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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP034035 Brenneria rubrifaciens strain 6D370 chromosome, complete genome 6 crisprs RT,cas3,DEDDh,DinG,csa3 0 1 3 0

Results visualization

1. NZ_CP034035
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034035_1 199088-199186 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034035_2 361073-361179 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034035_3 371090-371190 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034035_4 958269-958382 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034035_5 1059027-1059134 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034035_6 3085363-3085460 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP034035_4 4.1|958310|32|NZ_CP034035|CRISPRCasFinder 958310-958341 32 MT121967 Pseudomonas phage SC_9_H1H8_2017 head-tail joining protein, capsid family protein, portal protein, terminase, endonuclease, primase, and nucleotide kinase genes, complete cds 5716-5747 8 0.75
NZ_CP034035_4 4.1|958310|32|NZ_CP034035|CRISPRCasFinder 958310-958341 32 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 1033450-1033481 9 0.719

1. spacer 4.1|958310|32|NZ_CP034035|CRISPRCasFinder matches to MT121967 (Pseudomonas phage SC_9_H1H8_2017 head-tail joining protein, capsid family protein, portal protein, terminase, endonuclease, primase, and nucleotide kinase genes, complete cds) position: , mismatch: 8, identity: 0.75

actcgccccatccttggggctcgcccttgggt	CRISPR spacer
gcacgccgaatccttggggctcgcccaggcgg	Protospacer
.* ****  *****************  * * 

2. spacer 4.1|958310|32|NZ_CP034035|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.719

actcgccccatccttggggctcgcccttgggt	CRISPR spacer
cgccgccccatccttgaggatcgcccggcgct	Protospacer
  .*************.** ******   * *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 382531 : 438096 41 Tupanvirus(25.0%) tRNA,holin,transposase,integrase attL 422777:422792|attR 438258:438273
DBSCAN-SWA_2 2021420 : 2033556 13 Acanthocystis_turfacea_Chlorella_virus(12.5%) tRNA NA
DBSCAN-SWA_3 3709979 : 3799878 90 Enterobacteria_phage(28.26%) protease,portal,head,terminase,plate,tail,tRNA,transposase,capsid,integrase,holin,lysis attL 3726512:3726528|attR 3807044:3807060
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage