAALQAERGSSDSPGVSVVEPHHLAPRPGVVPPATAAVPVVVRKDERLPLARSSATPAEPDPWHAPGPADGAGA
>NZ_CP039429.1|WP_137774884.1|1323025_1324798_+|DNA-repair-protein-RecN
MIEYLSINGLGVIGDASVELDPGFTVVTGETGAGKTMVVTALNLLLGARADAGAVRHGASHATVEAGFRLPASNAAVGLAEQAGAVLDDEGDGDEGDGDGGDGDGAAGMRSLVVTRSVGASGSSSRSRASAGGRGVPVALLGELGEHLVAVHGQADQLRLRSAAAQRHALDAFAGTPLAAALEGYRRDYAAWRAARAELDEITTHEQDRAREAENLQRSLEEIDEAAVTAGEDEEVRARIQRLENVEELRAASLGAHAHLAGADAAEAVDVPAAEALVEAARQALLQAPGNDAELTALVARLAEVGIVLADISADLAGYAARLDDDAAADLDTAQSRLAELTRLMRLYGPELTDVLDWAERHRARLDELQGDSGRIQELTAEVERLETAVLRGASELTALRTAAAEELSARVTEELHALSMPDASFHASVTTGGEPGPHGADEVALLLQPHAGSEPRPLGKGASGGELSRVMLALEVVLAATDPVPTFVFDEVDAGVGGEAAVQIGRRLALLARHVQVIVVTHLPQVAAFADRHLRVTKDSDSDAGFTTSDVRRLEGEDRVAELARMLAGRSGSGSARDHARELLAASRA
>NZ_CP039429.1|WP_137773326.1|1324812_1326534_+|CTP-synthase
MVQRSSRFQKTPNATRQIFVTGGVASSLGKGLTASSLGHLLRARGLSVTMQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDEDLDGLNNVTTGQVYSTVIEKERRGDYLGDTVQVIPHITDEIKRRMRLPSTWGGEEDRRDPRTAGRRAPDVIITEIGGTVGDIESQPFLEAARQVRQDIGRDNVFFVHVSLVPYIGPSQELKTKPTQHSVAELRSIGIQPDAIVIRSDREVPQDVRDKIARMCDVDNDAVINCADAPSIYDIPKIIHAQGLDAYVVQSLDLKFKDVDWSRWDSLIEVVHHPKHELEVALVGKYIDLPDSYLSVTEALRAGGFGNDARVRIRWVPSDECSTESGAAKALDGVDAICVPGGFGVRGLDGKIGALRYARERGVPALGLCLGLQTMVMEYARTVLGMEGASSTEFEPDTDYPVIATMAEQEHIVAGAGDLGGTMRLGSYPAALKEGSVVAEAYGSTEVTERHRHRYEVNNAYREQLEEAGLVVSGTSPDGTLVEFVELPREVHPFYVSTQAHPEFKSRPTDPHPLFRGLVAAGLEHQRAARSRG
>NZ_CP039429.1|WP_137773327.1|1326602_1327328_+|NUDIX-hydrolase
MAYDPHDGGPVADRPAARPVERSGTAFQGAVWDVARESFRMHAGGEVLDREFIRHPGAVAVVALDDRDRVRMIRQYRHPVGRELWEVPAGLLDVEGEPMLDAARRELAEEADLVAARWDVLVDFYTTPGSSSERIRVYLARDLAEVPVDERHHRTGEEAGMPLAWVPVAEAVEAVLSGRMRNPSTALGILALHAHAARGFAGLRPADAPWEPAEEMAGATPAGDPSAPGAATGAPGRPAAP
>NZ_CP039429.1|WP_137774885.1|1327348_1328404_+|site-specific-tyrosine-recombinase-XerD
MVPEEVPRSLTRPAEAYLDHLAVERGMSPNTLAAYRRDVTRYLAWLHAAGVATPGEVARRHVTGFLQALGTGADGGHPLAPRSAARTIVAVRGLHRFWMLEQLTETDPARDVTPPRPVQELPKAIPVDQVTALLEAVPVDTPAGLRDRALLEFLYATGARISEAVGLDVDDVIGAVRDGVAGAARGPGEAAGDASREADGQATGGAAGAGDAGPAVVRLFGKGSKERIVPLGSFATAAVEAWLVRGRPALAAHGGAGGPALFLNQRGGRLSRQSAWTILKKAAERAGLETEVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHPRALG
>NZ_CP039429.1|WP_137773328.1|1328578_1329601_+|hypothetical-protein
MPIHHPPSIPDHRTVPPGRSGEHRPDGAAAVPAPARRPGAPRGAAGVLALGAVASLLLSACAAGDAGTPAEESAGPAGSSAAAAPGSSGATSATASASSGPASSTPASSTPASSTPASSSPAAAPGSASGRTHTSESGYFTWRVPAGWDVEQTELDDSQEDATGVPYETLRFRNGEETAEFRATTGLGPTDNDGPRPDLVAVLEVEPLPDVPVNRGGEGPTGEIWYRASLLRANEAVAGLPPYFDGGDEYVLAVQVVNVPAGVDPEPRDEADYWAAWTYFLPAVEGHQEGTANILAGEITQDEAEELTGERGEEAMRAVLDSPDYAQLRDLATSMEVRRP

Crispr_ID: NZ_CP039429_2

• CRISPR_ID: NZ_CP039429_2
• CRISPR_location: 1318337-1318596
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of NZ_CP039429_2

Consensus_repeat	Method
GATGAGCGTGCCCGTCGGGATGACCG	CRISPRCasFinder

spacers of NZ_CP039429_2

>2.1|1318363|34|NZ_CP039429|CRISPRCasFinder
CGCTGGGAGCGGATTCGCCCGCGAGGATCGTCGG
>2.2|1318423|28|NZ_CP039429|CRISPRCasFinder
TGGCGGCGGTTTCCGTCGCGATGACCGT
>2.3|1318477|34|NZ_CP039429|CRISPRCasFinder
CGGCGGGGATCGGCCGCGCCGCGATGAGCGTGCA
>2.4|1318537|34|NZ_CP039429|CRISPRCasFinder
TGGCGCCGGTGACTTCCGTCGTGGCGATCGCCGT

CRISPR arrays and Neighbor proteins around NZ_CP039429_2

CRISPR arrays

The CRISPR arrays of NZ_CP039429_2

>merge|NZ_CP039429|2|1318337-1318596|CRISPRCasFinder
GATGAGCGTGCCCGTCGGGATGACCGCGCTGGGAGCGGATTCGCCCGCGAGGATCGTCGGGATGAGCGTGCCCGTCGGGATGACCGTGGCGGCGGTTTCCGTCGCGATGACCGTGGCGGCGGTTTCCGTCGCGATGACCGCGGCGGGGATCGGCCGCGCCGCGATGAGCGTGCAGGGGATCGTCCCCGTCGTGAGGACCGTGGCGCCGGTGACTTCCGTCGTGGCGATCGCCGTGATGAGCGTCCCCGTCGGGATGACCG

>NZ_CP039429|2|2|1318337-1318596|CRISPRCasFinder
GATGAGCGTGCCCGTCGGGATGACCG	CGCTGGGAGCGGATTCGCCCGCGAGGATCGTCGG
GATGAGCGTGCCCGTCGGGATGACCG	TGGCGGCGGTTTCCGTCGCGATGACCGT
GGCGGCGGTTTCCGTCGCGATGACCG	CGGCGGGGATCGGCCGCGCCGCGATGAGCGTGCA
GGGGATCGTCCCCGTCGTGAGGACCG	TGGCGCCGGTGACTTCCGTCGTGGCGATCGCCGT
GATGAGCGTCCCCGTCGGGATGACCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039429.1|WP_137773320.1|1303221_1304688_+|argininosuccinate-lyase	unknown	unknown	gnl|CDD|179143
NZ_CP039429.1|WP_137773317.1|1300080_1300932_-|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|369056
NZ_CP039429.1|WP_137774885.1|1327348_1328404_+|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl|CDD|234713
NZ_CP039429.1|WP_137773322.1|1305505_1307764_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|226482
NZ_CP039429.1|WP_137773319.1|1301955_1303218_+|argininosuccinate-synthase	unknown	unknown	gnl|CDD|234785
NZ_CP039429.1|WP_137773326.1|1324812_1326534_+|CTP-synthase	unknown	unknown	gnl|CDD|235437
NZ_CP039429.1|WP_137773323.1|1319929_1320760_+|HAD-IIA-family-hydrolase	unknown	unknown	gnl|CDD|319832
NZ_CP039429.1|WP_137774884.1|1323025_1324798_+|DNA-repair-protein-RecN	unknown	unknown	gnl|CDD|223571
NZ_CP039429.1|WP_168199846.1|1309789_1311397_+|pyruvate-kinase	unknown	unknown	gnl|CDD|237804
NZ_CP039429.1|WP_137773321.1|1304695_1305355_+|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl|CDD|376746
NZ_CP039429.1|WP_137773325.1|1321847_1323029_+|NAD-kinase	unknown	unknown	gnl|CDD|235121
NZ_CP039429.1|WP_137773328.1|1328578_1329601_+|hypothetical-protein	unknown	unknown	gnl|CDD|237865
NZ_CP039429.1|WP_137773324.1|1320926_1321781_+|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl|CDD|224110
NZ_CP039429.1|WP_137773316.1|1299020_1299851_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP039429.1|WP_137774883.1|1318846_1319926_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_CP039429.1|WP_137774881.1|1307893_1309195_+|tyrosine--tRNA-ligase	unknown	unknown	gnl|CDD|235645
NZ_CP039429.1|WP_137773315.1|1298510_1299008_+|arginine-repressor	unknown	unknown	gnl|CDD|235116
NZ_CP039429.1|WP_137773318.1|1301265_1301772_-|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|293786
NZ_CP039429.1|WP_168199769.1|1320756_1320930_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP039429.1|WP_137773327.1|1326602_1327328_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239516

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP039429.1|WP_137773320.1|1303221_1304688_+|argininosuccinate-lyase	gnl|CDD|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP039429.1|WP_137773317.1|1300080_1300932_-|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	2.86706e-28
NZ_CP039429.1|WP_137774885.1|1327348_1328404_+|site-specific-tyrosine-recombinase-XerD	gnl|CDD|234713	PRK00283, xerD, tyrosine recombinase.	6.91686e-141
NZ_CP039429.1|WP_137773322.1|1305505_1307764_+|AAA-family-ATPase	gnl|CDD|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	9.89778e-82
NZ_CP039429.1|WP_137773319.1|1301955_1303218_+|argininosuccinate-synthase	gnl|CDD|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP039429.1|WP_137773326.1|1324812_1326534_+|CTP-synthase	gnl|CDD|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP039429.1|WP_137773323.1|1319929_1320760_+|HAD-IIA-family-hydrolase	gnl|CDD|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.23212e-88
NZ_CP039429.1|WP_137774884.1|1323025_1324798_+|DNA-repair-protein-RecN	gnl|CDD|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	4.47612e-166
NZ_CP039429.1|WP_168199846.1|1309789_1311397_+|pyruvate-kinase	gnl|CDD|237804	PRK14725, PRK14725, pyruvate kinase; Provisional.	0
NZ_CP039429.1|WP_137773321.1|1304695_1305355_+|DNA-3-methyladenine-glycosylase	gnl|CDD|376746	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG). Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.	1.09859e-70
NZ_CP039429.1|WP_137773325.1|1321847_1323029_+|NAD-kinase	gnl|CDD|235121	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	9.17748e-147
NZ_CP039429.1|WP_137773328.1|1328578_1329601_+|hypothetical-protein	gnl|CDD|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	4.12755e-06
NZ_CP039429.1|WP_137773324.1|1320926_1321781_+|TlyA-family-RNA-methyltransferase	gnl|CDD|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	1.04913e-92
NZ_CP039429.1|WP_137774883.1|1318846_1319926_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000238746
NZ_CP039429.1|WP_137774881.1|1307893_1309195_+|tyrosine--tRNA-ligase	gnl|CDD|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP039429.1|WP_137773315.1|1298510_1299008_+|arginine-repressor	gnl|CDD|235116	PRK03341, PRK03341, arginine repressor; Provisional.	8.64334e-60
NZ_CP039429.1|WP_137773318.1|1301265_1301772_-|ankyrin-repeat-domain-containing-protein	gnl|CDD|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.60726e-17
NZ_CP039429.1|WP_137773327.1|1326602_1327328_+|NUDIX-hydrolase	gnl|CDD|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.46331e-44

Protein sequences

>NZ_CP039429.1|WP_168199846.1|1309789_1311397_+|pyruvate-kinase
MHAGPERLERNAEHLLGPRPAERASRIMVTFPSAAADDPGLVARMLEAGMDVARINCAHDGRREWAAMITHLRRAEGLPEDGRTAATAGPGGGAAPGRCLVAMDLAGPKLRTGPIAPGPRVLKIRPQRSATGRVLRPAAVVLVALDSDGAAARPPRPPAERGAAVSVRDAAWLAGRSPGERIRCTDARGARRTLVVTGTEPDRVTCELAGTAYLTPGTVLTAEDGTASSLSGLPPRPQHLFVRAGETIVLTRSLAPARPVPGGPHRIGCTLAQVFEDARAGHRILFDDGRIGGVITAVTPDEITVHVEAAGVDGVPLKEQKGINLPDTRLGIPALTGEDVEALPFVAQHADMVSLSFVRSARDVAELLERVRGLGREDLDVVLKVETVEAFENLPQVLLEAMRWPDIGVMIARGDLAVEAGFERLAEVQEEILWLCESGHVPVIWATQVLDSLARTGLPSRAEVTDAAMAERAECVMLNKGPFVIEAIEFLSGVLGRMEGHVSKKRTLLRRLRSWDLPSDPASGEGRPRRDRLAD
>NZ_CP039429.1|WP_137774881.1|1307893_1309195_+|tyrosine--tRNA-ligase
MAAQSNDPSFPNVWQELKWRGLIHVSTDETALEEALSGDPITYYCGFDPTAPSLHLGNLVQILVLRRLQLAGHRPLGLVGGSTGLIGDPRQTAERVLNDRETVGEWVGYLRGQIERFLSFEGDNAARMVNNLDWTGNLSALDFLRDIGKHFRVGTMVKKETVAKRLHSDEGISYTEFSYQVLQGMDYLNLYREYGCMLQTGGSDQWGNLTSGTDLIRKVEGVHAHAFGTPLITNADGTKFGKSEGNAIWLDGHMCSPYAFYQFWLNTADADVVDRLKVFTFLHRGQIEALEEKVRTEPFRREAQKTLAWEVTSLVHGEEATRKVIAASAALFGQGDLAAVDEATLAAATAELPTAAPGLGAGGPVGIVDLLVSTGLSGSNSEARRTVAEGGASVNNVKVTDAEAAFGAEDALHGRYLIVRRGKRNMAMVDLSA
>NZ_CP039429.1|WP_137773322.1|1305505_1307764_+|AAA-family-ATPase
MTDVVPVHQTELEHERHYVARLYDRLDELRAEKERQLARVRKEGPQGSVQNVSERDAFATLYEDRLAQLYAVDDRLVFGRLDMDGGDERYIGRIGLTDEDQQRLMVDWRAPEAGAFYQATAHQRLGVRRRRHLMLRGRTVVDLEDDVLDASMLDGEAAHHGAGALLAAVTARRTGQMGDIVATIQAEQDAIIRAPLKGVLVVQGGPGTGKTAVALHRAAYLLYTHRERLKTAGVLLVGPSQSFMRYIDRVLPSLGETGVVMSSLGRLMPGTKAVPETDRRVARIKGRLFMADVVANAVANRQRIPAAPRKVDVGGTTLTIRPKQVARARDRARATGKPHNEARTTFVKIMVRELADQLKDKLEKSSGAGTTIDRAYLAEDVRTSRDVRIALNLCWMPLTPERLLADLFSKPEHLEAAAPFLKPKHRRRLLREADAPWTEADVPLLDEAAELLGELDASAGRSQAGQEAERKRNVANAEASLRNVNAMLEDLGVDGVVSAEALADANEAGDRYVSAAERASTDRSWTYGHVVVDEAQELSPMQWRLLMRRCPMKSFTIVGDIAQASSAAGVGSWAEALEPFVEDRWRLEELTVNYRTPARITRLAARVAQQAGLPVSSPRAVREGDWEPTVQRVPADGARDALLAGVAEDLERIDGGLLAVISPASLEPRVAALLRECYGERVGSGGGGLGQDVVSTTPGEAKGLEFDAVVLVEPARIVAEAGGVVGDLYVAMTRSTQTLRVLSTEDLPAGLA
>NZ_CP039429.1|WP_137773321.1|1304695_1305355_+|DNA-3-methyladenine-glycosylase
MTGDWPVLERGGLRAAPLLLGSTLTVARGGAVVSVRLTEVEAYEGEGDPGSHAYRGRTARNATMFGPAGFVYVYFTYGMHWCMNIVCGPEGASSAVLLRAGEVTAGLETAVARRGAPAGPRLASGPARLAQALGIGAGDDGSALLPGPAPREALAPAGTVPDGIWLSGVRSRRRPGTLAGPRTGVSGPGGGEAHPWRFWLPDEPSVSPYRAAAPRRRTR
>NZ_CP039429.1|WP_137773320.1|1303221_1304688_+|argininosuccinate-lyase
MADQGTHPAPGADRHGTNEGSLWGGRFAGGPADALAALSKSTDFDWRLARYDIAGSRAHARVLHAAGLLDEAELAGMLDALDRLEADVVSGAYTAAESDEDVHGSLERGLIERAGPALGGKLRAGRSRNDQIATLGRMFLRDHARLIASRLLETIDALIAQAEAHPYAPMPGRTHLQHAQPVLLSHHLLAHAWAMARDVQRLVDWDRRAAVSPYGSGALAGSSLGLDPSAVAEELGFDSAAWNSIDGTAARDVFAEFAWVCAMIGVDLSRVSEEVIFWATKEAGFVTLDDAYSTGSSIMPQKKNPDVAELARGKSGRLIGDLTGLLATLKGLPLAYNRDLQEDKEPVFDAADTLELLLPAVSGMIATLTFHTDRMAELAPQGFALATDIAEWLVRQGVPFREAHELSGAAVQLAESRGVELWDLSDEDYAGISPALTPEVRTVLSTEGSLASRSAQGGTAPDAVAAQLAELRRQLGPLRAYGASGPLA
>NZ_CP039429.1|WP_137773319.1|1301955_1303218_+|argininosuccinate-synthase
MTERIVLAYSGGLDTSVAIGWIGEATGAEVIAVAVDVGQGGEDLETVRQRALDCGAVEAYVADARDEFAEQYCMPTLKANGLYMDAYPLVSAISRPVIVRHLVAAARQFGASTVAHGCTGKGNDQVRFEVGIQTLGPDLKCIAPVRDLALTRDKAIEYAERNELPIVTTKKNPFSIDQNVWGRAVETGFLEDIWNGPTKDVYDYTDDPAFPPAPDVVTVTFEQGVPVALDGRSLSPLQVIEEMNRRAGAQGIGRIDIVEDRLVGIKSREIYEAPGAMALMTAHRELENVALEREQARFKKTVDQRWTELVYDGQWFSPLKKNLDVFVDETQKYVSGDIRMEMHGGRATVQGRRSETGLYDFSLATYDEGDAFDQSSARGFIDIFGLSSKVATERDQRVQGAGSVDSLEDVAKLSNENAGA
>NZ_CP039429.1|WP_137773318.1|1301265_1301772_-|ankyrin-repeat-domain-containing-protein
MTSDTPGAPSPHHDAPRSPEAPAAPGATPELTDEQLEFLNSLFDLARAGEAEALLSAVDQGVPVNLANHNGDTLLILATYNNHPALVRALLERGADVHRLNARGQSALACAVFVQNEESVRALLAAGADPDAGPVSARAAVEMFGLDAMRRLLDEASRDQGHGTVSQP
>NZ_CP039429.1|WP_137773317.1|1300080_1300932_-|LysM-peptidoglycan-binding-domain-containing-protein
MQNTNTAAQTSRRSLVRRSAAGLAGVAIAGAGLTALSAPANAAPVSTWDALAQCESSGDWSINTGNGYYGGLQFSLQTWQGFGGSGMPHQASKAEQIRVAENVLATQGWGAWPACSAKLGLYGTPSDTQVTTQSVDSDRAAEQAAAEERAAERAAAQERAAERAAERAAERAAAQERAAERAAEQAQANRAAAAERAAANQAAAAERAAAAQERAAVEVERASSVTPVEQSAETITVKPGDTLSKLADAHGIEGGWKALHAANADTVDNPNLIFVGQTLHLPA
>NZ_CP039429.1|WP_137773316.1|1299020_1299851_-|hypothetical-protein
MPQTTTRRAAAPRRTRGAVPTRGAIVAVLAAAGLALGGCSTRVPPLEEVWPEVSASIRDAGSVAIDGTIRRDGEEMTVDIAGQVDDSSYSGSLSVGEARVRVVGDAEHTYLKPNAAFYEALGGGAEVGEAVGDRWLRVPADEGGFTMSTFYSGFSEDLPDAAEFGESDYTSEVVRHDGEDVYRYTGMDARDGDPVTLYVSRDHRLLRVEVEGTDPSAPSSGSASPSSGSASPSAGAVDPDAADLDGGSGTVEFSDWDAVEPVEMPAQDEVFTVPGA
>NZ_CP039429.1|WP_137773315.1|1298510_1299008_+|arginine-repressor
MSAPATKTARQAAIKEVLASTPVHSQAELLDQLRSRGVSVTQGTLSRDLVELGAYRVRSDAGQLAYTVPPEGPLGAEVPSRRGPEAMEQRLAGLCRDLLVSAESSANLVILRTPPGAAQFLASVVDQARLPEVLGTIAGDDTIMVVTRAPDGGVAVAGRFLAYAG
>NZ_CP039429.1|WP_137774883.1|1318846_1319926_+|hypothetical-protein
MRSANRPERAKSPEIDEDVTGKELDRATSRELDTLDDRNRPWVARHLVMAGRLLAIDPELSFEHALAASRRGGRLGCVREAVGLTAYAAGHYAEALREFRTYRRISGDNSHLPEMVDSERALGRHAKALELAAEVDHATLDKAIRAELVMVLSGVHRDLGETDAALAVLQVPELDRNRGFSFSPRLFRAYADALEEAGRGTEAQEWRRQAGVAERALGIGDFAEPEIVDFGLDEEERPERRPRARDLVPPGATAADPDAAAEGAAPDAPARAEGDLLPTDPDAPSAADEGAAPDADAADEEPSGAPLADPDAPSSAGESDAVGQAGEAETEAPLRSGQDAEAEGGEQADRRTERTAEGD
>NZ_CP039429.1|WP_137773323.1|1319929_1320760_+|HAD-IIA-family-hydrolase
MAPRFFDGHDAVLCDLDGVVYAGDHAVAGAVETLRELGGRGVPVAYVTNNASRAPEAVAAHLNAFGLEVTGDRVFGSAAAGVALLDEVLGGRAARVLVVGSDHLRSLVGAAGHRVVGSAAEAPDAVIQGFDPSVCWADLAEASYAVRAGARWVATNTDLTIPRAEGIAPGNGALVEAVARATGTRPVAAGKPEPVLFRMAARAVGARRPLVVGDRLDTDILGGNRSGFDTALVLTGVDDRESAAAAPAEQQPTWLLAGLPDLLGRPPQRWAPGERP
>NZ_CP039429.1|WP_168199769.1|1320756_1320930_+|hypothetical-protein
MTDGRTVPTGDTAVDAVLSGLEGAGDLGPAEEIEAYRAALDGLGRLLEEQPRMPGAG
>NZ_CP039429.1|WP_137773324.1|1320926_1321781_+|TlyA-family-RNA-methyltransferase
MTPPQVAGARPGGTERLDVALARRGLARSRSEAAGLIAAGEVTVNGTVATRPALRCSEQDEVALVARGPRYVSRAGHKLAGALEAFAAVVPAGRRCLDAGASTGGFTDVLLRAGAERVVAVDVGHGQLVDSLRSDPRVNVHEGLNVRDLDVAEIGGPVDLVVSDLSFISLRLVMDPLARACREGADLVLMVKPQFEVGRQALPRTGVVVDPGARRRAVAGVLEAAGRAGLVPRGLARSPLPGQDGNLEFFLWLSRPEADGGRSGAGPVPVPGDAWLDGQAVDWD
>NZ_CP039429.1|WP_137773325.1|1321847_1323029_+|NAD-kinase
MARRILVLAHTGREDAIRAAIHTCAKLQEAGLVPVLLSADAHAIREAIGTGVVPALDSAPETLDLDCTLADIALGVVLGGDGSVLRAAELVREGGVPLLAVNLGHVGFLAESERTDLGRTVEAVVAEDYSVEERMAIDVRVYDDDTLVARTWALNEASVEKSNRERMLEVITAVDGRPISTYGCDGIVMATPTGSTAYAFSAGGPVVWPEVQAMLMVPISAHALFVRPLVVSPDSVLTVEVLPRTNEPGVLWCDGRRTVDLPLGARIEVTRSAQPVRIARLSRTPFSERLVRKFNLPTKGWRGPVTEQDRAEVAAREARYAALQAERGSSDSPGVSVVEPHHLAPRPGVVPPATAAVPVVVRKDERLPLARSSATPAEPDPWHAPGPADGAGA
>NZ_CP039429.1|WP_137774884.1|1323025_1324798_+|DNA-repair-protein-RecN
MIEYLSINGLGVIGDASVELDPGFTVVTGETGAGKTMVVTALNLLLGARADAGAVRHGASHATVEAGFRLPASNAAVGLAEQAGAVLDDEGDGDEGDGDGGDGDGAAGMRSLVVTRSVGASGSSSRSRASAGGRGVPVALLGELGEHLVAVHGQADQLRLRSAAAQRHALDAFAGTPLAAALEGYRRDYAAWRAARAELDEITTHEQDRAREAENLQRSLEEIDEAAVTAGEDEEVRARIQRLENVEELRAASLGAHAHLAGADAAEAVDVPAAEALVEAARQALLQAPGNDAELTALVARLAEVGIVLADISADLAGYAARLDDDAAADLDTAQSRLAELTRLMRLYGPELTDVLDWAERHRARLDELQGDSGRIQELTAEVERLETAVLRGASELTALRTAAAEELSARVTEELHALSMPDASFHASVTTGGEPGPHGADEVALLLQPHAGSEPRPLGKGASGGELSRVMLALEVVLAATDPVPTFVFDEVDAGVGGEAAVQIGRRLALLARHVQVIVVTHLPQVAAFADRHLRVTKDSDSDAGFTTSDVRRLEGEDRVAELARMLAGRSGSGSARDHARELLAASRA
>NZ_CP039429.1|WP_137773326.1|1324812_1326534_+|CTP-synthase
MVQRSSRFQKTPNATRQIFVTGGVASSLGKGLTASSLGHLLRARGLSVTMQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDEDLDGLNNVTTGQVYSTVIEKERRGDYLGDTVQVIPHITDEIKRRMRLPSTWGGEEDRRDPRTAGRRAPDVIITEIGGTVGDIESQPFLEAARQVRQDIGRDNVFFVHVSLVPYIGPSQELKTKPTQHSVAELRSIGIQPDAIVIRSDREVPQDVRDKIARMCDVDNDAVINCADAPSIYDIPKIIHAQGLDAYVVQSLDLKFKDVDWSRWDSLIEVVHHPKHELEVALVGKYIDLPDSYLSVTEALRAGGFGNDARVRIRWVPSDECSTESGAAKALDGVDAICVPGGFGVRGLDGKIGALRYARERGVPALGLCLGLQTMVMEYARTVLGMEGASSTEFEPDTDYPVIATMAEQEHIVAGAGDLGGTMRLGSYPAALKEGSVVAEAYGSTEVTERHRHRYEVNNAYREQLEEAGLVVSGTSPDGTLVEFVELPREVHPFYVSTQAHPEFKSRPTDPHPLFRGLVAAGLEHQRAARSRG
>NZ_CP039429.1|WP_137773327.1|1326602_1327328_+|NUDIX-hydrolase
MAYDPHDGGPVADRPAARPVERSGTAFQGAVWDVARESFRMHAGGEVLDREFIRHPGAVAVVALDDRDRVRMIRQYRHPVGRELWEVPAGLLDVEGEPMLDAARRELAEEADLVAARWDVLVDFYTTPGSSSERIRVYLARDLAEVPVDERHHRTGEEAGMPLAWVPVAEAVEAVLSGRMRNPSTALGILALHAHAARGFAGLRPADAPWEPAEEMAGATPAGDPSAPGAATGAPGRPAAP
>NZ_CP039429.1|WP_137774885.1|1327348_1328404_+|site-specific-tyrosine-recombinase-XerD
MVPEEVPRSLTRPAEAYLDHLAVERGMSPNTLAAYRRDVTRYLAWLHAAGVATPGEVARRHVTGFLQALGTGADGGHPLAPRSAARTIVAVRGLHRFWMLEQLTETDPARDVTPPRPVQELPKAIPVDQVTALLEAVPVDTPAGLRDRALLEFLYATGARISEAVGLDVDDVIGAVRDGVAGAARGPGEAAGDASREADGQATGGAAGAGDAGPAVVRLFGKGSKERIVPLGSFATAAVEAWLVRGRPALAAHGGAGGPALFLNQRGGRLSRQSAWTILKKAAERAGLETEVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHPRALG
>NZ_CP039429.1|WP_137773328.1|1328578_1329601_+|hypothetical-protein
MPIHHPPSIPDHRTVPPGRSGEHRPDGAAAVPAPARRPGAPRGAAGVLALGAVASLLLSACAAGDAGTPAEESAGPAGSSAAAAPGSSGATSATASASSGPASSTPASSTPASSTPASSSPAAAPGSASGRTHTSESGYFTWRVPAGWDVEQTELDDSQEDATGVPYETLRFRNGEETAEFRATTGLGPTDNDGPRPDLVAVLEVEPLPDVPVNRGGEGPTGEIWYRASLLRANEAVAGLPPYFDGGDEYVLAVQVVNVPAGVDPEPRDEADYWAAWTYFLPAVEGHQEGTANILAGEITQDEAEELTGERGEEAMRAVLDSPDYAQLRDLATSMEVRRP

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	431096-431123	5	0.821
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	MN106244	Klebsiella phage Soft, complete genome	24570-24597	5	0.821
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	352837-352864	6	0.786
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	MH697592	Mycobacterium phage Rando14, complete genome	29048-29075	6	0.786
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP022192	Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence	20604-20637	6	0.824
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	207273-207300	7	0.75
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	454721-454748	7	0.75
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	883189-883216	7	0.75
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	37716-37743	7	0.75
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	728425-728452	7	0.75
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	88855-88882	7	0.75
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP014302	Bosea sp. PAMC 26642 strain PAMC26642 plasmid unnamed, complete sequence	3691-3724	7	0.794
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP014302	Bosea sp. PAMC 26642 strain PAMC26642 plasmid unnamed, complete sequence	3507-3540	7	0.794
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	402270-402297	8	0.714
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	256920-256947	8	0.714
NZ_CP039429_2	2.2|1318423|28|NZ_CP039429|CRISPRCasFinder	1318423-1318450	28	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	262541-262568	8	0.714
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP022748	Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence	124567-124600	8	0.765
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	76494-76527	8	0.765
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP046256	Sphingobium sp. CAP-1 plasmid p3, complete sequence	106228-106261	8	0.765
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	575610-575643	9	0.735
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1264283-1264316	9	0.735
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	317564-317597	9	0.735
NZ_CP039429_2	2.3|1318477|34|NZ_CP039429|CRISPRCasFinder	1318477-1318510	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	868087-868120	9	0.735
NZ_CP039429_2	2.4|1318537|34|NZ_CP039429|CRISPRCasFinder	1318537-1318570	34	MF098556	Hot spring virus BHS1, partial genome	10337-10370	10	0.706
NZ_CP039429_2	2.4|1318537|34|NZ_CP039429|CRISPRCasFinder	1318537-1318570	34	NZ_LN831788	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence	74806-74839	10	0.706

1. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 5, identity: 0.821

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
tggcggcggtctccgtcgggatgcgggt	Protospacer
**********.******* ****   **

2. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to MN106244 (Klebsiella phage Soft, complete genome) position: , mismatch: 5, identity: 0.821

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
cgtcagcggtatccgacgcgatgaccgt	Protospacer
.* *.***** **** ************

3. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 6, identity: 0.786

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
gggcggcgattgccgtcgcgatgatccc	Protospacer
 *******.** ************.* .

4. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to MH697592 (Mycobacterium phage Rando14, complete genome) position: , mismatch: 6, identity: 0.786

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
tggcggccgttgccgtcgcgatggtggc	Protospacer
******* *** ***********.. *.

5. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP022192 (Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.824

cggcggggatcggccgcgccgcgat---gagcgtgca	CRISPR spacer
cggcggggatcgcccgcgccgcgacagagagcct---	Protospacer
************ ***********.   **** *   

6. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.75

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
tggcggcggtttccggcgtgatgcgttc	Protospacer
*************** **.****  . .

7. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 7, identity: 0.75

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
accacgcgggttccgtcgcgatgaccat	Protospacer
     **** ****************.*

8. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.75

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
gcaaggcggttttcgtcgcggtgaccgg	Protospacer
  . ********.*******.****** 

9. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.75

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
tggcggcggtttccggcgtgatgcgttc	Protospacer
*************** **.****  . .

10. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 7, identity: 0.75

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
accacgcgggttccgtcgcgatgaccat	Protospacer
     **** ****************.*

11. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 7, identity: 0.75

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
tggcggcggtttccggcgtgatgcgttc	Protospacer
*************** **.****  . .

12. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP014302 (Bosea sp. PAMC 26642 strain PAMC26642 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cggcggggatcggccgcgccgcgatgagcgtgca	CRISPR spacer
ggatgcagaccggccgcgccgcgatgagcctgca	Protospacer
 *..* .**.******************* ****

13. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP014302 (Bosea sp. PAMC 26642 strain PAMC26642 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cggcggggatcggccgcgccgcgatgagcgtgca	CRISPR spacer
ggatgcagaccggccgcgccgcgatgagcctgca	Protospacer
 *..* .**.******************* ****

14. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.714

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
gggcgacggtttccgtcgcgatcgaaaa	Protospacer
 ****.**************** .  . 

15. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 8, identity: 0.714

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
gggcgacggtttccgtcgcgatcgagaa	Protospacer
 ****.**************** .  . 

16. spacer 2.2|1318423|28|NZ_CP039429|CRISPRCasFinder matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 8, identity: 0.714

tggcggcggtttccgtcgcgatgaccgt	CRISPR spacer
gggcgacggtttccgtcgcgatcgagaa	Protospacer
 ****.**************** .  . 

17. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP022748 (Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

cggcggggatcggccgcgccgcgatgagcgtgca	CRISPR spacer
cggcggtgatcggccgcgacgcgatcgccatcga	Protospacer
****** *********** ****** . *.*  *

18. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 8, identity: 0.765

cggcggggatcggccgcgccgcgatgagcgtgca	CRISPR spacer
cggcggtgatcggccgcgacgcgatcgccatcga	Protospacer
****** *********** ****** . *.*  *

19. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP046256 (Sphingobium sp. CAP-1 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.765

cggcggggatcggccgcgccgcgatgagcgtgca	CRISPR spacer
cggcggtgatcggccgcgacgcgatcgccatcga	Protospacer
****** *********** ****** . *.*  *

20. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.735

cggcggg-gatcggccgcgccgcgatgagcgtgca	CRISPR spacer
-aacgagcgatcggcggcgccgcgatgatcgtcgt	Protospacer
 ..**.* ******* ************ ***   

21. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

cggcggggatcggccgcgccgcgatgagcgtgca	CRISPR spacer
gcgtgaggatcggccgagccgcgacgagcgcccg	Protospacer
  *.*.********** *******.*****. *.

22. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 9, identity: 0.735

cggcggg-gatcggccgcgccgcgatgagcgtgca	CRISPR spacer
-aacgagcgatcggcggcgccgcgatgatcgtcgt	Protospacer
 ..**.* ******* ************ ***   

23. spacer 2.3|1318477|34|NZ_CP039429|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.735

cggcggggatcggccgcgccgcgatgagcgtgca	CRISPR spacer
gcgtgaggatcggccgagccgcgacgagcgcccg	Protospacer
  *.*.********** *******.*****. *.

24. spacer 2.4|1318537|34|NZ_CP039429|CRISPRCasFinder matches to MF098556 (Hot spring virus BHS1, partial genome) position: , mismatch: 10, identity: 0.706

tggcgccggtgacttccgtcgtggcgatcgccgt	CRISPR spacer
ccgcgcgcgtgacttccgtcgtggcgattatttc	Protospacer
. ****  ********************.... .

25. spacer 2.4|1318537|34|NZ_CP039429|CRISPRCasFinder matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 10, identity: 0.706

tggcgccggtgacttccgtcgtggcgatcgccgt	CRISPR spacer
tggcgccggtgacttcggtcttggccggcatgtc	Protospacer
**************** *** **** . *..  .