CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP027930	Microbacterium sp. SGAir0570 plasmid pSGAir0570_2, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP027929	Microbacterium sp. SGAir0570 chromosome, complete genome	4 crisprs	csa3,DEDDh,WYL,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027929_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027929_1

60103-60384

Orphan

Consensus_repeat	Method
CCGTCGGCGAGCTGGTTCGCGCCGTCG	CRISPRCasFinder

3 spacers

WYL

The CRISPR arrays of NZ_CP027929_1

>merge|NZ_CP027929|1|60103-60384|CRISPRCasFinder
CCGTCGGCGAGCAGGGCGGCGATGTCCGTCCGCACCTGCGGGAGCTGCCCCGCAGCCTCATCGACGGCCGCGCGAACGCGATCGGCGTAGCCGGCGAGCTCGGCCGTGCCGTCGGAGACCTGGGCCGCGCCCGACGCCAGATCGGACGAGCCCTGAGCCAGGGTGCGGGTGCCGTCGGCGAGCTGCGACGCACCGTCGGCGAGCTGGTTCGCGCCGTCGCGCAGCTGCACGGCACCGCTCGAGAGCCGCCCGGTGCCGTCGGCGAGCTGGTTCGCGCCGTCG

>NZ_CP027929|1|1|60103-60384|CRISPRCasFinder
CCGTCGGCGAGCAGGGCGGCGATGTCC	GTCCGCACCTGCGGGAGCTGCCCCGCAGCCTCATCGACGGCCGCGCGAACGCGATCGGCG
TAGCCGGCGAGCTCGGCCGTGCCGTCG	GAGACCTGGGCCGCGCCCGACGCCAGATCGGACGAGCCCTGAGCCAGGGTGCGGGTG
CCGTCGGCGAGCTGCGACGCACCGTCG	GCGAGCTGGTTCGCGCCGTCGCGCAGCTGCACGGCACCGCTCGAGAGCCGCCCGGTG
CCGTCGGCGAGCTGGTTCGCGCCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027929.1\|WP_137749719.1\|54949_55663_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|184875
NZ_CP027929.1\|WP_114598240.1\|52491_53865_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NZ_CP027929.1\|WP_137749725.1\|69031_69700_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238194
NZ_CP027929.1\|WP_071918804.1\|57159_58308_+\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|239432
NZ_CP027929.1\|WP_137749720.1\|55693_56395_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP027929.1\|WP_023953362.1\|51919_52459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027929.1\|WP_137749718.1\|53880_54894_-\|glycoside-hydrolase-family-6-protein	unknown	unknown	gnl\|CDD\|376532
NZ_CP027929.1\|WP_071918801.1\|60985_61651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027929.1\|WP_137749721.1\|58318_59020_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP027929.1\|WP_023953343.1\|61650_62289_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP027929.1\|WP_137749723.1\|65476_66463_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP027929.1\|WP_023953341.1\|62352_63786_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP027929.1\|WP_137750916.1\|68007_68832_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP027929.1\|WP_137749724.1\|66742_67951_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP027929.1\|WP_023953366.1\|50962_51313_+\|monovalent-cation/H(+)-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NZ_CP027929.1\|WP_064955256.1\|69859_70306_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227933
NZ_CP027929.1\|WP_023953364.1\|51327_51912_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379409
NZ_CP027929.1\|WP_052007649.1\|56380_57049_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP027929.1\|WP_064955259.1\|63810_64653_-\|NLPA-lipoprotein	unknown	unknown	gnl\|CDD\|224381
NZ_CP027929.1\|WP_023953337.1\|64736_65480_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922

Protein	Function_ID	Function_description	E-value
NZ_CP027929.1\|WP_137749719.1\|54949_55663_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	0.00110583
NZ_CP027929.1\|WP_114598240.1\|52491_53865_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	2.71681e-30
NZ_CP027929.1\|WP_071918804.1\|57159_58308_+\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|239432	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).	1.9094e-105
NZ_CP027929.1\|WP_137749720.1\|55693_56395_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	6.89177e-47
NZ_CP027929.1\|WP_137749718.1\|53880_54894_-\|glycoside-hydrolase-family-6-protein	gnl\|CDD\|376532	pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.	7.69649e-62
NZ_CP027929.1\|WP_064955259.1\|63810_64653_-\|NLPA-lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	4.36843e-88
NZ_CP027929.1\|WP_137749721.1\|58318_59020_-\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	2.45845e-27
NZ_CP027929.1\|WP_023953343.1\|61650_62289_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.26582e-05
NZ_CP027929.1\|WP_137749723.1\|65476_66463_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	3.5007e-141
NZ_CP027929.1\|WP_023953341.1\|62352_63786_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP027929.1\|WP_137750916.1\|68007_68832_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.16419e-27
NZ_CP027929.1\|WP_137749724.1\|66742_67951_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.4027e-60
NZ_CP027929.1\|WP_023953366.1\|50962_51313_+\|monovalent-cation/H(+)-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	3.48261e-22
NZ_CP027929.1\|WP_064955256.1\|69859_70306_+\|hypothetical-protein	gnl\|CDD\|227933	COG5646, COG5646, Uncharacterized conserved protein [Function unknown].	8.225e-06
NZ_CP027929.1\|WP_023953364.1\|51327_51912_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379409	pfam13977, TetR_C_6, BetI-type transcriptional repressor, C-terminal. This family comprises the C-terminal portion of proteins that belong to the TetR family of transcriptional regulators. The C-terminus represents the regulatory region, and does not include the DNA binding helix-turn-helix domain. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. One of the target proteins is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	2.819e-09
NZ_CP027929.1\|WP_052007649.1\|56380_57049_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	4.7131e-43
NZ_CP027929.1\|WP_137749725.1\|69031_69700_-\|peptidylprolyl-isomerase	gnl\|CDD\|238194	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. .	5.04969e-48
NZ_CP027929.1\|WP_023953337.1\|64736_65480_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	4.45121e-82

>NZ_CP027929.1|WP_137749721.1|58318_59020_-|HAD-family-phosphatase
MSTIDTRARSGGMVDVDADGARDPLAPERTRVDDVGTAVIDLVRRQDIDAVMFDCDGTLVDSEPIGHRVWSALAGDLGVVAAPGADAEGLSFEQRLEALRTTNPALPPTEVVYAEYWRRLRTAFEESLQPIEATYRLARELVRASIPVAIVSNSAQERLQYTVSCALPLLAGVTLVGWTPRDRPKPHPDLYRRAASLVAAPADRCLAIEDSAVGALAASRAGMRTLILDTVVH
>NZ_CP027929.1|WP_071918804.1|57159_58308_+|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MKITEIKTCGLRGATPEGGWTHEHGPDDVIHTLIAVHTDEGVIGVGSCYSSEALVRAALELLTPLVVGADPREPERVSQTLAAHTFWMGRGGAVAHAISGIDIALWDILGQTAGLSVGMLLGGVYRSRVRPYASLLVDDPAPLRDTLHEIAADGFHAFKIGWGGFGRRDSRYDEDVVAAARDAIGPDALLAVDAGGSDGFWAGRSAWAIRTSAMLADYDVAWFEEALAPDDIEGYTALRARAGVPIAGGEVLTRRQDFARCMRAGAFDIVQPDTTKSGGLSESRRVAWLAEEFGVQLIPHGWNTAVGLSADLHLASAVAGTDLVEYRTGSAYIDGLLETPPELDADGMLAVPEGPGLGIRLSQEALDRWGTRPDLLRPSVSR
>NZ_CP027929.1|WP_052007649.1|56380_57049_-|GntR-family-transcriptional-regulator
MSSSPLPPIPTASRRQQVADVLREAITSGDLEPGHKLTELELASQLGTSRAPIREALRQLEQEGLVVSYPYRGTEVLGVSQEEIENVLVPVRLALERFAFAKAMEACTDEDAAGLAAIIERMDDAASAGDLGRLADEDARFHEAIVILSGQQHCLQIWRTIQPRVRAYFRRDASFYSDPHAVGAQHRTLLDALRAGDQDEGRRVISEHIRTHFGDPADSLRS
>NZ_CP027929.1|WP_137749720.1|55693_56395_+|WYL-domain-containing-protein
MKRAERLHALSETLRRSGARGVSAERLAQEFEVSVRTVKRDLDALERSGAPIWSRPGPGGGYGLAAGSSLPPISLSPSQAVALMAAVAAATDAPYADLASAAVRKIVDVLDPRTRKHAADLAGRVWVDGAPGASRAVRSALEQAMAEQRVVRIRYTADSGATTTRDVEPVLFASNGGRWYLIGWCRLRDGIRWFAMDRVERAHVTAAECEGHTVAEVGRPPEHARPVGGSRTE
>NZ_CP027929.1|WP_137749719.1|54949_55663_-|alpha/beta-fold-hydrolase
MMTHCCPTPGGCWCHDRSAHLSPADARTKALTLPGLDGDDPAHATRTLEDQVDAILETLDSLGASPADPAVVVAHSGANGPVSIVVDRHPELVRRIVWVDSGPMASGSAFAPGLPETVSELPLPPFDELGQQASLAGLDADHLDRFRDRAMAEPAPVVREPVRLTNDARHAVPTTLVCCSISGAQVIRMAESGHPMFAEVTRLRHVDVVDLPTGHWPMWSRPRELADIIRAEVARGR
>NZ_CP027929.1|WP_137749718.1|53880_54894_-|glycoside-hydrolase-family-6-protein
MRSVLRIFSAITAVLALAVTVGIAHAAPASAHEQTRRGAGPSAGASSGPNPLARGAALPTYSAAAQAVSDARAQGRTAEADAFEVIASRPTATWLGEWYSDAELVRVLQAETAAAAAQNKVATFVMYAIPARDCSAYSQGGLPVDRYGAWARLIAQTLRGTASAVIVEPDALAMLGDCEGQGPRATLIGDAVRALTAAGVAAYVDAGNANWVPPETMAQRLRDAGVLEGRGFSTNVSNFSPTADEQRYAERLRALLGGAPRYVIDTSRNGRGWQGTWCNPTGVGLGTPPSIGTDGSGLDALLWVKRPGESDGTCNGGPAAGSWYEQAALELVRNRAF
>NZ_CP027929.1|WP_114598240.1|52491_53865_+|serine/threonine-protein-phosphatase
MLARVCYQKAWLRDPKRAGVVLTGGMTHAPPDTRVSPAETTPVVVATGHRSWENLARQAIVATVVVGAAIASAAVPWLPVTDATRMWQGAALAVVLLVLGALMARWPVLRRAELIIPIGDFVAIGLLRFGTGDTQSVFLAIVVLPVIWIAAGPGRWRILVPLVGVCVTLLLPLVLAPGQVLTVSEFVRLIIAVLVYAAAGAVVNELSRRSLQKLTASQWHRRLAEAEVSQAAVVQRSLQPVDGSDLPPRFRVAGVCVPARTVGGDFYDWYATPDGGTAFTLGDVMGKGVGPGMIAAAVRTVIRSNVDDPDPAAALRRAAVGLNTGPTDTIGTQFTTCFHARISPDGMLRWADAGHGLTIVRSADGTSFFLRSGQLPIGVGTGWTSDEVALRPGDSVISVSDGVLDLFGGSLDSIDRYRDFVTGRDDIDAVVSELAARAAQSEQEDDVTVIAVTWGIA
>NZ_CP027929.1|WP_023953362.1|51919_52459_-|hypothetical-protein
MILAAIIACEVGFWVAIVAGLVARYALNRPRLGAMLLLAAPLIDLLLLLLVAADLIGGGTASWHHGLAALYIGISVAYGHRMIAWADAKVATHFRGAAPRPALYGAAYAVACWKDVPRTLLAAAIAASILGGLIVVVGDADRTSELLGFFPILGVIVGIDLLWAISYSLWPKRAPVAAG
>NZ_CP027929.1|WP_023953364.1|51327_51912_-|TetR-family-transcriptional-regulator
MPRLIDHDHRNDEIAAAAFRVLARDGVAALSVRRVADEAGIATASLRRAFSTQDELRRFCLERLQQDVTTRLLAVTGQGRERAMRWMRELLPLDDSRRTELLVQLQLTRLALTDDGLRGHARDLHDGVHRVCAAAVEELAAAGELASHLDPVLETERLHALLDGLALHLIWTSSIDTVVNADEVLARHLDSLAG
>NZ_CP027929.1|WP_023953366.1|50962_51313_+|monovalent-cation/H(+)-antiporter-subunit-G
MTITDVIALVLVLIGALLCLTAAIGLLRFRDVPTRLHAATKPQVLGFILICIAVGVSLHSWPVVAFLVPVALIQLATAPLSAHMVGRQAYRNKTLDRDSLFVDEFADAPAPSDTRD
>NZ_CP027929.1|WP_071918801.1|60985_61651_-|hypothetical-protein
MRVELREVAKGRKDLALPPTSLSFRTGRATLAIAETEQRPTVLGLIASGRMRPDGGTVLLDGARAARTLRHKTALIDAPDVSDPPPNISTVGMVGEELMFAGRLADPISARRWLDEHDLRSYSRVPIGDVPATDRIRMLLELAALRPGVEGIVLVSPDRHGGDPHAWWTLAREFAGRGLAVLVIAGEAAATLLTETDPLAPHRRLVPSGIRLRGTRPKASR
>NZ_CP027929.1|WP_023953343.1|61650_62289_-|TetR/AcrR-family-transcriptional-regulator
MTDTVSPRRPRKDAAANRAGLLSAAARTLALDPSASVDAIARAAGLSRRALYGHFDDRDALVRELVASGAQRFNAIATDPALRLDTEPVPVALARLTGRLWGEASHVQVAAAVALDERHVEDSAAALAPLRRALMALVRRGQDEGTLRTDVAAPTLARLIEETARTVIVRLDASSPEARSLVVRAVLSIAGLSWRDAAAIIDAHADVVGTVS
>NZ_CP027929.1|WP_023953341.1|62352_63786_-|argininosuccinate-synthase
MSKVLQSLPVGERVGIAFSGGLDTSVAVAWMRDKGAVPFTYTGDLGQYDEDDIASIPGRALQYGAEGSRLIDCKPMMVEEGLVALSCGAFHIRSAGRTYFNTTPIGRAVTGTMLVRAMKEDGVDIWGDGSTYKGNDIERFYRYGLLANPALRIYKPWLDADFVTELGGRTEMSEWLVAHGFPYRDSVEKAYSTDANIWGATHEAKTLEHLDVSLEIVEPIMGVRFWDPAVEIETEDVSVTFEAGRPVAVNGVEYSDIVQLVMEANAIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLFIAYERLVNGILNEDTLATYHEQGRRLGRLMYEGRWLEPQSFMLRESIQRWVGSAISGTVTLRLRRGEDYTILNTESRNLSYSPEKLSMERVGDSAFGPTDRIGQLTMRNLDIADSRSRLEHYAGIGLIGGPTAELVGDLERGGAAEITGNVEPTDQDLAERVDAAGESASFDFGAD
>NZ_CP027929.1|WP_064955259.1|63810_64653_-|NLPA-lipoprotein
MSRTARTARTPLLIAAVASAALLLAGCAGSPASESGDADGDGLGTLKVGALQTPAGDILNHIAENGAAELGLTIEFVPFTDYNTPNTALVDGSIDANLFQNSTFLENFNTNTGSDLISVGEAYLPSAAFYSSKVDSLDDLEDGATIAIPNDPTNEGRALKLLAQEGLIEVSDDVADLTGITDNPRDFRFQEIENATLPQAVPDVDAAFVTISFALPAGLTADQAILTEGEGSPYYNVLATRPDLKDDPRIVALYDLLTSTEVADFENETWGGLVVPVTKD
>NZ_CP027929.1|WP_023953337.1|64736_65480_-|ABC-transporter-permease
MNEQLLNLLLVATGQTLYMVGVALLATIVIGLPLGVVLVGTEQGRFLATPFGSRRVGIVINRVLDFIVNLGRSVPFIILMVALIPFTRLIVGTFIGPTAAIVPLSVVAIPFFARMVEIAIKEVDDGLLEVAASLGASRWQLVTKVLLPEAAPAMLLGLSTTVTSIINFSAMVGTVAGGGLGDVAIRYGYQQYSWIHIVSVIVVIFAIVMVLQGLASWGARRLARRSPRGRTASPSARMQRADARGAA
>NZ_CP027929.1|WP_137749723.1|65476_66463_-|ATP-binding-cassette-domain-containing-protein
MIALEHVSKTYGGLTAVDDVSLQIPSGEIYGIVGQSGAGKSTLARMVNLIERPDTGRVVVDGVDLTALDANSLRAARRRIGMVFQRFNLLGSRSVRGNVELALELDGSPRTRRRDRAQEMLDLVGLGHRGDAAVHELSGGQQQRVGIARALASGPSVLLSDEATSALDPETTTSILDLYRRINAELGLTVLLITHEMDVVKSTCDSAALIEHGRVIESGRLTDVIRTPGSRLTSQLFPLGPIPAGVDPSATVIDITFAGGTADRPVIARIARDHDVDVSLLGALVEQIAGTQAGRTRLEVPASAAAAVIADLRSQGLIVDVLRGGDAA
>NZ_CP027929.1|WP_137749724.1|66742_67951_+|MFS-transporter
MTSTAAIPLAHENAAPMRYGGLIVVMLMGFLVVTAEFLPNGVLTEMAAGLGVTPGQAGQTVTITALAGLIAAPTIGLIFPRLDRRALLVGAAAAASVSSIVVALSPHLVAILIARFFLGASISAFWSMSITVAARLAGPERIGRAMMFTSAGVSLATVAGVPLGVLLSEMLDWRIAFAVVGAATAAVALAVRLTLPTVPAAAASSLRLLVDSLRRTGVAAGMVGHVLVVLGHFLAYTYIRLALERVPDVGAETIVLLLAVFGAGGLVGNLVIGLLVDRAFRVLAVTAPVVIAAALALLVLLPGSIPVVVLAVFAWGFFFASWLIIVNTWVGHRMPDRLEAGGSLTVVGFQLAIVLAAGLGGLLVDLVGVVAIDVVAVTLLAAGAVLFGWVVRTHEADRMPRP
>NZ_CP027929.1|WP_137750916.1|68007_68832_-|helix-turn-helix-transcriptional-regulator
MAHRADLAPGGSLPLGTGDATLVYVRSGEITGDPASGTSCTVVGPSGDAATPTGARTLLAGDAFLSLGCRPISLTSQSGAELTVVPADVSLAAVTPLPPFVFVDGFVELEPAAAALVSHLGTGTASGRSGDAVICQMMVKTVLLSAIRSWAAHTAGASAWPAPAVDPFLSRAAEAVAADPGRDWTIDQLASLSAMSRTVFAARFRRAYGRSPASYVTEIRMQHAKDMLESGASVSETSRTLGYGSDEGFSRAFRRHTGMPPSLWRARAAAPSLY
>NZ_CP027929.1|WP_137749725.1|69031_69700_-|peptidylprolyl-isomerase
MRARLGSALLVLSALALAGCSSSPAPAEPDTMPTAETVPEGSCAYVEAAGGVRDVTPPPAEAEVSGQVSAVLQTSAGDIPMTLDADRTPCTVGSFVSLAEQGYYNDSPCHRLTTSGIFVLQCGDPSGTGRGGPGYNYADELNGSETYPAGTVAMANAGPNTNGSQFFLVYEDTPLPAKYTVFGTLDEAGLAVVREVAAAGAEGGAADGAPATPVTITGVSLG
>NZ_CP027929.1|WP_064955256.1|69859_70306_+|hypothetical-protein
MADSTAGGAGFSDEEKAAMKQRAEELRSTKGLKGAAKLAKELEACMEAIDALEGIDGEVARMVHRIVSEEASDLDPKTFYGFPAYARAGKVVIFVQPKSKFDTRYPTLNFDETATLDDGSMWPTSFAIVEVTPEVERRVRALVRAAID

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Crispr_ID: NZ_CP027929_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027929_2

1937275-1937386

Unclear

Consensus_repeat	Method
CGCCCACTCACAACCCGCGAAGGGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027929_2

>merge|NZ_CP027929|2|1937275-1937386|CRISPRCasFinder
CGCCCACTCACAACCCGCGAAGGGGCGCAACCTGCCTACCCAACCCGCAGCCGGCCCCACACCACCCCCTCACCTGGCAGCACACGCCCACTCACAACCCGCGAGGGGGCGC

>NZ_CP027929|2|2|1937275-1937386|CRISPRCasFinder
CGCCCACTCACAACCCGCGAAGGGGCGC	AACCTGCCTACCCAACCCGCAGCCGGCCCCACACCACCCCCTCACCTGGCAGCACA
CGCCCACTCACAACCCGCGAGGGGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027929.1\|WP_064956485.1\|1933873_1935055_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP027929.1\|WP_023950384.1\|1941296_1942577_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP027929.1\|WP_137750397.1\|1945165_1946551_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273080
NZ_CP027929.1\|WP_137750395.1\|1932650_1933877_-\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236182
NZ_CP027929.1\|WP_137751003.1\|1940794_1941205_-\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NZ_CP027929.1\|WP_064956482.1\|1946453_1947176_-\|MazG-family-protein	unknown	unknown	gnl\|CDD\|237065
NZ_CP027929.1\|WP_023950404.1\|1932133_1932625_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_CP027929.1\|WP_023950398.1\|1935119_1935686_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NZ_CP027929.1\|WP_071918021.1\|1944852_1945104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027929.1\|WP_023950409.1\|1929746_1930523_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237825
NZ_CP027929.1\|WP_036304558.1\|1937477_1938914_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP027929.1\|WP_137751002.1\|1936285_1937194_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP027929.1\|WP_084670435.1\|1942675_1943353_-\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP027929.1\|WP_023950408.1\|1930619_1931312_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|367292
NZ_CP027929.1\|WP_023950407.1\|1931327_1931573_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027929.1\|WP_137750396.1\|1938957_1940268_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|274856
NZ_CP027929.1\|WP_137751004.1\|1944268_1944799_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027929.1\|WP_071918022.1\|1935764_1936244_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP027929.1\|WP_137750394.1\|1931653_1932049_+\|DUF4307-domain-containing-protein	unknown	unknown	gnl\|CDD\|379491
NZ_CP027929.1\|WP_103841932.1\|1940219_1940690_-\|DUF501-domain-containing-protein	unknown	unknown	gnl\|CDD\|377352

Protein	Function_ID	Function_description	E-value
NZ_CP027929.1\|WP_064956485.1\|1933873_1935055_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	6.99013e-46
NZ_CP027929.1\|WP_023950384.1\|1941296_1942577_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP027929.1\|WP_137750397.1\|1945165_1946551_-\|histidine--tRNA-ligase	gnl\|CDD\|273080	TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. [Protein synthesis, tRNA aminoacylation].	5.86756e-97
NZ_CP027929.1\|WP_137750395.1\|1932650_1933877_-\|threonine-ammonia-lyase	gnl\|CDD\|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
NZ_CP027929.1\|WP_137751003.1\|1940794_1941205_-\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	5.19387e-15
NZ_CP027929.1\|WP_064956482.1\|1946453_1947176_-\|MazG-family-protein	gnl\|CDD\|237065	PRK12334, PRK12334, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.03602e-67
NZ_CP027929.1\|WP_023950404.1\|1932133_1932625_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	2.49892e-48
NZ_CP027929.1\|WP_023950398.1\|1935119_1935686_-\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	1.47334e-75
NZ_CP027929.1\|WP_023950409.1\|1929746_1930523_-\|isoprenyl-transferase	gnl\|CDD\|237825	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional.	5.66704e-124
NZ_CP027929.1\|WP_036304558.1\|1937477_1938914_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	3.47031e-95
NZ_CP027929.1\|WP_137751002.1\|1936285_1937194_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.52108e-42
NZ_CP027929.1\|WP_084670435.1\|1942675_1943353_-\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.80046e-48
NZ_CP027929.1\|WP_023950408.1\|1930619_1931312_+\|hemolysin-III-family-protein	gnl\|CDD\|367292	pfam03006, HlyIII, Haemolysin-III related. Members of this family are integral membrane proteins. This family includes a protein with hemolytic activity from Bacillus cereus. It has been proposed that YOL002c encodes a Saccharomyces cerevisiae protein that plays a key role in metabolic pathways that regulate lipid and phosphate metabolism. In eukaryotes, members are seven-transmembrane pass molecules found to encode functional receptors with a broad range of apparent ligand specificities, including progestin and adipoQ receptors, and hence have been named PAQR proteins. The mammalian members include progesterone binding proteins. Unlike the case with GPCR receptor proteins, the evolutionary ancestry of the members of this family can be traced back to the Archaea. This family belongs to the CREST superfamily, which are distantly related to GPCRs.	1.72308e-42
NZ_CP027929.1\|WP_137750396.1\|1938957_1940268_-\|S8-family-serine-peptidase	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	1.12014e-58
NZ_CP027929.1\|WP_071918022.1\|1935764_1936244_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.54954e-17
NZ_CP027929.1\|WP_137750394.1\|1931653_1932049_+\|DUF4307-domain-containing-protein	gnl\|CDD\|379491	pfam14155, DUF4307, Domain of unknown function (DUF4307). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 132 and 153 amino acids in length. There is a single completely conserved residue C that may be functionally important.	1.16234e-19
NZ_CP027929.1\|WP_103841932.1\|1940219_1940690_-\|DUF501-domain-containing-protein	gnl\|CDD\|377352	pfam04417, DUF501, Protein of unknown function (DUF501). Family of uncharacterized bacterial proteins.	5.39449e-49

>NZ_CP027929.1|WP_137751002.1|1936285_1937194_+|EamA-family-transporter
MLSNRVVLVALTAIAPVVWGTTYLTTTTFLPPGHPLLIATVRALPAGLILLLAARRLPTGSWWWRSWVLGALNFTAFFGCLFVAADRLPGGVAAVVGGIQPLLVAVLGWRMLSERLTVVTVVAGAAGVVGVGLIVAPGGADLDPVGIAAALGGAVSMAVGTVLTKLWGSGQPPLAMTAWQLVTGGLMLAMLTFLVEPLPDALPSVSELGAYAYLTLIGTALAYVLWFRGVRSLPTRLPAFVGLLSPVVAVLLGLIVAGETLSALQAIGLVAVLASVTAAVAQPRPKATPVPPVGLEPTLKRF
>NZ_CP027929.1|WP_071918022.1|1935764_1936244_-|MarR-family-transcriptional-regulator
MDHVDRILEQWAREKPGLDVSPMAVIGRLGRAAASVDARLAATFASHGIDAATFDVLATLTRQGAPYELTPAALAADAMITSSAVAQRLNRLEGLGYVSRHPDPADGRGKIVRLTAHGRAVVERVLPDHLETERAVLAPLSDGEQAQLAELLSRLAPGG
>NZ_CP027929.1|WP_023950398.1|1935119_1935686_-|LemA-family-protein
MEWLIPVIVVVALLAIVGIYLWATYNSLVALNVRVDEAWSDITVQLKRRADLLPNLIDTVRGYAAHEKAVFENVTRARAEILSASGPAEAGVAEGHVQQALKSLFAVAEAYPQLQASQNFLQLQQALVDTEDKIQASRRFYNGGVRELNTKIKVFPNNLFARSLGFTEREFFEVENGAAIAEPPRVQF
>NZ_CP027929.1|WP_064956485.1|1933873_1935055_-|AI-2E-family-transporter
MSDDKVGRSFLDALRNRTVATETSTSIPRGLRLATAYSWRLLVVAAAAGVAIWIIIQLKLLVIPLLIAILIAALLWPGLLWMLEHRVPRWAAIVLSVLATIAVISGLLWLAIWQISRQWASVQARTVEAVGQLRQYLIDGPLHLTSTEIDGLLKQGWGFLEQQASLLWSGALAIGSTVGHVATGALLVLFILLCILADGGRIWRWVVRLFPRQARPAVDGAGRTGWRTVVTYARTQLLVATIDATGIGLGALFLGVPLAAPIAVLVFLGAFIPFVGAVVTGALAVFLALVYNGPWIALWMLVIVLGVQQLEGHILQPLLMGSAVKVHPLAVVIVVAGGAMIAGIPGALFAVPLAAFVNVVVLYISRRSWETGVAPRPDEMIWSTVPRDRRKNA
>NZ_CP027929.1|WP_137750395.1|1932650_1933877_-|threonine-ammonia-lyase
MTGPTPADLDAAAAVLDGVVTRTPMEYSEHLSDLLGVPVHLKLENLQRTGSFKIRGATYRLSRLTAEERARGVVAASAGNHAQGVALAAQKLGIPATIFMPLGVPVPKLLATRGYGADVVLEGATVETPLRLAAEFAERTGAVLIHPFDHPDVITGQGTLGLELVDQVPDIETLLVPIGGGGLIAGVAAAVKGRAAAEGRRVRVIGVQAENAAAYPSSLAAGMPLAVETTPTIADGIAVARPGDETFAVIRELVDEVVTVSDDDIARALLVLLERAKQVVEPAGAVGVAAILAGKVAASGPTVAVLSGGNIDPLLLQRVVSHGLAASGRYMTLQIPLPDRPGQLARVSELLSVAGANVIEVLHTRHGQGLQISEVILQLSVETRGEEHRAQVISILEDAGFAPKVVAD
>NZ_CP027929.1|WP_023950404.1|1932133_1932625_+|transcription-elongation-factor-GreA
MSNDAPVTFLTQDAYDRLVAELEHLSTTGREEIAKRIEAAREEGDLKENGGYHAAKDEQGKQEARIRTLQQLLKDATVGEAPESDGTVLSGTVVTALVAGGEEVFLLGSREIAAGSELDVYSEASPLGEAILGLKEGDKTSYTAPNGREISVEIVKVETYSGQ
>NZ_CP027929.1|WP_137750394.1|1931653_1932049_+|DUF4307-domain-containing-protein
MTTQLKLDQRYGRTREKRSRRILIAVAGVLGAGILGLVAWTTVSGAITSVDTDATGFEVIDEHSVVVSFQVSGARDKPLACALEAQDTEHGVVGWRVVEYPAADGVSRAFTETVPTVALATNGLVTSCWIP
>NZ_CP027929.1|WP_023950407.1|1931327_1931573_-|hypothetical-protein
MNSLLWLTSAATPIPEITVDPTSVTPGPWGFGAIVILTIAVVLLLLDMLRRVRRGRYRAEVREQLDEEDAAARGEQDADTR
>NZ_CP027929.1|WP_023950408.1|1930619_1931312_+|hemolysin-III-family-protein
MPQLPLLDAAAASAQIELRPSWRGWIHAGTFPVAIAAGIVLIVLAQGAPAKWASAVFMTTSLLLFGNSALYHRFDWKPRTKAILKRIDHANILLLIAGTYTPLAVLALPTEQTVLLLSLVWGGAIAGIFFRVFWIHAPRWLYVALYLALGWAAVMYIVPLFQANAAMMILVIVGGLLYSGGAVVYALKKPNPWPGHFGFHEIFHVCTVLAFLCHWTACLLIALQPAYHAG
>NZ_CP027929.1|WP_023950409.1|1929746_1930523_-|isoprenyl-transferase
MAANRGRGPLYRLYASRLRRHLTPETVPHHVAMMIDGNRRWARQAGYPTPAEGHRAGAAKMYEFLRWCDELGIRVVSLYLLSHDNLAKRDSRELADLLEIIAELAETLSSEPGWRVQHVGRAAQLPEDLARVLAKAEDRTRDNTGLHVNLAVGYGGRGEIVDAVRSIITSHHERGGSMEELAESLTPEQIGEHLYTGGQADPDLVIRTSGEQRLSDFLLWQSAHSEFYFVEALGPDLREVDFLRAIRDFATRDRRFGG
>NZ_CP027929.1|WP_036304558.1|1937477_1938914_-|FAD-dependent-oxidoreductase
MPQILVVGGGYAGFYTAWKLEKHLRKGEAEVTIVDPLPYMTYQPFLPEVAAGEIEGRHVVVGLRRHLKRTNVVNAKVTKIDHANKVATITPAEGEPWEHRYDQIVVTAGAVSRTFPIPGIADNAIGLKTVEEAMAIRDRILTNFDRAANLPAGPERDRLLTVVVVGGGFAGIEVFAELRAMASSLLKSYPQLRFEDTHFHLIEAMGRIMPEVSLETSQWVLKDLAKKGANVHLDTQVQGAEGGNVALSTGEVIPTDVIIWTAGVMANPTVVRGSDLPVEERGRIRTRADLRVGTPEEIVEGAWAAGDISAVPDLSGGGVGGYCVPNAQHAVRQAKLLAKNLVAVLRGETPREYFHKNLGAVAGLGLGNGVFQSGKIAIKGFFAWVAHRGYHGLAMPSWERKWRVVGDWWMNFWLGRDNVALQGTLTPRAAFEEFAARPRPAQPAAENPQPPIDPKSVAKDEGAAAVAPAEKDNKVNAS
>NZ_CP027929.1|WP_137750396.1|1938957_1940268_-|S8-family-serine-peptidase
MVARAVQLREPPGGRVTRRVGRFLRATVVGVLVVTAATAGAVAPPTDPARQAEYWLDDYGIRTAWQTTRGAGTTIAVIDTGIGRGPAEFEGAVSAGADFSGSGSADGRTPVGGDDRDHGSWVASLAASRGTGPDAGMIGVAPEAKLLSLSIGFGGASDIPFATQVADAMTWAVDQGADVINLSFTTNLLEWDPSWDTAFQYAYDHDVVVVVAAGNRGTGTDRVGAPATIPGVLTVGGVDRGGVASQEASTQGITIGISAPSEGLLGVSADGRIVVWDGTSGAAPIVAGVAALVRSAHPGLDSNNVINRIIKTARAVPGVSAKPDPLYGYGLLDAAAAVTAAVPAVSENPMGDLAEWVRIYRRAEQAPAPQPTTSPIALPELPAADPPSEAGSPLLPSMNTLLYGTVPLVGATMAAILVALGVTAAVRRIRSARASR
>NZ_CP027929.1|WP_103841932.1|1940219_1940690_-|DUF501-domain-containing-protein
MREQLGRPMRGVVGIAARCVCGNPTVVSTEPRLPDGTPFPTFYYLTHPGATAAMSALEATHVMRELSDLLADDSDIAAAYRRAHEQYLADRAAYGEVEEIAGISAGGMPTRVKCLHAVAAHALAAGPGVNPIGDLALERSTWSPERCSCANPRVAA
>NZ_CP027929.1|WP_137751003.1|1940794_1941205_-|septum-formation-initiator-family-protein
MGGIRVSGFAFIMLGLVVLAACVLVPSVSTYLDQRAQIAALEESVRVGQDEVDALYAEREQWRDPAFIMTQARERLYYVRPGEVVYLIDDDLPASAVPDDPAAVSSDVERTRTDWMSQFVRSVVTSGSARTAATAP
>NZ_CP027929.1|WP_023950384.1|1941296_1942577_-|phosphopyruvate-hydratase
MALIEAVGAREILDSRGNPTVEVEVLLDDGIVQRAAVPSGASTGAFEAYELRDGDKSRYGGKGVLKAVTAVIDELGPAIEGVDASEQRIIDEILIETDGTENKSRTGANAILGVSLAVAKAAADSADLPLFRYLGGPNAHVLPVPLFNVINGGEHADNGIDMQEFFLAPIGAETFSESLRWGTEVYHVLKGELKAAGYATGLGDEGGFAPDLPSNREGLEFLVKAIEKAGFKPGSEIALGLDVAATEFFNDGVYRLDNKDWNAEQLTDYYVQLVNDFPIVTIEDALAEDDWDNWTALTEKLGDKVQLVGDDLFVTNPARLADGIRRKAANSLLVKVNQIGTLSETLDAIAVAHRAGYTTMLSHRSGETEDTTIADLSVAVNAGQIKSGAPARSERVAKYNQLLRIEEELGDAAEFIGRAAFPRFQG
>NZ_CP027929.1|WP_084670435.1|1942675_1943353_-|O-methyltransferase
MTTDPTPDSWRRTDAYLTATLVTPDPDLDAALADQRAAGLPAIEVSPLSAKLLQLLIRIGGVRRVLEIGTLGGFSTIAMARALPGDGRLLTIEAEPRNAEVARTSIARAGVDDRVEVRVGRGADVLPDVDEEFDLVFIDADKESNTIYLDHAARLTRPGAIVVVDNVVRAGRVSDPATEDEQVAGTRRGLEMLARDPRFDATALQTLDLKGWDGVAIALRVDPAS
>NZ_CP027929.1|WP_137751004.1|1944268_1944799_-|hypothetical-protein
MDSIGDDIGRIVLDAAGVQEAEGIDAEGHVQLIAASAAAERAARTLLHRSVVAARAGGASWSRIGAELGMSRQAAQQRFGADPSAGEESAEERWLGPVTAFDELPELEAAGRQGWRTVGAGMLAHRMRRTDTQWEHRRILWRVSLDRERQDGWEVGCRAFPWIYLVRDLGIPPVAD
>NZ_CP027929.1|WP_071918021.1|1944852_1945104_-|hypothetical-protein
MEERTSRRQIIRFRWAAAVAAIAGSVLAILAIGFDFSGFWGGFVLGTGVGSIVLAAYLSGLVTGMSRALSAPTWLPARETGSV
>NZ_CP027929.1|WP_137750397.1|1945165_1946551_-|histidine--tRNA-ligase
MPNARFANGCASSTPTSARPRAPVTPPPTWKDRTVPTVNPPRGMRDFLPADKARRERVLAVVRERYRAHGFDEIETPVMEEYGRLHAGIGGDNEKLAYNVLARGLDADGIRAAADDPAALTDLGLRYDLTVPLARFYASHRAELPTVFRAIQIAPVWRAERPQKGRYRQFVQCDIDIIGDATPRAEAELMAASLDALDALGLAGASVRVNDRRVLDEMLATFGFAEPERPGVLITIDKLDKLGTDGVVAELRERGATPAAADAFEAFLRRPQADAAGFDSDGIRSRLPEGVGDDVIAHLVGIGEAVRAARGGSAEVPLVFDPFLVRGMGYYTGTIFELAHPSVSYSLGGGGRYDGMIGRFLGSDVPAVGFSLGFERLVDLLGASAGDDRTGIVLVHDRDVPLPELLAAKSHLVETGSRVRLEQRPKNLKALLERAAADGYASFVTLRAGEDVRSAEPRSID
>NZ_CP027929.1|WP_064956482.1|1946453_1947176_-|MazG-family-protein
MPLGPAVLRRTTLGLPVRRSPMSDPLRAAADTMRAVRDRCVWTAQISHRDLVPYLIEESAEVVDAVEAGTAADLREELGDLLWQVLFHAEIASRSASDPFDIDDVARGLTEKMVRRHPHVFGDETAETPEQVLVLWNAAKAAEKRTRTSVLDGVSVHMPTLALAQKMLAKSAPVLSAAPPLPAEPPADEAELGEALLGLVAHARAQGWDAERALRERLRILDADIRAAEGAGDSAADLEG

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Crispr_ID: NZ_CP027929_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027929_3

2368986-2369068

Orphan

Consensus_repeat	Method
GGGCCGCTGACCCATGCCCTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027929_3

>merge|NZ_CP027929|3|2368986-2369068|CRISPRCasFinder
GGGCCGCTGACCCATGCCCTGCGCCGACGCGAAGGGGTTGTTGCCCGGACGCGGACCGGCGGGACGCTGACCCATGCCCTGCG

>NZ_CP027929|3|3|2368986-2369068|CRISPRCasFinder
GGGCCGCTGACCCATGCCCTGCG	CCGACGCGAAGGGGTTGTTGCCCGGACGCGGACCGGC
GGGACGCTGACCCATGCCCTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027929.1\|WP_023955151.1\|2378329_2379460_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP027929.1\|WP_137750547.1\|2356544_2357732_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP027929.1\|WP_137750554.1\|2375690_2376884_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380190
NZ_CP027929.1\|WP_137750555.1\|2376874_2377462_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP027929.1\|WP_103842259.1\|2373008_2373818_+\|DUF1206-domain-containing-protein	unknown	unknown	gnl\|CDD\|377695
NZ_CP027929.1\|WP_137750550.1\|2361886_2362888_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP027929.1\|WP_023955135.1\|2371099_2371708_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224500
NZ_CP027929.1\|WP_023955131.1\|2369689_2369941_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|225350
NZ_CP027929.1\|WP_071919310.1\|2366218_2366656_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP027929.1\|WP_023955115.1\|2358405_2359317_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP027929.1\|WP_137750551.1\|2362901_2365298_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379625
NZ_CP027929.1\|WP_023955117.1\|2359316_2360288_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP027929.1\|WP_137750548.1\|2357629_2358409_-\|trehalose-utilization-protein-ThuA	unknown	unknown	gnl\|CDD\|153236
NZ_CP027929.1\|WP_137750546.1\|2355181_2356420_+\|glycoside-hydrolase-family-27-protein	unknown	unknown	gnl\|CDD\|269893
NZ_CP027929.1\|WP_088380190.1\|2371806_2372913_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176239
NZ_CP027929.1\|WP_137750549.1\|2360349_2361702_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP027929.1\|WP_137750553.1\|2373882_2375640_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP027929.1\|WP_084670423.1\|2377555_2378182_+\|pyroglutamyl-peptidase-I	unknown	unknown	gnl\|CDD\|237299
NZ_CP027929.1\|WP_137750552.1\|2365307_2366174_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP027929.1\|WP_023955133.1\|2369971_2370958_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061

Protein	Function_ID	Function_description	E-value
NZ_CP027929.1\|WP_023955151.1\|2378329_2379460_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP027929.1\|WP_137750547.1\|2356544_2357732_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.63838e-39
NZ_CP027929.1\|WP_137750554.1\|2375690_2376884_-\|hypothetical-protein	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	9.66389e-06
NZ_CP027929.1\|WP_137750555.1\|2376874_2377462_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.7424e-26
NZ_CP027929.1\|WP_103842259.1\|2373008_2373818_+\|DUF1206-domain-containing-protein	gnl\|CDD\|377695	pfam06724, DUF1206, Domain of Unknown Function (DUF1206). This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.	1.92359e-07
NZ_CP027929.1\|WP_137750550.1\|2361886_2362888_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	9.88516e-87
NZ_CP027929.1\|WP_023955135.1\|2371099_2371708_+\|hypothetical-protein	gnl\|CDD\|224500	COG1584, COG1584, Predicted membrane protein [Function unknown].	7.97937e-14
NZ_CP027929.1\|WP_023955131.1\|2369689_2369941_-\|YlxR-family-protein	gnl\|CDD\|225350	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription].	1.56872e-19
NZ_CP027929.1\|WP_071919310.1\|2366218_2366656_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.34173e-47
NZ_CP027929.1\|WP_023955115.1\|2358405_2359317_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.14035e-69
NZ_CP027929.1\|WP_137750551.1\|2362901_2365298_+\|hypothetical-protein	gnl\|CDD\|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	3.31243e-14
NZ_CP027929.1\|WP_023955117.1\|2359316_2360288_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.94603e-76
NZ_CP027929.1\|WP_137750548.1\|2357629_2358409_-\|trehalose-utilization-protein-ThuA	gnl\|CDD\|153236	cd03142, GATase1_ThuA, Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.	9.9645e-115
NZ_CP027929.1\|WP_137750546.1\|2355181_2356420_+\|glycoside-hydrolase-family-27-protein	gnl\|CDD\|269893	cd14792, GH27, glycosyl hydrolase family 27 (GH27). GH27 enzymes occur in eukaryotes, prokaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-N-acetylgalactosaminidase, and 3-alpha-isomalto-dextranase. All GH27 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH27 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.	2.0832e-90
NZ_CP027929.1\|WP_088380190.1\|2371806_2372913_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176239	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP027929.1\|WP_137750549.1\|2360349_2361702_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	3.49797e-40
NZ_CP027929.1\|WP_137750553.1\|2373882_2375640_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP027929.1\|WP_084670423.1\|2377555_2378182_+\|pyroglutamyl-peptidase-I	gnl\|CDD\|237299	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional.	2.01543e-77
NZ_CP027929.1\|WP_137750552.1\|2365307_2366174_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.56469e-81
NZ_CP027929.1\|WP_023955133.1\|2369971_2370958_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.81841e-166

>NZ_CP027929.1|WP_071919310.1|2366218_2366656_-|30S-ribosome-binding-factor-RbfA
MSSERQSRLADRIRVLVAERLEKGLRDPRLGFVTITDVRVTGDLQHASVFYTVYGSDQERADSADALRAATGMLRSEVGRKLGVRVTPTLEFILDAIPENAGHIEHLLREARERDAATAATATGASYAGEADPYVKPREADEDED
>NZ_CP027929.1|WP_137750552.1|2365307_2366174_+|A/G-specific-adenine-glycosylase
MPDLASPLIAWYRDNARDLPWRRPGFDAWGTLVSEFMLQQTPVARVIPLLEAWLERWPTPADLAAAAPADAVRQWANLGYPRRALWLHRAAVEIRDRHAGVVPRDVDDLLALTGIGDYTARAVAVFAYGDRHPVVDTNTRRVLARAVQGRSQPGPAAKRDLVDMAEILPDDIAASTVVNAAAMELGALVCTARVPRCDACPLADRCAWRAAGYPDTGDTRVKQARYEGSDRQARGAILQVLRAATTHDVAAEDVIGDWPDAAQRDRAIDSLVVDGLVEAVDGRLRLPR
>NZ_CP027929.1|WP_137750551.1|2362901_2365298_+|hypothetical-protein
MSARPELVFRSTEPADSWEDGLIVGSGRVGAVVHGPGDELRISMAHERFFLPANPRPPAPLLHPVLPRLRTALAAGDSGSADGLLGAALTDAGFTDLVWTDPLALCGSLTVTTPGGCAATTREIDLVRGVASVTWRDHSDTLHRVSVVAPRATDTIELALEAGADTEMRIRLALDTVDDTPAASFAPDYTGTVTGRVRAGDTGRLEIVDVAGRILAAATATTAESGVVWRRDADGLEARVLVPAGARRTVRVDLSVIGHPFVPAPAADWGERLDSQERAHGSLVTTSLLDLDGASDTVATTTERLWREARSGNPEAVRRAIEIAYISGRSNIISSTGELPPTLQGVWQGTWRPAWSADYTMNGNVQNGALAGVGVTGTPELALSLLGLVLPHLDDYRENARRVYGADGMLLPSRMSTHGIANHVDRSFPHVFWTGAGPWVLRIAADTVALTGDRSVVDDRLWELVEGVLAFGETATVVVDGIRHFSPSYSPENTPDGSATPLAMDAAIDVAAYRDAARAARLLGRARGDDSLDDRWQALASSVPDFAVAPDGTLAEWLDPAAQENAAHRHVSQLYPLWYETDEMFGADAPPAAALRQAAQRTIDAKVAWRAADPAPPPGRMEMAFGLAQIGLAAAALGDAETAVQCVEWLSLLHWRPSLTTTHDADSIFNLDASGALPAVVASMLSRSTVDSLHLLPALPARWPRGRITRLRARGGIVIDRLSWDEASATVEVRRLAAASWLCPSGTTTVHAGSGFTWADEHGGEHGGARIVELGEAPVTLRMRRKASTTAEGTTSAS
>NZ_CP027929.1|WP_137750550.1|2361886_2362888_+|LacI-family-transcriptional-regulator
MSRPTIVDVARAAGVSRATAARVLAGATNVDPAMAAAVGREAARLGYETNFAARVLRGGRAGAIGLVIAFDELGGLSGTFFTAVMKGAAKGLSAGEVQPVLLPADHEDLDRIPRFLRSGAIDGAIVVLQHEITHLVDRLADSPVPIAWVGRPRGEIGPDPIVIDSDNYGGGVLAARALVEHGRRNIGIITGPLDMEQARERTRGWTDELARHGIEPGPIVHGDFTLDSGTAAMARLLQRVPTLDGVFACSDLMAAGAMRVLQAAGRRVPTDVSLVGFDDILLAAANDPPLTTVRQPLEEMGRAAADTLLGAIRGADVERVQVLPTSLVHRESL
>NZ_CP027929.1|WP_137750549.1|2360349_2361702_-|carbohydrate-ABC-transporter-substrate-binding-protein
MRERSLSGVSQRPAHITCPQRRGAVVNRRRLALPVAALGVVAIAMTACTSGGSGGGSDDPNAEFEFWSFTGIGQQDSVNQYLEQNPDAKVKLSEVGSTAETATALTAALAGGRVPDLVMIQNDELPKFIENPGNFIDLRTLGGDELGEGYLDWAIAEATGEDGSIIGIPTDIGGLGFAYRADLFEAAGLPTDPDEVAEMWSTWDGFIEMGKKYTAATGEPFVDNVETSVFFSTVNQVTEKYYTPDGELIFDTNPQVEEAFDVAVRTYEAGISAGIAAWSSGWAPGKANGAFAVSTAPSWMLSGYKNDAPDTEGLWRVTSIPGVGGNWGGSVIAIPARAKNPQAAWKYIETMLSPEGQTAHFARTGTFPAAKSALESTEVTSYTDPFFGDSRIGEVISNSVLQFQSFHNGPDTSAIGAALLNALVDMEAGNVAPRDAWQTGVDSARAAIGG
>NZ_CP027929.1|WP_023955117.1|2359316_2360288_-|sugar-ABC-transporter-permease
MTATATATAITIDKKAARRERPPKRAIRQPLAERIAPYVYIAPFFVIFLIFGLFPLLFTFYVALFDWNPIGEQTFVGLANFERLVQDARFWNAFVNTFGIFLISTIPQLLLALGLAHLLNHATLKMANFFRMALLVPYITSVAATALVFAQIFDKNFGLINWVLDLFGIPAVNFLSSQVGSWIVISSMVMWRWFGYNTLLYLAGLQALPREMYEAASVDGASGWQQFIHLTIPSLRPIIIFTVIMSTIGGLQIFTEPLLVAPESGLTCGGGRQCQTLALFLYEQGFGQFEFGYGSAIGVALFVVVVVVSAINFFLTTRTRKAR
>NZ_CP027929.1|WP_023955115.1|2358405_2359317_-|carbohydrate-ABC-transporter-permease
MSDAVDTAVPRPLDPTALSAPRKRPRRGGGRVGRVPWPVYVLLGIAVVISVFPLYYMFVIASVGASAVTSIPPRFYPGLNFFDIATKVFDTVPFFQSLLNSAIVSLSIAVIASLLCALAGFAFAKLQFRGRGALFVIVLLTMTVPAQLSVIPQYLIISWLDWVDTLQAIIVPGLASAFGIFWMRQHMATTLNDELMHAARIDGANSWQIFWRIGFPVVRPAAFVLGLITFTSVWNDFMWPFIVLKSPELFTVQIALKQLQANRSIDLALTMGGSFLATLPLLIVFFVVGRRMVAGIMDGAFKG
>NZ_CP027929.1|WP_137750548.1|2357629_2358409_-|trehalose-utilization-protein-ThuA
MTGTASAPIRVLVWGENHHEKHHDIPRALYPETMHGTIAVGLRRLLGDAAVVETATLDDPEHGLSEERLAQTDVLFWWGHLLHDEVDEVVVERVHRHVLGGLGFVALHSAHFSRIFIRLMGTTCALRWRQAQDRELVWTVSPTHPIAAGVPQPIVIPEQEMYGEFFDVPQPDELVFVSNFSGGEVFRSGMTFFRGHGRVFYFSPGDQDYPVYHQPEIQLVLANAARWARSDRPRRAARLAMHRTGEWDVPREWDGEEQS
>NZ_CP027929.1|WP_137750547.1|2356544_2357732_-|Gfo/Idh/MocA-family-oxidoreductase
MGSERPPPPRGPFGDASHGGVGRSAGVGRRGAVVTERVRRVVVVGAGAMGKAWIDTVARRPDLEIVGLVDILADAARAAALERGLDVPSFGSVGDALAVLDVDLIVNVTIPQAHLEVSAAALRAGVPVLSEKPVTPTVAEALLLSAVSASTGTLMATSQSRRHSRGIRAFRDALVSLGGAEQLDVRFFQNPRFGGFRDEMPSPLLVDMAIHQFDQARYLLSSEPVSVFCDEFSPSWSWYRGAAAAEAIFRFADGRRFSYSGSWCADGLTTSWNGDWRGSAAGGSAAWDGETDVVVQPREGSAQAVALAGGAEGLDAALAEFVTALDGGPEPSGEISRNIGSLAMVEAAVASAAAGAPVRFDDLFERASARAEELARAGGFDDAAGRLGIDPRRVP
>NZ_CP027929.1|WP_137750546.1|2355181_2356420_+|glycoside-hydrolase-family-27-protein
MGWNSWDCFGSSVTEAEVLANAEYAAEHLLAFGWDTIVVDIQWYEPDPGAHDYREVSRPLLDAWGRPLPAPGRFPSAAGGSFRPLADRVHELGLRFGVHLMRGVPRAAADAGLPVSGHPDATCDSIADRANVCAWNPDNYGVDMTAPGAQEYYDSVMAQLAAWEVDFVKLDDVLYPPVETAEIAAISRAIDRSGRPMVLSLSPGKRLSLAHLDALREHGQMWRISDDFWDDWSQVVEQFQRAARWAPFQMRGAWADADMLPFGRIGVRGHVGEDRLSRLSVEEQRTVMTLWSMMRSPLMMGGHLPDTPPETLALLRNRGVLALRDGEESREIVRDGHLVIWSARVGARAYRAVFWLGDDEQEVVVHLADLGLAGTGTAGACTDVWHGKSVEIADGRVMLTVPAHGTRLLVFD
>NZ_CP027929.1|WP_023955131.1|2369689_2369941_-|YlxR-family-protein
MEPVRTCVGCRARASRSSLLRVVARDGVLIADRAASLPGRGAWVHETRECMDAALRRRAFGRALRVSGPLDTQDFPIDHQRKG
>NZ_CP027929.1|WP_023955133.1|2369971_2370958_-|transcription-termination/antitermination-protein-NusA
MDIDLSLLRTVEREKEIPFDELVRIIEQAVLTAYAKHTSPDGELPEGARAELDRKTGHVAIYVPLRDEDGAVIGEEESTPDDFGRIAAFAAKQVISQRLRDIADDAVLGEFRGKEGDIVAGVIQQGPNPRMVHVDLGTIEAILPPEEQVAGEEYRHGSRLRVYVTSVSKGTKGPSITVSRTHPGLVRKLFAMEVPEIANGLVEITSLAREAGHRTKIAVKANDPSINAKGACIGELGRRVRAVTEELGGEKIDIIDYNADLPTFVANALSPAKVTSSFVLDAATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILES
>NZ_CP027929.1|WP_023955135.1|2371099_2371708_+|hypothetical-protein
MTERAPRLADPGLIGLLGFVIATLTAQLEHLGLQNESPVFWVGAVFGGVVQVTAGMLSYFAGDDFHFIVYNAFGWYWICMPGFLLGGELGFFEVEGPARGVFTLMFSILALVFALSAASRNTVLPVTLLAVAVGLGLQTITAFGGPAAVGAAGSVALLVASALAAYMLLEKFYTRTLGRSILPLGPAWFRPASPVSIQAHTV
>NZ_CP027929.1|WP_088380190.1|2371806_2372913_+|NAD(P)-dependent-alcohol-dehydrogenase
MTTNAHAAVLHGQDAPFTFEEIVLDDIRPNELLVKVAATGLCHTDLAVQHGHIPAAFPFVLGHEGAGTVEQVGDAVVGYAVGDKVAVSFASCGHCTNCLTGREAYCRNFMALNFGGAREDGSATMTAADGSAVHGSFFGQSSFASHVIVEARNAVKLPATADVEIAGPLGCGVQTGAGTVLNSLDVPAGASVIVTGTGAVGLSSIMGAKVAGATTIIAVDIIPERLEFAAKLGATHTVNSKDEDAVARILEITGGVGADYAVDTTAVPAVVDTIVAATAFGAKIALVGVPKPGTEIALASISGSGKTFVGAIEGDAVPQKFIPEMLALHEAGRFPFDQLITKYPFSEIEQAIADTQSGKAVKAVLVMD
>NZ_CP027929.1|WP_103842259.1|2373008_2373818_+|DUF1206-domain-containing-protein
MAEHGVHDAASAVERHPAARVLARGGYVANGFVHLLIGSLIVAVAFGGERDADQTGAFRAVAELPLGFVALWAAAALLAALGVWHLAEGMLASRRRRGAAVWALRVSEWGQAVVFLFFGGLSAAVALGARPQADEAARDASRGILALPGGVFAIVLVGVGVAVAGVVFVVMGVRRSFHTKMTIPDGAVGRAVEGLGILGFIAKGIALGSLGGVLIVAAVRSRAEEAGSLDAAIRALLDLTFGPEIVVVVGAGLIAYGVFTVFRARYADL
>NZ_CP027929.1|WP_137750553.1|2373882_2375640_-|proline--tRNA-ligase
MVTRMSHLFLRTLREDPAGAEVASHKLLIRAGYIRPQAAGIFAWLPLGLRVKAKIERVVREEMAAAGAQEVHFPALMPREAYEATGRWEEYGDLLFRLQDRKGGDYLLAPTHEEAFTLLVKDLYSSYKDLPLTIYQIQDKYRDEARPRAGLLRGREFTMKDAYSFDANDAGLEASYQAQRDAYERIFQRLGLEYVIVQADAGAMGGSRSEEFLHPTPVGEDSFVRSAGGYAANVEAFTTVVPEAGPVDGLPEPVVFDSPDTPTIETLVAHVNANLEGDYTAAHTLKNVVLALTHLDGTRELVVVGLPGDRDVDDKRVEVAFAPAEVEPATAEDFAENPLLVKGYIGPWSPEGPVLGEESATGIRYVLDPRVVDGTSWITGANIDQKHVHSLVAGRDFTADAFVEVATVREGDPAPDGSGPVSIARGMEIGHVFQLGRKYAEALGLKVLDENGKLVTVTMGSYGIGVTRILAIIAELNNDERGLIWPASVAPFDVHVVATGRDAAAFELAEQLSGELEAAGLEVVYDDRPKVSPGVKFGDAELVGVPRIVIVGRGAADGQVELWDRRTGERETVAVADAVARLTAR
>NZ_CP027929.1|WP_137750554.1|2375690_2376884_-|hypothetical-protein
MDLNDQLTPNEHGDLRDRVVGGAKRMRAARARRSRIVAGAAASALVAVVVAGVTFAALRPDDRIATPVETSTPAPTPTPTPTPTGEPAPTPTATPDPEPQLLAPTMAFEGDCAQVVDTGALSASLGVEVGPATDVSTPEVRTLGGLGCSWESATFESVTVYALPASVVPAGVVSTYSDTVCEGFSYDNEGCRRALSDDDTWMLVTVSGLFGQAAGVSNEVVTARLDAVAPLFISALADAGRPTPAARTAAWWSPTTCDELLQQVSVADILGTTDFVEGYPSAFGADVHIEIARDAGLGTVCRWYAPNSARLDAVIVTIYPGGAWEWDRLAAGDRRQDVPVSVDVAGATEAVRGVGAIRPDSSYLLATDGVNVVEIMEAPDVVDAAERVLSAMRDATG
>NZ_CP027929.1|WP_137750555.1|2376874_2377462_-|sigma-70-family-RNA-polymerase-sigma-factor
MSSHDREPSRWCRTLQGVGDDEAAAWQRLRAGDESALGDLFDRYEPRLFRHATRLLTDREDAKDAVAIAFFELWRKRTGVRLVDGSPLPWLLTTVANAARNLERAGRRYRALLAKTPAAAASAAPSAHDESGVLAALKQLPAGEQSVVVLSVLEGYPERDVAQTLGIPVGTVKSRLSRAKSRLRDEMTALEASWI
>NZ_CP027929.1|WP_084670423.1|2377555_2378182_+|pyroglutamyl-peptidase-I
MLLTGFEPFGGDATNPSGDAVNLVADHWTGPENLVMAVLPVTFHGARLQLLELIVEHSPDVIIATGLAGGRTGIAVERVALNLKDARIPDNSGEQPVDEPSVRHAPDAHFATLPVKAIAADIMAAGIPASISYSAGTFVCNHVMFTALDGGEPGDRAAGFIHVPYATENAPEDQPSLPLSDIAQALRIAIRTSLDTEIDHSYTAGSIW
>NZ_CP027929.1|WP_023955151.1|2378329_2379460_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MPQVPDVLAPRRKSRQIRVGKVLVGGGAPVSVQSMTTTPTTDINATLQQIAELTASGCEIVRVAVPSQDDADVLHIIAKKSQIPVIADIHFQPKYVFQAIDAGCAAVRVNPGNIRKFDDQVGAIANAAKAAGVSLRIGVNAGSLDRRLLEKYGKATPEALVESAVWEASLFEEHDFHDFKISVKHNDPIVMVKAYRQLAERGDWPLHLGVTEAGPAFQGTIKSATAFGILLGEGIGDTIRVSLSAPPAEEVKVGHQILQSLNLRERKLEIVSCPSCGRAQVDVYTLADDVTAGLKDVTVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVIKTVPESEIVATLIEEARRIADELGPDAPLGTAQVVTA

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Crispr_ID: NZ_CP027929_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027929_4

2513896-2513999

Orphan

Consensus_repeat	Method
CACGCTCACCTGGCAGCTCACGCCCCCACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027929_4

>merge|NZ_CP027929|4|2513896-2513999|CRISPRCasFinder
CACGCTCACCTGGCAGCTCACGCCCCCACCCCGGCCTGCAAGGGGCCACAACTGCCCACCCGAACCCGCGCCTCACGCTCACCTGGCAGCTCGCGCCCCCACCC

>NZ_CP027929|4|4|2513896-2513999|CRISPRCasFinder
CACGCTCACCTGGCAGCTCACGCCCCCACCC	CGGCCTGCAAGGGGCCACAACTGCCCACCCGAACCCGCGCCT
CACGCTCACCTGGCAGCTCGCGCCCCCACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027929.1\|WP_023955376.1\|2505897_2507568_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP027929.1\|WP_088380519.1\|2516533_2516971_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP027929.1\|WP_137750605.1\|2518042_2518903_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP027929.1\|WP_023955403.1\|2520998_2523839_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NZ_CP027929.1\|WP_137750603.1\|2514147_2516493_-\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP027929.1\|WP_023955407.1\|2524393_2525566_-\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|380414
NZ_CP027929.1\|WP_137750604.1\|2517030_2518026_-\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|376676
NZ_CP027929.1\|WP_137750599.1\|2502715_2503378_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|379821
NZ_CP027929.1\|WP_023955386.1\|2511554_2512520_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP027929.1\|WP_023955405.1\|2523928_2524249_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP027929.1\|WP_036305938.1\|2518874_2519081_-\|DUF3499-family-protein	unknown	unknown	gnl\|CDD\|378788
NZ_CP027929.1\|WP_137750606.1\|2519610_2521002_-\|large-extracellular-alpha-helical-protein	unknown	unknown	gnl\|CDD\|235906
NZ_CP027929.1\|WP_137751022.1\|2503471_2504158_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP027929.1\|WP_137750602.1\|2509759_2510392_+\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|379261
NZ_CP027929.1\|WP_071919246.1\|2512526_2513828_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP027929.1\|WP_137750600.1\|2504224_2505901_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184183
NZ_CP027929.1\|WP_036305936.1\|2510388_2511558_+\|DUF4350-domain-containing-protein	unknown	unknown	gnl\|CDD\|379527
NZ_CP027929.1\|WP_081731891.1\|2519299_2519602_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240574
NZ_CP027929.1\|WP_137750601.1\|2508398_2509763_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370818
NZ_CP027929.1\|WP_023955378.1\|2507575_2508256_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NZ_CP027929.1\|WP_023955376.1\|2505897_2507568_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.02795e-56
NZ_CP027929.1\|WP_088380519.1\|2516533_2516971_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.4037e-36
NZ_CP027929.1\|WP_137750605.1\|2518042_2518903_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.53751e-14
NZ_CP027929.1\|WP_023955403.1\|2520998_2523839_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	2.26425e-20
NZ_CP027929.1\|WP_137750603.1\|2514147_2516493_-\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP027929.1\|WP_023955407.1\|2524393_2525566_-\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|380414	cd07011, cupin_PMI_type_I_N, type I phosphomannose isomerase in eukaryotes and bacteria, N-terminal cupin domain. This subfamily contains type I phosphomannose isomerase (PMI; E.C. 5.3.1.8; also known as mannose-6-phosphate isomerase) found in eukaryotes and some bacteria such as Salmonella enterica. PMI catalyzes the reversible isomerization of fructose-6-phosphate (F6P) and mannose-6-phosphate (M6P), the first committed step in the synthesis of mannosylated glycoproteins. The active site, located within the N-terminal jelly roll-like beta-barrel cupin fold, contains a single essential zinc atom and forms a deep, open cavity large enough to contain M6P or F6P. PMI type I also has a C-terminal beta-barrel fold which has diverged considerably from the N-terminal domain and is not included here. This subfamily contains an alpha helical domain that is found in eukaryotic and some prokaryotic PMIs but is not present in their archaeal counterparts. F6P is a substrate for glycolysis and gluconeogenesis, while M6P is a substrate for production of activated mannose donor guanosine 5'-diphosphate D-mannose, an important precursor of mannosylated biomolecules such as glycoproteins, bacterial exopolysaccharides and fungal cell wall components. PMI is also essential for survival, virulence and possibly pathogenicity of some bacteria and protozoan parasites, as well as for cell wall integrity of certain yeasts. Thus, PMI is a potential target against fungal infections causing serious illness or death.	1.04702e-93
NZ_CP027929.1\|WP_137750604.1\|2517030_2518026_-\|stage-II-sporulation-protein-M	gnl\|CDD\|376676	pfam01944, SpoIIM, Stage II sporulation protein M. SpoIIM is on e of four stage II sporulation proteins that is necessary for the forespore inside the mother-cell to be properly internalized through the breakdown of peptidoglycans trapped between the membranes of the septum separating the forespore and the mother-cell. The four proteins working in sequence are SpoIIB, pfam05036, SpoIIM, SpoIIP, pfam07454, and finally SpoIID, pfam08486. D, M and P are in a complex with each other and the complex assembles in a hierarchical manner such that M, which serves as a membrane anchor, recruits P to the septum and P, in turn, recruits D to the septum.	4.62099e-35
NZ_CP027929.1\|WP_137750599.1\|2502715_2503378_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|379821	pfam16321, Ribosom_S30AE_C, Sigma 54 modulation/S30EA ribosomal protein C-terminus. This domain often occurs at the C-terminus of proteins containing pfam02482.	2.01552e-24
NZ_CP027929.1\|WP_023955386.1\|2511554_2512520_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.58668e-98
NZ_CP027929.1\|WP_023955405.1\|2523928_2524249_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.15097e-28
NZ_CP027929.1\|WP_036305938.1\|2518874_2519081_-\|DUF3499-family-protein	gnl\|CDD\|378788	pfam12005, DUF3499, Protein of unknown function (DUF3499). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.	8.49197e-24
NZ_CP027929.1\|WP_137750606.1\|2519610_2521002_-\|large-extracellular-alpha-helical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00243634
NZ_CP027929.1\|WP_137751022.1\|2503471_2504158_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	9.02276e-34
NZ_CP027929.1\|WP_137750602.1\|2509759_2510392_+\|DUF4129-domain-containing-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	1.41974e-05
NZ_CP027929.1\|WP_071919246.1\|2512526_2513828_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.61704e-48
NZ_CP027929.1\|WP_137750600.1\|2504224_2505901_-\|hypothetical-protein	gnl\|CDD\|184183	PRK13615, PRK13615, lipoprotein LpqB; Provisional.	1.58999e-108
NZ_CP027929.1\|WP_036305936.1\|2510388_2511558_+\|DUF4350-domain-containing-protein	gnl\|CDD\|379527	pfam14258, DUF4350, Domain of unknown function (DUF4350). This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length.	0.00289082
NZ_CP027929.1\|WP_081731891.1\|2519299_2519602_+\|hypothetical-protein	gnl\|CDD\|240574	cd12954, MMP_TTHA0227_like_1, Minimal MMP-like domain found in a group of hypothetical proteins from alphaproteobacteria and actinobacteria. The subfamily includes some uncharacterized bacterial proteins which show high sequence similarity with Thermus thermophilus hypothetical protein TTHA0227. However, they do not contain the conserved HExxH (x could be any amino acid) motif. They may not have any zinc metallo-peptidase activity.	3.14438e-11
NZ_CP027929.1\|WP_137750601.1\|2508398_2509763_+\|hypothetical-protein	gnl\|CDD\|370818	pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl diester phosphodiesterase. Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase.	6.30325e-08
NZ_CP027929.1\|WP_023955378.1\|2507575_2508256_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.85715e-87

>NZ_CP027929.1|WP_071919246.1|2512526_2513828_+|DUF58-domain-containing-protein
MYLSGLFVLLVAVGVVPVVLAPAAGLNAAWTALAWLGLCLILAAVDLVFAGPLRAAEIERRIPSRARAGESVETTLLLRNRGGRRIRGSLRDGWQPTAGAGEARAAVDIPAGERRAVPMPLLPRRRGELRSAFVALRSRGPLGLAGRQRVIPAPGALRVLPPFASRRHLPSRLARLRELDGNTSVQVRGRGTEFDSLREYVRGDDVRSIDWRATARAGTTMLRTWRPERDRHVVIVIDTGRTSASRVGDGVRLDAAMESALLLSALAARAGDHVHLLMFDRARRARVTGIDGPRLLPALVDAMAPVEPTLIDTDWNAVLTEVRALTSRPSLVVLLTAQDAPDAARGFLGALPSLTERTTVLVGSAQDAPEPAPVQRTAEDVYREAAVAHATRDAELVAGAIRRAGGEALSATPDALPPAVADHYLALKAAGRL
>NZ_CP027929.1|WP_023955386.1|2511554_2512520_+|MoxR-family-ATPase
MSETAPGDLREAMNRVRLEVGKAVVGQDGAVTGLLIALLGRGHVLLEGVPGVAKTLLVRTFSRAVGLDTARIQFTPDLMPGDVTGSLVYDARTGEFEFRSGPVFTNVLLADEINRTPPKTQAALLEAMEERQVSADGVSRPLPDPFLVAATQNPVEHEGTYTLPEAQLDRFLLKLVIDLPARDDEISVLRRHADGFRPGALETAGVSAVVTVAEIRAAQQAAAAVEVSDDVLGYVVDLARATRQSPSVQLGASPRAATALLAAAKAWAWLGGYPAITPDHVQTMLVPAWRHRLQLRPDAEIEGVSADTILTSVLQQTRVPI
>NZ_CP027929.1|WP_036305936.1|2510388_2511558_+|DUF4350-domain-containing-protein
MSTAPAPSAARRRSRSVLGWAGVGAGLLVAGIAVAAIAGINTMPAQGLLDPEAAGPEGSRALAELLRDRGVEVEIARDRSAALRALDGSDATLAIADTAPLDDDDLVGLRDAASGVVLLEPRTRDLRLLLGAPRSAGFADGATVEPDCDLPAAAVSGPVGPGEVFTADGADHACYPAAAGYGLVASGEGADRVVALDATALLVNQRLADDGNAALGLNLLGSRDTVVWYLPSIGDGSLTGTPSLGELTPPWVTPAILLLLGSAVAAGIWRGRRFGPLVAENLPVTVRASETTEGRARLYAASADPVHALDQLRRETLRRISRALGLGSADAGAIADAAASRIGDDRTRVRGILIDDLPRNDRDLVDAADRLRDVEAAVLRSVRPERNTP
>NZ_CP027929.1|WP_137750602.1|2509759_2510392_+|DUF4129-domain-containing-protein
MRLLATPVAPDPDEARRWAEEELSKAAYREAEPTPIDRFARGVVDFLAALFNGQVPATLGPWLAVGAIVVLLVLVAVAILIWGRPRTVVRSRASVPLFGEDETRSADQMRAEAADAAGRGAWDEAIVLRVRALARGLAERTIVDPAPGMTVHRFAADAGRIFPAESEELDRVARVFDDVRYLRRPGTAEAYATVRALDERLAAARAEVPA
>NZ_CP027929.1|WP_137750601.1|2508398_2509763_+|hypothetical-protein
MTSYPAWTPAPRPGIIPLHPLSFGVILGRSFSALRQNPKVLLGFALVVQTVAILVATAGIVAVGFATFGRLASLRPGTDEFETVLAGSIAISGATALVLSLAAGALGVIVQGVVVSEVAHAVVAEKHTLGGLWHRVKPVAWRLIGYSALVFLIVVVVIGILTAGVVGLAMSVGPAAIVLAIILGLSAIPLSLWLSTKLLLVPSVIVLEQATVFGAVARSWRLTRGRFWPTLGIIVIISMSFGILAQVISVPFSFVTMGLTSVITPTGDPEPGQIIALLVGTLLAQAFVTLIQTIAVIVQSTAGALVYIDCRMRREGLDLDLSSYIDQRDAGIAAPDPYRRNVGRVLDGRWQQPPAYAGAQSGAAYPGQPGYAGPAGYAAPAGYAAPSGYAAPSGYATQPGYAAPAGYQPPSPGEPPAPAPAPAPAPAETSGETPAAPADRPSSTDWTAPGADRA
>NZ_CP027929.1|WP_023955378.1|2507575_2508256_-|response-regulator-transcription-factor
MTSRILVVDDDTALAEMIGIVLRTEGFDTVFCADGAAAVETWRSEKPDLILLDLMLPGVDGIEICTQVRAESGVPIIMLTARTDTADVVRGLESGADDYIVKPFNPKELVARIRTRLRPAVASASESLRIGDLVVDVEGHEVRRGADVIALTPLEFELLVALASKPQQVFSREMLLEQVWGYHYKADTRLVNVHVQRLRAKVEIDPDNPRIVTTVRGVGYRAGAVI
>NZ_CP027929.1|WP_023955376.1|2505897_2507568_-|HAMP-domain-containing-histidine-kinase
MPIRTVTTATVATRGWRSWGRRLARTWRRSLRFRTVAITLGATALTITVALVWMSLAIQNDLFESRTSQLLAEAQRATQSAQATLDAAEVGGDVVAVDNLMESVRTSIQRQSSTDRIAAFRISSEPSAIAPQDFDSAGLPADRISDELRAQVQSDDELQWWQPVGFAASAGGQVPGIVVGQQIVLPEVGAYELYLGYDLASEAQTLAFVQITLWIVGVGLVVLIGAISWIVLRSVTEPIAQAAESSSRLAAGDLAVRLQVRGEDEFATLGRSFNAMADSIEAQIKELAELSQVQQRFVSDVSHELRTPLTTIRLASDMLNDRREDFDPVAARAAELLHDQVHRFEVLLTDLLEISRYDAGSVQLESEPTSMTQLAEDVIASMAQLAEQHGSDVRLVAPGGYSPVEMDPRRVRRIVRNLLGNAIEHGEGRPIVVSVDSDARAVAIGVRDYGLGMRPADAERVFDRFWRADPSRKRTIGGTGLGLSIALGDARLHGGTLAVWSELGRGTNFVLTIPRRSEPLDGHSPLPVDPGEDGVPFDDLGLTQPISLPRPAKGSS
>NZ_CP027929.1|WP_137750600.1|2504224_2505901_-|hypothetical-protein
MKRLRSVAAVLGMLFALLLAGCTGLPTSGPVVAGAPIDQEAGAVDFSFLPDDPPPGATPQQIVAGFLAAGSGPRDDWGTARQFLAPDFRSSWQPTARATIDLPGERVYTVAGDGTVTVAITPEAAVDATGAMSVTDGGSMPLDFSLVEVEGEWRISNAPDGVVLDRARFQAVFREYSVMYFDRSWTYLVPDRRWFPATNAATHITEALIDGDPSPWLSGAVYSAFPESLELATRAVPLEGGVAQVPLSQSALAIVPETRNRMQAQLDASLQSAGIRGAQMSVDGEPVAAQAVDVRPIRVDVRPAVLTEDAFGFLSGSEIEPLPGLSAVLPGLGPESIQLGADRSTAAIRTSAGAVVRVRDDATSEIVDERTGLIDPTIDPQGFIWSVPSGEPSGLTATGPDGTVVSIANAWPGASQISSIEVSRDGTRIAALVRDGSRPALWIAGILRDDDGAPAGLGDRETVALLPGTGIDASWVDGSTIAVLAEDGDADVVISQSVGGFGEEIVAPAGPVAIAATNQLRAVRLLDGEGVLYAQKGQAWPTVAGGIRVLATQQGAPR
>NZ_CP027929.1|WP_137751022.1|2503471_2504158_-|ComF-family-protein
MRRQHGGVQPDPLRRGPWREHLADALDLLMPVWCAGCDAPGRPLCEICAAEIARPHRHDADGLEVRSVARYEGTAARVVRALKEDGRTGLARPLGALMADLVRQAGWADAVLVPVPPSRAALRRRGYAVPELLARRCEARVGRWLRWRGRALDQRLLGRAERERNVAGAFLARPGTGAVVIVDDVMTTGATLRAARNALSAAGLRVVGAVVLADTPLRVSAEGIPGGS
>NZ_CP027929.1|WP_137750599.1|2502715_2503378_-|ribosome-associated-translation-inhibitor-RaiA
METSIVGVGVGITDRFRTVAEEKSSRIETLAPRAQRLDIKVTHHAYRNGRMDDETVELTLTGKGPIVRAEATDGDKFVALDLAVDKLVEQVRRAKDKRVDARNHPRGAKLDKGTGALEGIDVEPASVEVLRAVATGEVPVVGDSADEDDYTPVVIRTKEFGAEWMTVEEAVDRMELVGHDFFLFINARTDHPSVVYRRKGWDYGVISLTAAAPPETELAS
>NZ_CP027929.1|WP_137750603.1|2514147_2516493_-|catalase/peroxidase-HPI
MSDRDQQSAPIGEDVTDTDQAVTPIDTPEDERADGETRPRSNDAGGCPVIHGGEQGQGHGHGSHGGQPHPTVGNANHVWWPNQLNLRILKKNPAVANPVGEDFDYKAAFESLDLAAVKKDIEEVLTTSQDWWPADFGHYGPLMIRMAWHSAGTYRVTDGRGGGGAGQQRFAPLNSWPDNVNLDKARRLLWPVKKKYGQSISWADLMILAGNVALESMGFSTFGYAGGRPDVWEPDDDVYWGPETTWLADERYSGDRDLEKPLAAVQMGLIYVNPEGPNGEPDPLKSARDIRETFGRMGMNDEETVALIAGGHTFGKTHGAAPDSNLEDNPEAAGVEMQGLGWKNNFGTGHGDDTITSGLEVTWTYHPTRWDNEFFHILYAYDWELMRSPGGGHQWRPVNGAGADMVPLAHSNGRREPRMLTSDLALRMDPAYDAVSRRFKDDPVAFGDAFARAWFKLTHRDMGPIARYLGPEVPQEELIWQDPLPAVDHELIDDADAADLKARILATDLTVSELVSTTWAAASTFRGSDKRGGVNGARIRLAPQKDWEANNPAQLQRVLGVLESVQASFNDGRADGKKVSLADLLVLAGNAGVEKAARDGGVEVTVPFRPGRTDATAEQTDELSFSHLEPVADGFRNYYGPNAFLPAEHHLIDKANLLTLSAPEMTVLVGGLRALGANYDGSSFGVFTERPGVLTNEVFVKLLDLGATWKPLDPGSHAFRGVNADGSEIGIGTRVDLLFSSNSELRAIAEVYASDDASEKFVRDFVAAWTKVTELDRFDLR
>NZ_CP027929.1|WP_088380519.1|2516533_2516971_-|transcriptional-repressor
MTIATAPEAIRASGLRVTESRSAVYAALRARPHASADEVYAAVAERMPQTSRQSVYNALNDFADAGLARRIEPAGRPMLFELRVGDNHHHLVCTACGRVEDVDCAVGHTPCLHPSDDHGFEVASAEVTYWGRCAACAASATPAAS
>NZ_CP027929.1|WP_137750604.1|2517030_2518026_-|stage-II-sporulation-protein-M
MDLDALVAARRAEWDRLDALGRARRLSSDEVDELVTRYRAASADLADIKTSAGRSVEGDRLSMILSRARLRLTGAPENVLRQLPRFFVHQLPAALYRVRWTTLAVAVAFVVISSLVAFWVSGDPAAVAALGSQAQLEQYAKNDFTAYYSENPAAVFAGTVWTNNAWIAAQCVLFGITGLWPVMVLMQNAVSIGQAAAILISFDRGDVFLLHIAPHGLLELTCIFVAGATGLHIFWAWIAPGRRSRGEALAAAGRSLATGAIGLILALALSGLVEGFVTRQPWPWPIKIGIGALALAVFLAYMLVLGRAAARRGETGDLTEYEAGTPRLVAG
>NZ_CP027929.1|WP_137750605.1|2518042_2518903_+|RDD-family-protein
MTTPAPPVQIRQDEILTGEAVALDVQPLGFFLRALGALIDVLCGIALLLLFFFVGGFVVGGLGLESLSGILVVSALVLVLVVIPTAVETLSHGRSLGKLAVGGRIVRTDGGATGFRQAFIRALVGVLEIWFTFGALAGVVAAFTPRSTRLGDMVAGTYCERTRAPRLPPPAGPVPIELREWSDVADVARLPDRVARRASQFTRSAEGMEPAARLRSATMIASEVAPFVSPLPQTDPETLVRAVVAVRRDREYAAIQRIDDRARALVGAAPETPRGFPVRPEASRDG
>NZ_CP027929.1|WP_036305938.1|2518874_2519081_-|DUF3499-family-protein
MRERLCSKVGCAREAVTTLTFDYGDQMAALGPLGGGTDPHAHDLCAIHTERLSVPKGWVVIRHETLRV
>NZ_CP027929.1|WP_081731891.1|2519299_2519602_+|hypothetical-protein
MSVGTAAEFLRSAWPELREVRFEVAGMPAASDEDGIPRWQVFAAEKRIVLYRLPIERLNRLHRNDDLHRRMMVESCVFRAAAEYLDRDPWDLGPDRFRFL
>NZ_CP027929.1|WP_137750606.1|2519610_2521002_-|large-extracellular-alpha-helical-protein
MNTRTALVTRLAAGAVAAAVVGGGVIVAAAAPWPTLAREPMSLDVVPEAARSVAACDGPLLALGRDATAAGAITAAAPSSVVSAADSGDPTSYTLATPDRADEGAPPAAFSAEPTGGVPTDLGAASSASLDDPDLRGLAVSACTRPAMESWLVGGSAATGASDLVLLTNPGDVAATVDLRVFGADGAQDPVAGRDIVVAARSQRAIPLAALRRGEQSPVVQVTAQGAPVRASLQSALTRTLIAGGVDQVGASALPATQQVIPAVDVTVAPDSVASAGGMSVRLMATAADTLASVTVRSVADGSVVSQQDAIALAAGRPLELEVTGMPVGEYTVTATAADPLVAAAWTSTDQATPADFAWAVGAPLVDAPTLVAVAPGPGPTLTLTADQETAATLTPVSGGESQTVQLAAGQSRTIDVAAGTVYRLDPGPGGIRGSVGFSGAGQLGTYPVTGSAAAAAELTVYP
>NZ_CP027929.1|WP_023955403.1|2520998_2523839_-|glycosyltransferase-family-2-protein
MPARVHALLVVRPDGRTPAAFHLMRTLAALRDQTRAVDALTIVLCGGDQRLRTLAEESGAEAVISAPARTGFAAALRLASRRIDGDAIWLLAQDVAPEPEALQRLAAALETAPSVAIAVPKLVEWDDNTRIVSLGRSMTRFGAAVGLADGEHDQGQHDGTDDVLGGDVRGLLVHTAAWRELEGLDEALAGADEGLDLGVRVRLAGGRVVLAPGARIAVAHDGVAGAPAPRTTAARARAVHAARVAQLHRRLVYAPPPAVVLHWLSLLPLALWRSILHLVGKRPARIGPEWSAAAVVMVRLPAVTRTRRRIARHRRASWSQLASLRVSSRVMRQRLIEDQPAGDGPRRTELGFFSGGGAWAVLAALVVSIASMPAALSWPSIGGGALAPLAASAARAWSEATGAQRPLGWDAVGPADPFSAVLAVLASLSPADPSRALVVLWLLALPLAVLGGWFAATRITERPVLRIVGAVTWALAPMFLVALGDGRPAAVIVHLVLPWLAFTAAAAHRSWGNAGTASILLAVVLACSPVLAAPVVVIWVFAVVLSMVLRGRRAAFRWLWIIVPSVALSAPLVFARLRVGDPWSLLADPGVPWSGPRFADDVLGRFLLAAGFPADAGWAAFTGAAGPLWWLILFTAPLLALTLAAAMSARRFVGIVLLAIAGLGVATAFAAAGVAVVIDGTTAIALWPGAALSLAWVGVAGGALLTLDSVVPARVVRAAAAGLAVAGLVVAAVPMLTSHAREASVVGRGATSTLPAFVAAEGANSPGLGTIVLTPTDDGVAVDVVWGGSATLGGQSTLVTARTELTDADREAAQVAADLVADTANDVVAELRDHGVAFILLASSGDDESAAARSTRLAAATALGGRDGLDAVGSTDRGELWRLSGDIAPRAEAATSARAVASAAWSGIAAVFAIALLLALPTRGSRSASRAAPRLVGIRPLRRRDR
>NZ_CP027929.1|WP_023955405.1|2523928_2524249_-|WhiB-family-transcriptional-regulator
MTAYRSGVPDNWFVDPVNLGVPGVRRVDTDGDDNALAWQTDALCAQTDPEAFFPEKGGSTRDAKRICTSCDVRGECLEYALQNDERFGIWGGLSERERRKLKRRAV
>NZ_CP027929.1|WP_023955407.1|2524393_2525566_-|mannose-6-phosphate-isomerase,-class-I
MLIPISNIARDYAWGSETLIAELQGREPSGAPEAEIWFGDHPGSPSRVDDGTGRPLNLALSEAGIPPLPYLLKILAAATSLSIQAHPSREQAAVGFAREEAAGIPRDAAERLYRDENHKPEIIVALSESFRALVGLRPVVDTQRLLASLGAGGGVGALSAALTPTDAEDEPAALRRVIGWALSGEAADVVTDLSAALERSAGDAADASDFAAERRVLREIAAAFPDDAGLIVATLMNLVELRRGEALFAPAGVLHAYQDGLGVELMAASDNVLRGGLTPKHVDVPELLQVVSTASGPAPIVEPVEVAPGVFGYDVGVPDFRLARVETTFEAVTEIALAGPAVVLATGGDIVVEADGERVELVPGTAAVVSAASVAIGGAGEAFVAQPGGE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

322104 : 329559

Pandoravirus(33.33%)

protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137749819.1\|322104_323700_+	peptidoglycan DD-metalloendopeptidase family protein	L7THA7	Mycobacterium_phage	6.4e-15	41.6
WP_064956402.1\|323781_324315_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.5e-32	47.7
WP_137749820.1\|324474_325476_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_023952935.1\|325485_326037_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	7.6e-08	27.4
WP_023952934.1\|326134_328150_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5ESM9	Bathycoccus_sp._RCC1105_virus	2.9e-105	45.1
WP_023952933.1\|328159_328750_+	GTP cyclohydrolase I	S4W0A0	Pandoravirus	2.4e-28	45.2
WP_137749821.1\|328746_329559_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	5.7e-20	32.0

DBSCAN-SWA_2

1599360 : 1608616

Microbacterium_phage(57.14%)

head,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137750281.1\|1599360_1601511_-	hypothetical protein	A0A142KC22	Gordonia_phage	7.5e-35	37.0
WP_137750282.1\|1601708_1601912_-	hypothetical protein	NA	NA	NA	NA
WP_137750283.1\|1601938_1602337_-	HK97 gp10 family phage protein	A0A2R4A079	Microbacterium_phage	2.3e-22	51.3
WP_137750284.1\|1602340_1602997_-	hypothetical protein	A0A222ZEQ0	Arthrobacter_phage	1.5e-07	33.3
WP_137750285.1\|1603010_1603391_-	hypothetical protein	NA	NA	NA	NA
WP_137750286.1\|1603390_1603702_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_137750287.1\|1603712_1605293_-	hypothetical protein	A0A2R4A075	Microbacterium_phage	9.2e-75	37.5
WP_137750288.1\|1605285_1606476_-\|portal	phage portal protein	A0A2R4A099	Microbacterium_phage	3.1e-67	41.9
WP_137750289.1\|1606539_1607979_-	hypothetical protein	A0A2R3ZZF5	Microbacterium_phage	1.1e-114	47.2
WP_137750290.1\|1607971_1608265_-	hypothetical protein	NA	NA	NA	NA
WP_137750291.1\|1608355_1608616_-	HNH endonuclease	A0A125RNK0	Pseudomonas_phage	6.1e-08	46.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027929

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection