CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040182	Serratia fonticola strain MS5 chromosome, complete genome	9 crisprs	DEDDh,csa3,DinG,cas3,WYL	3	2	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040182_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_1

1314258-1314402

Orphan

Consensus_repeat	Method
CGGTGCTTAGGGAGAATCACCATACTTTCAGCCTAACTCGATC	CRISPRCasFinder
AGGGAGAATCACCATACTTTCAGCCTAACTCGATCAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040182_1

>merge|NZ_CP040182|1|1314258-1314402|CRISPRCasFinder,PILER-CR
CGGTGCTTAGGGAGAATCACCATACTTTCAGCCTAACTCGATCAGCTCTTTTGCAAGTAAAGAGGTGATTTCAGCCTAACTCGATTACCCTTTCATTCAGCGGTGCTTAGGGAGAATCACCATACTTTCAGCCTAACTCGATCGG

>NZ_CP040182|1|1|1314258-1314400|CRISPRCasFinder
CGGTGCTTAGGGAGAATCACCATACTTTCAGCCTAACTCGATC	AGCTCTTTTGCAAGTAAAGAGGTGATTTCAGCCTAACTCGATTACCCTTTCATTCAG
CGGTGCTTAGGGAGAATCACCATACTTTCAGCCTAACTCGATC

>NZ_CP040182|1|1|1314266-1314402|PILER-CR
AGGGAGAATCACCATACTTTCAGCCTAACTCGATCAG	CTCTTTTGCAAGTAAAGAGGTG
ATTTCAGCCTAACTCGATTACCCTTTCATTCAGCGGT	GCTTAGGGAGAATCACCATACTT
TCAGCCTAACTCGATCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_021808134.1\|1321251_1321470_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374351
NZ_CP040182.1\|WP_024485175.1\|1304737_1305802_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP040182.1\|WP_021182184.1\|1318597_1319146_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP040182.1\|WP_021182185.1\|1319198_1319942_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP040182.1\|WP_004091602.1\|1309407_1309593_+\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NZ_CP040182.1\|WP_071682367.1\|1320713_1321268_-\|lysozyme	unknown	unknown	gnl\|CDD\|381620
NZ_CP040182.1\|WP_071682369.1\|1310672_1311239_+\|fructose-1-phosphate/6-phosphogluconate-phosphatase	unknown	unknown	gnl\|CDD\|182679
NZ_CP040182.1\|WP_059199887.1\|1311745_1313308_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP040182.1\|WP_004932501.1\|1318330_1318579_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP040182.1\|WP_059199883.1\|1302541_1303933_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP040182.1\|WP_071682368.1\|1313472_1313988_+\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
NZ_CP040182.1\|WP_059199884.1\|1304136_1304625_+\|nicotinamide-nucleotide-amidase	unknown	unknown	gnl\|CDD\|179627
NZ_CP040182.1\|WP_024485176.1\|1305860_1306394_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|234646
NZ_CP040182.1\|WP_021182183.1\|1316754_1318116_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP040182.1\|WP_094982645.1\|1314439_1315684_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|236933
NZ_CP040182.1\|WP_021182189.1\|1320437_1320656_-\|DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|137468
NZ_CP040182.1\|WP_039996317.1\|1311235_1311664_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
NZ_CP040182.1\|WP_024485183.1\|1320019_1320376_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP040182.1\|WP_024530732.1\|1315793_1316588_-\|inner-membrane-protein-YpjD	unknown	unknown	gnl\|CDD\|226621
NZ_CP040182.1\|WP_071682370.1\|1306525_1309153_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_021808134.1\|1321251_1321470_-\|hypothetical-protein	gnl\|CDD\|374351	pfam16080, Phage_holin_2_3, Bacteriophage holin family HP1. Phage_holin_2_3 is a family of small hydrophobic phage proteins called holins with one transmembrane domain. Holins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	5.93847e-10
NZ_CP040182.1\|WP_024485175.1\|1304737_1305802_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP040182.1\|WP_021182184.1\|1318597_1319146_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	5.89374e-82
NZ_CP040182.1\|WP_021182185.1\|1319198_1319942_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.07974e-165
NZ_CP040182.1\|WP_004091602.1\|1309407_1309593_+\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	1.56406e-34
NZ_CP040182.1\|WP_071682367.1\|1320713_1321268_-\|lysozyme	gnl\|CDD\|381620	cd16901, lyz_P1, P1 lysozyme Lyz-like proteins. Enterobacteria phage P1 lysozyme Lyz is secreted to the Escherichia coli periplasm where it is membrane bound and inactive. Activation involves the release from the membrane, an intramolecular thiol-disulfide isomerization and extensive structural rearrangement of the N-terminal region. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	3.35808e-65
NZ_CP040182.1\|WP_071682369.1\|1310672_1311239_+\|fructose-1-phosphate/6-phosphogluconate-phosphatase	gnl\|CDD\|182679	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase.	5.11912e-141
NZ_CP040182.1\|WP_059199887.1\|1311745_1313308_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP040182.1\|WP_004932501.1\|1318330_1318579_+\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	1.60633e-43
NZ_CP040182.1\|WP_059199883.1\|1302541_1303933_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.15959e-86
NZ_CP040182.1\|WP_071682368.1\|1313472_1313988_+\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	2.19399e-105
NZ_CP040182.1\|WP_059199884.1\|1304136_1304625_+\|nicotinamide-nucleotide-amidase	gnl\|CDD\|179627	PRK03661, PRK03661, nicotinamide-nucleotide amidase.	8.69544e-103
NZ_CP040182.1\|WP_024485176.1\|1305860_1306394_+\|recombination-regulator-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	5.66031e-61
NZ_CP040182.1\|WP_021182183.1\|1316754_1318116_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP040182.1\|WP_094982645.1\|1314439_1315684_-\|HlyC/CorC-family-transporter	gnl\|CDD\|236933	PRK11573, PRK11573, hypothetical protein; Provisional.	0
NZ_CP040182.1\|WP_021182189.1\|1320437_1320656_-\|DNA-binding-transcriptional-regulator	gnl\|CDD\|137468	PRK09678, PRK09678, DNA-binding transcriptional regulator; Provisional.	3.41751e-29
NZ_CP040182.1\|WP_039996317.1\|1311235_1311664_+\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	2.08788e-30
NZ_CP040182.1\|WP_024485183.1\|1320019_1320376_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	3.5814e-70
NZ_CP040182.1\|WP_024530732.1\|1315793_1316588_-\|inner-membrane-protein-YpjD	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.07214e-109
NZ_CP040182.1\|WP_071682370.1\|1306525_1309153_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0

>NZ_CP040182.1|WP_071682368.1|1313472_1313988_+|S-ribosylhomocysteine-lyase
MPLLDSFTVDHTRMAAPAVRVAKTMQTPHGDTITVFDLRFCRPNLEVMPERGIHTLEHLFAGFMRDHLNGDGVEIIDISPMGCRTGFYMSLIGVPEEQRVADAWQAAMADVLKVTDQRKIPELNEFQCGTYHMHSLEEAQEIAKHILEHGVVVNHNEELALPKDKLQELHI
>NZ_CP040182.1|WP_059199887.1|1311745_1313308_+|glutamate--cysteine-ligase
MIPDVSQALSWLEAHPHALKGIRRGIERETLRVTADGTLASTGHPEQLGAALTHHWITTDFAEALLEFITPVDDDLDHLLTFLRDIHRHVARNLGDERMWPLSMPCFINAEQDIELAQFGTSNVGRMKTLYREGLKNRYGALMQTISGVHYNFSLPLEFWQAWAGVEDEESGKEQISAGYFRLIRNYYRFGWVIPYLFGASPAICSSFLKGRETDLPFERNERGMCYLPYATSLRLSDLGYTNKSQSNLGITFNDLQTYVQGLKRAIATPSEDYAKLGVKEGDRYLQLNSNVLQIENELYAPIRPKRVTHSGETPSDALLRGGIEYIEVRSLDINPFSPIGVDAVQARFLDLFLVWCVLADAPEMSSDELLCTRKNWNRVILEGRKPGQTIGIGCNDTREPLDKVGKALFDDLKRVAEVLDSEAGDRQYQQVCEQLVAAFDDPELTFSARILKKMKAQGTGNVGLELAEKYRKMLIEEPLELLTEEQLAQEQQASWQRQRDIEASDTLSFEQFLKENGGG
>NZ_CP040182.1|WP_039996317.1|1311235_1311664_+|DedA-family-protein
MSSTLAVMSLFGSSFLSATLLPGNSEIVLVALLTNSSASPGLLVLAATLGNTLGGLTNVIIGRLLPALKPQRGLETALGWLQRFGPAALLLSWVPVVGDLLCVLAGWLRMPWGFVTLFLCIGKALRYIILTMITLQGIAWWH
>NZ_CP040182.1|WP_071682369.1|1310672_1311239_+|fructose-1-phosphate/6-phosphogluconate-phosphatase
MYDRYQGLIFDMDGTILDTEPTHLKAWHEVLARYGMKFDAAAMTGLNGSPTWRIAQAVIAAHQADLDPHQLAAEKTRAVESMLLDTVRPLPLIEVVKSYHGRRPMAVGTGSEHRMAEMLLRHLGLFDCFDAIVGADDVQRHKPEPETFLRCAELIGVPPEHCVVFEDADFGIQAARSANMAVVDVRTL
>NZ_CP040182.1|WP_004091602.1|1309407_1309593_+|carbon-storage-regulator-CsrA
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQTTY
>NZ_CP040182.1|WP_071682370.1|1306525_1309153_+|alanine--tRNA-ligase
MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFNLPKEKLWVTVYETDDEAFDIWQKQIGVPAERIIRIGDNKGAAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFTTLIAAVAKLTGATDMGNKSLRVIADHIRSCAFLIADGVIPSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQAQVEQVLKSEEEQFARTLERGLALLDDELAKLQGDTLDGETAFRLYDTYGFPVDLTADVCRERGLKVDEQGFEQAMEAQRRRARESSGFGADYNSLIRVDGASQFNGYDREEQQAKVTALFRDGQPVDEIHAGEEAVVVLDETPFYGESGGQVGDKGVLKAAGIEFVVSDAQKYGQAIGHLGKLASGSLKLNDRVDAVIDSERRNRIRLNHSATHLLHAALRQILGEHVAQKGSLVNDKYLRFDFSHSEAMKPEQIRAVEDLVNQQIRRNLSVQTEVMALDDAKEKGAMALFGEKYDDHVRVLTMGDFSTELCGGTHANRTGDIGLFRIQSESGTAAGIRRIEAVTGEGAIATLHQQSDLLQDVAHLVKGDSNNLSDKVRAVLDRTRALEKELQQLKDQQAAQESASLSSQAKLVNGVKLLVSQLDNVEPKIMRTMVDDLKNQLGSAIIVLATVEEGKVSLIAGVTKDLTDRVKAGELIGNIAQQVGGKGGGRPDMAMAGGSDANALPAALNSVEAWVAAKL
>NZ_CP040182.1|WP_024485176.1|1305860_1306394_+|recombination-regulator-RecX
MNDVGSQSAGNQQNTLISRAMRLLSQRDHSEAELRRKLAAPPFMANARFGSKSPTEPPEEPVDPAIIEQVISYCYQHNWLDDRRFANSFIASRSRKGYGAQRIRSELMQKGVDKEIVQDALAECEIDWCEQAREIALRKFGDPLPVEWKEKAKVLRYLLYRGFFQEEIQSIYRDFAQ
>NZ_CP040182.1|WP_024485175.1|1304737_1305802_+|recombinase-RecA
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVIGSETRVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGKSNACNFLKENPAIAAELDKKLRDLLLHSNGEAAAASAEKADDNEAETSEEF
>NZ_CP040182.1|WP_059199884.1|1304136_1304625_+|nicotinamide-nucleotide-amidase
MSEKRLRELSIAVGQRLKANGRWISCAESCTGGGIAKAITDIAGSSAYFDRGFVTYSNAAKHELLGVAEATLQAHGAVSEEVVREMAQGAMHAAKADLALSVSGIAGPDGGSVEKPVGTVWFGFAERSGRVLARKMQFTGDRDAVRLQATLFALQTALDEFL
>NZ_CP040182.1|WP_059199883.1|1302541_1303933_-|MFS-transporter
MKKTLGVFFPLYTTTLLMLLGSGLLTTYISLRLTSINVSGALIGAIIAANYIGLVIGGKVGHFLIARVGHIRAYVSCAGIITAAVLGHGLTEYIPVWVVLRLIIGLCMMCQYMVLESWLNDQSESNQRGMVFGFYMAASYLGMSLGQIVLMLQANLGISTLLLIALCFSLCLVPIALTTRTNARHMSPAPMELRYFVHAIPKVLATTLVIGMVVGSFYGLAPVYASQQALTTQQTGLFMAIAIFAGLVAQFPLSWLSDRYNRTLLMRVNALLLVIAALPLALLPHIDFPVLLIVGFIVSMLQFTLYPLAVALANDMIEPERRVSLAACLLMAFGVGASIGPLAVGALIQPLGGNILYVFFALCGLLIMAFSRTVKQDESQFVQDAPVPHIAMPDSLSSSPLSPALNPTFDEQTIQDTMPAPEAAPDPLAEAPLAELLPEEEPAHPQGADPEEDTGLKKAYTML
>NZ_CP040182.1|WP_094982645.1|1314439_1315684_-|HlyC/CorC-family-transporter
MVVVSAYFSASETGMMTLNRYRLRHLSKQGNRAARRVEKLLQKPDRLIGLVLIGNNLVNILASALGTIVGMRLYGDIGVAIATGVLTFVVLLFAEVLPKTFAALYPERIAFPSSFLLAPLQKVMLPLVWLLNGITTLVLRIFGIRTNVRISGALSKEELRTIVNESQSKISRRNQDMLISVLDLEKVTVEDIMVPRNEIVGIDINDDWKSIMRQLTHSPHGRIVLYRDSLDDSISMLRVREAYRLMTEKKEFNKENLLRAADEIYYVPEGTPLNVQLVKFQRNKEKVGIVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVNPQSDGSVLIDGSANVRELNKAFNWTLPATEARTINGMLLEELEEIPSIGTRLRISHYDIDILDVQDNMIKQVRVTPIKSLQASVQNH
>NZ_CP040182.1|WP_024530732.1|1315793_1316588_-|inner-membrane-protein-YpjD
MPVFSLVALMAYLLSLGLIIPSLLRKNSAYRRLALVSAVVALVCHAIALQQRIFDVSAGQNLSLLNIGSIVGLIICSVMTYVASRDRGWFLLPIVYSFAMINLAFASFLPGEFITHLEASPELMVHIGLALFSYSTLIIATLYALQLAWLDYLLKHKKLSFSADMPPLMSIERKMFHITQIGVVLLTLTLCTGLLYMDNLFSKENVHKAVLSIMAWFVYIVLLWGHYHEGWRGRRVVWFSFAGSFLLTMAYFGSRLLQELMMVR
>NZ_CP040182.1|WP_021182183.1|1316754_1318116_+|signal-recognition-particle-protein
MFENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKSELIAAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIRQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLTDFLDQLKQMRNMGGMASMLSKLPGAGQLPDNVKSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKRRIAMGSGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRGMKGMMPPGFPGR
>NZ_CP040182.1|WP_004932501.1|1318330_1318579_+|30S-ribosomal-protein-S16
MVTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQAEALRLDLDRIEHWVGLGATVSDRVHALIKDAKKAA
>NZ_CP040182.1|WP_021182184.1|1318597_1319146_+|ribosome-maturation-factor-RimM
MSKQLKPVAPKQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVELEDWKRHSQDLIIKVKGIDDRDAANLLTNCEIVVDSEQLPPLEGDDYYWKDLMGCQVVTTSGYELGKVIDMMETGSNDVMVVRANLKDAFGMKERLVPFLHGQVIKKVDLAAKIIEAEWDPGF
>NZ_CP040182.1|WP_021182185.1|1319198_1319942_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MFIGIVSLFPEMFRAITDYGVTSRAVKNGLLSVQCWSPRDFTYDRHRTVDDRPYGGGPGMLMMVQPLREAIHAAKAAAGEGAKVIYLSPQGRKLDQTGVRELAANQKMILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHQASAEEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLESLALTDEQEVLLAEFQREHRAK
>NZ_CP040182.1|WP_024485183.1|1320019_1320376_+|50S-ribosomal-protein-L19
MSNIIKQIEQEQMKQDVPAFRPGDSVEVKVWVVEGTKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVIDSITVKRRGAVRQAKLYYLRERTGKSARIKERLNRVN
>NZ_CP040182.1|WP_021182189.1|1320437_1320656_-|DNA-binding-transcriptional-regulator
MMHCPLCGSVAHTRSSRYLSESTKERYHQCRNINCSCTFATHESVARVIVSPGDIIPAQPHPQESKQRAAAM
>NZ_CP040182.1|WP_071682367.1|1320713_1321268_-|lysozyme
MSSIVKRCSALAILAIAMLLPQANQIKTSEQGLYLIADFEGCQLTPYQCAAGVWTQGVGHTAGVIPGKSITPVQAAENLLEDIRRVESRMAACLPQQMPQATYDAVMAFAFNVGTGAACRSTLVYFLHHGQWQQACDQLPRWIYVNGVKNRGLERRRAAERELCLKGLSTPNTTSFPGKEQLAQ
>NZ_CP040182.1|WP_021808134.1|1321251_1321470_-|hypothetical-protein
MERLTSFITYSAALFLAWLGKLSPQDVAFLIGAAVGIGTFLVNWYYRRKSLEILKSIERDAAARRLFDELNR

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Crispr_ID: NZ_CP040182_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_2

1576470-1576586

Orphan

Consensus_repeat	Method
CACTAGCTCCCTCTCCCTGTGGGAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040182_2

>merge|NZ_CP040182|2|1576470-1576586|CRISPRCasFinder
CACTAGCTCCCTCTCCCTGTGGGAGAGGGCTGGGGTGAGGGGCTCTTGCAATTACTACAGATTAACTCCGTTCCCAATTCCGGCTCTGCACTAGCTCCCTCTCCCTATGGGAGAGGG

>NZ_CP040182|2|2|1576470-1576586|CRISPRCasFinder
CACTAGCTCCCTCTCCCTGTGGGAGAGGG	CTGGGGTGAGGGGCTCTTGCAATTACTACAGATTAACTCCGTTCCCAATTCCGGCTCTG
CACTAGCTCCCTCTCCCTATGGGAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_024528386.1\|1580265_1581315_-\|PLP-dependent-cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|223110
NZ_CP040182.1\|WP_059200022.1\|1586175_1587462_+\|ammonium-transporter-AmtB	unknown	unknown	gnl\|CDD\|182630
NZ_CP040182.1\|WP_004954599.1\|1572627_1572900_+\|DNA-binding-protein-HU-beta	unknown	unknown	gnl\|CDD\|259853
NZ_CP040182.1\|WP_071683013.1\|1570055_1572410_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|182730
NZ_CP040182.1\|WP_021180167.1\|1567759_1568383_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP040182.1\|WP_071683012.1\|1573070_1574951_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NZ_CP040182.1\|WP_024528383.1\|1576657_1577356_-\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|182967
NZ_CP040182.1\|WP_021180156.1\|1581437_1581899_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP040182.1\|WP_071683010.1\|1577519_1579226_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226909
NZ_CP040182.1\|WP_024483947.1\|1575735_1576149_+\|YbgC/FadM-family-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|129161
NZ_CP040182.1\|WP_021805484.1\|1565354_1565669_+\|transcriptional-regulator-BolA	unknown	unknown	gnl\|CDD\|183243
NZ_CP040182.1\|WP_071683008.1\|1581979_1583755_+\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182732
NZ_CP040182.1\|WP_021805483.1\|1566033_1567338_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP040182.1\|WP_071683009.1\|1579357_1580179_+\|HMP-PP-phosphatase	unknown	unknown	gnl\|CDD\|185080
NZ_CP040182.1\|WP_021180166.1\|1568590_1569862_+\|ATP-dependent-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP040182.1\|WP_021805471.1\|1587515_1588379_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|182519
NZ_CP040182.1\|WP_021180171.1\|1564422_1565001_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183242
NZ_CP040182.1\|WP_071683011.1\|1575161_1575539_+\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
NZ_CP040182.1\|WP_004949337.1\|1585799_1586138_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|182629
NZ_CP040182.1\|WP_071683007.1\|1583747_1585526_+\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182733

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_024528386.1\|1580265_1581315_-\|PLP-dependent-cysteine-synthase-family-protein	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	5.47673e-107
NZ_CP040182.1\|WP_059200022.1\|1586175_1587462_+\|ammonium-transporter-AmtB	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	0
NZ_CP040182.1\|WP_004954599.1\|1572627_1572900_+\|DNA-binding-protein-HU-beta	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.65761e-42
NZ_CP040182.1\|WP_071683013.1\|1570055_1572410_+\|endopeptidase-La	gnl\|CDD\|182730	PRK10787, PRK10787, DNA-binding ATP-dependent protease La; Provisional.	0
NZ_CP040182.1\|WP_021180167.1\|1567759_1568383_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	9.45305e-161
NZ_CP040182.1\|WP_071683012.1\|1573070_1574951_+\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	0
NZ_CP040182.1\|WP_024528383.1\|1576657_1577356_-\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|182967	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional.	0
NZ_CP040182.1\|WP_021180156.1\|1581437_1581899_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.68858e-51
NZ_CP040182.1\|WP_071683010.1\|1577519_1579226_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	1.44738e-179
NZ_CP040182.1\|WP_024483947.1\|1575735_1576149_+\|YbgC/FadM-family-acyl-CoA-thioesterase	gnl\|CDD\|129161	TIGR00051, Acyl-CoA_thioesterase_YbgC, acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon. [Unknown function, General].	6.68782e-41
NZ_CP040182.1\|WP_021805484.1\|1565354_1565669_+\|transcriptional-regulator-BolA	gnl\|CDD\|183243	PRK11628, PRK11628, transcriptional regulator BolA; Provisional.	5.04837e-74
NZ_CP040182.1\|WP_071683008.1\|1581979_1583755_+\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	0
NZ_CP040182.1\|WP_021805483.1\|1566033_1567338_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	0
NZ_CP040182.1\|WP_071683009.1\|1579357_1580179_+\|HMP-PP-phosphatase	gnl\|CDD\|185080	PRK15126, PRK15126, HMP-PP phosphatase.	2.91536e-180
NZ_CP040182.1\|WP_021180166.1\|1568590_1569862_+\|ATP-dependent-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP040182.1\|WP_021805471.1\|1587515_1588379_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|182519	PRK10526, PRK10526, acyl-CoA thioesterase II; Provisional.	0
NZ_CP040182.1\|WP_021180171.1\|1564422_1565001_-\|hypothetical-protein	gnl\|CDD\|183242	PRK11627, PRK11627, hypothetical protein; Provisional.	5.83777e-131
NZ_CP040182.1\|WP_071683011.1\|1575161_1575539_+\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	4.38386e-22
NZ_CP040182.1\|WP_004949337.1\|1585799_1586138_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|182629	PRK10665, PRK10665, P-II family nitrogen regulator.	2.56997e-66
NZ_CP040182.1\|WP_071683007.1\|1583747_1585526_+\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182733	PRK10790, PRK10790, SmdB family multidrug efflux ABC transporter permease/ATP-binding protein.	0

>NZ_CP040182.1|WP_024483947.1|1575735_1576149_+|YbgC/FadM-family-acyl-CoA-thioesterase
MQTYIKVRGYHLDVYQHVNNARYLEFLEEARWEWLEDLDAFHWMTQNNIAFIVVNININYRKPAVLGDKLRIDSQMLQLNGKSGVLSQQVLLEPEGTVVADATLTFVCIDLKTQRALPIEGALREHLVALQQKDAEA
>NZ_CP040182.1|WP_071683011.1|1575161_1575539_+|ComEA-family-DNA-binding-protein
MQLSENKAIIRFTVIRQLLLAAALFGLIGSSAIAAEKPSQGQPQAAVVSPKVSPEAPGEGEAKVSINQADAEALATVLNGVGLKKAEAIVRYREQNGPFSEIDQLQEVPGIGPSLVERNRDRLKM
>NZ_CP040182.1|WP_071683012.1|1573070_1574951_+|peptidylprolyl-isomerase
MMDNLRAAANHVVLKIILGLIILSFLLTGVVSYQGSAGDYAAKVNGQVIERAQLEQAFQSERSRMQQELGDRFSAMAGNEGYMQQMRQQVLSQLIDKSLLDQYAKTLGLSASDDQVKEAIRQESYFQTDGKFDNAKYLDLITRSGFSADQYAQYTRQRLINQQMIQGFGGSDIVPPSEAQSMVALVLQERDVRLATIDLNAMMAKQTVTDEELKAFFEQNKNSFIAPEKVKVSFIPLDAAALKDTVTVTEADISAYYDGHQSSFGQPERKKFSVIQLKTEADAKAVLEELKNGGDFAALAKEKSTDIISRRTGGEMDWMEPDTTADELKQANLTEKGQLSGVVKSSVGYLIVRLDDIKPALVKPLSEVHDAIAKQLKQEKAVDAYYALQQKVSEAATSDNESLASAEEAAGIKAANTEWFTRDSVPAALNFKPVVQAIFDGSLIGENGAPGSNSDVITVDGDRAFVVRVVAHQPEGIEPFDKVKDRVTAMVKHNKALQEAKLQGEKLLVELKQGKGDEAMKAAGLSFGSVQKMARAPEDSQLVEAVFALPHPEAGKVVYGMSQDAQGNVVLIALDSVKPGTLPADEMKTFVSNMEKGSASVTFDALLTNLRKEAKIKMGAAEQQQP
>NZ_CP040182.1|WP_004954599.1|1572627_1572900_+|DNA-binding-protein-HU-beta
MNKSQLIDKIAAGADISKAAAGRALDAIIASVTDSLKEGDDVALVGFGSFTVRERSARTGRNPQTGKEIKIAAAKVPAFRAGKALKDAVN
>NZ_CP040182.1|WP_071683013.1|1570055_1572410_+|endopeptidase-La
MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGINDLFSVGTVASILQMLKLPDGTVKVLVEGLQRARITTLSDSGEHFAAQAEYLESPAIDEREQEVLVRTAINQFEGYIKLNKKIPPEVLTSLNSIDDAARLADTIAAHMPLKLSDKQSVLEMFDITERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDTPDEHEALKRKIEAAKMPKEAREKTEAELQKLKMMSPMSAEATVVRGYIDWMIQVPWNARSKVKKDLLKAQEVLDTDHYGLERVKDRILEYLAVQSRVSKIKGPILCLVGPPGVGKTSLGQSIARATGRQYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKQHLLPKQLERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKSLLMDNKLKHIEINGENLKDYLGVQRVDYGRADTENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINADFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGHVLPIGGLKEKLLAAHRGGIKTVLIPYENKRDLEEIPDNVIADLEIHPVQRIDEVLNIALVNPAFGAQPVAVK
>NZ_CP040182.1|WP_021180166.1|1568590_1569862_+|ATP-dependent-protease-ATP-binding-subunit-ClpX
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERNSLPTPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLIKFGLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFREEALNAIAKKAMTRKTGARGLRSIVEGALLDTMYDLPSLESVDKVVIDESVIAGQSKPLLIYGKPEAQASGE
>NZ_CP040182.1|WP_021180167.1|1567759_1568383_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSYSGERDQFAPNMALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQSLEQIERDTERDRFMTAEESVEYGLVDSILTHRS
>NZ_CP040182.1|WP_021805483.1|1566033_1567338_+|trigger-factor
MQVSVETTQGLGRRLSITVPADVINQAVKKELINAAKSVRIDGFRKGKVPMNIVEQRYGASVRQDVLGDLMQRNFVDAIIKEKINPAGAPNYVPGEYKEGEDFAFTVEFEVYPEVELKGLESIEVEKPVVEVNDADVDTMLETLRKQQATWKDTDGAATAEDRVTVDFTGSIDGEEFEGGKAADFVLAMGQGRMIPGFEEGLVGHKAGEEFTIDVNFPEDYHAENLKGKAAKFAIVLKKVEQRELPELTEEFIKRFGVADGSLAGLRTEVRKNMERELKGAVRNRIKTQAIDGLVNANEIDVPAALIDGEVDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVISTNDLKADEERVKTLIEEMASAYEDPSEVVEFYSKNKELMNNMRNVALEEQAVEALLAKAKVTEKATTFSELMNQTQQA
>NZ_CP040182.1|WP_021805484.1|1565354_1565669_+|transcriptional-regulator-BolA
MIREQIEAKLRAAFEPAYLEVTDESYRHNVPAGSESHFKVVLVSDRFVGERFLTRHRSIYGVLAEELENGVHALALHTYTLKEWEGLQDTVPASPPCRGAGTLA
>NZ_CP040182.1|WP_021180171.1|1564422_1565001_-|hypothetical-protein
MLKKLCLPLLAALLLAGCATSTNTLNVTPKIVLPQQDPTLQGITISINGADQRPDQALAKVNRDGQLITLTPSRDLRFLLQEVLEKQMGARGYMIGPSGAVDLQIVVNTLFADVSQGNLRYNITTKADISIIAQAKNGNKQVKNYRSTYNVQGAFTASNEKITDAVNTVLGDVIADMAQDTSVNDFIKQNAR
>NZ_CP040182.1|WP_024528383.1|1576657_1577356_-|7-cyano-7-deazaguanine-synthase-QueC
MKRAVVVFSGGQDSTTCLIQALQQYDEVHCITFDYGQRHRAEIEVAQALCQTLGAKAHKVLDVGLLNELAISSLTRDNIPVPTYDSSQTDALPSTFVPGRNILFLTLAAIYAYQVEAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNKAETWALADYYQQLERIRHETLTCYNGVQGDGCGECAACHLRANGLQQYQQDKVGVMASLKRKTGLV
>NZ_CP040182.1|WP_071683010.1|1577519_1579226_-|peptide-ABC-transporter-substrate-binding-protein
MRLVHRLGQYQRLYHQLGSAPVAITIGELAAIFYCSERHARTLVQQLQQQGWLSWQSQAGRGKRAQLQCLKTPDELRTAHLQRLLQLGDHQGALEMAQLAPQHLQELLSPHLGGQWQEGSPTLRIPYYRTLEKLDPLTLSGRAEQHLVATVYAGLTRFNTGCPEPQPDLAHHWQISEDGLRWQFFLRSQLRWHNGEALTGQQLLQTLNTLQHHPRSQPLLSSVAAISLPHALCVQFDLQMPDYWLAHRLAELPCLMTHPELPSLGAGPFKLALNEPHMVRLELHPYYHLQHPYLESIEYWITPELPTRSTDTSCQHPVRITIGQQEELAQARPVQRSMSQGWCYLAINQRRGVLSEAQGQKLLMLIQRSGLLASLPIQQGVIMPSHEMLPGWAIPEHDVRQDVELPPRLTLLYHPPIELESVTQALQQLLAEHGCQLEVRYYSGKRWQSTEQVAQADLLLADNLIGEAPEATLESWLRRDLLWQGILREKDWQYQQRTLQQIQQCPAPLQRYSQLKAYYQQLMGAAILTPLFNYQYQVSAPPRIQGVMLTAYGWFDFCQAWLPPPLDD
>NZ_CP040182.1|WP_071683009.1|1579357_1580179_+|HMP-PP-phosphatase
MYRLAAFDMDGTLLTPDHRVGPETLSALKQLIDREMVVTFATGRHYLDAQPIMAQLGLQGYLITGNGTRVYDQQGQQLHATDLPAEIAEEVLHTHWRTSASMHVFRDEGWLTETAVPEMLAAHHLSGFHFQLTDFRRLSAFGNSKVCFCAPHEELVKLQAQLSEHFGTRADLCFSAYDCLEVLPKGCNKGAALDRLSRHLGLTLADCMAFGDAMNDKEMLAGVGHGVVMGNALPQLKSLLPQLQVIGHCEQQAVAHYLQHWLRSPHLTYSPEF
>NZ_CP040182.1|WP_024528386.1|1580265_1581315_-|PLP-dependent-cysteine-synthase-family-protein
MTNAWVKYAIGEIEADFQRSADTHLIRLNLPEFPGIYLYLKDESTHPTGSLKHRLARSLFLYGLCNGWINQNTPIIEASSGSTAVSEAYFARLLGLPFIAVMPSCTAKRKVEQIAFYGGRSHFVDHAAQIYAVSEELAKELNGHYMDQFTFAERATDWRGNNNIADSIFRQMEREPHPVPKHIVMSAGTGGTSATLGRYIRYQGHDTQLTVVDPENSVFYDCFHHGDRTIIGSCGSRIEGIGRPRAEPSFIPSVIDNMLRVPDAASIATIYWLENILGRKVGASTGTNVWGALQLAKQMRDKGEQGAIVTLLCDSGERYLDTYYNSDWVSNHIGDLTPYSAQLANLSGK
>NZ_CP040182.1|WP_021180156.1|1581437_1581899_+|Lrp/AsnC-family-transcriptional-regulator
MLDKTDRKLLCMLQQDCTQSLQVLAEAVNLTSTPCWKRLKRLEDEGYIRARVALLDNEKLGLGLTAFVLIKTQQHSSEWYQKFVDLTAQMPEVLAFYRMAGEYDYLMQVEVADMKSYDNFYKRLVTGVPGLIDVTSSFAMEKIKYTTALPVPE
>NZ_CP040182.1|WP_071683008.1|1581979_1583755_+|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein
MRLFAQIGWYFRREWRRYLGAVVLLIAIAILQLLPPKLVGIIVDGVTKDQMSNKVLMAWLGLMIGTAIVVYLLRYVWRVLLFGASYQLAVELRENFYRQLSRQNPAFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGLAVLIVMSTQISWQLTLLSLIPMPIMAIVIKYYGDQLHQRFKSAQAAFSSLNDQAQESMTSIRMIKAFGLEDHQSNQFAEVAAQTGAKNMHVARIDARFDPTIYIAIGAANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRSLLEEAPAVKDGQLDLPAGRGNLSVEINAFHYPQTNKPALHDVALQLQPGQMLGLCGPTGSGKSTLLSLIQRQFDIDDGHISYHGLPLTQIKLDEWRSRLSVVSQTPFLFSDSVANNIALGNPAATQEQIEQAARLASVHEDILRLPQGYETEVGERGVMLSGGQKQRISIARALLLEAEILILDDALSAVDGRTEHQILHNLRSWGQNRTVIISAHRLSALTEASEILVMQHGSVIQRGQHGKLASEPGWYRDMHRYQQLEAALDEAPDGSEEVLADE
>NZ_CP040182.1|WP_071683007.1|1583747_1585526_+|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein
MSKIQTMWPTLKRLLAYGSPYRKPLGLAVLMLWVAAAAEVAGPILIGYFIDNYVAKGQLPLMIVSSLAVAYILLELLAAALHYFQAILFNRVAVGVVQRLRIDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIKDLYVMVVSTVLKSAALIGAMLVAMFSLDWRMALVAICIFPAVMVVMGIYQYYSTPIVRRMRSYLADINDGFNEVISGMGVIQQFRQQIRFGERMSAASRSHYTARMQTLRLDGFLLRPLLSLFSALVLCGLLMLFGFSGEGAIGVGVLYAFINYLGRLNEPLIELTAQQSILQQAVVAGERIFELMDRSQQSYGSDDRPLASGRIDISDLSFAYRSDKKVLQHISLQVPSRGFVALVGHTGSGKSTLANLLMGYYPLSEGEIRLDGRPLSSLSHRTLRQGIAMVQQDPVVMAESVLANVTLGRSIGEEAVWQALETVQLGELVRSFPQGIHTRLGEQGNNLSVGQKQLLALARVLVQAPQILILDEATANIDSGTEQAIQRALRLIREQTTLVVIAHRLSTIVDADSILVLHRGHAVEQGNHQQLLAQQGRYYQMYQLQLVGEELAATTRDETQPA
>NZ_CP040182.1|WP_004949337.1|1585799_1586138_+|P-II-family-nitrogen-regulator
MKLVTVVIKPFKLEDVREALSSVGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDIAIADDQLDEVVDVISKAAYTGKIGDGKIFVAELQRVIRIRTGETDEAAL
>NZ_CP040182.1|WP_059200022.1|1586175_1587462_+|ammonium-transporter-AmtB
MKRLLSTLGLSLVTLVPSLALAAPAVADKADNAFMMICTALVLFMTLPGVALFYGGLLRSKNVLSMLTQVTVTFALVCVLWVIYGYSLAFSEGNAFFGGFQTVMLKGIGIDSLTGTFSQMIHVAFQCSFACITVALVVGGFAERIRFSAVVIFAAIWFTISYLPIAHMVWGGGFLAADGALDFAGGTVVHINAASAGLVGAYLLGKRAGYGKEAFKPHNLPMVFTGASILYIGWFGFNAGSASAANGIAALAFLNTVIATAGAILSWTFAEWVVRGKPSLLGACSGCIAGLVAITPAAGTVGVGGALIIGLVGGIAGLWGVVTLKKWLKVDDTCDVFGVHGVCGIVGCLLTGVFTASSLGGTGYADGVTMGHQVWVQLMSVVVTLVWSSVAAFIAFKVAGAVVGLRVPEEQEREGLDVNSHGENAYNQ
>NZ_CP040182.1|WP_021805471.1|1587515_1588379_-|acyl-CoA-thioesterase-II
MSQALHNLLELLDLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKQTVPAERIVHSFHSYFLRPGDSSKPIVYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSPEQGFEHQNTMPDVPPPEGLMSESEIAQKLSHMLPEKVRDKFIGPKPIEMRPVKFHNPLKGSVEEPYRHVWFRANGTMPDDLRIHQYLLGYASDFHFLLTALQPHGVGFLEPGMQVATIDHSMWFHRPFRMDDWLLYAVESTSASGARGFVRGQFYTRDGVLVATTVQEGVIRKRDI

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Crispr_ID: NZ_CP040182_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_3

2102425-2102567

Orphan

Consensus_repeat	Method
TCCCACAGGGAGAGGGAGCAGATGGGTGTTGTGAGCAGATACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040182_3

>merge|NZ_CP040182|3|2102425-2102567|CRISPRCasFinder
TCCCACAGGGAGAGGGAGCAGATGGGTGTTGTGAGCAGATACAGGCGTTAATTTATGGGACTGTTCCTAACAACAGAACTTAATCAGTAGCACCTTCTGTCCCACAGGGAGAGGGAGCAGATGGGGGTTGTGAGCAGATACAG

>NZ_CP040182|3|3|2102425-2102567|CRISPRCasFinder
TCCCACAGGGAGAGGGAGCAGATGGGTGTTGTGAGCAGATACAG	GCGTTAATTTATGGGACTGTTCCTAACAACAGAACTTAATCAGTAGCACCTTCTG
TCCCACAGGGAGAGGGAGCAGATGGGGGTTGTGAGCAGATACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_071682541.1\|2098967_2100845_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182342
NZ_CP040182.1\|WP_071682539.1\|2097111_2097648_+\|DUF924-domain-containing-protein	unknown	unknown	gnl\|CDD\|377592
NZ_CP040182.1\|WP_071682543.1\|2102736_2103657_+\|glutathione-ABC-transporter-permease-GsiC	unknown	unknown	gnl\|CDD\|185039
NZ_CP040182.1\|WP_071682537.1\|2095001_2095763_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP040182.1\|WP_071682535.1\|2092204_2093797_+\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP040182.1\|WP_071682533.1\|2090369_2091023_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NZ_CP040182.1\|WP_071682536.1\|2094031_2094715_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP040182.1\|WP_071682547.1\|2107910_2109068_+\|YbfB/YjiJ-family-MFS-transporter	unknown	unknown	gnl\|CDD\|284247
NZ_CP040182.1\|WP_021180574.1\|2109382_2110048_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP040182.1\|WP_021180577.1\|2112721_2113714_+\|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB	unknown	unknown	gnl\|CDD\|185293
NZ_CP040182.1\|WP_071682546.1\|2106902_2107805_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176133
NZ_CP040182.1\|WP_071682540.1\|2097988_2098948_+\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|182319
NZ_CP040182.1\|WP_071682557.1\|2110115_2111297_+\|DUF418-family-protein	unknown	unknown	gnl\|CDD\|182766
NZ_CP040182.1\|WP_071682548.1\|2111426_2112464_+\|HTH-type-transcriptional-regulator-GalS	unknown	unknown	gnl\|CDD\|236681
NZ_CP040182.1\|WP_071682544.1\|2104880_2105723_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NZ_CP040182.1\|WP_071682545.1\|2105738_2106863_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP040182.1\|WP_071682542.1\|2100870_2102406_+\|glutathione-ABC-transporter-substrate-binding-protein-GsiB	unknown	unknown	gnl\|CDD\|185311
NZ_CP040182.1\|WP_071682534.1\|2091141_2092029_+\|transcriptional-regulator-CynR	unknown	unknown	gnl\|CDD\|183051
NZ_CP040182.1\|WP_071682538.1\|2095765_2097004_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP040182.1\|WP_024485755.1\|2103669_2104575_+\|glutathione-ABC-transporter-permease-GsiD	unknown	unknown	gnl\|CDD\|185040

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_071682541.1\|2098967_2100845_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	0
NZ_CP040182.1\|WP_071682539.1\|2097111_2097648_+\|DUF924-domain-containing-protein	gnl\|CDD\|377592	pfam06041, DUF924, Bacterial protein of unknown function (DUF924). This family consists of several hypothetical bacterial proteins of unknown function. Structurally, this family resembles TPR-like repeats.	4.92055e-88
NZ_CP040182.1\|WP_071682543.1\|2102736_2103657_+\|glutathione-ABC-transporter-permease-GsiC	gnl\|CDD\|185039	PRK15081, PRK15081, glutathione ABC transporter permease GsiC; Provisional.	0
NZ_CP040182.1\|WP_071682537.1\|2095001_2095763_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	3.0206e-173
NZ_CP040182.1\|WP_071682535.1\|2092204_2093797_+\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP040182.1\|WP_071682533.1\|2090369_2091023_-\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	4.49018e-93
NZ_CP040182.1\|WP_071682536.1\|2094031_2094715_-\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	4.40791e-16
NZ_CP040182.1\|WP_071682547.1\|2107910_2109068_+\|YbfB/YjiJ-family-MFS-transporter	gnl\|CDD\|284247	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB. This family represents putative bacterial membrane proteins which may be sugar transporters. Members carry twelve transmembrane regions which are characteristic of members of the major facilitator sugar-transporter superfamily.	6.55015e-71
NZ_CP040182.1\|WP_021180574.1\|2109382_2110048_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	3.93989e-104
NZ_CP040182.1\|WP_021180577.1\|2112721_2113714_+\|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB	gnl\|CDD\|185293	PRK15395, PRK15395, galactose/glucose ABC transporter substrate-binding protein MglB.	0
NZ_CP040182.1\|WP_071682546.1\|2106902_2107805_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176133	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.80947e-83
NZ_CP040182.1\|WP_071682540.1\|2097988_2098948_+\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|182319	PRK10226, PRK10226, isoaspartyl peptidase; Provisional.	3.65892e-155
NZ_CP040182.1\|WP_071682557.1\|2110115_2111297_+\|DUF418-family-protein	gnl\|CDD\|182766	PRK10835, PRK10835, hypothetical protein; Provisional.	0
NZ_CP040182.1\|WP_071682548.1\|2111426_2112464_+\|HTH-type-transcriptional-regulator-GalS	gnl\|CDD\|236681	PRK10401, PRK10401, HTH-type transcriptional regulator GalS.	0
NZ_CP040182.1\|WP_071682544.1\|2104880_2105723_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	3.26966e-132
NZ_CP040182.1\|WP_071682545.1\|2105738_2106863_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP040182.1\|WP_071682542.1\|2100870_2102406_+\|glutathione-ABC-transporter-substrate-binding-protein-GsiB	gnl\|CDD\|185311	PRK15413, PRK15413, glutathione ABC transporter substrate-binding protein GsiB; Provisional.	0
NZ_CP040182.1\|WP_071682534.1\|2091141_2092029_+\|transcriptional-regulator-CynR	gnl\|CDD\|183051	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional.	1.3348e-168
NZ_CP040182.1\|WP_071682538.1\|2095765_2097004_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP040182.1\|WP_024485755.1\|2103669_2104575_+\|glutathione-ABC-transporter-permease-GsiD	gnl\|CDD\|185040	PRK15082, PRK15082, glutathione ABC transporter permease GsiD; Provisional.	0

>NZ_CP040182.1|WP_071682542.1|2100870_2102406_+|glutathione-ABC-transporter-substrate-binding-protein-GsiB
MTKHTFKRNVLAAVLLAAAAGPAWAAKDAVIAVASNFTTLDPYDANDTLSQAVAKSFYQGLFGFDKDMKLVNVLADSYEVSKDGLTYTIKLQPGVKFHDGSAFDAEAVKVNLDRASNPDNRLKRYNLFKMIDKTEVVDPTTVKIVLKAPFSAFINNLAHPAAAMISPAALKQYGKEIGFHPVGTGPYQFETWNQTDYVKVKKFDGYWKAGLPKLDSITWRPVVDNNTRAAMLQTGEATFAFPIPYEQAKVLEKNSKLDLVAAPSILQRYISMNVTQKPFDNPKVRQALNYAINKDALIKVAFSGFAVPAEGPVPPAIDFATLYNAWPYDPAKARELLKEAGYPNGFTTTLWSSHNHSTAQKVLQFAQQQLAQVGVKVTVTAMDAGQRAAQVESVGVKDTGVRMFYTGWSASTGEADWALTPLFATQSAPPKQFNTAFYSNPQVDKDLAEALATTDRAQKQALYKDAQDRIWADAPWIFLVTERLLSANNKQLSGFYVMPDTSFNFDNADLK
>NZ_CP040182.1|WP_071682541.1|2098967_2100845_+|dipeptide-ABC-transporter-ATP-binding-protein
MTDTAIQPQVERGLILPPERVLAVSDLCVQFRQEGDVIEAVRHLDFDVDRGETLAIVGESGSGKSVTSLALMRLVEQGGGELTSGVMHFRRRNGQVLDLAKAKQSTLRTLRGADMAMIFQEPMTSLNPVFPVGEQIAESLRLHQGMDHRGAKREALRMLDLVRIPEAKNVLGRYPHQLSGGMRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRVLQQEMQMGVIFITHDMGVVAEIADRVLVMHQGEKVEQGAVRALFAAPQQPYTQALLAAVPQLGAMADKDFPAKFPLAGVDDNDQPQDTIPAGATPILQVENLVTRFDLRSGILNRVTRRVHAVENISFDLYPGETLGLVGESGCGKSTTGRSLLKLVDSQRGTITFNGQQINRLKGSALQHLRRDIQFIFQDPYASLDPRLTVGFSIMEPLLVHNVARGTEAEKRVAWLLERVGLKPEHARRYPHEFSGGQRQRICIARALALNPKVVIADEAVSALDVSIQAQIVNLLLDLQRELGIAFLFISHDMAVVERVCHRVAVMYLGQIVEIGPRRAVFENPQHAYTRKLMAAVPVADPTHAHKRQPLLVDEIPSPIRGLHDEPVTAPLVQVGPGHFVARHPIAGAF
>NZ_CP040182.1|WP_071682540.1|2097988_2098948_+|isoaspartyl-peptidase/L-asparaginase
MSKPVIAIHGGAGAITRAALSAEKEQDYIRALSDIVAAGQAILAAGGSALDAVTEAVRLLEECPLFNAGKGAVFTHQGTHELDACVMDGRTCDAGAVAGVSRIRNPVLAARAVLENSTHVLFGGEGAERFAANHGLEMVEPDFFFTQERFDQLHRAQAEQGRVLLDHDGAAALSGDPLDPDRKFGTVGAVALDALGNLAAATSTGGMTNKAAGRIGDTPIIGAGCYANNATVAVSSTGTGEIFMRTVAAYDVSALIEYAGLTLQQACDKVVMEKLLALGGSGGLIAIDRFGNVALPFNSEGMYRGFGYVGDAPSVGIYR
>NZ_CP040182.1|WP_071682539.1|2097111_2097648_+|DUF924-domain-containing-protein
MHQQVLDFWFEEIDPAMWFKKEDEFDRLLHTRFGQLWQAASQGELAHWRTTIKGRLAEIIVLDQFSRNLFRNTPRSFACDGMALVLAQEAIATGLCENLTVEQRGFLYLPFMHSESALILQQALELFRQLNNGDQLEFEIRHKAIIDRFGRYPHRNEILGRKSTFEEQEFLQQPGSGF
>NZ_CP040182.1|WP_071682538.1|2095765_2097004_-|molybdopterin-molybdotransferase-MoeA
MDHCHTSDLISLEQALEKMLSQIAPLQQSESIALTSAAGRITATPVVSPIDVPPFANSAMDGYAVRLSDLNGNSSLPVAGKAFAGAPFTDAWPANTCVRIMTGAPIPAGADAVIMQEQAEVTEAGVRFNAPVTAGQNIRLAGEDILRGASVLPAGITLGAAQLPLLASLGVADVQVMRKLKVAVFSTGDELQPVGQPLQAGQIYDTNRFAVRLMLEQLGCTVIDLGIIRDNQEALRAAFIQADSEADVVISSGGVSVGEADYTKQMLDELGKVSFWKLAIKPGKPFAFGKLQHAWFCGLPGNPVSAALTFYQLVQPLLAKLAGHTEWQLPPRLKARALTPLKKSPGRLDFQRGIFTSNAQGELEVSTTGHQGSHVFSSFSQGNCFIVLERERGSVAAGEMVEIEPFNALLRN
>NZ_CP040182.1|WP_071682537.1|2095001_2095763_-|molybdopterin-synthase-adenylyltransferase-MoeB
MLPELTDAQALRYNRQIVLRGFDFEGQEKLQAAHVLIVGLGGLGCAAAPYLAAAGVGHLTLVDFDTVSLSNLQRQILHRDDRIGMAKVESARIELGSINPHIRIDTLDTQLGDEQMAEQIAACDVVLDCTDNVATRDLLNRLCHAQRKPLVSGAAIRMEGQLSVFTYQPEQPCYRCLSRLFGENALTCVEAGVMAPLVGTIGTLQAMEAIKLLANYGQPLVGKLLMFDAMSMQFREMKLPKDPRCEVCSGNPL
>NZ_CP040182.1|WP_071682536.1|2094031_2094715_-|hypothetical-protein
MSSVNSPIEGTIMIAGTLYGGVAFSQNNQNVVCKSSPVNIVHCGDNAMVYDDVVSATGDVDFPNIRGRIATTGDNSYITGGNESLTSALGFSSSIMLGYLYPDAEQLTLTQAVAVTANTNGTIKTAGYVDNSVLMAAGDTSQIIDRGNNNVLFSSGVDNTIQSDGGTGAVIFTAKNPRYFTLNEQGVAAITWHDGIRTRVTVIYEGENGIEKGEMYRLDENGSVVAI
>NZ_CP040182.1|WP_071682535.1|2092204_2093797_+|ABC-F-family-ATPase
MLSTNNITMQFGSKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLAPSGGNVFLDPNERLGKLRQDQFAFEQFSVLDTVIMGHTELWAVKEERDRIYAMAEMSEEDGYKVADLEVAYGEMDGYTAEARAGELLLGVGIPVEQHYGPMSEIAPGFKLRVLLAQALFSDPEILLLDEPTNNLDIDTIRWLEQVLNERNSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLMSDNAKKKAQINELQSFVSRFSANASKSKQATSRARQIDKIQLEEVKASSRQNPFIRFEQDKKLFRNALEVEALAKGFDNSPLFSKLNLMVEVGEKVAILGANGIGKSTLLKTLVGDLQPDHGTVKWSENAKIGYYAQDHEYEFDETLSVFDWMSQWKQEKDDEQAVRSILGRLLFSQDDIKKRVKVLSGGEKGRMLFGKIMMQRPNILIMDEPTNHMDMESIESLNMALEMYEGTLIFVSHDREFVSSLATRVLEMTPNKVIDFTGNYEDYLRSQGIS
>NZ_CP040182.1|WP_071682534.1|2091141_2092029_+|transcriptional-regulator-CynR
MLLRHIRYFLAVAEQGNFTRAAEVLHVSQPTLSQQIKQLEETLQVELFDRSGRRVQLTDAGQAWMRYARLALQDLDAGKRAIQDVATLERGNLRLAMTPTFTSYLIGPLVDGFFRRYPGITLNIREMTQDKMEALLCDDQLDLGIAFEPVHSADIAATRLFTERLQLMVGKGHQLAKRRVALSVAEVQQVPLVLLNGDFATRHYVDEYCQQHAIYPQVAMEANAISAIAEIVRHGQLATILPQAIARSNPLLLPIKLSVPMPERHAVVLQRKEGYRSAASRAFIAMLQDQVKEMG
>NZ_CP040182.1|WP_071682533.1|2090369_2091023_-|carbonic-anhydrase
MQEVIDGFLKFQREAFVERTELFKRLATSQNPRTLFISCSDSRLVPELITQREPGDLFVIRNAGNIVPSFGPEPGGVSASVEYAVAALGVKDIVICGHSDCGAMTAIATCKCLDHMPTVANWLRYADAAKAVNQANEHASEHDRINSMVRENVIAQLTNLKTHPSVALALDRGNLRLHGWIYDIATGCIDALDGNTRRFVPLASNPSVTASPAMQRF
>NZ_CP040182.1|WP_071682543.1|2102736_2103657_+|glutathione-ABC-transporter-permease-GsiC
MLNYFLKRLLGLIPTLLIVAVLVFLFVHMLPGDPARLAAGPEADEAVVQLVRQDLGLDKPLPQQFVHFFVNILQGDFGTSMVSKRPVSEEIASRFMPTFWLTITSMVWAVIFGMAIGMISAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVNLGWLPTVGADTWQHYILPSITLGAAVAAVMARFTRASFVEVMQEDYMRTARAKGVPESLVVVKHGLRNAMIPVITMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLLVDMLYAAINPSIRYQ
>NZ_CP040182.1|WP_024485755.1|2103669_2104575_+|glutathione-ABC-transporter-permease-GsiD
MKYWRRNAALKAMPVINPNAVRTPWHEFWRRFRRQQVAMVAGVFVLLLVAAALLAPHLVPFDAENFFDYDRLNEGPSLVHWLGVDSLGRDIFSRILMGARISLAAGVFSVLVGSVIGTVLGLLAGYYEGWWDRIVMRISDVLFAFPGILLAIGVVAIMGSGMANVIVAVAIFSIPAFARLVRGNTLVLKHLTYIESARSIGASDWTIILRHILPGTISSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAIFPSLAIFFTVLAFNLLGDGLRDALDPKLKG
>NZ_CP040182.1|WP_071682544.1|2104880_2105723_-|S-formylglutathione-hydrolase
MTMSLELLEEHRMFGGWQQRYRHAAQSLNCNMTFSIYLPPPRDDNPPPVLYWLSGLTCNDENFTLKAGAQRVAAELGLVLVMADTSPRGDEVPNDEGYDLGQGAGFYLNATQAPWDQHFRMYDYISDELPALIRQHFSVSDRQSIAGHSMGGHGALMMAMRNPQRFRSASAFAPIVNPCQVPWGRKAFAAYLGDDETQWLQYDSCHLLASGAEQLPMLIDQGDGDQFLADQLQPAKLAELARQRDWPLTLRIQPGYDHSYFTIATFIEDHLRFHAEHLFK
>NZ_CP040182.1|WP_071682545.1|2105738_2106863_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MEFIKTRAAVAWGPNQPLKIEEVDLMPPQKGEVLVRIVATGVCHTDAYTLSGKDPEGVFPAILGHEGGGIVEAIGEGVTSVAVGDHVIPLYTPECGECKFCKSGKTNLCQAIRSTQGKGLMPDGTTRFFKDGKPIFHYMGTSTFAERTVVPEISLAKISKEAPLEEVCLLGCGVTTGMGAVINTAKVKAGDTVAIFGLGGIGLSAIIGAQMAGASRIIGIDLNTSKFDLARKLGATDLINPKDYDKPIQDVIVELTDGGVDFSFECIGNVNVMRSALECCHKGWGESVIIGVAGAGEEIATRPFQLVTGRVWRGSAFGGVKGRSQLPGIVQRYLDGEFALNDFITHTMGLEQINEAFDLMHEGKSIRSVIHFDK
>NZ_CP040182.1|WP_071682546.1|2106902_2107805_-|LysR-family-transcriptional-regulator
MDLTQLRMFCCVAETGSVARAAEQLHRVPSNLTTRLRQLEQELGTDLFIREKQRLRLSPMGHNFLCYAHRILALSEEAMSITHAGEPAGNFALGSMESTAATRLPTLLAAYHQRFPQVSLSLATGTSGEIIERVRAGTLAAALVDGPLQHDELNGCVAFPERMVVITCLDHPPIHSAQDVKGETLFAFRASCSYRLRLESWFKRDGSLPGTIMEIQSYHSMLACVASGAGLAMIPYSVLNLLPGYKRVKVHSLPADIAETATWLLWRRDAFGPNVRALKQLIIEQAESSEVDAESILLTE
>NZ_CP040182.1|WP_071682547.1|2107910_2109068_+|YbfB/YjiJ-family-MFS-transporter
MALKIALSGFIALIVAMGIGRFAFTPQVPLMIAEHQFTLTGAGLVAALNYLGYLCGAYDAMRASRHVERRLWLGVWGAVALTLLSALVSGEWLHGAVRFAIGWASGWSMVLVAAWTNERLAHYGRPALSAAVFAGPGAGIFISGMLAVAINSWGLSASQAWLVYGALALVLIVAISINLPRAGELHRPDVKPEPLVLTPALKRLVWSYSLAGFGYILPATFLSQMAAARFPDSLFAQFVWPIFGGAAVLGIIIGIATRHRLTTQTRLAITLWVQALGVLCAEVVPGVTGLALGAMLTGGGFLSVVQLSIQHGRELAPNHARYMAGLLTTGYAIGQLVGPMLSAVSTALTHRLEPALYVAVLGLLIAGVLVINTPARAMASKPRLS
>NZ_CP040182.1|WP_021180574.1|2109382_2110048_+|GTP-cyclohydrolase-I-FolE
MTSLSNEAALVHAALEARGLETPLCGEVLDRETRKRRIKEHMTEIMQLLNLDLSDDSLAETPHRIAKMYVDEIFSGLDYANFPKITVIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFARRPQVQERLTQQILVALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAVRHHHG
>NZ_CP040182.1|WP_071682557.1|2110115_2111297_+|DUF418-family-protein
MNANETPRLPRIATLDCVRGIAILGILLLNISAFGLPKAAYLNPAYLGMPSTRDVWTWALLDLFAQVKFLAMFALLFGAGLQLLLRRGKVWIRARLSWLVLIGLGHAIFLWDGDILLAYGLIGLVCWRMIRDAQNTFTLLKTGAVLYLIGVAVLLLLGFISHGEPGSFWQPSVAELQYEKFWKLQGGPEAWRSRLELLSSSLIAIGAQYGWQLAGLMLFGAGMMRSGWLRNSYSPAYYRRQAAWLIPLSLLIQLPGVLLQWQLNWDYRWSGFLLQVPRELGSPLQAIGYLALVYGFWPTLSRLRISHWLTQIGRMALSNYLLQTLICSTLFFHFGLYQQLDRLQLLAVVPLVWLANLLFSTLWLRYFTQGPMEWLWRKLTSLAAGESLRQPTK
>NZ_CP040182.1|WP_071682548.1|2111426_2112464_+|HTH-type-transcriptional-regulator-GalS
MNSVHSTTIRDVAKRAGVSVATVSRVLNNSALTSKETREQVLKAVAELGYRPNANAQALATQSSETLGVVVMDVSDPFFGALVKAVDTVAQQNHKYLLIGNSYHQADKERHAIEVLIRQRCNALIVHAKALGDAELIAFMDQIPGMVLINRIVTGYEYRCVGLNNVFGAEVAVRLLLSQGHQRIGYLGSDHSIEDGPLRQQGYSQAMAAAGFSPPDSWRAYGSPDLQGGEAAMVELLGRNLQLSAVFAYNDAMAAGAMAVLKENGITVPQHFSLVGFDDIPIARYTSPKLTTIRYPIVSMATLATELALKGAAGQLEPQASHLFMPTLVRRHSVAPWQSEASVTL
>NZ_CP040182.1|WP_021180577.1|2112721_2113714_+|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB
MNKKVFTLAALAASMMFGAAAHADTRIGVTIYKYDDNFMSVVRKAIEKDAKASPDVTLLMNDSQNDQSKQNDQIDVLIAKGVKALAINLVDPAAAPVVIDKARANDIPVVFYNKEPSRKALDSYDKAYYVGTDSKESGVIQGELIAKHWKANPAWDLNKDGQIQYVLLKGEPGHPDAEARTTYVIKTLNEKGDKTQQLQMDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALAMVKSGAMAGTVLNDADNQAKATFDLAKNLAAGKPAADGTQWKIVDKIVRIPYVGVDKDNLSQFVK

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Crispr_ID: NZ_CP040182_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_4

2378287-2378384

Orphan

Consensus_repeat	Method
CACATAAGCCCGCACAATTCCCCGCACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040182_4

>merge|NZ_CP040182|4|2378287-2378384|CRISPRCasFinder
CACATAAGCCCGCACAATTCCCCGCACATAGCGAAGCCAGTAATGGCGCGGGTTTGAATGGTGGTGCCGCACATAAGCCCGCACAATTCCCCGCACAT

>NZ_CP040182|4|4|2378287-2378384|CRISPRCasFinder
CACATAAGCCCGCACAATTCCCCGCACAT	AGCGAAGCCAGTAATGGCGCGGGTTTGAATGGTGGTGCCG
CACATAAGCCCGCACAATTCCCCGCACAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_071680685.1\|2374551_2374962_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680682.1\|2376085_2376736_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP040182.1\|WP_071680678.1\|2378767_2379463_+\|DNA-replication-protein	unknown	unknown	gnl\|CDD\|369163
NZ_CP040182.1\|WP_071680681.1\|2376814_2377003_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373126
NZ_CP040182.1\|WP_071680679.1\|2377449_2377863_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680677.1\|2379459_2379675_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680680.1\|2377141_2377438_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP040182.1\|WP_071680671.1\|2381311_2381590_+\|DUF4752-family-protein	unknown	unknown	gnl\|CDD\|339554
NZ_CP040182.1\|WP_071680674.1\|2380243_2380525_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_137751143.1\|2373116_2373314_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680687.1\|2373607_2373859_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680684.1\|2374958_2375648_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227786
NZ_CP040182.1\|WP_071680672.1\|2380846_2381308_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680686.1\|2373861_2374185_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680683.1\|2375644_2375932_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NZ_CP040182.1\|WP_071680669.1\|2382022_2382373_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680673.1\|2380521_2380722_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680675.1\|2379909_2380251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071680670.1\|2381573_2382023_+\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP040182.1\|WP_137751242.1\|2379701_2379893_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_071680684.1\|2374958_2375648_-\|transcriptional-regulator	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	5.84927e-30
NZ_CP040182.1\|WP_071680671.1\|2381311_2381590_+\|DUF4752-family-protein	gnl\|CDD\|339554	pfam15944, DUF4752, Domain of unknown function (DUF4752). This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 90 and 105 amino acids in length. There is a conserved GLA sequence motif.	3.84301e-15
NZ_CP040182.1\|WP_071680682.1\|2376085_2376736_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	1.11349e-33
NZ_CP040182.1\|WP_071680683.1\|2375644_2375932_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	6.42477e-30
NZ_CP040182.1\|WP_071680681.1\|2376814_2377003_+\|hypothetical-protein	gnl\|CDD\|373126	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro. Bacteriophage P22 Cro protein represses genes normally expressed in early phage development and is necessary for the late stage of lytic growth. It does this by binding to the OL and OR operator-regions normally used by the repressor protein for lysogenic maintenance.	1.04385e-14
NZ_CP040182.1\|WP_071680680.1\|2377141_2377438_+\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	3.94661e-29
NZ_CP040182.1\|WP_071680678.1\|2378767_2379463_+\|DNA-replication-protein	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	1.49853e-89
NZ_CP040182.1\|WP_071680670.1\|2381573_2382023_+\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	3.45214e-56

>NZ_CP040182.1|WP_071680679.1|2377449_2377863_+|hypothetical-protein
MQNTGSVNSDESQLKAGDKFDTPYPFKEYEYTYQNYNGDIESVTQWVGGCHKKLEPADCGYGEQAYYVADGEGRRILEVLAVVDMPGKWQRRILYSCTMIPPNEKPRLGRKAFTVTESRFRKMIGGYFADYEVEAAE
>NZ_CP040182.1|WP_071680680.1|2377141_2377438_+|hypothetical-protein
MEIAKTRKAARQIESALLNKIAVKGVSSIADAVGVNPSQVTRWKESLIPRMSMLLAVLEWGVVDDDLARLAKQVAQLLTPNKKPRMAVRGSEQITLNF
>NZ_CP040182.1|WP_071680681.1|2376814_2377003_+|hypothetical-protein
MLKEKATEHFGSQHAIAIALGVSDSAVSQWKEVIPERAAMKLSLITKGKLKYLAEFYCKAAA
>NZ_CP040182.1|WP_071680682.1|2376085_2376736_-|helix-turn-helix-domain-containing-protein
MKTETVGERIQALRKEKKLSQVSLAKAIGVSNVAISQWERSETEPKGDNLLALAAELGRDPGYLLYGNEIRGDNISYAGTYKPGKKYPVLSSVQAGAWSEAVETYSLSDIDLWLESDIHIQGEAFWLLVDGDSMTAPTGLSIPEGTYVLFDTGREPVNGSLVIAKLSDSNEATFKKLVVDGGARYLKGLNPAWPLIPINGNCRIIGVGVETKMRLV
>NZ_CP040182.1|WP_071680683.1|2375644_2375932_-|type-II-toxin-antitoxin-system-HigB-family-toxin
MKVLNVEKLHSFSRKHNQAKGALDSWHDEVIRETWKTTQDIRKRFNSADFLPDNRVIFNIKGNNYRLVVQVIYQAGMVIVERVGTHADYDRWRLK
>NZ_CP040182.1|WP_071680684.1|2374958_2375648_-|transcriptional-regulator
MNRTCWRILKNSEEHALAMARIIELASGDLQPGTDDFDELELLGLLIEHYEGQKYPMDKPDPIEAIKFRMDQQGLSQADMKQYIGSASKVSEVLNRKRPLSLSMIRRIHDGLGIPADILIQDMSAIEWSLVDADETDVTVTTHIPMFEAEPALFMTETAMGMGYFSGKITEKYVSTTMHEVGLKATGRTDISINDIDNFLIIKDSSSSLTASAAKIFEMNTDRNYTLVS
>NZ_CP040182.1|WP_071680685.1|2374551_2374962_-|hypothetical-protein
MKIELIGKRVTSLAMAPIEGNATAKKNMTAKVTLNNEIYSNVKDSKLFRVKYHVVVMVEDWFKIELNYEFDFKSEEDFSWEIVKSHEVRSVVPSIAYPYIKTYAEQLMVISNIGNFNLPYIDFFGNPMEPAGSDNS
>NZ_CP040182.1|WP_071680686.1|2373861_2374185_-|hypothetical-protein
MTTITYGKSVEPVSKENAATRRHQRRAAEAIDRKLVELRICKALGQQPEAVEVASKEVVAARKPSSRAELVTLTHFSKPVSNSDNTCLPQVAMFNAGHRKTTNVTAR
>NZ_CP040182.1|WP_071680687.1|2373607_2373859_-|hypothetical-protein
MEVWAKLFESNGRQVLVEKSSDDDGHPEVLFRWAEDGFYVSTGPTWKGSDDEDFEKRDKFFHTISQETVDAFVVKIMATINNE
>NZ_CP040182.1|WP_137751143.1|2373116_2373314_-|hypothetical-protein
MIFGKTSSNPSTDTGKAQSVTIGDITISQFCDGSVWLESESGEDAGSFDEAKLAEAIKGFYDANL
>NZ_CP040182.1|WP_071680678.1|2378767_2379463_+|DNA-replication-protein
MSNLTRIIANRDSSALARMAGSAPEAVKMVNPEAEKLVDALFRNLKQVFPAAVNTTFRDPNDEVAAKRQWIAAFAENGIRSREQLSAGMQHARASESPFWPSPGQFIAWCKQGAIRASGLPDAAELYAMVMDYAKRRGLYASPEAFPWSSNATYWMVTKLYSEMRGLNLSESELLKHCGKELAAMAKRVEANEPIPAPVVQIPKLHIPVSNEKGLDKIAELRAKLNMPRKS
>NZ_CP040182.1|WP_071680677.1|2379459_2379675_+|hypothetical-protein
MKIDSNDYEVINRYAGSDRSWHDRVSTPEALKRQITKSRWEVTFFLDDMKTFARIQDRLALKQARKGDSHC
>NZ_CP040182.1|WP_137751242.1|2379701_2379893_+|hypothetical-protein
MQERYESDQRVNTLCNLPANTFAAIYAECDPVWAGARYNGVYYSELEIYAASLMRDEGYEDFL
>NZ_CP040182.1|WP_071680675.1|2379909_2380251_+|hypothetical-protein
MTFVSQKKSTRTRYGGTFITFKVNKNGGCASRIASGTGLNGKTVDIQVCEETKRVRVKESDEGFRVHKTGALTMSGDTYLAVAAGRTGKIQVALNLNDDGWWYGSYAQGDNHG
>NZ_CP040182.1|WP_071680674.1|2380243_2380525_+|hypothetical-protein
MDKQTESREQFEKWFNKQMVMPIIASNETVVRLMWKAWQASRESLVVDLPVCTDVNSAKSFAGRAMLTGKNSAITKCADALRAIGIRIKGEAV
>NZ_CP040182.1|WP_071680673.1|2380521_2380722_+|hypothetical-protein
MSDILGQRWSKEAEMVEGWSKAAAHNEWKEKVVTAARQWVNCKGRYHSEQNMTALIELFRQEPEKP
>NZ_CP040182.1|WP_071680672.1|2380846_2381308_+|hypothetical-protein
MKELDDFTVERLQAFIDKPLDNGFTRDEQMALVRIALAAKTAEPVTWWTGPEPTWTGEIESFHDHETGGHQIPLVPALYSYPLPNSPELPDGWILIPAKASLAHLKSIACRYRHDFYLLDDNQKDSALSVARQMYEECSGQGFFTIPVPTTEK
>NZ_CP040182.1|WP_071680671.1|2381311_2381590_+|DUF4752-family-protein
MKELSFYDWMTMGLMAIGYVYIITRAVHWLIVILAKRFDRFRFRKSPRQLAVNALHDAFDLRSIRPGKWITIELEDGLSIRIAREKQDGEKA
>NZ_CP040182.1|WP_071680670.1|2381573_2382023_+|recombination-protein-NinB
MAKKPKFFLRTDTQKQNALQIIRDLPTDLHRPLVITITEMTRTIAQNDKMWAMLTDISKQVEWYANWLTPEEWKHVITAALQGQKTVPGINGGFVVLGKSTSKMTIREMCDVIECAYAFGAERGVAWTEETKLADELSKRFGDKQKQVA
>NZ_CP040182.1|WP_071680669.1|2382022_2382373_+|hypothetical-protein
MGKPNWTESEMSYLTQHYEKTDNKTIGIALGRSQASISAKGISMGLVKCMLTVNKNRSESGKAAAKSRIYHTDNTDKWSDMGLVFVPTLAGHPSFEAYRSTSRVYQLDSLLRARAA

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Crispr_ID: NZ_CP040182_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_5

3243369-3243474

Orphan

Consensus_repeat	Method
AGGGGCTAATAGCGCCCTCTCCCTGTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040182_5

>merge|NZ_CP040182|5|3243369-3243474|CRISPRCasFinder
AGGGGCTAATAGCGCCCTCTCCCTGTGGGACATCGCTAGAGTTGGCTGATATTACCCCCCTTACTTCCAAAAAAGCAGGGGCTAATAGCTCCCTCTCCCTGTGGGA

>NZ_CP040182|5|5|3243369-3243474|CRISPRCasFinder
AGGGGCTAATAGCGCCCTCTCCCTGTGGGA	CATCGCTAGAGTTGGCTGATATTACCCCCCTTACTTCCAAAAAAGC
AGGGGCTAATAGCTCCCTCTCCCTGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_071683422.1\|3243495_3244668_-\|lipopolysaccharide-assembly-protein-LapB	unknown	unknown	gnl\|CDD\|236983
NZ_CP040182.1\|WP_071683428.1\|3239665_3239884_+\|osmotically-inducible-lipoprotein-OsmB	unknown	unknown	gnl\|CDD\|182532
NZ_CP040182.1\|WP_071683416.1\|3251585_3252530_+\|transketolase	unknown	unknown	gnl\|CDD\|226467
NZ_CP040182.1\|WP_071683425.1\|3241428_3241689_+\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|137782
NZ_CP040182.1\|WP_071683420.1\|3245345_3246290_-\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP040182.1\|WP_071683415.1\|3252532_3254023_+\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|198363
NZ_CP040182.1\|WP_071683417.1\|3249575_3250676_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP040182.1\|WP_071683697.1\|3248098_3249574_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP040182.1\|WP_071683426.1\|3240372_3241101_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP040182.1\|WP_021806559.1\|3234426_3235329_+\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP040182.1\|WP_071683427.1\|3240035_3240362_-\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
NZ_CP040182.1\|WP_024486496.1\|3250762_3251593_+\|transketolase	unknown	unknown	gnl\|CDD\|226468
NZ_CP040182.1\|WP_071683419.1\|3246499_3247441_+\|D-ribose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380622
NZ_CP040182.1\|WP_071683421.1\|3244674_3244977_-\|LapA-family-protein	unknown	unknown	gnl\|CDD\|226294
NZ_CP040182.1\|WP_059200935.1\|3238593_3239289_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP040182.1\|WP_071683429.1\|3235333_3237766_+\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	unknown	unknown	gnl\|CDD\|273798
NZ_CP040182.1\|WP_071683418.1\|3247454_3248057_+\|DUF2291-family-protein	unknown	unknown	gnl\|CDD\|227905
NZ_CP040182.1\|WP_071683424.1\|3241769_3242699_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176149
NZ_CP040182.1\|WP_071683423.1\|3242852_3243140_+\|Arc-family-DNA-binding-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_037376111.1\|3237814_3238561_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_071683422.1\|3243495_3244668_-\|lipopolysaccharide-assembly-protein-LapB	gnl\|CDD\|236983	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.	0
NZ_CP040182.1\|WP_071683428.1\|3239665_3239884_+\|osmotically-inducible-lipoprotein-OsmB	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	3.32488e-24
NZ_CP040182.1\|WP_071683416.1\|3251585_3252530_+\|transketolase	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	8.02432e-127
NZ_CP040182.1\|WP_071683425.1\|3241428_3241689_+\|DUF1471-domain-containing-protein	gnl\|CDD\|137782	PRK10259, PRK10259, hypothetical protein; Provisional.	1.14736e-16
NZ_CP040182.1\|WP_071683420.1\|3245345_3246290_-\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	7.01455e-100
NZ_CP040182.1\|WP_071683415.1\|3252532_3254023_+\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|198363	cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP040182.1\|WP_071683417.1\|3249575_3250676_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.70142e-85
NZ_CP040182.1\|WP_071683426.1\|3240372_3241101_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	1.69039e-141
NZ_CP040182.1\|WP_021806559.1\|3234426_3235329_+\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	1.69429e-128
NZ_CP040182.1\|WP_071683427.1\|3240035_3240362_-\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	5.87827e-65
NZ_CP040182.1\|WP_024486496.1\|3250762_3251593_+\|transketolase	gnl\|CDD\|226468	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	3.91998e-119
NZ_CP040182.1\|WP_071683697.1\|3248098_3249574_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP040182.1\|WP_071683421.1\|3244674_3244977_-\|LapA-family-protein	gnl\|CDD\|226294	COG3771, COG3771, Predicted membrane protein [Function unknown].	1.42418e-40
NZ_CP040182.1\|WP_059200935.1\|3238593_3239289_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	2.1762e-174
NZ_CP040182.1\|WP_037376111.1\|3237814_3238561_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	8.68731e-79
NZ_CP040182.1\|WP_071683418.1\|3247454_3248057_+\|DUF2291-family-protein	gnl\|CDD\|227905	COG5618, COG5618, Predicted periplasmic lipoprotein [General function prediction only].	1.99202e-28
NZ_CP040182.1\|WP_071683424.1\|3241769_3242699_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176149	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.42232e-89
NZ_CP040182.1\|WP_071683419.1\|3246499_3247441_+\|D-ribose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380622	cd19967, PBP1_TmRBP-like, D-ribose ABC transporter substrate-binding protein such as Thermoanaerobacter tengcongensis ribose binding protein (ttRBP). Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type 1 periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.	3.72235e-133
NZ_CP040182.1\|WP_071683429.1\|3235333_3237766_+\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0

>NZ_CP040182.1|WP_071683423.1|3242852_3243140_+|Arc-family-DNA-binding-protein
MSEISTLTIKIPLALKEQIKAIALENQLSLSAEVCQRLEHSLEVPAKASKKAAPLHHDDIDNQGTEEEVEQPLSQKELKKLRQLLKGGAKSSKKK
>NZ_CP040182.1|WP_071683424.1|3241769_3242699_-|LysR-family-transcriptional-regulator
MTEPDLNLLIALDALLAEVSVAGAARRLGLSASAMSRTLTRLRTVTEDPLLVRAGRHMVLTPYAEELRERTQNAVFAARSVLRPSATELNLATLERTFNIRANEGFVEAFGASLIAASAKAAPLVRLRFSPKPEKTSKPLREGLVDLEIGVLGTMGPEIRLQALFRDRFVGVVRAGHPLTREPEVTASQYADLGHIVASRRERTYGPVDEALAELGLRRNIAAVVPSFPAALAVAQESDLVALVPASFLINQPVANIEGGVGTLWAFELPVTTRLITISQLWHPRAEADPAHRWLRQLVLNVCRKLVPE
>NZ_CP040182.1|WP_071683425.1|3241428_3241689_+|DUF1471-domain-containing-protein
MKGIKYFAAATVLALTSFASVAAEPVSQQQAQNLTEVGVVSAGGVTTLSSLEAKLAAKAEAQGASSYRIVAAGGNNMLHGNAVIYK
>NZ_CP040182.1|WP_071683426.1|3240372_3241101_-|orotidine-5'-phosphate-decarboxylase
MKSENNSNNNDLKSSPIIVALDYADRSAALAFADRIDPRDCRLKVGKEMFTLFGPEIVRDLHQRGFEVFLDLKFHDIPNTTAHAVAAAAELGVWMVNVHASGGARMMNAAKEALLPYGADAPLLIAVTVLTSMEAEDLRAIGIELSPAEQAERLARLTRDCGLDGVVCSAQEASRLKVACGNQFQLVTPGIRPEGSAAGDQRRVMTPVQALAAGVDYMVIGRPITQSADPAAALSAIRASLA
>NZ_CP040182.1|WP_071683427.1|3240035_3240362_-|stress-response-translation-initiation-inhibitor-YciH
MNDDNSRLVYSTDSGRIKQEEAKPERAKGDGIVRIQRQTSGRKGKGVCLITGVDLDDSALDKLAAELKKKCGCGGSVKDGVIEIQGDKRDLLKQLLEAKGMKVKLAGG
>NZ_CP040182.1|WP_071683428.1|3239665_3239884_+|osmotically-inducible-lipoprotein-OsmB
MMIINQRFATAALVITLALSLSACSNMSKRDRNTAIGAGAGAVGGAVLTNGSALGTIGGAAVGGIIGHQVSK
>NZ_CP040182.1|WP_059200935.1|3238593_3239289_-|L-ribulose-5-phosphate-4-epimerase
MLNELKQQVLEANLQLPRHHLVTFTWGNVSAVDRQQGLMVIKPSGVEYDAMTREDMVVVELESGKVVEGSKKPSSDTDTHRVLYLNFAAAGGIVHTHSRHATIWAQAGLAIPAWGTTHADYFYGDIPCTRLMRDEEINGRYEWETGQVIVETFKERGLDAAQIPAVLVHSHGPFAWGKDADGAVHNAVVLEELAYMGIFSRQLAPGLGNMQQSLLDKHYLRKHGAHAYYGQ
>NZ_CP040182.1|WP_037376111.1|3237814_3238561_+|DeoR/GlpR-transcriptional-regulator
MNSRQQTILQLVNDRRRISVGELARASGVSEVTIRQDLNLLEKRSYLKRVHGSAVALESDDVDARMMSNFTLKQKLAQYAASLVNDGETIFIESGSANALLARYLAERKRVTLITVSHYIAHLLKETDCDVIVLGGMFQKKSETVVGPLTRMCIQQVHFSKAFIGVDGYHAETGFTGRDMMRADVVNAVLAKGVENIVLTDSSKFGQIQPNPLEPMSQIGRVITDSRIANDYQQLLKRQGIKLDLVNE
>NZ_CP040182.1|WP_071683429.1|3235333_3237766_+|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme
MTTLDLTTLTERTLAHKNALIHIVKPPVCTERAQHYTETYQQHQDKPLPVRRAMALANHLAKRSIWIKNDELIIGNQASQLRAAPIFPEYTVSWIESEIDELADRPGAGFSVSEQDKKVLHTLCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNFPLLLEKGLDGLREKVAERRERLHLTDWDDLHKEQFLKAIDISLDALSEHILRFAQLAREMAQAEQRIWRREELLTMAANCELIAHQPPQTFWQALQLCYFIQLFLQIESNGHSVSFGRLDQYLYPWYRRDVELEQSLPREKAIEMLHSCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQKLVNGQPCDAVNPLSYTILESCGRLRSTQPNLSVRYHAGISNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGVEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLAALEQGRDATSGKIFLPQELGLSQGNFSQFDQVLDAWDTQIRYYTRKSIEIECVVDTVLEENAHDIVCSALVDDCIERGKSVKQGGAKYDWVSGLQVGIANLGNSLEAVRKLVFDQGIIGQQQLAQALANDFAGLDGEQLRQRLINAAPKYGNDVDDVDQLLVRAYQTYIDELKQYHNTRFGRGPIGGTYYAGTSSISANVPFGAATMATPDGRKAHTPLAEGASPASGTDHLGPTAVFNSLSKLPTESILGGVLLNQKLNPSTLENPRDREKLMLMLRTFFEAYHGWHVQYNIVSRETLLAAKQHPDQYRDLVVRVAGYSAFFTALSPDAQDDIIARTEHTL
>NZ_CP040182.1|WP_021806559.1|3234426_3235329_+|glycyl-radical-enzyme-activating-protein
MLFNLQRYSTHDGPGIRSVVFLKGCSLGCRWCQNPESRSRQQELLFDERLCLAACTLCSESCPHAITRVDDNTLTLQRSLLTAADYDALNGCCPTGALSVCGTALDLDAVMAEVMRDKPYYLRTGGGLTLSGGEPFMQPEVAAELLKRGREAGIHTAVESCLHTPWSYIEPSLPWLDLMLADLKHVDQVRFKQWTEGSAKRVMDNFRRLAAAGTQITVRVPLIPEFNADRDSIRAITDFAADEIGVKEIHFLPYHTLGMNKYHLLGAPYYASRTPLDDPELLAYAEDYASVKGLTAILRG
>NZ_CP040182.1|WP_071683422.1|3243495_3244668_-|lipopolysaccharide-assembly-protein-LapB
MLELLFLLLPVAAAYGWYMGRRSAQQDKQQEANRLSREYVAGVNFLLSNQQDKAVDLFLDMLKEDSNTVEAHLTLGNLFRSRGEVDRAIRIHQALMESASLTFEQRLLAIQQLGRDYMAAGLYDRAEDMFSQLINEEDFRVSALQQLLVIHQATSDWQKAIEVAEKLVKLGKEKQRVEIAHFYCELALQAMGSDDLDKAMGLLKRAASADKQCARVSIMVGRIFMAQEEYAKAVETLTRVLDQDKELVSEALPMLQECYQHLPQQQQEWADFLKRCVAENTGATAELMLAEVIEQREGSDVVQVYINRQLQRHPTMRVFYRLMDYHLADAEDGRAKESLLLLRDMVGEQIRTKPRYRCHKCGFTAHSLYWHCPSCRAWSSVKPIRGLDGQ
>NZ_CP040182.1|WP_071683421.1|3244674_3244977_-|LapA-family-protein
MKYLLIFLLVLVIFVASVTLGAHNDQVVTFNYLVAQGEYPVSTLLATLFGAGFVLGWVICGLFYLRTRIALGRAERKIKRLELQLEAPVEPAPLPAVSKE
>NZ_CP040182.1|WP_071683420.1|3245345_3246290_-|sugar-binding-transcriptional-regulator
MSKQDEQRLLVKIATLYYVDGMKQSEIAGLLNLSQSFVSRSITRCQKEGVVKISVIQPANIFLSLEQAIEKQYGIRQAIVVDVDEPASGAQIKHAIGRAAAHYVETRLRVNDLVGISSWSSTIRAMVDELHPQSIKARGVIQLLGGVGPNGNVQATILTQNLAAQLDCPAWLLPSQSIEHSVEERAKLVASQDVAEVVGKFAEVDVAIVGIGDLEPSQLLKNSGNYYGEAMLQTLAERGAVGDICLHYFNAQGEPVLGKEEDPVIGMELTQVRECPHVVALAGGVDKSNAIRGALKGGYIDVLITDYPTARQLI
>NZ_CP040182.1|WP_071683419.1|3246499_3247441_+|D-ribose-ABC-transporter-substrate-binding-protein
MKYTLLKTSLLAVLLASSASLYAADKGLIAIITPSHDNPFFKAEADGAAAKAKELGYSTLVASHDDDVNKQNQLIETAIARKAKAIILDNAGADATLGPLEKAKAAGVPAFLIDREINKTGVAVAQIVSNNYQGAQLGAEKFAKLLNGKGKYVELLGRQSDTNAHVRSQGYHDVLDDYPDLKMVAQQTANWSQTEAFNRMEAILQTQPDIVGVISGNDTMALGAEAALKAAGKTNVIVVGFDGSDYVRDSIIAKSNIKATVLQPGWQQAQMAVVQADYFLQNGKAKEQEKQLMDCVLIDENNASKLKTFNLTK
>NZ_CP040182.1|WP_071683418.1|3247454_3248057_+|DUF2291-family-protein
MSLKQWGVGLLCCSTLLLTACRVVDLDESGNPVIPPDPNAKVSFANQTPAQIAQQTWNDRVMTQARNHALEASALSDRATGTKDESVFVKAQSNVEKVDLSNAREHTLTFTLNNQPVVVQVGPVMRGNAIRDAAGFKFEDFTNQVQFAQLAKAYNREAAKQMPAVDESWRQKPVTILMAVTLNNGAISEAIALDLQQGAP
>NZ_CP040182.1|WP_071683697.1|3248098_3249574_+|sugar-ABC-transporter-ATP-binding-protein
MLFPGTVALDNVDYNVWRGKVNVIIGENGAGKSTLMKILAGVQQPSLGEIQLNGETVKFANTREAAALGIGMVHQELNLFENLSVAENIFLGRELQHGISPIDETTQQLRTAELLTRLDQPISPKELVANLKVGQQQLVEIAKALAEDADILILDEPTSALSKTEVDILFRVIRELTRQGVSIIYISHRLEELMAIGDVITILRDGKFQAEAQVSDIDVPWIVREMLGSEPVSSFLQPGRQFGAPILEAEHLTCVNAAGNAVVNDVSFQVRAGEIVGIYGLMGAGRTELFECLLGTQRNYLGKLWLDSKPVPARLSTAERIRMGMSLVPEDRKRTGIFPISSVANNLTIASLWRRLQRGLAISRADETAVVASTIGNLSIKVSSPEVEIQALSGGNQQKVVIGRSLLTNPKLLLLDEPTRGIDVGAKADVFRMMVQLSEQGIAVVFSTSDLKEIMAVSDRILVMSVGKVTADIAREQAEESALVSASAQGF
>NZ_CP040182.1|WP_071683417.1|3249575_3250676_+|ABC-transporter-permease
MKTNDTIALTARPSPLFGSRENLLLLLLKLRTFIALFLIVGFFAAMVPGFLAAGSMVIMIKHIAINAFLALGITFVIITAGIDLSIGATLGLCGMIAGWLITKGIVLPMFGIAIFPSVWVVVPVVLVIGGLIGSVNGWIITRYNVAPFICTLGTMYILRGAAMLTSGGETFPGLAGNPQLGNTGFDLIGSGTLFGIPWAIWIMIVLAIVIAYVARRLPFGRHVYAIGDNERAAELSGVKVRQVKVWVYTLSGFCAAIAGIVVSAQLVASHPANGTAFEMNAIAAVVLGGTSLAGGRGTILGTLVGAFVIGFLADGLVMMGVSEFWQMVIKGIVIIVAVIIDQMQNRMQQKAAVVAQKTLMEGAGKV
>NZ_CP040182.1|WP_024486496.1|3250762_3251593_+|transketolase
MNPFSLSVTDLEKTARAIRRRIIVLNANSPAGGHTGADLSQVEILTALYFRVMNCSPELVNSDERDIYIQSKGHAAGGYYCVLAEAGFIPPEWLPTYQHADSHLPGHPVKHKTPGVELNTGALGHGLPVAVGIALAAKRSNSKRRVFVVTGDGELAEGSNWEAALVAAHYQLDNLIIINDKNNLQLAGATKDILNTDPLDEKWRAFGLAVTQCRGNDMQDVVTTLEGLQPQGKPQVVIANTTKGAGISFIQGRAEWHHRIPKGDEVELALEELKDE
>NZ_CP040182.1|WP_071683416.1|3251585_3252530_+|transketolase
MSNSEHLATVMVNAFIDAVNRGIDLVPVVADSTSTAKISPFVKQFPDRLVNVGIAEQTLVGTAVGLSMGGKIAVTCNAAPFLISRANEQIKVDVCYNNSNVKLFGLNSGASYGPLASTHHSIDDIAVLRGFGNIEIYAPSCPVECRQIIDYALQHVGPVYIRLDGKALPELHDENYHFTPGAIDVLREGADVALVAMGSTVYEIVNAAAQLADRGISAAVINVPSIRPCDTAQLLAILQKSRHVITVEEHNINGGVGSLVAEVLAEAGCAIPLIRLGIADGGYAIAAGREDMRAHHGIDAASVIRNATALCKGA
>NZ_CP040182.1|WP_071683415.1|3252532_3254023_+|FGGY-family-carbohydrate-kinase
MSSPIILAIDEGTTNAKVVAVDRHGQIVARCSVGVAMNHPLPGLAEQDPLAIWQAVCQALGGCLRQLGTVTVAGIAISNQRESVLVWQRLDGKPLTPVVSWQDRRSETYCRTLCSQGYSELITRLTGLPVDPLFPAAKIRALLAGIPDGMRRAEQGELCIGTLDSWLNWQLTAGRSFTTDYSNAARTQLFNIYRAQWDNELLALFGIPQAALAQVRPSSSLHGEVQTADIAGLPVGTPILALIGDSHAALYAQQNACGQVVKATYGTGSSLMYSLAEPVNRDTPLSTTLAWHDGRLNYALEGNITHTGSGAAWLGGMLGVNDPLQLTAMAQSVENNQGVYYVPALSGLGAPWWDIQARGMVCGLTDAATPAVLARAALESMVYQIADVFFAMEKTCGKQLATLSVDGSATKNRWLMQLQADVLQRPLVIHSAAEVSALGASMLAGKFIGWWQDGETLMELASGGERLHPQSGRQQTMQDNYKQWLEAVARCRFQPK

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Crispr_ID: NZ_CP040182_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_6

3687927-3688020

Orphan

Consensus_repeat	Method
TCGAGTTAGCTTAGATTATCGCTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040182_6

>merge|NZ_CP040182|6|3687927-3688020|CRISPRCasFinder
TCGAGTTAGCTTAGATTATCGCTTTATTTCCAAACGGGCAGAGGCTACCAGCTCCCTCTCTGAACTGTTCGAGTTAGCTTAGATTATCACTTTA

>NZ_CP040182|6|6|3687927-3688020|CRISPRCasFinder
TCGAGTTAGCTTAGATTATCGCTTTA	TTTCCAAACGGGCAGAGGCTACCAGCTCCCTCTCTGAACTGT
TCGAGTTAGCTTAGATTATCACTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_071680931.1\|3692867_3693683_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP040182.1\|WP_071680927.1\|3688140_3689082_+\|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX	unknown	unknown	gnl\|CDD\|274064
NZ_CP040182.1\|WP_071680925.1\|3685252_3686458_+\|3-oxoadipyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|181624
NZ_CP040182.1\|WP_071680928.1\|3689094_3689691_+\|phenylacetic-acid-degradation-protein-PaaY	unknown	unknown	gnl\|CDD\|131340
NZ_CP040182.1\|WP_071680929.1\|3691138_3692323_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP040182.1\|WP_071680932.1\|3693907_3694813_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176160
NZ_CP040182.1\|WP_071680933.1\|3694914_3695541_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198315
NZ_CP040182.1\|WP_071680926.1\|3686477_3687785_+\|phenylacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|131210
NZ_CP040182.1\|WP_071680930.1\|3692512_3692884_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
NZ_CP040182.1\|WP_071680921.1\|3680103_3680604_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP040182.1\|WP_039996003.1\|3679336_3680098_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP040182.1\|WP_071680922.1\|3680618_3681677_+\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	unknown	unknown	gnl\|CDD\|131215
NZ_CP040182.1\|WP_059201139.1\|3689720_3691124_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP040182.1\|WP_071680934.1\|3695542_3696466_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|274926
NZ_CP040182.1\|WP_021180872.1\|3696640_3696865_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|183127
NZ_CP040182.1\|WP_071680924.1\|3683286_3684816_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236211
NZ_CP040182.1\|WP_021180891.1\|3679039_3679327_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	unknown	unknown	gnl\|CDD\|237504
NZ_CP040182.1\|WP_071681127.1\|3684815_3685256_+\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	unknown	unknown	gnl\|CDD\|131339
NZ_CP040182.1\|WP_071680923.1\|3681686_3682460_+\|2,3-dehydroadipyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|182026
NZ_CP040182.1\|WP_021805752.1\|3682463_3683255_+\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	unknown	unknown	gnl\|CDD\|236163

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_071680931.1\|3692867_3693683_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.12057e-14
NZ_CP040182.1\|WP_071680927.1\|3688140_3689082_+\|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX	gnl\|CDD\|274064	TIGR02277, Transcriptional_repressor_PaaX, phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription. [Regulatory functions, DNA interactions].	1.96904e-102
NZ_CP040182.1\|WP_071680925.1\|3685252_3686458_+\|3-oxoadipyl-CoA-thiolase	gnl\|CDD\|181624	PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.	0
NZ_CP040182.1\|WP_071680928.1\|3689094_3689691_+\|phenylacetic-acid-degradation-protein-PaaY	gnl\|CDD\|131340	TIGR02287, Phenylacetic_acid_degradation_protein_PaaY, phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. [Energy metabolism, Other].	4.92554e-110
NZ_CP040182.1\|WP_071680929.1\|3691138_3692323_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP040182.1\|WP_071680932.1\|3693907_3694813_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176160	cd08471, PBP2_CrgA_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 2. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.445e-90
NZ_CP040182.1\|WP_071680933.1\|3694914_3695541_+\|glutathione-S-transferase	gnl\|CDD\|198315	cd03206, GST_C_7, C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	5.39753e-45
NZ_CP040182.1\|WP_071680926.1\|3686477_3687785_+\|phenylacetate--CoA-ligase	gnl\|CDD\|131210	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. [Energy metabolism, Other].	0
NZ_CP040182.1\|WP_071680930.1\|3692512_3692884_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	2.92802e-27
NZ_CP040182.1\|WP_071680921.1\|3680103_3680604_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	3.87247e-67
NZ_CP040182.1\|WP_039996003.1\|3679336_3680098_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	4.71694e-112
NZ_CP040182.1\|WP_071680922.1\|3680618_3681677_+\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	1.11701e-171
NZ_CP040182.1\|WP_059201139.1\|3689720_3691124_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	2.69847e-151
NZ_CP040182.1\|WP_071680934.1\|3695542_3696466_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|274926	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily consists of proteins mostly from species that lack the capability to synthesize F420, and therefore most likely all bind FMN.	4.30384e-20
NZ_CP040182.1\|WP_021180872.1\|3696640_3696865_+\|YdcH-family-protein	gnl\|CDD\|183127	PRK11415, PRK11415, hypothetical protein; Provisional.	8.58672e-30
NZ_CP040182.1\|WP_071680924.1\|3683286_3684816_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	0
NZ_CP040182.1\|WP_021180891.1\|3679039_3679327_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	gnl\|CDD\|237504	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional.	2.08945e-63
NZ_CP040182.1\|WP_071681127.1\|3684815_3685256_+\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	gnl\|CDD\|131339	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD. This member of the domain family TIGR00369 (which is, in turn, a member of the pfam03061 thioesterase superfamily) is nearly always found adjacent to other genes of the phenylacetic acid degradation pathway. Its function is currently unknown, but a role as a thioesterase is not inconsistent with the proposed overall pathway. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.	6.98923e-51
NZ_CP040182.1\|WP_071680923.1\|3681686_3682460_+\|2,3-dehydroadipyl-CoA-hydratase	gnl\|CDD\|182026	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.	7.91182e-139
NZ_CP040182.1\|WP_021805752.1\|3682463_3683255_+\|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	6.05632e-169

>NZ_CP040182.1|WP_071680926.1|3686477_3687785_+|phenylacetate--CoA-ligase
MTTNPRPIDAIEFASRDEIEALQLERLQWTLHHAYNNVPMYQRKFDQAGVHPSDLKQLSDLALFPYTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGRPTVVGYTQRDIDNWADIVARCLRSAGATAKDKIHVAYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQVQLILDFKPDVIMVTPSYCLTLIDELEHKMGGDARNCSLRLGVFGAEPWTESLRHEIESRMGIKALDIYGLSEVMGPGVAMECAESGGGPTIWEDHFLPEIINPETGAIQTDGEHGELVFTTLTKEALPVIRYRTRDLTHLMPGDARNMRRMGKITGRSDDMLIIRGVNVFPSQVEEQIMQFEHLSPHYQLQVSRAGHLDTLAVRVELKESALTLNHQQRCDICHQLRHHIKSIVGVSTDVSIANCGDIPRSEGKAQRVIDLRPR
>NZ_CP040182.1|WP_071680925.1|3685252_3686458_+|3-oxoadipyl-CoA-thiolase
MNQAFICDGVRTPIGRYGGALANVRADDLAALPLRALLERHPNVDWSRVDDVILGCANQAGEDNRNLARMAALLAGLPQNVSGTTINRLCGSGLDALAMAARSIKAGEASLVLAGGAESMTRAPLVMGKADSAFSRQAQLFDTTIGWRFVNPLMHAAFGTDSMPETAENVAAQFGISRADQDAFALRSQQRTALAQQRGILAQEIIPVSLSGKKGAITQFSEDEHPRAETTLEQLQKLKTPFRQPGCITAGNASGVNDGAAALIVASEAMALQQALTPRARIVGTATCGVEPRLMGIGPLPATRKVLEIAGLSLAQMDVIELNEAFAAQALAVLRQLGLPDDAEQVNPNGGAIALGHPLGMSGARLALAALFELERRAGRYALCTMCIGVGQGIAMIIERV
>NZ_CP040182.1|WP_071681127.1|3684815_3685256_+|hydroxyphenylacetyl-CoA-thioesterase-PaaI
MNANTPRALAQRCAEQMFNQDTCAQAMDMRIDAVDAGMAKVSMTVGPQMLNGHQTCHGGQLFSLADTAFAYACNSQGLAAVASGCTIDFIRPALAGDRLTACAEVRHQGKTTGLYDVEIVNQLGKTVAWFRGRAHRLGHNILGEQP
>NZ_CP040182.1|WP_071680924.1|3683286_3684816_+|3-hydroxyacyl-CoA-dehydrogenase
MAINTLATSATVAVIGAGTMGIGIAQVAAAAGHQVKLFDIALPAASRALEQLGQRLRKRVEAGKADAHSTETLLGHIQLTSSLSDLADCSLVIEAVAEKLAIKQSLFRDLEAICSTDTLFASNTSSLSITAIASALQHPQRMAGLHFFNPAPLMKLVEIVGGLETSPETLSSLQALAQNWGKHSVVCRSTPGFIVNRVARPFYGETLRALEEQIADPATLDAVLRDAGGFAMGPLQLTDLIGQDINYAVTESVYHAFYQDSRFTPSLVQQELVAAGHFGRKSGRGFYRYGSEQAVPSATFASAVTAELPQSVTLHGDWSAIGEFAQLLAGNAAAIKHPGQTSPFARLDEVTFMLTNGKTASQVAEEIGSPVVLFDLSVNYQHAPVIAISSAEQNAVPHTAKVICLLQSLGKQVIHLPDYPGLLVMRTVAMLANEALDVVNKGVANAADTDDAMRFGVNYPQGPLAWGSKLGWQQLLTTLENLQRYYAEPRYRPMPLLRRYAAHYSGAKC
>NZ_CP040182.1|WP_021805752.1|3682463_3683255_+|2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA-isomerase
MENAFILSHIEAGVLTITLNRPDRLNSFNDEMHHQLSEALTVAERDDSVRCVLITGAGRGFCAGQDLNDRNVSVDQAPPDLGLSVERFYNPLIRRLSALPKPIVCAVNGVAAGAGAALAMACDIVVAADNASFIQSFCKLGLVPDSGGSWYLPRLAGHARAMGMALLGDKISAQQALEWGMIWQVVAAAELADHTQSMAKQLATQPTYGLGLIKKAMYSSASNTLDQQLDLERDLQRLGGRSEDYREGVSAFFAKRSPNFSGK
>NZ_CP040182.1|WP_071680923.1|3681686_3682460_+|2,3-dehydroadipyl-CoA-hydratase
METPWILREQQQRVVTLTLHRPDARNALSTACLEQLVYQLEQADSDTDVGAVVIAGAARFFAAGADLRELQQQDVAATQLDHRPLLWQHLAQFSKPLLAAVNGYALGAGCELALACDITICGESARFGLPEITLGLMPGAGGTQRLIRSVGKSRAYQMVLTGEAIDARCALQAGLVSEVCVDALTLERTQQLAQRISQQAPLALRAAKQALKQAQETGLSQGLQMERQQFVTLAATEDRREGIAAFFEKRTPNYQGR
>NZ_CP040182.1|WP_071680922.1|3680618_3681677_+|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK
MTVFHRLNVAAIERETPDAVAITLRVPDELKSHYGYTPGQHLTLKARVNGEELRRCYSICSAPQDGVLQIGIKAIHQGRFSSYINQSLQVGDELEVMLPQGRFGYQPQAQTQGNYLAIAAGSGITPMLSIIKATLQLEPNSQFTLIYGNRTSRSVMFKEALSDLKNRYPQRFQPLYLFSQENLDSPLLSGRIDRDHLTALGNTLVDFNEFDHAFICGPEAMMDDAHTVLELAGMPAERIHSERFNTSGIVARPANAGSRNATQVEIRLDGRSLKIDVGSEDDSILDAALRQGADLPYACKGGVCATCKCKLKAGEVDMAINYSLEPDQLAAGYVLSCQSWPRGEGVVLDFDV
>NZ_CP040182.1|WP_071680921.1|3680103_3680604_+|phenylacetate-CoA-oxygenase-subunit-PaaJ
MLNITRLQPAEIPQIWHCLQQISDPELPVLSITDLGMVRDVERDGAGWHITFTPTYSGCPATEYLLNAIEQTLNEAGFSPVKITISLSPAWTTDWMNADARQRLREYGVAPPQGQTCEKPLAHGPVQCPRCGSEHTEKISEFGSTACKALYRCCECREPFDYFKCI
>NZ_CP040182.1|WP_039996003.1|3679336_3680098_+|phenylacetate-CoA-oxygenase-subunit-PaaC
MTMSNAATISYALRLGDTPLILAQRLCAWCGHAPELEIDLALANIGLDLLGQARNFLAYAAELSGPQHSEDSLAFGRDEREFHNLLLAEQPNGGFNDTLVRQFLLDTYHVLLHRELSRSKDGQLAAIAAKSLKEADYHLRFSHGWMIRLGDGSEISHQKIQQSLNDLWRFTAELFHADEIELQLAELGIAVDPRQLQAPWQAMVNDTLQQATLALPTEQAFRHGGKQGRHTEHLGPMLAEMQFLPRAYPNCSW
>NZ_CP040182.1|WP_021180891.1|3679039_3679327_+|1,2-phenylacetyl-CoA-epoxidase-subunit-B
MTHAEWPLYEVFIRSKQGLAHRHVGSLHAADDQMALENARDAYTRRSEGCSIWVVQSCHLIASQAEDRAAFFDPSDDKIYRHPTFYTIPDGIKNM
>NZ_CP040182.1|WP_071680927.1|3688140_3689082_+|phenylacetic-acid-degradation-operon-negative-regulatory-protein-PaaX
MEHKLDDFIRHALSAQPISGTSLIISLYGDALSHRGGEVWLGSLSALLEALGFGDRFVRTSVFRLQKEGWLDVEKIGRRSYYRVTEQGMRQFRHAESKIYLSEQPQWDGKWELLLLESAEKTERARLKKELGWLGFGQIANNLMAAPTHAQTDVTALLGELNASEQVIYFRADYPYNRSEQTLRQMVANCWSLSEVAGYYHEFIVSFRPLMALLREADEQELTPLRCFQIKLLLIHFFRRVVLKDPLLPDALLPAQWEGQIARNLCINIYQRVDRAATEYVSALAETSIGTLPAPSAGYYRRFGGLPRDPTTF
>NZ_CP040182.1|WP_071680928.1|3689094_3689691_+|phenylacetic-acid-degradation-protein-PaaY
MPVYQIDGLTPVVDPSSYVHPTAVLIGDVIIGKGVYIGPNASLRGDFGRIVVEEGANVQDNCVMHGFPLQDTVVEQDGHIGHSAILHGCRVRRNAMIGMNAIIMDGAVIGENSIVGAGSFVKAAAEIGANQLVIGSPARVIRELTEQELAWKRTGTLQYQELVLRCKNSLKEVAPLSEPEPGRQRLNFGDHIIPKSQL
>NZ_CP040182.1|WP_059201139.1|3689720_3691124_-|amino-acid-permease
MKDAKRFDAIAQRQDGLKKHLTAGQMSMLAIGGAIGTGLFLGSAYAIQMAGPSVLLSYFIGGVIALLLMGCLAEMTSEHPTPGSFGDYAEFYLSPLFGFLVRYSYWSCVVLAVGTEVTAIGMYMQFWFPGTPIWPWVLLFSAAVIVVNVVGVKSFGQVEYALSTVKVVAISAFIMIGIGILAFSANPTFGIRNFTDNGGFFPFGVKGMWFAVIVSIFSYLSIEMIAVAAGEAKNPVVAVKSAFKGTILRLFIFYMMSIALMLAIVPWRQSGTGESPFLVAMNVIHLPAAAGIFNFVVLIAALSAMNSQLYITTRMMFSLSRAGQAPAALGRLSKRGIPVNALALSCVGIIVSIVLSIAAPEKSFAVMMSISVYGACFTWLMIFVTHLFFRRQHTQTHLKFRMWGYPYFTLAGALLMAGLMITTLFTDFFRMTLWFGIPFTALLVAIYFYSRRGQASVAAEAPVQSLE
>NZ_CP040182.1|WP_071680929.1|3691138_3692323_-|aspartate/tyrosine/aromatic-aminotransferase
MFAHITPSTPDPIMSLMEAYMQDPNPQKVNLGIGLYYDHQGNIPLMQAVHIAEQRLLEQQRPHTYPPIEGSALFARQIQTLLFGEPADRIATVQSVGGSGALKLGADFIYHYLARREIWVSDPTWANHWAIFEGAGLKVNTYPYFDDASGQLRLEAMLDMLSTLPEGAVVLLHPCCHNPTGTDLSPAQWHRVIDVVQQRRLLPFFDIAYQGFGDGLDEDCFALRAMLKTDVDFLVSNSFSKNVALYGQRLGGLSVRCATAEAAVNVKGALKTLIRRSYSCPPTHGSQIVETLLADPQLYQQWASELTTMRQRIKQMRVGLAAGLEQGGTTLDYTRIRDQKGMFSYTGLNERQLGQLRQQYSIYLVAPGRMCLPGLNQQNLDYVTAAILDVTRTA
>NZ_CP040182.1|WP_071680930.1|3692512_3692884_-|RidA-family-protein
MRTVIETGLPEIGQPFSWATKGGGMLFTAHGPVRQDGTIETGDPEKQITLTFDNLATTLKAANSHSDNVLQVIVYLTDVNDVKLLDKIYQQYFNYPYPNRSTVIVDKLVVPGMKIEITVSAVA
>NZ_CP040182.1|WP_071680931.1|3692867_3693683_-|alpha/beta-hydrolase
MKLLAGSYDNATTVADENEILLSFQSRSQRVYQQQRHELNMAYGDAPREVFDWFYSTEEYKGTIIFIHGGYWQFCDKQDFAFIASMPLSLGFDVVLVEYTLAPAANLADICQQIGGALDVIERRLKPRGDKPVYLTGHSAGGHLAAYWQHHPLVQAVFPISGIFELQPLLASYVNQQLKLTTQQIEALSPARNIPLSLKPMVLFYGAAELPELIGQSLYYYSALRAQGLPVSRYALPGANHYSVLDAVFAADGALHRFLLTDGEYLDAHSH
>NZ_CP040182.1|WP_071680932.1|3693907_3694813_-|LysR-family-transcriptional-regulator
MDRLDELAIFVAVIQQGSLAGAARKLRRSAPAVTRAIASLEQRLGARLVERTTRRLAPTEAGLRLAERARALLHDYQDAVMDTAEAQLSGLLRITSPVQFGRKHVAPMVMAFLERYPQIHIDMQLNDRNLELIDEGLDVAVRIGHLQDSSKVARKLGEVTRITVASPAYLAQRGVPLEPAQLSDHDTIVGTLRPTSGEWRFGPNENGERVRLTPRLLLNEVETQLLAVRAGKGIARLLSYQVADDLANGTLVRLLAAYEPQPVPVQLVANNVQYMPLKVRTFWDYAYQHLSQIAQIQPARP
>NZ_CP040182.1|WP_071680933.1|3694914_3695541_+|glutathione-S-transferase
MQTLKLYGTPASGHCHRVELLLRMLDLPYEYCEAPATVRQSEAFLRLNPVGQIPVLLADEQVLSDSNAIMVYLVKRYAPDSHWLPEDPLAAAQVQAWLSKAAGEVRYGPASCRMVVQFSAPENYPSAQAIGARFLPQLEQRLAEREFLATSLPTIADLACYSYVAVAPEGGLSLKSFPAIQRWLDRIAALPGFFPMPALPLPAQAVGQ
>NZ_CP040182.1|WP_071680934.1|3695542_3696466_+|pyridoxamine-5'-phosphate-oxidase
MSPSMFHPDEQLAQDLAGFDTVSGNIYTAMPDQHREFFAHLPYLFVATLDERQWPVATVFSGPAGFLRSPDEAHLRIVSPRRADDPAQAALYPGQPVGTLGLDFSNRRRNRVNGIISRTDKNRLEIVVQQSFGNCPQYIQRRELFAEPSVAAPIEQLSSLDDQARQQIQQADTCFVASYAHGDSAQGGVDISHRGGKPGFIHLAGETLWIPDFRGNRYMNTLGNLLAQPRAALLFIDFARGDILHLQGETQILWQAENEAVEGAERYWRFDITSAWRFRQALGWRGRNVEFSPATLRTGIWQNHAES
>NZ_CP040182.1|WP_021180872.1|3696640_3696865_+|YdcH-family-protein
MFPEYRELISHLKSSHPRFQSLFDKHNQLDHQISRLEGPAGNGYSDEVVRLKKEKLHIKDELHKILKAEEAAAK

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Crispr_ID: NZ_CP040182_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_7

4097026-4097120

Orphan

Consensus_repeat	Method
AAGTAAAGAGGTCATCTCAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040182_7

>merge|NZ_CP040182|7|4097026-4097120|CRISPRCasFinder
AAGTAAAGAGGTCATCTCAGCAACCATCCGATAAGGAGAGGGAGCTGTTAGTGTTAGCCCCTGCTCTGTTGGAAGTAAAGAAGTCATCTCAGCAA

>NZ_CP040182|7|7|4097026-4097120|CRISPRCasFinder
AAGTAAAGAGGTCATCTCAGCAA	CCATCCGATAAGGAGAGGGAGCTGTTAGTGTTAGCCCCTGCTCTGTTGG
AAGTAAAGAAGTCATCTCAGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_024530670.1\|4087631_4087955_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366
NZ_CP040182.1\|WP_021806021.1\|4094869_4095499_+\|GSH-dependent-disulfide-bond-oxidoreductase	unknown	unknown	gnl\|CDD\|172475
NZ_CP040182.1\|WP_081367129.1\|4091102_4091663_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_024485212.1\|4102883_4103384_-\|colicin-V-production-protein	unknown	unknown	gnl\|CDD\|182773
NZ_CP040182.1\|WP_024485210.1\|4099545_4100328_-\|histidine-ABC-transporter-substrate-binding-protein-HisJ	unknown	unknown	gnl\|CDD\|185334
NZ_CP040182.1\|WP_071684062.1\|4105095_4106361_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NZ_CP040182.1\|WP_071684057.1\|4088586_4089198_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040182.1\|WP_024485208.1\|4097268_4098042_-\|histidine-ABC-transporter-ATP-binding-protein-HisP	unknown	unknown	gnl\|CDD\|182592
NZ_CP040182.1\|WP_071684059.1\|4096061_4096967_+\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP040182.1\|WP_021178576.1\|4106516_4107425_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP040182.1\|WP_021178565.1\|4095657_4096035_+\|dihydroneopterin-triphosphate-2'-epimerase	unknown	unknown	gnl\|CDD\|183053
NZ_CP040182.1\|WP_021806023.1\|4098058_4098766_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185029
NZ_CP040182.1\|WP_039995290.1\|4104366_4105095_-\|cell-division-protein-DedD	unknown	unknown	gnl\|CDD\|236940
NZ_CP040182.1\|WP_021178572.1\|4101344_4102862_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP040182.1\|WP_071684058.1\|4089409_4091026_-\|heme-utilization-protein	unknown	unknown	gnl\|CDD\|376772
NZ_CP040182.1\|WP_071684056.1\|4086438_4087605_+\|oligogalacturonate-lyase	unknown	unknown	gnl\|CDD\|291262
NZ_CP040182.1\|WP_021178569.1\|4098762_4099449_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185089
NZ_CP040182.1\|WP_071684124.1\|4091883_4094376_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP040182.1\|WP_071684061.1\|4100625_4101198_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|235677
NZ_CP040182.1\|WP_071684055.1\|4084441_4086007_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_024530670.1\|4087631_4087955_+\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.12162e-51
NZ_CP040182.1\|WP_021806021.1\|4094869_4095499_+\|GSH-dependent-disulfide-bond-oxidoreductase	gnl\|CDD\|172475	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional.	2.70129e-105
NZ_CP040182.1\|WP_024485212.1\|4102883_4103384_-\|colicin-V-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	5.96786e-105
NZ_CP040182.1\|WP_024485210.1\|4099545_4100328_-\|histidine-ABC-transporter-substrate-binding-protein-HisJ	gnl\|CDD\|185334	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional.	3.25699e-143
NZ_CP040182.1\|WP_021806023.1\|4098058_4098766_-\|ABC-transporter-permease	gnl\|CDD\|185029	PRK15069, PRK15069, histidine ABC transporter permease HisM.	2.60077e-160
NZ_CP040182.1\|WP_024485208.1\|4097268_4098042_-\|histidine-ABC-transporter-ATP-binding-protein-HisP	gnl\|CDD\|182592	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP.	0
NZ_CP040182.1\|WP_071684059.1\|4096061_4096967_+\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	8.71973e-164
NZ_CP040182.1\|WP_021178576.1\|4106516_4107425_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP040182.1\|WP_021178565.1\|4095657_4096035_+\|dihydroneopterin-triphosphate-2'-epimerase	gnl\|CDD\|183053	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase.	1.62115e-79
NZ_CP040182.1\|WP_071684062.1\|4105095_4106361_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	0
NZ_CP040182.1\|WP_039995290.1\|4104366_4105095_-\|cell-division-protein-DedD	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	1.9259e-102
NZ_CP040182.1\|WP_021178572.1\|4101344_4102862_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP040182.1\|WP_071684058.1\|4089409_4091026_-\|heme-utilization-protein	gnl\|CDD\|376772	pfam02369, Big_1, Bacterial Ig-like domain (group 1). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.	3.99406e-11
NZ_CP040182.1\|WP_071684057.1\|4088586_4089198_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.82064e-06
NZ_CP040182.1\|WP_021178569.1\|4098762_4099449_-\|ABC-transporter-permease-subunit	gnl\|CDD\|185089	PRK15135, PRK15135, histidine ABC transporter permease HisQ.	2.02642e-141
NZ_CP040182.1\|WP_071684124.1\|4091883_4094376_-\|hypothetical-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.26361e-151
NZ_CP040182.1\|WP_071684061.1\|4100625_4101198_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	1.4272e-125
NZ_CP040182.1\|WP_071684055.1\|4084441_4086007_-\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	5.43042e-98
NZ_CP040182.1\|WP_071684056.1\|4086438_4087605_+\|oligogalacturonate-lyase	gnl\|CDD\|291262	pfam14583, Pectate_lyase22, Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.	0

>NZ_CP040182.1|WP_071684059.1|4096061_4096967_+|TIGR01777-family-protein
MKILITGATGLIGSSLTRQLLHLSHEITLLTRNVAKARDKFGDRLSYWASLDEQRSLDGFDAVINLAGEPIADKRWSKAQKELLCRSRWDLTERLATLIAASNTPPSVLISGSAVGYYGDQGQAVVTEEEPPHDEFTHQLCQRWEALALRAQSSYTRVCLLRTGVVLSPKGGALAKMLPPFRMGLGGPIGNGRQYLPWIHIDDMVNAIIYLLDNPPLRGPFNMVAPYPVHNEQFTATLAKVLDRPAFLRAPAFAMRLLMGEAAVLVLGGQRAVPRRLEEAGFVFRFFELEQALDDVINQQA
>NZ_CP040182.1|WP_021178565.1|4095657_4096035_+|dihydroneopterin-triphosphate-2'-epimerase
MPCQQPDAIIRIKNLRLRTFIGIKEEEINNRQDVLINVAIHYPADKARNSEDISDALNYRTITKAIIRHIEDNRFALLEKLTQDVLDIVKQHPWVTYAEVEIDKLLALRYADSVSMTMSYRRETA
>NZ_CP040182.1|WP_021806021.1|4094869_4095499_+|GSH-dependent-disulfide-bond-oxidoreductase
MIDLYYAPTPNGHKITLLLEEVGLPYRIHRVNISAGDQFTPAFLAISPNNKIPAIVDQQPVDGGAPISLFESGEILLYLAEKTGKLLSKGVRERAATLQWLFWQVAGFGPMLGQNHHFNHYAPQPVPYAIERYQQETKRLYGVLETELQRHPYLGGDNYSIADIATYPWVVSHPRQRIDLADYPAVRNWFERIRNRPATERAYKLADQA
>NZ_CP040182.1|WP_071684124.1|4091883_4094376_-|hypothetical-protein
MDELKKVNQFRSFSKPFNQLGSGDEIDIPTAASLRLKNQQAEASPAVPPPQHNERLAHGLLKGTTLLADDNTPLAAAGMARSMVVGEINDSAQHWLSSYGTARVQLNLNDDFSLEGSSVDLLVPLYDDKKSLLFSQLGMRNQDSRNTVNLGAGVRTVQDNWMYGVNAFFDRDMTGKNDRVGFGVEAWTDYLKLSANSYLALTDWHQSRDFADYNERPANGYDLRAEAYLPAYPQLGGKLMFEQYRGDEVALFGKDDRQKNPYAITAGITYTPIPLITIGAEHRAGKGSRNDSNISMQLNYRLGESWQAQIDPSAVAASRTLAGSRYDLVERNNQIVLEYQKQTLIQLALPDQMTGSAFETIKVDAQVTAKYGLERIDWDSTSLVAAGGKVIQTSSQSISLKLPPFMAGNNNYTLAAVAYDNQGNASNRSTTQIVVTQQNVSRVNSNIQASPAEIPADGAAKSVITLNLKDLNNFPIQGMGDQLTADLQFTPNMGAAQPISNPLLSAVTETAPGVYTYQLTAGFSQGEAIIAPTLNDISLASAKVNLIASSQVLSLENSLFSVEPAEIIADGLQTSTLEFTAQDTNHQPINGLTVAFEVTGIPEVTLSAVTENNGVYSAKLSGTVAGTVTVVPTVNGAAVEMKSHDVVLTADRSAATIELRVISDHAYANGVDVNKVEARVTDSHGNPIDATAVEFEVDNGATVLSPTARTDNEGLVTVELANVNAGVVTVTASIGDYQVSTEISFVPETPVKLLIYSNSTELTGHPVVGDNLLAVAMCSIALCNGIPMNYQWEVESSAGSGVFVAIPGATSETLTVTANLQKRAIRVVSH
>NZ_CP040182.1|WP_081367129.1|4091102_4091663_-|hypothetical-protein
MTQSTIVSDNASGNGLIDIGDTLSIGIAGAFSDADGDAAIPETYQWQADGADIAGATGNTYTIVAGDLGKAITVLVTPHTDPAITDPAIGLVVPSNTLTVIAGGTVTGVTVTGEVGGYPQVDSTLTATATCAGGTCTGLTYQWQLETGQGTNTYSNISGATSSTYTPVRTDQRLRVQVVVSNPAAQ
>NZ_CP040182.1|WP_071684058.1|4089409_4091026_-|heme-utilization-protein
MLHRNNIFKVFVFRILLVLIVMMSQVVQAVQQSTQPVHGRAPTTTLSVDNAKPRAGEVITVTSSFNDVDGDTEQGTTYQWMLDGAAINGATSPSYTLELSDILAGSELNVIVTPQTNPDITIPSEGLPVQLASPINIKWQRMLSSLVWAESPLGAVADGLAVNTVHATVQYLDGTPVVGATVLFDADNTGAISASAQTGIGGEATAYVTNVIAGTTQVTARIDDDVQSVNTLFVAGPVEVVHAEVTQDNALANGIDDNNVLVYVEDRHGNSIEGETVNFTATNGVTLLATSGVTDSNGEVKIVLTSDTAVNSDVTATTANGISATVNVAFFADVQMTHILANGASFSADDGFPKTGFTGAEFQLVVGEDPAGNSSYSWSSDQSWASVDGSGNVRFNQEPTSANNRVTITAEHTGNGSTLTYQFTVNRWFRNNSYFLMEPSEAAAWCSSQGGGYAVPSYSEMTDRTPIAQTGANRDANARLWNEWGSMSRYSSGWFAGNYWVRELTAAGNERHYVYLGNGNLFSFPLDGVTYVTCSTSL
>NZ_CP040182.1|WP_071684057.1|4088586_4089198_+|response-regulator-transcription-factor
MPDIHIFTVSNDRYFSAGLHALLRHGETLPHNKIALHELPFEKETFEAHTLSELKNSACDFLILDCSCGFINYYGACSALYAALEQGKLEARIILMYENSLCLTNPDMYNHFITLDKNACVEDILLAIFPPQTAQDEFDAEVEEATSRQYLTGRELIVINEIYSGAQPYEIAKKLKLRLKTINCYKNRAMKKICSKRPQDLHP
>NZ_CP040182.1|WP_024530670.1|4087631_4087955_+|cupin-domain-containing-protein
MFIYKQDCALEDLGSGVTRRILAHGGTMMAVEVNFSQGAVGPLHSHPHEQLTYVLSGRFSFTIDGVTKEVAAGDTLYKKPDVVHGCVCLEAGTLLDTFTPQREDFLK
>NZ_CP040182.1|WP_071684056.1|4086438_4087605_+|oligogalacturonate-lyase
MAKGSIHQFNFHRATDAGTGAQLTRLTPPEVLCHRNYFYQKCFTNDGSKLLFAGEFDGNRNYYLLDLQLQQAVQLTEGPGDNTFGGFLSPDDRFLYYVKNERELRRVELSNCTEQTVYRVPEEWVGYGTWVANSECTSLVGIEIDREDWQPLTDWKIFHSFFTKNPHCRLLRVDLASGESRVIYEDRLWLGHPIYRPYHSDCVAFCHEGPHDLVDARMWLINEDGSNMRKVKTHAPGESCTHEFWVPDGSALMYVSYLKGQQERNICRYDPQTGQDEIVMTMPACSHLMSNYDGSLLVGDGSATPVDIKDSQGYTIENDPWLYVFDAKQKRQARLAAHNSSWRVLNGDRQVTHPHPSFTPDNRQVLFTSDFEGEPALYLARLPEDLFA
>NZ_CP040182.1|WP_071684055.1|4084441_4086007_-|MFS-transporter
MTTNGINALGKGRTVRLGHQLAYGGGNLLGSGALAISGAWLLYFYTTFCGLTLLEASFIFSVASVIDAISNPVMGYLTDNFGNTWLGKRFGRRRFFLLIGAPLMVFYPLLWVEGFGFWYYLATYVIFELIYTSVMVPYETLATEMTDDFAMRSKLTGYKAIFGKMANFLAAFIPGQFILLYGKESAQPFLYTGITYGVILFTAITVLYLFSWERKDEAIAEVKHKKSLLKTLASLARDMQSTFYLRVFRKHLGMYLFGFGAEWLFASVFTYFVIFVLQYDPAILAGLNSLNAILQLISTAIFIGLCVKKGFSKPYSWALGIVMFAVCCYSLLHFFNLPAHIATAAIIGITVIFGLGTGGVYYIPWTVYTFLADVDEVFTGRRREGIYAGAMTFSGKIMRSIIVFTMGAILSYYGFQSKSHTQPETAITAISWVFFAGVILLALMAIVFSSQMTLNRQTHQVVLYEVARIKAGGKIGDIKPDVRLVIEKLVGLPYEQCWGNSKICQKMNITPEVSTPVYKPA
>NZ_CP040182.1|WP_024485208.1|4097268_4098042_-|histidine-ABC-transporter-ATP-binding-protein-HisP
MPEQKLAVTELHKRYGDHEVLKGVSLAANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGTISLNNENIRMVRDKDGQLRVFDKKQLQLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKAEARERAVRYLDKVGIDARAQIKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQKLAEEGKTMVVVTHEMEFARHVSSHVIFLHQGLIEEQGPPAELFGNPKSPRLQQFLSGALK
>NZ_CP040182.1|WP_021806023.1|4098058_4098766_-|ABC-transporter-permease
MIDILHQYWQQLLWTDGYRYTGVAVTLWLLISSVVMGGLLAIPMAVARVSSIRWVRYPVWLYTYVFRGTPLYVQLLVFYSGMYSLEIVRGTELLNAFFRSGMNCTILALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKLYRCIILPSALRSALPAYSNEVILMLHSTALAFTATVPDLLKVARDINAATYQPFYAFGIAAVLYLIISYTLISLFRRAEKRWMAHVTHR
>NZ_CP040182.1|WP_021178569.1|4098762_4099449_-|ABC-transporter-permease-subunit
MLQGYSQLIFEGALVTLELALSSVLLAVVIGLIGAGGKLSQNPVISTIFGAYTTLIRGVPDLVLMLLIFYGLQIALNHVTEFIGFSQIDIDPLGAGIITLGFIYGAYFTETFRGAYLAVPRGQIEAATAFGFSNGQIFRRILFPAMMRFALPGIGNNWQVILKATALVSILGLNDLVKATQLAGKGTYQPFFYAIVAGLVYLLFTTISNGVLLWLERRYSLGVKRAEL
>NZ_CP040182.1|WP_024485210.1|4099545_4100328_-|histidine-ABC-transporter-substrate-binding-protein-HisJ
MKKLVKVLPLVLALSAVSSAFAALPSTLKIGTDPTYAPFESKNAQGQLVGFDIDLATELCKRINTKCIFVESDFDALIPSLKAKKIDAIISSLSITEKRQQEIAFTDKLFAANSRLIAPKGSKILPTVDALKGKSIGVLQGTTQEAFANANWQPKGVTVVPYQNQDLVYADLASGRIDAAFQDEVAASEGFLKQPPGKEYEFAGESVKDDKFFGVGTGMGLRKDETELKAALDKAFAEMRKDGTYDKFAKKYFDFDVYGG
>NZ_CP040182.1|WP_071684061.1|4100625_4101198_-|UbiX-family-flavin-prenyltransferase
MKRLIIGISGASGAIYGVRLLQVLRGVEEVETHLVMSNAARQTLALETSLSLRDVQALADVVHDARDIAASISSGSFKTMGMVILPCSIKTLSGIVNSYSDGLLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEMGAVIMPPVPAFYHRPQTVDDIIDQTVNRVIDQFDIELPQDLFTRWQGIN
>NZ_CP040182.1|WP_021178572.1|4101344_4102862_-|amidophosphoribosyltransferase
MCGIVGIAGFMPVNQSIYDALMVLQHRGQDAAGIVTIDAHNGFRLRKANGLVKDVFEARHMLRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPFGITLAHNGNLTNAHELRQQLFERGRRHVNTTSDSEILLNVLATELDRFPHYPLESDNIFTAVAAMHQQLRGAYACVAMIIGHGLVAFRDPNGIRPLVIGKRELEDGRCEYMVASESVALDTLGFDFLRDVAPGEAVYITEKGQLFTRQCAENPKTNPCLFEYVYFARPDSFMDKISVYSARVRMGQKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILDKPYRQGFVKNRYVGRTFIMPGQQARRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIVEMARDAGAKRVYLASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLDDLIAAVREENPDIAQFECSVFNGIYVTKDVDQSYLEYLETLRNDDAKALRGQTEAENLEMHNEG
>NZ_CP040182.1|WP_024485212.1|4102883_4103384_-|colicin-V-production-protein
MVWIDYVIIALIGFSALVSLIRGFVREALSLVTWGCAFFVASHFYPYLAAYFTRFEDELVRNGIAIAILFIATLIVGAIVNYVIGSLVEKTGLSGTDRVLGVCFGALRGVLIVAAILFFLDTFTTLSQSADWKQSQLIPQFSYIIRWFFDYLQSTSSFLPTQLPGR
>NZ_CP040182.1|WP_039995290.1|4104366_4105095_-|cell-division-protein-DedD
MASKFQNRLVGTVILVALGVIVLPGLLDGKKKHYEDEFAAIPLVPKPGDAHEIDVIPPANQALPSVPPEGAGALVEQQQAAAEASAQQAANQTTQPQQPAVVAPPPIETKPVQPTKPKPVEVKPVEVKPKPVPTPPKVEPKPEVKPEPKPETKPAVEEKAPVGQAYVVQLGALKNAAKVNEIVASLRLSGHRAYTVPSTPVQGEITRIYVGPDASKQKLQASLAELNGISGLSGQVKAYSAR
>NZ_CP040182.1|WP_071684062.1|4105095_4106361_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MQNHQIPQATSPLSSWLYYLERLHSQAIELGLERVQHVAAHLDLLTPAPTVFTVAGTNGKGTTCRTLEAILLAAGLRVGVYSSPHLVRYTERVRIQGEELSEAEHSRSFAAIEAGRGETSLTYFEFGTLSALQLFKQARLDVVILEVGLGGRLDATNIVEPSVAVVTSIALDHTDWLGHDRESIGREKAGIFRGGKPAVVGEPDMPHSIQQVAEDLNAQLYRRDEAWSFSEQGERWQWEGGGTRLTDLPMPNVPLANAATALAALHYSVLEIDEKAIFAGLQQAALPGRFQTVQQNPQLILDVAHNPHAAAYLAGRLAKLPRNGGVVRAVVGMLSDKDIAGTLACLSEQVDEWYCAPLEGPRGASVELLAQYLTEPRKFADVETAWRQAMQDADIQDIVIVCGSFHTVAHVMAALDERRGV
>NZ_CP040182.1|WP_021178576.1|4106516_4107425_-|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta
MSWIERILNKSNVTQTRKVSIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMSARMRLHTLLDEGSEVELGSELEPKDVLKFKDSKKYKDRLVAAQKATGEKDALVVMKGTLYGMPIVAASFEFAFIGGSMSSVVGARFVRAVEQALEDNCPLVCFSASGGARMQEALMSLMQMAKTSAALAKLQERGLPYISVLTDPTMGGVSASLAMLGDINIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPVMRQTLASILSKLTNQPQPHFDEAAPVIAQENQADA

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Crispr_ID: NZ_CP040182_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_8

4960949-4961032

Orphan

Consensus_repeat	Method
GTGTTGCGGCCCGCAACAGGCACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040182_8

>merge|NZ_CP040182|8|4960949-4961032|CRISPRCasFinder
GTGTTGCGGCCCGCAACAGGCACTTGCCTATCAATAACGCCCAATCAATAGGTATCAGGGTGTTGCGGCCCGCAACAGGAACTT

>NZ_CP040182|8|8|4960949-4961032|CRISPRCasFinder
GTGTTGCGGCCCGCAACAGGCACTT	GCCTATCAATAACGCCCAATCAATAGGTATCAGG
GTGTTGCGGCCCGCAACAGGAACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_071681170.1\|4953039_4955853_-\|conjugative-transfer-ATPase	unknown	unknown	gnl\|CDD\|274761
NZ_CP040182.1\|WP_071681157.1\|4967570_4967882_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378704
NZ_CP040182.1\|WP_071681162.1\|4961053_4961791_-\|TIGR03747-family-integrating-conjugative-element-membrane-protein	unknown	unknown	gnl\|CDD\|163459
NZ_CP040182.1\|WP_071681171.1\|4952674_4953043_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071681163.1\|4960480_4960798_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|162489
NZ_CP040182.1\|WP_071681169.1\|4955852_4956242_-\|TIGR03751-family-conjugal-transfer-lipoprotein	unknown	unknown	gnl\|CDD\|274764
NZ_CP040182.1\|WP_071681161.1\|4961804_4963856_-\|type-IV-conjugative-transfer-system-coupling-protein-TraD	unknown	unknown	gnl\|CDD\|274767
NZ_CP040182.1\|WP_071681197.1\|4965633_4966206_-\|TIGR03759-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274770
NZ_CP040182.1\|WP_071681156.1\|4967878_4968205_-\|DUF3085-domain-containing-protein	unknown	unknown	gnl\|CDD\|371450
NZ_CP040182.1\|WP_071681199.1\|4957715_4958627_-\|TIGR03749-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|371799
NZ_CP040182.1\|WP_071681167.1\|4958636_4959305_-\|TIGR03746-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|163458
NZ_CP040182.1\|WP_071681159.1\|4965034_4965655_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP040182.1\|WP_071681155.1\|4968280_4969207_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071681165.1\|4959689_4960064_-\|TIGR03745-family-integrating-conjugative-element-membrane-protein	unknown	unknown	gnl\|CDD\|274762
NZ_CP040182.1\|WP_071681168.1\|4956255_4957719_-\|TIGR03752-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274765
NZ_CP040182.1\|WP_071681198.1\|4964492_4965032_-\|integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|378552
NZ_CP040182.1\|WP_071681166.1\|4959308_4959677_-\|TIGR03750-family-conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|378783
NZ_CP040182.1\|WP_071681164.1\|4960251_4960488_-\|TIGR03758-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|163470
NZ_CP040182.1\|WP_071681160.1\|4963848_4964496_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP040182.1\|WP_071681158.1\|4966414_4967302_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237015

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_071681170.1\|4953039_4955853_-\|conjugative-transfer-ATPase	gnl\|CDD\|274761	TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves. [Mobile and extrachromosomal element functions, Plasmid functions].	0
NZ_CP040182.1\|WP_071681162.1\|4961053_4961791_-\|TIGR03747-family-integrating-conjugative-element-membrane-protein	gnl\|CDD\|163459	TIGR03747, conj_TIGR03747, integrating conjugative element membrane protein, PFL_4697 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	3.75206e-98
NZ_CP040182.1\|WP_071681161.1\|4961804_4963856_-\|type-IV-conjugative-transfer-system-coupling-protein-TraD	gnl\|CDD\|274767	TIGR03754, conj_TOL_TraD, conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.	0
NZ_CP040182.1\|WP_071681163.1\|4960480_4960798_-\|hypothetical-protein	gnl\|CDD\|162489	TIGR01690, ICE_RAQPRD, integrative conjugative element protein, RAQPRD family. This model represents a small family of proteins about 100 amino acids in length, including a predicted signal sequence and a perfectly conserved motif RAQPRD towards the C-terminus. Members are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae DC3000. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	3.46881e-22
NZ_CP040182.1\|WP_071681169.1\|4955852_4956242_-\|TIGR03751-family-conjugal-transfer-lipoprotein	gnl\|CDD\|274764	TIGR03751, conj_TIGR03751, conjugative transfer region lipoprotein, TIGR03751 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	2.5494e-55
NZ_CP040182.1\|WP_071681157.1\|4967570_4967882_+\|hypothetical-protein	gnl\|CDD\|378704	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term. The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.	0.00444628
NZ_CP040182.1\|WP_071681197.1\|4965633_4966206_-\|TIGR03759-family-integrating-conjugative-element-protein	gnl\|CDD\|274770	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	2.69984e-83
NZ_CP040182.1\|WP_071681156.1\|4967878_4968205_-\|DUF3085-domain-containing-protein	gnl\|CDD\|371450	pfam11284, DUF3085, Protein of unknown function (DUF3085). This family of proteins with unknown function appears to be restricted to Proteobacteria.	4.16254e-21
NZ_CP040182.1\|WP_071681199.1\|4957715_4958627_-\|TIGR03749-family-integrating-conjugative-element-protein	gnl\|CDD\|371799	pfam11920, DUF3438, Protein of unknown function (DUF3438). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 276 to 307 amino acids in length.	6.96939e-124
NZ_CP040182.1\|WP_071681167.1\|4958636_4959305_-\|TIGR03746-family-integrating-conjugative-element-protein	gnl\|CDD\|163458	TIGR03746, conj_TIGR03746, integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	6.68141e-106
NZ_CP040182.1\|WP_071681159.1\|4965034_4965655_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.8892e-09
NZ_CP040182.1\|WP_071681165.1\|4959689_4960064_-\|TIGR03745-family-integrating-conjugative-element-membrane-protein	gnl\|CDD\|274762	TIGR03745, conj_TIGR03745, integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	1.42901e-29
NZ_CP040182.1\|WP_071681168.1\|4956255_4957719_-\|TIGR03752-family-integrating-conjugative-element-protein	gnl\|CDD\|274765	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	1.64271e-179
NZ_CP040182.1\|WP_071681198.1\|4964492_4965032_-\|integrating-conjugative-element-protein	gnl\|CDD\|378552	pfam11072, DUF2859, Protein of unknown function (DUF2859). This is a bacterial family of uncharacterized proteins.	1.12736e-60
NZ_CP040182.1\|WP_071681166.1\|4959308_4959677_-\|TIGR03750-family-conjugal-transfer-protein	gnl\|CDD\|378783	pfam11990, DUF3487, Protein of unknown function (DUF3487). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.	2.79818e-32
NZ_CP040182.1\|WP_071681164.1\|4960251_4960488_-\|TIGR03758-family-integrating-conjugative-element-protein	gnl\|CDD\|163470	TIGR03758, conj_TIGR03758, integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	1.30279e-07
NZ_CP040182.1\|WP_071681160.1\|4963848_4964496_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	1.16412e-22
NZ_CP040182.1\|WP_071681158.1\|4966414_4967302_-\|hypothetical-protein	gnl\|CDD\|237015	PRK11901, PRK11901, hypothetical protein; Reviewed.	0.000447458

>NZ_CP040182.1|WP_071681163.1|4960480_4960798_-|hypothetical-protein
MPIIRRGAAMLAGTLLLCSLPTFASEQAELGLVLSQLTQMEAALARARAQATQDSQHRFFFDYRRAEADIGLLRQGIEQYLTPSRAQPQPDGPLAGQYRREHPHE
>NZ_CP040182.1|WP_071681164.1|4960251_4960488_-|TIGR03758-family-integrating-conjugative-element-protein
MNDDQTNAWLAGAGGVSPELVAKLVYGALWGVFLLMSIWMMVSLYRCWAAGNVTKATGKWVMVRWAILASLVLFFFFS
>NZ_CP040182.1|WP_071681165.1|4959689_4960064_-|TIGR03745-family-integrating-conjugative-element-membrane-protein
MFVSFITPFPRLIVRACGVVASTLALLFALPALAELPTVERPQSGTGTGFWGNLTGYIQDGLVLGGLVLAAAALLMVGTAALTTFNEVRGGKAEWGKFIAIVVVGIALIVLIIYLADQAANILV
>NZ_CP040182.1|WP_071681166.1|4959308_4959677_-|TIGR03750-family-conjugal-transfer-protein
MARTTLENTPDGLNAEPVVVRGFTAAEMFWTTGLGAVLGLLVGVVPGLLLSWVYIPISGLLNIIVSFIIGGRILAHLKRGRPDNFLYRRLEVRLTRWGGGNPRLVLQGQSWASQRPITLTQE
>NZ_CP040182.1|WP_071681167.1|4958636_4959305_-|TIGR03746-family-integrating-conjugative-element-protein
MSRYKNALTLRDYHILSLRLACGALALVCVVAMVGWMRVPSQLTIHNPPDLRSGSTRLWWEIDPSTVYGFAFYVFQQLNSWSTNGQKDYPDKIDMLTHYLTPACKIWLKGDARSRDLRGESSERVRTVAEIPGRGVADVYRDEQGTPMPRVKIFGRDNWVVTLDLVIDEYYQSEKVKRSLTRFPLKVVRWAGDPELNPFGLALDCYDGLPQRLEAAVAAEEK
>NZ_CP040182.1|WP_071681199.1|4957715_4958627_-|TIGR03749-family-integrating-conjugative-element-protein
MKLAPLYLALLLPVCQVSQVWAVELMRWERIPLPVPLTVGQERIVFADRNVRVGFPASLNGKLRIQSTGGAVYLQASAPFDTTRVQLKDMATGELVLIDLSAVDGQTVREPVRLVYSGEVTASTEADAGRVTGTALSSETPSATPGQASRTAVSKTPVPVALTRYAAQRLYAPARTVEALPGVRSVAVSLPSSLTTLLPAQPVTVTPLTAWQLGAYRVVALKLTNRSGQRVTLDPRQLQGQFYSATFQHAWLGGAGTPEDTTSLYLVTTGRPEVAFVPEPAVNAQTSKANTATPAEKTRGGGA
>NZ_CP040182.1|WP_071681168.1|4956255_4957719_-|TIGR03752-family-integrating-conjugative-element-protein
MKIRSNTVLKGVVPGVILLAVIIGVVATRDRGAPAAGAAQTLLADLTPDELKVLGIEGDTPQDTLRTLLGRMRTLQEAQTEQSKQLNQSMADKEKDNTALRQQQTAQEARIGDLLAQIDDNSKRQNARWQEAEKSLLGKVNDLLGDSGRQPASPGNDLPVGLGFDGTTGLLAAGSDGVVWIDPQDAVALDKNGRPVTAENASVFPSSFGSLEDNAINQGRKQLVEHATGRRDIESATPVYTLPQNSTLMGSVSMTALIGRVPINGKITDPYPFKVVIGRDNLTANGIDLPEVEGAILSGTATGDWVLSCVRGEVTSMTFVFTDGTVRTVPAPADSTTQRDNGEQSGSGSQGGGIGWLSDPNGIPCLAGDRKTNAGTYLPTLFGLAGAQAAANALSASQVTSSTEAGAVTSALTGSSGQYVLGQALSGGTSEAADWFRQRYGQMFDAVYVRPGTPVAVHISRQLPIDYETQGRKVRYDTDPAVTGELD
>NZ_CP040182.1|WP_071681169.1|4955852_4956242_-|TIGR03751-family-conjugal-transfer-lipoprotein
MKRLLLSLLLPVLLTGCSTSKEEMLPAGEQSMMDVWQQKSGGAGALTDARAQLRRPLETLPAGHQESYTRTAHTETVSQFPRLPNPDLVMYIFPHLSGNEPAPVPGYSTVFPLYSKVQYALPGERLEEL
>NZ_CP040182.1|WP_071681170.1|4953039_4955853_-|conjugative-transfer-ATPase
MKNPFTFRQSAGKYPDELRPTVEGHECLRRGDGPQLTERQHEKLYETSPSFIQFLPWTEFLTDGDCLLLDDGRSVGAVYEVIPVSTEGRPLTRLEEIRDVVEDALQDAPDELADNPWVIQFYCQDESDVDTWLDTLRGYVKPWAQGTAFTEAWLGEMARHYRGINRSDGLFEDQQVTGLPWRGIQRRTRMVVYRRTGSKENGRLSPVEHLNQVCGRLVAALAGGEIRCERQNGAQIHAWLLRWFNPDPPFDPAAFAVGARYCDPTPKRPGDLPLLPVDFAESLLFTSPRSDVENAVWWFDNRPHRVVMVEKLREVPAVGHLTGERKSGKHHRALLDGMPEGTTLMLTLVVADQDGIRDHFARLAKSAVGDSTAARETRQRLREVTPQHSTAHKIYRSSLGFYLSAPDLATLEQRNLALESVLLNHQLQPVRPEHEVAPLNTWLRWLPMCFDPASDKKHWYTQLQFVQHLAHLVPLYGRASGTGHPGYSFFNRGGGLVTFDPLTKQDRQENAHMLILGPTGAGKSATATGMFAQLMAIYRPRMVVVEVGNSFGPFGDYCKTLGLTVNKVSIKPGSGVSLAPFADAHRLLALNPVIDGSDLPDLTEGDDDEDSERDIMGEMEIIARLMITGGEPAEEALMTRANRGMLREAIMMAAKTTHEAQRQMLPEDLRDALNALARDTSLDSRGQPMRSPQMRERAADMAAAMSLFTSGFDGEVFNRPGDPWPEADLTIVDLGVFARENYQAQMAVAYISLMNRVNAIAERDQYEDRQIVMPTDEAHVITTNPLLSPYVTKITKMWRKLGAWLWLLTQNMKDFPDAAERMLNMCEWWLCLVMPPNEVEQIARFKTLTDEQRLMLLSASKQDRAYTEGVVLSARLQTLFRVVPPSLYLALAMTEKDEKAERRALMEAHGITELEAVVRVARALDVKRGIMPAEEGR
>NZ_CP040182.1|WP_071681171.1|4952674_4953043_-|hypothetical-protein
MSARTPTRLFETPLQGRVELNAAMVAPLATFCDQIRARLGRVMAASGVPQRVNEHNSLALTLEGNNGQTVYILIAVSGQVAWPQPADYRTTARWVVHVRDTVDALALVGALVTQLELGSLLA
>NZ_CP040182.1|WP_071681162.1|4961053_4961791_-|TIGR03747-family-integrating-conjugative-element-membrane-protein
MAEAQTQRAPQSGPAKNPGLLSRLLWHWPLGLMGVLLASLFLSLVFEYLGMVFLWPEEGMRHSQQMLVRELEFLSVGFTRSLLHSAPVETGHAVIRQLAQWLLVDSGVSEWRHRGQQLGASALQAWGGWLYGLLQDYLLASVYVCLTFVVRLMILTLSLPLFVLALLVGLTEGLVRRDLRRFGAGYESSFIYHHAKRSIKTALYTPWLLYLSLPFTVYPNLILLPAAAWLGLAVCVTTATFKKYL
>NZ_CP040182.1|WP_071681161.1|4961804_4963856_-|type-IV-conjugative-transfer-system-coupling-protein-TraD
MSDRHVMEALLRPAVELQSAAVAASAAAVCVMAPWSVALAPSLSVGASACFGVFAVVRARQGFRILKYRRNLRRLPHYALKSHQIPVSHRRLFLGKGFRWQQRHTQRLLTCLRPEVEHYVTPSAFYQAVRRFERRFEHQLPTLTRLTAQDSRFNPARPLPPVGGSPLLHGIELDEEEVSTPLSERVGHMLVLGTTRVGKTRLAEVLVTQDIRRGDPTFVLDPKGDPELLIRMYTEAKRAGREFYMFHLGWPELSARYNGIGRFGRITEVASRVTSPLSGEGTSAAFKEFSWRFVNIIAQTLVAMGRRPDYSNIEHYVRNIDELFECYAEYYLVQHAPTQWESIKNLAQLVDPSRLPSHMEGRSQLCVALEQFLSTEEGRLHDDLILSGLRSSVRYDRKYYDKIVASLLPLLEKLTSGKVAQLIAPDYLDMNDSRPIFDWEDAIRKKAVVYVGLDALSDTEVAAAVGNSMFADLVSVAGKIYKHGLGDGLPPGAETGMRVCLHGDEFNELMGDEFIPLINKGGGSGIQVTAYTQTLADIEAKIGNAAKAHQVVGNFNTLMMLRVKEKDTAILLTDQLPEVEVFTTTLISGATDASSQDNDQHFTSNTQDRVSTVRVPMVTPDQVMSLPKGQAFALLEGGQLWKIRMPLPAKEHDPQMPSSLLAVADSMQKHYRTGETWWLSATV
>NZ_CP040182.1|WP_071681160.1|4963848_4964496_-|restriction-endonuclease
MSDTLVFLAWHPFLVGMSVLFVVVMLVVGRGVRRGSSRHRRYQRQAARVLVRLPQLSGDAQRLVYLRSINPYVFEELLLTALARRGHRILRNVRYSGDGGIDGQVWLNGQRYLIQAKRYANAIIPAHVSALNILAREHGCRGLFVHTGRTGPKSRALLRDFPAITLLSGSRLLTLLNSEQAWSLNENDTSRSSTSPAQDNAACQHESVVNGDAHE
>NZ_CP040182.1|WP_071681198.1|4964492_4965032_-|integrating-conjugative-element-protein
MTLLRCFSWLLANLIVLPAAAGLTVIADLGGVSTAPYFESLAVEEGNSAPSASELRSPISPAAPSLSGPVTSESMLPVRSRVLTPGAVNVRNVELPGMTPLFLIGDDDLSHRWLAARLSVLQQLGATGLVVNVESVGAWRALQARAPGLTLSPVSGDDLARRLGLTHYPVLITAERIEQ
>NZ_CP040182.1|WP_071681159.1|4965034_4965655_-|transglycosylase-SLT-domain-containing-protein
MDPRSLLIPVLPVMSLLALLWLPAAHSSVAASSHIPQGYRTVASQHQVPAEVLFAVALAESGRTVNKVTVPWPWTLNVAGKSYRYATRAEGCQALTRFMRTHPLKRIDVGLGQTNLGYNGHHYRSACEAFEPYDNLNATARILRDCYRQRNGSWLDAAACYHRPAGGAPAKTYRAIVQRHLNRLMATSSHIPAAPTSLAWVTPKES
>NZ_CP040182.1|WP_071681197.1|4965633_4966206_-|TIGR03759-family-integrating-conjugative-element-protein
MVEWGVTESEWHRYEQLMQGRRGQQSPNLDPLMVLGIEAQSAEERKRFAELSVQMEYRRVEAELAFQREYDAAWKRLYPNILPIQGMGSSVAQGERLAVFVRSDCGDRCDKAITGLLNRNVAFDVYLTDSGGSDALVRQWAVSHRIPVEKVKAGDITLNHDGGRWLTMGNGAMPAVLKQGEGGVWIPAAY
>NZ_CP040182.1|WP_071681158.1|4966414_4967302_-|hypothetical-protein
MSQPESLLPVSPIIESERPDNQLKDPAPSRQAESVAPSTAGPRAFLSVPARQRLYQGVRYGVLALLVVMVGVQSVRQQAQQQQLMELESALVARLPAGLSASVKSLHQQVLSLEARPQVLPAELVSRTDWQAGIDTQQRDTRAALEMFRGQLQQQAGVQETQAQSLHTLQGTLSDLETRIKAASASQSHPATASSSAKPTANPTTALKTAATSKTPSSPASASTRQPVPFMLTGIETRGGQPFAVVAPPTGQGLTQLQLVALGGSVQGWRLVGIEGRQARFLPPNSTQTRVLTPQ
>NZ_CP040182.1|WP_071681157.1|4967570_4967882_+|hypothetical-protein
MPVLPAELAQLLTAQLTLLWQASVKQAETGALAAREQVDADIELTDLERDTAQTRVAELESELAVLREVVAERNWLLTEMRDQRTKKPRQHHGGALFLSSLIG
>NZ_CP040182.1|WP_071681156.1|4967878_4968205_-|DUF3085-domain-containing-protein
MLVFTARELIPVLQEAKDNQCDVLVVKDHGIYAMSDKGVMENEKRRVAYALGCDPDKDPDWHDRCREEAGGDDFGEVLCLTDGMVSRIRDKGVSLCITFTVTHMEITC
>NZ_CP040182.1|WP_071681155.1|4968280_4969207_-|hypothetical-protein
MSLSLIDFYIAHRFTALGLELDSEEIDWSFSESLRDYVNTRILFRGPRLLSVLARLLETLAEKPDNQEKCRKSDRYLRLWISGFETLYQQTQDAALLPFTHPVSSGRFDQLMRPDPVALSSLDEETYLKVTDQHRLPPAEQLSLGAFVATEPYWTRFMDYLAKQMADICQACFVRLSDFRLKSHVEPDRLRTFTVPLGRIEVIRHPQALGELDVDEFDQDYLALYVDQVADGLFTPVMLEARVLFSNGVILKTFTADVDVDNAQAIVSSDYREVMHDAIEWVREQFATPGVPNVVALPPARRVNAQAA

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Crispr_ID: NZ_CP040182_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040182_9

5017055-5017217

Orphan

Consensus_repeat	Method
CTTCGGTTTCCGAAGCCGG	PILER-CR
CTTCGGTTTCCGAAGCCGGG	CRT

3 spacers

The CRISPR arrays of NZ_CP040182_9

>merge|NZ_CP040182|9|5017055-5017217|PILER-CR,CRT
CTTCGGTTTCCGAAGCCGGTCATAAGCCACTGATTTCAGGCTGACTTCGGTTTCCGAAGGCGGGTGTTCTTTGCCTCCTGACTGCCCGTCTTCGGTTTCCGAAACCGGGGTTTTCCGCCGACTTCGGTGTCCACGTTGCCCTTCTTCGGTTTCCGATGCCGGG

>NZ_CP040182|9|2|5017055-5017216|PILER-CR
CTTCGGTTTCCGAAGCCGG	TCATAAGCCACTGATTTCAGGCTGA
CTTCGGTTTCCGAAGGCGG	GTGTTCTTTGCCTCCTGACTGCCCGT
CTTCGGTTTCCGAAACCGG	GGTTTTCCGCCGACTTCGGTGTCCACGTTGCCCTT
CTTCGGTTTCCGATGCCGG

>NZ_CP040182|9|1|5017055-5017217|CRT
CTTCGGTTTCCGAAGCCGGT	CATAAGCCACTGATTTCAGGCTGA
CTTCGGTTTCCGAAGGCGGG	TGTTCTTTGCCTCCTGACTGCCCGT
CTTCGGTTTCCGAAACCGGG	GTTTTCCGCCGACTTCGGTGTCCACGTTGCCCTT
CTTCGGTTTCCGATGCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040182.1\|WP_071682059.1\|5021875_5023246_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP040182.1\|WP_137751206.1\|5018592_5019147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071682058.1\|5019702_5020107_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071682061.1\|5027464_5027818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071682123.1\|5016225_5016447_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_081367030.1\|5020099_5021863_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP040182.1\|WP_081367026.1\|5006495_5007140_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285957
NZ_CP040182.1\|WP_071682054.1\|5017929_5018562_-\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP040182.1\|WP_081367031.1\|5023749_5024721_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP040182.1\|WP_137751207.1\|5023552_5023753_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_081367027.1\|5007155_5008283_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP040182.1\|WP_071682049.1\|5011750_5013439_-\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NZ_CP040182.1\|WP_039995582.1\|5025484_5026099_+\|YagU-family-protein	unknown	unknown	gnl\|CDD\|226008
NZ_CP040182.1\|WP_071682057.1\|5019458_5019683_-\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274123
NZ_CP040182.1\|WP_081367029.1\|5013452_5013932_-\|type-IV-pilus-biogenesis-protein-PilM	unknown	unknown	gnl\|CDD\|369356
NZ_CP040182.1\|WP_071682052.1\|5015983_5016229_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071682047.1\|5009808_5010054_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040182.1\|WP_071682048.1\|5010483_5011743_-\|type-4b-pilus-protein-PilO2	unknown	unknown	gnl\|CDD\|369114
NZ_CP040182.1\|WP_081367028.1\|5010053_5010518_-\|type-IV-pilus-biogenesis-protein-PilP	unknown	unknown	gnl\|CDD\|274394
NZ_CP040182.1\|WP_137751258.1\|5013889_5015074_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378468

Protein	Function_ID	Function_description	E-value
NZ_CP040182.1\|WP_081367030.1\|5020099_5021863_-\|hypothetical-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	1.15346e-119
NZ_CP040182.1\|WP_081367026.1\|5006495_5007140_-\|hypothetical-protein	gnl\|CDD\|285957	pfam08805, PilS, PilS N terminal. Type IV pili are bacterial virulence-associated adhesins that promote bacterial attachment to host cells. In Salmonella typhi, the structural pilin protein PilS interacts with the cystic fibrosis transmembrane conductance regulator. Mutagenesis studies suggest that residues on an alpha-beta loop and the C terminal disulphide-bonded region of PilS might be involved in binding specificity of the pilus.	3.288e-20
NZ_CP040182.1\|WP_071682054.1\|5017929_5018562_-\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	1.57598e-49
NZ_CP040182.1\|WP_081367031.1\|5023749_5024721_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.90034e-28
NZ_CP040182.1\|WP_081367027.1\|5007155_5008283_-\|hypothetical-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	2.2395e-12
NZ_CP040182.1\|WP_071682049.1\|5011750_5013439_-\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	1.04303e-146
NZ_CP040182.1\|WP_071682057.1\|5019458_5019683_-\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|274123	TIGR02419, kDa_protein_in_gpA_5'region, phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions].	2.64786e-15
NZ_CP040182.1\|WP_081367029.1\|5013452_5013932_-\|type-IV-pilus-biogenesis-protein-PilM	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	3.43713e-47
NZ_CP040182.1\|WP_071682059.1\|5021875_5023246_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP040182.1\|WP_039995582.1\|5025484_5026099_+\|YagU-family-protein	gnl\|CDD\|226008	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown].	1.19469e-77
NZ_CP040182.1\|WP_071682048.1\|5010483_5011743_-\|type-4b-pilus-protein-PilO2	gnl\|CDD\|369114	pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body. This family does not seem to be related to pfam04350.	2.18511e-65
NZ_CP040182.1\|WP_081367028.1\|5010053_5010518_-\|type-IV-pilus-biogenesis-protein-PilP	gnl\|CDD\|274394	TIGR03021, pilP_fam, type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP. [Cell envelope, Surface structures].	1.90746e-20
NZ_CP040182.1\|WP_137751258.1\|5013889_5015074_-\|hypothetical-protein	gnl\|CDD\|378468	pfam10671, TcpQ, Toxin co-regulated pilus biosynthesis protein Q. The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ, and the TcpQ is required for proper localization of TcpC to the outer membrane. The domain is found in other Proteobacterial species apart from Vibrio.	1.70226e-19

>NZ_CP040182.1|WP_071682123.1|5016225_5016447_-|hypothetical-protein
MCHARRPGRVAYAPREFIELLIIREWQRWQQQSATLGVCRHCGKAKLDGGCLGEYQGNSTACWLTYDCREVFL
>NZ_CP040182.1|WP_071682052.1|5015983_5016229_-|hypothetical-protein
MMMRVARNVPAEVVSNAEQALALLQSGETLPAHYRYQRCTCPGGWFEVVRLRQYRLVRRRGASRWELMTHQTYNKLRVAKS
>NZ_CP040182.1|WP_137751258.1|5013889_5015074_-|hypothetical-protein
MLGPVKLQEALQILAGPAWYLVVDDVSRQVCYRLREGYSVPVAPTAVAPIPALPPLTTPLALAPSTAVSTPLPVTPVSSVGTPVSALPAPELASTSDRLLSPSTLPFTPPTLQVVKYLGKAEGVEIRQGRGQGALASVLKQIAPTGWEVVLSADIATAAKGNTFHWQGGDRWTHVLDTLLKSQQWMALVNWQNHRISVAALPGVLSVAYQAAGVQAATAPIKADNATSVPVMPPSVPATAIVPTPATPNSTPDVTTGKSSTLMGKPATPAVVTPIVPSASTSSTSAVPAVFTPGPALMTSPVGKAWAATVGATLRESVTRWAQDAPCQSGGQWVVIWPTRLDYRIDAQLTFHGPFEDVLSQLFELYRQADKPLFVAANRLQCLVHVDDKPQVTR
>NZ_CP040182.1|WP_081367029.1|5013452_5013932_-|type-IV-pilus-biogenesis-protein-PilM
MPGACGRQTPGDTLMGAWLLSCALVLSLVVASIDGRLGERVRQKASVGDSAQRAAQMVTLVNAINDHLYHTPQTQGPVSLAVLGLTFTPDPRIEHVLQDGRLWVFTPEVSGLVTALRQHTRHSALICTVTNGRLLTLAGEDMNQTLPASVAEGDVVILN
>NZ_CP040182.1|WP_071682049.1|5011750_5013439_-|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MSISHQNGPTRPLSVWVISLLALSVLSGCSLKTLNEREQETQQAGAQAQRLIKDMKHPRPAAVNWVDKPWINPRPITTASRPDAQDLPPCSLTLTINALSLHEFGQRISTLCGLPVTITADAASSAEGLGSRTITQQYTGAIPAPDDNGRVPLAMMGSGTSAFQPAIASAHINNLRWQGELSGLLDTVTSQLGLSWRVDTGRIVIYSLETRAFQLAVLNVRSSMRANVLSGTSASTGAEGGDASNSISGDASTSQTTSVEQASDLYDDIKKTVETMLTPERGRFFLSAASGTLTVTDTPSVLARVAEYIEHENAVLNKQVLLNVEVLSVSTSRSDQLGIDWSVVYASLGGVGASLTGAFSNASSNALSSGVSILDSASGGRGRFSGSSLLVRALSEQGNVAVVTSHSSATTNLTPVPVQIAEQTVYVARTSINTTANVGSSTTMEPGTITTGFNMTMLPFIQDSGDIQLQFSFNLSDSPTIRSIASTDGTTAMEMPYTKLRSLSQRVNLRDGQTLVLTGFEQTNTSANKEGTFTPGNFLFGGGRDADKKRTTLVVLITPVLM
>NZ_CP040182.1|WP_071682048.1|5010483_5011743_-|type-4b-pilus-protein-PilO2
MTTHNSTVLLEYGKITAVAGLQWQAVPTGRRGLARLTREKGRQVNRRVVCRGAQRQVAGFCALAGKTHRGSLYSLAMLALPTLGRNGYGVVDLDDGRQVFLATLDGCPAVMGDVVGSPSDIAAQLADFLAFNPDVDWRVVGTPAVPADWHSLLSAKPAASARLRTVHSRRPLLAGLLLAGVSVACYVAWDQWRQAQDAADLAARRAAFEASQQQQITDPAVPVLPHPWAAQLPASVFLAQCQQAWQQAPLSIAGWTLSGGECRSDGLRLGYDGSAGEPVDVFKARVDTLLGQQASFNLPAGGRSGEVFIALSHEASQLRDEVPPDADTQLLRVLTHLQRQGMATTFTEVAQIALAGQEPDAPPPIQEWREFTFTVSSTLPSATVFHPLADTGLRLARVTFTLTGGQLRYETEGHLYAYK
>NZ_CP040182.1|WP_081367028.1|5010053_5010518_-|type-IV-pilus-biogenesis-protein-PilP
MKPKDISMRTNNASFLPLLLLFGFVNAGAAPTTVGDLEQLTAQNVLLAAQLQGEQLQRQLRDSRNDGQANPPVPAVPALPGASTVVPAPVPKTAAGKVLEISGTGPRLSARVALADGSVLDVVPGQVFPGTGLTVKNLSVAGVTLSDGRVVGMH
>NZ_CP040182.1|WP_071682047.1|5009808_5010054_-|hypothetical-protein
MKQAAHIKEVREPGDVPALSALGFPAMPLQWIENMSRPEGLRFLSGTTGSGGRGARGNPLPAANVVFSDGCVVGGTDETVC
>NZ_CP040182.1|WP_081367027.1|5007155_5008283_-|hypothetical-protein
MRQPRRQPTQENIAMAESNTHAAFRWYCRVGFGAPDRVAFYESLGFLLMNNKPLRVALSDMRDVATDFGKKMHPLAILLTELMDALADNRAGHTFESVLAEWVPVEEAGLINAGLVAGMLPDALKRAIVLIEGRQRIKGAVVKATLYPLLLSGMAVAMLYTMAGKLIPQLEKLSDPTTWTGSMATLAALTGYLMQYGGVTLAGLMALLTLVFWSQPRLTGIVRHRVLDHCLPWSVYRDIQGAVFLLNVAALMRANLQTLPLLARLSQHASPWLRERLAATAERVGEGEHLGKALRNTGFDFPSRECVNQLYLLTDGDGAEDIMEKFGERWLDTTVKRVERRAVMLNGMAVLMLLSFFGLVMGAIFEIQSMADAAM
>NZ_CP040182.1|WP_081367026.1|5006495_5007140_-|hypothetical-protein
MCELSTRGDGELNVKYRGTLPERCVQKGVDRGWLSIEMAAVLLIVIIAVAAVAGMIAVNYARNDVSTEISNIQSIMANTRGLLKTQSGYNFTNASQMTGTLVQFKGIPTTMTINGTAASGTATLWNTWGGAVTLAPEKVGTATTNNGFILTYNAVPQEACGVLAVRLSKSGLVSEVRLNGTTNAGEVTATLAGTQCKADTGSTGTNVMIFKSNV
>NZ_CP040182.1|WP_071682054.1|5017929_5018562_-|DUF2857-domain-containing-protein
MTDESVSTPSGHSANALLMQLLLDIKRGHLSRCESMGLTMGDIRAINQLSFDDLQYLMSSEVCVVQMHVDRRLLSILLEQARRSRWTQQMIDRALLLGASMAMMREYFGLTTHVVATRRRLLDIEVQKGRSLTLNEAQEQQLWLSWRQLGAQPVDSLEGLDAMMILAERTGYSLTTVCNSLLQASGTLNVRISAARSCFPSAGLSEVAKR
>NZ_CP040182.1|WP_137751206.1|5018592_5019147_-|hypothetical-protein
MMRTDRQARVRALPSERRDELAASGALLCDLLSAGAQRAGLLLRQEVEQACEQLPDDAVFTLAEVRCLLSRSLDAVEHQLVSEHQALAGVSPDSPGVTLSGEALLRLCRFAGISLAPDSGSDTVRLPDSVTVYEGHRFSERGRTGRGIYACQPGHLTAGVVCLSGNTAMPQKVNQKITRIRRKA
>NZ_CP040182.1|WP_071682057.1|5019458_5019683_-|TraR/DksA-family-transcriptional-regulator
MDELDYLQAEVGARLHRQIEKARWRPVAPVSAVVCEDCGLAIPEKRRLALPGVQCCMDCQTINETMSGQYARRR
>NZ_CP040182.1|WP_071682058.1|5019702_5020107_-|hypothetical-protein
MFEYVCQHYGVPACLGREVMAYGQAGIIVKDLGHYIGVALVDDPRQQARPYHPVDGMVYGGMTEPAALPQLKAWRCLPPWKDCWFLDAASVFTVTTETRNKARYQAFLYLTQDCELELEREALLGIKVRRAGYR
>NZ_CP040182.1|WP_081367030.1|5020099_5021863_-|hypothetical-protein
MKPNLNVVDLQAKMMSGYLQRTTPAPAVSSLPAPGTGEVPLVLTLDELRPNPDNPRTQRNPRYADIKASIASRGLDSVPKVTKDPANPAFFIFSDGGNTRYAILQELWAETQDERFYRIACYVKPWPGRLMCLLGHLAENDLRGNLSFVERAKGVVSARELYEQENGQSLSLRALSERLRADGYAVHPSSIQRMEYTMTHLLPCLPALLYSGLGRTDIEKLITLRTTAEKTWQTLMAERSDSAPFGAIFSEICTSFDNEEAYSFEGFRAALTRQLQLKADKPELTYDHWLLALQGENVTPRGVTSGSVVSSIAPDERAHEALLPPLETAPVRDSLHGDTEEEVTAGTSGVSAPAPLANTHGSALTVPPSERVTAAPNPRVTDPRLESGYQEEQLPLAGETMSSPSSSLLPPLTPPDSGVLRSPIATPPALAPLLSATDDHDGDGLPFLPDEDVTLAFADSGLEPVSDIWAISPLQDDIEHLQGSAFRLAFELAEPFELGVLLVQDSDPASAGFKMQAGKDAIDQNNSPAWDWLNELSGQAMLLSLDFLLGTASESPAMSDFLMVKLMRLLRVLRRLRELQREENGHV
>NZ_CP040182.1|WP_071682059.1|5021875_5023246_-|replicative-DNA-helicase
MVKTSLPPIPTVQAVEPPHSMDVEQAVLGGLMLDNDRWDDVALILSETDFFSGTHRFIYRQMRALVENRQPIDLLTLSQTMEQLGEQHRVDFAYLAELSKNTPSAANIDAYAGHVARYAGLRQLQKIGLELTGRASLRTAEPEDVQAVAQAALEGVSAQYDPEGMADIPSLFEDVVGRVQELSASGGAHLSGVSFGLNELDKMTTGAQDGDLIIVAARPSMGKTAFGLGLGIAALETTSAPVQIYSLEMPKEQLMLRFIAILGKVPLQNLRSGAMSESDWERVASVAGKKIMDDWPERMLIDDTAGLSPSLLRTRARKARRQYGDPSLILVDYLQLMQVPELSHNRTLEISDISRSLKGLAKEMGCPVVALSQLNRGLESRADKRPKLSDLRESGAIEQDADLVMFIYRDEVYDEHTLDKGMAEIILGKQRNGPIGTVKASFIAEQARFASYDLGY
>NZ_CP040182.1|WP_137751207.1|5023552_5023753_-|hypothetical-protein
MKRLFRALIEPLKVATCTLCGCDDHHACINAVTQRPCHWLAVARKAGTGVCSECAAPQPKGGVPHG
>NZ_CP040182.1|WP_081367031.1|5023749_5024721_-|ParA-family-protein
METIVMHDINCASTKNTPHVVSFINTKGGGGKSTLTANTVGFLADAGLRVLGIDLDTQPSFTSYYQLTHEVPGGIYELLLNRDTRPDAVISQTNLPNFHLIKSNDPHDQLKNHLLAAPDGRLRLKQLIAAFSEYDAIVIDTQGAYSVLPQIATFASDIICCPTVPAISDAREFFRGTMSMFTEMQPLYQMLGLPLPSVKVGVNRMDPRNSKLDHEALRVISDMIATGFPGLEFPVEMLPFQITRLDVYNMGSKLGQPVHRLEPAPIADRKAPAASQIIYQLSCALFPEAEEPLTEYILSLETQTALHARGKGRATTATGEGMK
>NZ_CP040182.1|WP_039995582.1|5025484_5026099_+|YagU-family-protein
MNIFEQTPPNRRRYGLAAFIGLIAGIVSAFVKWGAEVPLPPRSPADMFTAACGPESLIRAAGQIDCSRNFLNPPYIFLRDWLGLADPNAAVYTFAGHVFNWVGVTHIIFSLVFAVGYCVVAEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDLPWYENVSEIFGHLIWFWSIEIIRRDLRNRITHEPDAEIPLGQNR
>NZ_CP040182.1|WP_071682061.1|5027464_5027818_+|hypothetical-protein
MSSNNFASLISVLHVSDFDKAVEWYAKWLGRKPDITPEEGIAEWQLVENALIQVSVAPDPSLVGKSFVVCGVRDIEVQMVVCQNAGVSVSETQDLGFIKLAQISDPAGNTVMFVQEM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040182_1	1.2\|1314303\|22\|NZ_CP040182\|PILER-CR	1314303-1314324	22	NZ_CP040182.1	1314203-1314224	0	1.0
NZ_CP040182_8	8.1\|4960974\|34\|NZ_CP040182\|CRISPRCasFinder	4960974-4961007	34	NZ_CP040182.1	5015683-5015716	0	1.0
NZ_CP040182_1	1.3\|1314362\|23\|NZ_CP040182\|PILER-CR	1314362-1314384	23	NZ_CP040182.1	1314243-1314265	1	0.957
NZ_CP040182_8	8.1\|4960974\|34\|NZ_CP040182\|CRISPRCasFinder	4960974-4961007	34	NZ_CP040182.1	5015624-5015657	1	0.971

1. spacer 1.2|1314303|22|NZ_CP040182|PILER-CR matches to position: 1314203-1314224, mismatch: 0, identity: 1.0

ctcttttgcaagtaaagaggtg	CRISPR spacer
ctcttttgcaagtaaagaggtg	Protospacer
**********************

2. spacer 8.1|4960974|34|NZ_CP040182|CRISPRCasFinder matches to position: 5015683-5015716, mismatch: 0, identity: 1.0

gcctatcaataacgcccaatcaataggtatcagg	CRISPR spacer
gcctatcaataacgcccaatcaataggtatcagg	Protospacer
**********************************

3. spacer 1.3|1314362|23|NZ_CP040182|PILER-CR matches to position: 1314243-1314265, mismatch: 1, identity: 0.957

taccctttcattcagcggtgctt	CRISPR spacer
taccctttcattcaccggtgctt	Protospacer
************** ********

4. spacer 8.1|4960974|34|NZ_CP040182|CRISPRCasFinder matches to position: 5015624-5015657, mismatch: 1, identity: 0.971

gcctatcaataacgcccaatcaataggtatcagg	CRISPR spacer
gcctatcaataacgcccaatcaataggtttcagg	Protospacer
**************************** *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040182_9	9.6\|5017164\|34\|NZ_CP040182\|CRT	5017164-5017197	34	MT024862	Microbacterium phage Alakazam, complete genome	34174-34207	10	0.706
NZ_CP040182_9	9.6\|5017164\|34\|NZ_CP040182\|CRT	5017164-5017197	34	NZ_MH061177	Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence	20012-20045	10	0.706
NZ_CP040182_9	9.3\|5017163\|35\|NZ_CP040182\|PILER-CR	5017163-5017197	35	MT024862	Microbacterium phage Alakazam, complete genome	34173-34207	11	0.686

1. spacer 9.6|5017164|34|NZ_CP040182|CRT matches to MT024862 (Microbacterium phage Alakazam, complete genome) position: , mismatch: 10, identity: 0.706

gttttccgccgacttcggtgtccacgttgccctt	CRISPR spacer
tgaacgcgccgacctcggtgtccacgtcgccgct	Protospacer
    . *******.*************.*** .*

2. spacer 9.6|5017164|34|NZ_CP040182|CRT matches to NZ_MH061177 (Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence) position: , mismatch: 10, identity: 0.706

gttttccgccgacttcggtgtccacgttgccctt	CRISPR spacer
cagtaccgtcgacttcggcgtccacgttgagatg	Protospacer
   * ***.*********.**********   *

3. spacer 9.3|5017163|35|NZ_CP040182|PILER-CR matches to MT024862 (Microbacterium phage Alakazam, complete genome) position: , mismatch: 11, identity: 0.686

ggttttccgccgacttcggtgtccacgttgccctt	CRISPR spacer
atgaacgcgccgacctcggtgtccacgtcgccgct	Protospacer
.    . *******.*************.*** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2170492 : 2178650

Escherichia_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071680806.1\|2170492_2171917_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-53	31.4
WP_071680805.1\|2171931_2173296_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	4.0e-34	27.8
WP_071680804.1\|2173430_2174453_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	6.8e-79	45.6
WP_071680803.1\|2175303_2176368_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.2e-104	54.3
WP_071680802.1\|2176382_2177252_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	4.0e-112	68.8
WP_071680801.1\|2177253_2177787_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.3e-60	63.1
WP_071680800.1\|2177786_2178650_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.1e-44	39.5

DBSCAN-SWA_2

2271971 : 2280787

Escherichia_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024529865.1\|2271971_2273264_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-93	52.4
WP_071680750.1\|2273526_2275980_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.3e-220	49.7
WP_071680749.1\|2276189_2278640_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	4.9e-224	50.5
WP_024529862.1\|2278650_2279268_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.9e-76	59.6
WP_071680748.1\|2279269_2280130_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	9.0e-24	33.1
WP_037412102.1\|2280178_2280787_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	7.5e-25	33.8

DBSCAN-SWA_3

2363583 : 2400511

Enterobacteria_phage(17.78%)

coat,integrase,terminase,holin

attL 2358490:2358502|attR 2373179:2373191

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2358490:2358502	attL	NA	NA	NA	NA
WP_071680706.1\|2363583_2364639_-\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	6.1e-107	51.5
WP_071680705.1\|2364580_2364832_-	hypothetical protein	C6ZCU6	Enterobacteria_phage	1.3e-10	51.5
WP_071680704.1\|2365287_2365503_-	hypothetical protein	NA	NA	NA	NA
WP_137751142.1\|2365484_2365718_-	hypothetical protein	NA	NA	NA	NA
WP_071680703.1\|2365746_2366322_-	hypothetical protein	J9RW52	Pseudomonas_phage	5.1e-07	32.8
WP_071680702.1\|2366318_2366663_-	hypothetical protein	NA	NA	NA	NA
WP_071680701.1\|2366664_2367141_-	hypothetical protein	A0A125RNQ8	Pseudomonas_phage	2.5e-07	39.4
WP_071680700.1\|2367137_2367329_-	hypothetical protein	NA	NA	NA	NA
WP_071680699.1\|2367350_2367689_-	hypothetical protein	NA	NA	NA	NA
WP_071680698.1\|2367685_2367910_-	hypothetical protein	NA	NA	NA	NA
WP_071680697.1\|2367899_2368154_-	hypothetical protein	NA	NA	NA	NA
WP_071680696.1\|2368153_2369041_-	DNA (cytosine-5-)-methyltransferase	A0A120HUM8	Bacillus_phage	4.8e-20	26.3
WP_071680695.1\|2369031_2369394_-	hypothetical protein	NA	NA	NA	NA
WP_071680694.1\|2369390_2369768_-	hypothetical protein	G3M144	Escherichia_virus	1.8e-45	66.7
WP_071680693.1\|2369778_2370045_-	hypothetical protein	NA	NA	NA	NA
WP_071680692.1\|2370074_2370476_-	hypothetical protein	A0A2I6PID1	Escherichia_phage	1.8e-43	84.0
WP_071680691.1\|2370475_2371081_-	ERF family protein	A0A088CQ15	Enterobacteria_phage	2.0e-62	65.3
WP_071680690.1\|2371225_2371432_-	hypothetical protein	NA	NA	NA	NA
WP_071680689.1\|2371685_2372744_-	cell envelope biogenesis protein TolA	A0A2I7R804	Vibrio_phage	1.8e-29	47.1
WP_137751143.1\|2373116_2373314_-	hypothetical protein	NA	NA	NA	NA
2373179:2373191	attR	NA	NA	NA	NA
WP_071680687.1\|2373607_2373859_-	hypothetical protein	NA	NA	NA	NA
WP_071680686.1\|2373861_2374185_-	hypothetical protein	Q9B030	Phage_GMSE-1	4.3e-11	37.0
WP_071680685.1\|2374551_2374962_-	hypothetical protein	A0A0P0ZDD3	Stx2-converting_phage	3.1e-38	58.9
WP_071680684.1\|2374958_2375648_-	transcriptional regulator	A0A0P0ZCT8	Stx2-converting_phage	4.3e-69	63.6
WP_071680683.1\|2375644_2375932_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.6e-46	92.6
WP_071680682.1\|2376085_2376736_-	helix-turn-helix domain-containing protein	F1C599	Cronobacter_phage	6.9e-69	60.6
WP_071680681.1\|2376814_2377003_+	hypothetical protein	A5VW97	Enterobacteria_phage	1.1e-11	57.4
WP_071680680.1\|2377141_2377438_+	hypothetical protein	K7P6Y2	Enterobacteria_phage	3.8e-22	62.1
WP_071680679.1\|2377449_2377863_+	hypothetical protein	G8C7U4	Escherichia_phage	2.4e-43	59.8
WP_081366970.1\|2377916_2378771_+	hypothetical protein	A5VW95	Enterobacteria_phage	1.1e-50	76.2
WP_071680678.1\|2378767_2379463_+	DNA replication protein	A0A2H4J1B6	uncultured_Caudovirales_phage	1.4e-67	57.9
WP_071680677.1\|2379459_2379675_+	hypothetical protein	NA	NA	NA	NA
WP_137751242.1\|2379701_2379893_+	hypothetical protein	A0A2P1CKR1	Pantoea_phage	2.5e-11	57.4
WP_071680675.1\|2379909_2380251_+	hypothetical protein	E5AGF3	Erwinia_phage	2.7e-08	38.8
WP_071680674.1\|2380243_2380525_+	hypothetical protein	NA	NA	NA	NA
WP_071680673.1\|2380521_2380722_+	hypothetical protein	NA	NA	NA	NA
WP_071680672.1\|2380846_2381308_+	hypothetical protein	A0A1V0E789	Klebsiella_phage	3.2e-20	61.6
WP_071680671.1\|2381311_2381590_+	DUF4752 family protein	A0A1R3Y5T8	Salmonella_virus	1.8e-05	31.3
WP_071680670.1\|2381573_2382023_+	recombination protein NinB	F1C5C7	Cronobacter_phage	3.1e-36	52.1
WP_071680669.1\|2382022_2382373_+	hypothetical protein	NA	NA	NA	NA
WP_071680668.1\|2382369_2382903_+	phage N-6-adenine-methyltransferase	M1FN83	Enterobacteria_phage	5.7e-61	64.9
WP_071680667.1\|2382899_2383073_+	protein ninD	C6ZR56	Salmonella_phage	8.6e-19	66.7
WP_137751144.1\|2383039_2383210_+	NinE family protein	Q5G8S3	Enterobacteria_phage	9.1e-05	46.6
WP_071680666.1\|2383206_2383617_+	hypothetical protein	NA	NA	NA	NA
WP_071680665.1\|2383731_2384433_+	serine/threonine-protein phosphatase	H6WZJ4	Escherichia_phage	1.9e-80	64.8
WP_071680664.1\|2384404_2385007_+	protein NinG	A0A1P8DTE0	Proteus_phage	4.9e-53	54.1
WP_071680662.1\|2385388_2385907_+	antiterminator	A0A192Y911	Salmonella_phage	3.1e-72	76.2
WP_071680843.1\|2386122_2386440_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	9.0e-22	44.9
WP_071680842.1\|2386493_2386763_+	hypothetical protein	NA	NA	NA	NA
WP_071680661.1\|2386765_2387158_+	M15 family metallopeptidase	E7C9S9	Salmonella_phage	1.0e-35	59.5
WP_071680660.1\|2387479_2388229_+	hypothetical protein	A0A077K9Y9	Edwardsiella_phage	2.0e-48	73.5
WP_071680659.1\|2388238_2388475_+	hypothetical protein	NA	NA	NA	NA
WP_071680658.1\|2388598_2388979_+	hypothetical protein	R9VYK9	Serratia_phage	3.5e-28	54.2
WP_071680657.1\|2388995_2389223_-	hypothetical protein	NA	NA	NA	NA
WP_071680656.1\|2389245_2389818_+\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	2.0e-64	77.5
WP_071680655.1\|2389814_2391374_+\|terminase	terminase	G8C7P3	Escherichia_phage	1.5e-274	83.6
WP_071680654.1\|2391379_2392759_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	3.2e-196	72.8
WP_071680653.1\|2392768_2393881_+	hypothetical protein	I6PD76	Cronobacter_phage	5.6e-119	57.5
WP_071680652.1\|2393985_2394750_+	hypothetical protein	G8C7P6	Escherichia_phage	1.9e-89	68.1
WP_071680651.1\|2394841_2395984_+\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	6.0e-92	48.2
WP_071680650.1\|2396032_2396227_+	hypothetical protein	NA	NA	NA	NA
WP_071680649.1\|2396230_2396623_+	protein singed	A0A0H5AUF0	Pseudomonas_phage	2.8e-09	40.8
WP_071680648.1\|2396624_2397014_+	glutamate 5-kinase	A0A059VA70	Pseudomonas_phage	7.9e-20	44.9
WP_071680647.1\|2397015_2397396_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	3.8e-27	46.7
WP_071680646.1\|2397392_2397785_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_071680645.1\|2397809_2398979_+	Ig domain-containing protein	A0A059VG08	Pseudomonas_phage	1.5e-58	42.7
WP_071680644.1\|2399029_2399479_+	hypothetical protein	NA	NA	NA	NA
WP_071680643.1\|2399598_2399796_+	hypothetical protein	NA	NA	NA	NA
WP_071680642.1\|2399971_2400511_+	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	1.8e-78	78.4

DBSCAN-SWA_4

2403607 : 2412987

Klebsiella_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071680640.1\|2403607_2403934_+	hypothetical protein	M1PRT9	Cellulophaga_phage	4.7e-34	73.1
WP_071680639.1\|2403981_2404503_+	hypothetical protein	NA	NA	NA	NA
WP_071680638.1\|2404576_2405083_-	hypothetical protein	S4TR57	Salmonella_phage	2.1e-12	38.1
WP_071680637.1\|2405118_2405358_+	hypothetical protein	NA	NA	NA	NA
WP_071680636.1\|2405465_2405933_+	hypothetical protein	A0A286S298	Klebsiella_phage	4.5e-46	54.0
WP_071680635.1\|2405929_2406412_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.1e-52	66.9
WP_071680634.1\|2406422_2406803_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.3e-59	82.5
WP_071680633.1\|2406799_2409868_+	kinase	A0A286S259	Klebsiella_phage	5.1e-295	51.4
WP_071680632.1\|2409925_2411755_+	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	2.9e-11	40.0
WP_071680631.1\|2411757_2412456_+	hypothetical protein	NA	NA	NA	NA
WP_071680630.1\|2412585_2412987_+	hypothetical protein	Q1MVE7	Enterobacteria_phage	2.5e-16	41.1

DBSCAN-SWA_5

2712651 : 2755942

Escherichia_phage(23.08%)

protease,integrase,coat

attL 2743785:2743802|attR 2765023:2765040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021804630.1\|2712651_2713197_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_071680453.1\|2713260_2713779_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_071680452.1\|2713790_2714315_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_071680451.1\|2714333_2715131_+	molecular chaperone	NA	NA	NA	NA
WP_071680450.1\|2715149_2717672_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_137751243.1\|2717689_2718640_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_071680448.1\|2718643_2720080_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_071680447.1\|2720248_2722882_-	PqiB family protein	NA	NA	NA	NA
WP_071680831.1\|2722850_2724098_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_021178215.1\|2724338_2724836_+	GAF domain-containing protein	NA	NA	NA	NA
WP_021804621.1\|2724931_2725645_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_071680446.1\|2725664_2727713_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	7.0e-83	34.0
WP_071680445.1\|2727979_2728858_+\|protease	protease HtpX	NA	NA	NA	NA
WP_071680444.1\|2728945_2730337_-	MFS transporter	NA	NA	NA	NA
WP_059200604.1\|2730565_2731357_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_071680441.1\|2733310_2734225_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_137751149.1\|2734340_2735738_-	L-cystine transporter	NA	NA	NA	NA
WP_071680439.1\|2735916_2736465_-	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	3.7e-07	33.1
WP_071680438.1\|2736689_2737451_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	8.8e-15	29.8
WP_021804612.1\|2737662_2738328_-	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_021178205.1\|2738541_2739102_+	membrane protein	NA	NA	NA	NA
WP_071680437.1\|2739141_2740011_-	fructosamine kinase family protein	NA	NA	NA	NA
WP_071680436.1\|2740449_2741307_-	metal ABC transporter permease	NA	NA	NA	NA
WP_071680435.1\|2741306_2742170_-	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_021178200.1\|2742169_2743060_-	manganese/iron ABC transporter ATP-binding protein	A0A1V0SKJ1	Klosneuvirus	2.5e-08	27.7
WP_071680434.1\|2743056_2743995_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
2743785:2743802	attL	NA	NA	NA	NA
WP_071680433.1\|2744124_2744424_-	type V toxin-antitoxin system endoribonuclease antitoxin GhoS	NA	NA	NA	NA
WP_021178197.1\|2744533_2745196_+	transglycosylase SLT domain-containing protein	I6ZXX9	Escherichia_phage	5.0e-06	34.3
WP_071680432.1\|2745503_2746229_+	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
WP_071680431.1\|2746231_2748016_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_137751150.1\|2748012_2749368_+	cytochrome c	NA	NA	NA	NA
WP_071680430.1\|2749504_2750488_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	2.6e-112	60.6
WP_071680429.1\|2750575_2750875_-	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	5.3e-32	66.7
WP_071680428.1\|2750995_2751280_+	hypothetical protein	Q1JS60	Enterobacteria_phage	1.2e-33	71.1
WP_071680427.1\|2751461_2751962_+	replication protein B	M1SV55	Escherichia_phage	7.2e-66	69.3
WP_071680426.1\|2752025_2752298_+	DUF2732 family protein	NA	NA	NA	NA
WP_071680425.1\|2752300_2752525_+	hypothetical protein	Q9ZXI6	Pseudomonas_virus	3.1e-08	41.9
WP_071680424.1\|2752647_2752920_+	DUF5405 family protein	A0A0M4R2Q0	Salmonella_phage	1.0e-21	51.1
WP_071680423.1\|2752916_2753639_+	Dcm methylase	A0A1V0E7C5	Klebsiella_phage	3.1e-78	60.4
WP_071680422.1\|2753635_2755942_+	replication endonuclease	S4TTC1	Salmonella_phage	1.3e-266	60.1
2765023:2765040	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2760512 : 2796000

Escherichia_phage(31.03%)

tRNA,terminase,lysis,tail,capsid,plate,portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071680416.1\|2760512_2761544_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	5.9e-163	79.8
WP_071680415.1\|2761540_2763313_-\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	2.3e-292	83.4
WP_071680414.1\|2763477_2764323_+\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	7.5e-108	70.5
WP_071680413.1\|2764385_2765537_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	1.1e-154	77.2
WP_071680412.1\|2765540_2766287_+\|terminase	terminase	Q6K1I5	Salmonella_virus	7.2e-70	63.6
WP_071680411.1\|2766379_2766886_+\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.2e-60	70.8
WP_071680410.1\|2766885_2767089_+\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	7.0e-20	68.7
WP_071680409.1\|2767091_2767301_+	hypothetical protein	B6SD15	Bacteriophage	1.7e-05	46.4
WP_071680408.1\|2767284_2767794_+	lysozyme	A0A218M4K3	Erwinia_phage	2.1e-60	71.9
WP_071680407.1\|2767790_2768231_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	2.5e-22	48.2
WP_071680406.1\|2768311_2768779_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	4.5e-62	74.2
WP_071680405.1\|2768771_2769224_+	phage virion morphogenesis protein	O80313	Escherichia_phage	3.5e-51	73.3
WP_071680404.1\|2769666_2770371_+	hypothetical protein	NA	NA	NA	NA
WP_071680403.1\|2770655_2771297_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.6e-81	70.9
WP_071680402.1\|2771293_2771641_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.5e-41	71.9
WP_071680401.1\|2771646_2772555_+\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	1.0e-126	77.5
WP_071680400.1\|2772547_2773075_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	5.2e-75	73.4
WP_137751151.1\|2773088_2775335_+	hypothetical protein	Q858V4	Yersinia_virus	4.1e-60	55.0
WP_071680399.1\|2775337_2775763_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	3.8e-23	43.5
WP_071680398.1\|2776043_2777213_+\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	2.7e-188	82.1
WP_071680397.1\|2777227_2777749_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.0e-75	76.7
WP_071680396.1\|2777812_2778109_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	7.1e-29	78.2
WP_071680395.1\|2778123_2778261_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.5e-15	80.0
WP_137751152.1\|2778253_2780701_+\|tail	phage tail tape measure protein	U5N0T4	Enterobacteria_phage	2.2e-176	48.6
WP_071683685.1\|2780714_2781200_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	7.5e-52	66.9
WP_071683684.1\|2781196_2782375_+	phage late control D family protein	S4TRX8	Salmonella_phage	2.7e-148	71.3
WP_071683683.1\|2782449_2782668_+	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	1.8e-21	65.3
WP_071683682.1\|2783515_2784400_+	PHP domain-containing protein	NA	NA	NA	NA
WP_071683681.1\|2784630_2785914_+	HAAAP family serine/threonine permease	NA	NA	NA	NA
WP_021178152.1\|2785948_2786635_-	MarC family NAAT transporter	NA	NA	NA	NA
WP_071683680.1\|2786707_2788072_-	MATE family efflux transporter	NA	NA	NA	NA
WP_071683679.1\|2788163_2788754_-	DUF2239 family protein	NA	NA	NA	NA
WP_024530019.1\|2789059_2790988_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.8e-131	37.9
WP_071683678.1\|2790991_2791543_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.2e-16	33.7
WP_004931418.1\|2791640_2791838_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004963673.1\|2791881_2792238_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_137751153.1\|2792258_2792402_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_021804595.1\|2792614_2793598_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.6e-35	38.5
WP_071683677.1\|2793612_2796000_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA

DBSCAN-SWA_7

3884462 : 3891819

Pectobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071681038.1\|3884462_3884783_+	hypothetical protein	A0A1W6JPH4	Morganella_phage	1.5e-16	47.1
WP_071681039.1\|3884796_3885057_-	hypothetical protein	NA	NA	NA	NA
WP_071681040.1\|3885053_3885548_-	hypothetical protein	H9C162	Pectobacterium_phage	1.8e-21	44.7
WP_071681137.1\|3885699_3885942_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.3e-09	46.4
WP_071681041.1\|3886043_3886307_+	excisionase	A0A1V0E5M4	Salmonella_phage	8.8e-15	63.4
WP_071681042.1\|3886744_3887215_-	hypothetical protein	NA	NA	NA	NA
WP_021178442.1\|3887526_3887769_+	DinI family protein	K7PKM2	Enterobacterial_phage	3.6e-31	87.3
WP_071681043.1\|3888040_3888964_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071681044.1\|3889129_3890545_+	M20 family metallopeptidase	NA	NA	NA	NA
WP_071681045.1\|3890541_3891819_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.7e-72	39.1

DBSCAN-SWA_8

4521838 : 4538661

Enterobacteria_phage(27.27%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071683963.1\|4521838_4522576_+	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	7.1e-54	43.2
WP_071683964.1\|4525129_4530871_-	DUF1983 domain-containing protein	E4WL39	Enterobacteria_phage	1.6e-286	55.7
WP_071683965.1\|4530928_4531552_-\|tail	tail assembly protein	A0A1W6JNY8	Morganella_phage	8.7e-53	54.0
WP_071683966.1\|4531548_4532259_-	peptidase P60	M9NZD8	Enterobacteria_phage	1.5e-80	55.7
WP_071683967.1\|4532261_4533014_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	2.5e-86	57.0
WP_024486957.1\|4533022_4533364_-\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	1.5e-14	40.2
WP_071683968.1\|4533642_4535925_-\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	1.3e-93	31.5
WP_071683969.1\|4535982_4536237_-	hypothetical protein	I6PD79	Cronobacter_phage	1.1e-17	63.6
WP_081367120.1\|4536284_4536638_-	hypothetical protein	G8C7Q5	Escherichia_phage	4.2e-28	54.3
WP_059201585.1\|4536709_4537372_-\|tail	phage tail protein	I6PBN6	Cronobacter_phage	1.2e-71	63.1
WP_071683971.1\|4537603_4538008_-	hypothetical protein	NA	NA	NA	NA
WP_021807641.1\|4538295_4538661_-	phage antitermination protein Q	B6SCY2	Bacteriophage	4.6e-30	55.0

DBSCAN-SWA_9

5178254 : 5217231

Escherichia_phage(21.43%)

tRNA,terminase,lysis,tail,capsid,plate,portal,integrase,head

attL 5184409:5184456|attR 5218011:5218058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071682897.1\|5178254_5179268_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.2e-109	58.9
WP_001144069.1\|5179592_5179808_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_071682896.1\|5179945_5181694_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-74	38.4
WP_021179483.1\|5181851_5183690_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_071682895.1\|5183739_5184228_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
5184409:5184456	attL	NA	NA	NA	NA
WP_071682894.1\|5184626_5184845_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.6e-22	63.9
WP_071682893.1\|5184916_5186092_-	phage late control D family protein	Q6K1G4	Salmonella_virus	1.3e-150	70.3
WP_071682892.1\|5186088_5186574_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	2.8e-51	66.9
WP_137751213.1\|5186589_5189037_-\|tail	phage tail tape measure protein	U5N0T4	Enterobacteria_phage	7.4e-172	47.2
WP_071682559.1\|5189029_5189167_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-14	77.8
WP_071682560.1\|5189181_5189478_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	9.3e-29	80.0
WP_071682561.1\|5189540_5190062_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	4.0e-75	76.2
WP_071682562.1\|5190077_5191247_-\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	4.1e-189	82.9
WP_071682563.1\|5191527_5191953_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	3.8e-23	43.5
WP_137751214.1\|5191955_5194202_-	hypothetical protein	Q858V4	Yersinia_virus	4.1e-60	55.5
WP_137751215.1\|5194215_5194743_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	8.9e-75	73.4
WP_071682565.1\|5194735_5195644_-\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	4.3e-125	76.8
WP_071682566.1\|5195649_5195997_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	5.6e-41	71.1
WP_071682567.1\|5195993_5196635_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	5.9e-89	75.1
WP_071682568.1\|5196706_5197159_-	phage virion morphogenesis protein	O80313	Escherichia_phage	4.1e-52	74.7
WP_071682569.1\|5197151_5197619_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	5.9e-62	74.2
WP_071682570.1\|5197699_5198140_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	3.1e-20	46.0
WP_071682571.1\|5198136_5198646_-	lysozyme	A0A218M4K3	Erwinia_phage	2.9e-62	72.5
WP_021178175.1\|5198629_5198839_-	hypothetical protein	B6SD15	Bacteriophage	5.0e-05	46.4
WP_071682572.1\|5198841_5199045_-\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	1.1e-20	70.1
WP_071682573.1\|5199044_5199551_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	8.3e-62	72.0
WP_071682574.1\|5199643_5200390_-\|terminase	terminase	Q6K1I5	Salmonella_virus	2.7e-69	63.2
WP_071682575.1\|5200393_5201545_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	4.7e-153	76.6
WP_071682576.1\|5201607_5202453_-\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	2.6e-108	70.9
WP_071682577.1\|5202617_5204390_+\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	1.1e-286	81.3
WP_071682578.1\|5204386_5205418_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	6.3e-165	81.0
WP_071682579.1\|5205752_5206895_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	9.3e-77	43.5
WP_071682580.1\|5206894_5207617_+	hypothetical protein	A0A0R6PER3	Moraxella_phage	2.6e-16	28.3
WP_071682581.1\|5207592_5208639_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	6.0e-115	59.9
WP_071682582.1\|5208730_5208943_-	hypothetical protein	A0A218M4I0	Erwinia_phage	2.4e-15	78.2
WP_071682583.1\|5209231_5211547_-	replication endonuclease	S4TTC1	Salmonella_phage	3.6e-269	60.7
WP_071682584.1\|5211543_5212266_-	Dcm methylase	A0A1V0E7C5	Klebsiella_phage	3.6e-82	63.4
WP_071682585.1\|5212262_5212535_-	DUF5405 family protein	A0A0M4R2Q0	Salmonella_phage	3.2e-20	46.7
WP_071682586.1\|5212657_5212882_-	hypothetical protein	Q9ZXI6	Pseudomonas_virus	3.1e-08	41.9
WP_071682587.1\|5212884_5213157_-	DUF2732 family protein	NA	NA	NA	NA
WP_071682588.1\|5213224_5213725_-	replication protein B	M1SV55	Escherichia_phage	3.3e-63	68.1
WP_071682589.1\|5213904_5214414_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	4.6e-76	86.4
WP_071682590.1\|5214445_5214667_-	regulator	NA	NA	NA	NA
WP_071682591.1\|5214784_5215369_+	phage repressor protein CI	F1BUS8	Erwinia_phage	1.4e-31	39.7
WP_071682592.1\|5215370_5216156_+	hypothetical protein	M1PL51	Streptococcus_phage	7.0e-07	28.5
WP_071682593.1\|5216205_5217231_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.5e-115	61.5
5218011:5218058	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040182

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection