CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040244	Streptomyces exfoliatus strain A1013Y chromosome, complete genome	17 crisprs	csa3,cas3,WYL,DEDDh,cas4,Cas14u_CAS-V,DinG,c2c9_V-U4	4	7	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040244_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_1

154356-154499

Orphan

Consensus_repeat	Method
CCCGTTCCACTGCGGCGGTGCCCGCCCCTACCCGGCCACCCGCCTCCGTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040244_1

>merge|NZ_CP040244|1|154356-154499|PILER-CR
GCGGTGCCCGCCCGTACCCCTCCCGGGGTTGTGGGCCTCGGTTCCGCTGTGGCGGTGCCCGCCCCTACCCGGCCACCCGCCTCCGTTGTGGGCACCCGTTCCACTGCGGCGGTGCCCGCCCCTACCCGGCCACCCGCCTCCGTT

>NZ_CP040244|1|1|154356-154499|PILER-CR
GCGGTGCCCGCCCGTACCCCTCCCGGGGTTGTGGGCCTCGGTTCCGCTGTGG	CGGTGCCCGCCCCTAC
CCGGCCACCCGCCTCCGTTGTGGGCACCCGTTCCACTGCGGCGGTGCCCGCC	CCTACCC
GGCCACCCGCCTCCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137988338.1\|149678_150668_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988339.1\|150680_152153_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP040244.1\|WP_137988344.1\|159553_160420_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|366444
NZ_CP040244.1\|WP_137988335.1\|144372_145506_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NZ_CP040244.1\|WP_137994581.1\|157685_158255_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994579.1\|152351_154292_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|130728
NZ_CP040244.1\|WP_137988340.1\|155241_156246_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP040244.1\|WP_137988334.1\|143722_144376_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040244.1\|WP_137988343.1\|157323_157737_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988347.1\|162286_162475_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182059
NZ_CP040244.1\|WP_137988337.1\|147569_149618_+\|PhoX-family-protein	unknown	unknown	gnl\|CDD\|253386
NZ_CP040244.1\|WP_137988332.1\|141012_141855_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293795
NZ_CP040244.1\|WP_137988346.1\|161111_162188_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274934
NZ_CP040244.1\|WP_137988342.1\|156699_157122_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994580.1\|154974_155214_-\|DUF2630-family-protein	unknown	unknown	gnl\|CDD\|378515
NZ_CP040244.1\|WP_137988333.1\|141990_143607_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NZ_CP040244.1\|WP_137988336.1\|145472_147287_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|378410
NZ_CP040244.1\|WP_137988341.1\|156250_156703_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988345.1\|160481_161108_-\|FMN-reductase	unknown	unknown	gnl\|CDD\|274935
NZ_CP040244.1\|WP_137988331.1\|140359_140569_+\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137988339.1\|150680_152153_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.14953e-31
NZ_CP040244.1\|WP_137988346.1\|161111_162188_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274934	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. This tightly conserved subfamily of the bacterial luciferase-like monooxygenase (LLM) family, with members showing > 60 % pairwise sequence identity, includes proteins from both species with and species without the ability to make coenzyme F420. Therefore, the like cofactor is FMN rather than F420. The presence of three members in Kineococcus radiotolerans SRS30216 and two in Saccharopolyspora erythraea NRRL 2338 suggest closely related (subfamily) rather than exactly conserved (equivalog) function. Gene neighborhoods around members are not conserved. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP040244.1\|WP_137988335.1\|144372_145506_+\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	1.91559e-43
NZ_CP040244.1\|WP_137994579.1\|152351_154292_-\|FUSC-family-protein	gnl\|CDD\|130728	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family. This model represents two clades of putative transmembrane proteins including the E. coli YccS and YhfK proteins. The YccS hypothetical equivalog (TIGR01666) is found in beta and gamma proteobacteria, while the smaller YhfK group is only found in E. coli, Salmonella and Yersinia. TMHMM on the 19 hits to this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane.	2.03049e-36
NZ_CP040244.1\|WP_137988340.1\|155241_156246_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	1.0544e-16
NZ_CP040244.1\|WP_137988334.1\|143722_144376_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.33743e-64
NZ_CP040244.1\|WP_137988344.1\|159553_160420_+\|ABC-transporter-permease	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	3.18289e-22
NZ_CP040244.1\|WP_137988347.1\|162286_162475_+\|hypothetical-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0.00552407
NZ_CP040244.1\|WP_137988337.1\|147569_149618_+\|PhoX-family-protein	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	0
NZ_CP040244.1\|WP_137988332.1\|141012_141855_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293795	cd07709, flavodiiron_proteins_MBL-fold, catalytic domain of flavodiiron proteins (FDPs) and related proteins; MBL-fold metallo-hydrolase domain. FDPs catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively. In addition to this N-terminal catalytic domain they contain a C-terminal flavin mononucleotide-binding flavodoxin-like domain. Although some FDPs are able to reduce NO or O2 with similar catalytic efficiencies others are selective for either NO or O2, such as Escherichia coli flavorubredoxin which is selective toward NO and G. intestinalis FDP which is selective toward O2. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. Some members of this subgroup are single domain.	7.35545e-16
NZ_CP040244.1\|WP_137994580.1\|154974_155214_-\|DUF2630-family-protein	gnl\|CDD\|378515	pfam10944, DUF2630, Protein of unknown function (DUF2630). This bacterial family of proteins have no known function.	6.28125e-30
NZ_CP040244.1\|WP_137988333.1\|141990_143607_-\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP040244.1\|WP_137988336.1\|145472_147287_-\|VWA-domain-containing-protein	gnl\|CDD\|378410	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus. vWA domain fused to TerD domain typified by the TerF protein. Some times found as solos.	8.5082e-39
NZ_CP040244.1\|WP_137988345.1\|160481_161108_-\|FMN-reductase	gnl\|CDD\|274935	TIGR04037, predicted_flavoprotein, LLM-partnered FMN reductase, CE1759 family. This family represents a distinct clade within pfam03358. That family includes enzymes such as the NADH-dependent FMN reductase MsuE. Members of the present family regularly co-occur in genomes, typically as gene pairs, with members of TIGR04036, a probable FMN-dependent member of the bacterial luciferase-like monooxygenase (LLM) family. At least one member, RF\|YP_001509627.1 from Frankia sp. EAN1pec, is fused to the LLM protein. The function of these gene pairs is unknown.	1.23573e-97
NZ_CP040244.1\|WP_137988331.1\|140359_140569_+\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	7.84352e-18

>NZ_CP040244.1|WP_137994579.1|152351_154292_-|FUSC-family-protein
MAPPPWLTAGLRPQPTPIPWAAVARASIALAAPLAVGFAADRPVYGALVSMGALSGVIGDTADAYRMRFYNIAVPQLFGALGVTLGSLVFGQGWLAVVVLTLIALVSGMISSIGAVASVSGLLLLLNAVVGAGLPLPEPWWTAPLLLSLGGVVVLVLTLLGWPLRGGVPERTAVAGTYRSVAELLEAAGSDAYDEKRRAVTASLNQSYDLVLARRARVHGRAPALVRLLSQLNVVIPLVEAAPAAHLAALRFHRPLPAEIPAAVRELAEAVEEGRTGTPVLDLPEASRPSEKAVDHALRHAAAVVHKAEPNPYNVDDRLGRPAALRVRARRTARAVLVSEASWRYGLRLALCIGLAQALVSLVDVPRSYWVALTVTFVMKPDFGSVFSRAVLRALGTAAGLVIAAPLLAEVPRGWWDVPVMLALGALIPAFSAKGYAFQTAAITPVILLLSDLLNRQGVDLVLPRLYDSLVGCGIALVAGYLLWPESWHSRVGDRLADAVADCAAYVTRAFCSPEEEDQGARVRARRALYRDLSAVRSEFQRALTEPPPTGTVAAAWWPLVVAVERIVDATTAARVRVNHGAPAPAPEEVAAVERQLRELADGLRSSDVLVEVRAELTGDEEGVLAPLRQEVRAARAIASPRGEAD
>NZ_CP040244.1|WP_137988339.1|150680_152153_-|APC-family-permease
MRTTTGRGLQPNVLGTFDTVVMAVAGSAPAYSLAATTAVLFGAVGVAGPAALLYCAIPMFGIVLAYARLGRIDVNAGAGYSWVGRTLHPFLGFLSGWALVVSATVFMVAGSLPAGTLTLSLVAPSLAGSTPLAAAVGAGWFLVMLLVVLAGARLTVRAQLLMSGVEMLILVVFVVAAVLHRGHATAFDWSWFGFGHFDGPAGFASGALIAAFYFWGWDVTSNLSEETRDSRRTAGLAALIGVGVVFLLFEAFTVAVNVLLSAGQIESAGANVLAVLGQEIWPGVGGKLLIVAVLLSTVATLETTLIQVTRSLFAMGRDRTLPAALGTVHRRWNTPWVAIAAVGAAALLMFCAAAAAGSVGQILSDAVNAIGLQIAFYYGLAGLAAVVAYKSLLLTSVRNFLLGGVWPLLGAAFMLWAFVESLGELSTTALVIGLGGLLVGVVPMVVHWRKGSAYYRPARLDAVRALAAAGPFAPTTPRARRADESLATDF
>NZ_CP040244.1|WP_137988338.1|149678_150668_-|hypothetical-protein
MAALRRPARSSRPARFTPDLDPDFGDRALTEARHDIVIGRWQGVRDLLRDTGENWPRRTHRVRLLAHAAAGSSTVEAWRAAEPDSPDAAVLRAATEVVRIFDTAIAAGRGTAVDRGRLDATVDACLAAARAAPADPMPWVSLLSVARLYEGGVPRRELRQWFDELRRRDPYNTEGHAQVMRYWSARWHGTHGAMYDFARDAAGVAPPGSPLPVLVQVARVEEYRYIADGALGRGPVRGFDQHWKHELAVTELRRTHARWIGGREPGAPVAPEEVADLNYLAHAACYAGQAEVAREVLGMLGARASWVPWSYTGDPQEQFTRFREGLGVV
>NZ_CP040244.1|WP_137988337.1|147569_149618_+|PhoX-family-protein
MRKLLPLLSTNPHGGGRSALTCRFRCGDACFHEVPNTSDNEYVGDVIAGALSRRSMMRAAAVVTVAATAGTAVAVGNAPAAEARTHKPQKPGRVDGARGLRFTPVAPNTADQVTVPAGYEQNVVIRWGEPILRGAPAFDADKQTAAAQAGQFGYNNDFLSLLPLRGEHGRQLLVANHEYTDEVLMFKGYDAENPTREQVEITWAAHGLSVVVVQEEHRSGRLTPVTRHPLNRRLHTTSEFEVTGPAAGSKLLRTSADPSGRKVLGTLNNCAGGTTPWGTTLHGEENFNQYFANGSSATDKRYGMGSGPSERKWERFDKRFDLAQEPNEAHRQGWVVELDPYDPDSTPKKRTALGRFKHEAAQPRLTADGRPVVYMGDDERFDYFYKFVSSKRMMKGSSRKAREHNLTLLDEGTLYVAKLTGDSPGEIDGTGKLPNDGEFDGSGQWIPLATNDVSHVPGMTAEDVYVFTRLAGDKVGATKMDRPEDVEPSPRSGRVYVALTNNKDRGKEGKAPADEANPRNANKHGQILELAEHWDDPASDGFAWRLFLVAGDPNDPATYFAGFPKERVSPISCPDNVAFDPHGNLWISTDGNQLGSHDGLFGVATHGERRGELKQFLTVPAGAETCGPIIQDRRVVVAVQHPGEIDGASVENPKSVWPDGPGKIVRPSVVAVWRKDGRDIGV
>NZ_CP040244.1|WP_137988336.1|145472_147287_-|VWA-domain-containing-protein
MGIRSLLRKVFGRDRADQHDETPATSVPPQADRATPPEEPASVTLPSPTPAESATERATTDTAAKRAADDLVAAAFDNPKVPNARPSEPEGTVASASEPEDTATAASEPEPEPETADPTTEPATKAALPAQAVTEPKTEDAPATADTPEPEAIAAAEAEPAEEEAVAAAAEPAEQVTAEPETESAPEAELASAVKPAEEAEAEAEAAATAADPEQQGAAEPETESAPEAELASAVKPAEAPAEQEPIAAAAEPQAPEAEAVATPADPAEQVTAEPETESAPEAELDSTVKPAEAPAEQEPIAAAAEPQAPEAEAEAEAPAPEAVAVPVAEDEATPEPEAQDAPVAVPVADDEATPEPEAQDAPVAVPVVEDDATPEPEAQDATGAGPATPLAQVKAQAPHLVEAYKAAGSVLKKQGLDGARAAVYLVVDRSGSMRGYFKDGSVQRLAEQAVALAAHLSEDSTATAVFFSTDIDGTAELTPATLTETAVETINAGLGRLGRTNYHRAVEEVLAHHEKADPTRPAFVVFQTDGAPESKTAATQALAEAADRPIHWQFVAWGEEDNKAFDYLRKLTAPRTGHFLAGPTPAETAHPAFYRGLLADWQV
>NZ_CP040244.1|WP_137988335.1|144372_145506_+|HAMP-domain-containing-protein
MIGSGSTIRTRIALVYGGVFVVLGGCLLGVVNLLSRAGTEGEAQAIAARVRVVAPFENVTTTTAYRLSDDVSRAAGEQMLMWSCLALVVMAFGAVAVGWWTAGRVLRPVHEMTARARKLSERNLHERVAAGGPDDELKELGDTIDALLGRLEAAFDSQRRFIANASHELRTPLATQRTAIQVGIDDSSEVKQVLLDSNRRSERLIEGLLMLARSERGLEEREDVRLGAVVAEECETYGVEAATGEAGVVRGSRVLLGQLVRNLLANAVTYNVPGGGVVEVRVEGGVLTVVNTGPVVPAGEVPALFEPFRRGEGRDRMGPGAGLGLSIVRSIAAAHGGTVSAVARAGAAGGGLAVTVDLPVHGHATRGQTCQSASSPR
>NZ_CP040244.1|WP_137988334.1|143722_144376_+|response-regulator-transcription-factor
MRVLVAEDEEVLAELVATGLRRAGFAVDTVYSGDAALAYLGLHDYDVVVLDRDLPRVHGDDVARELVAGASRTRILMLTASATTEDRVEGLDLGADDYLGKPFEFPELVSRVRALRRRSARPVPPLLERAGLRMDTVRRTATRDGRDLDLSPKEFSVLQILLEADGATVSAEELLERAWDAHTDPFTGAVRVCMSKLRGKLGEPALIRTVQGVGYAL
>NZ_CP040244.1|WP_137988333.1|141990_143607_-|methionine--tRNA-ligase
MAATGSEKQGANGVKSFYVSTPIYYVNDAPHLGHAYTTVAGDVLTRWHRQRGEKVWYLTGTDEHGQKIMRTAEANNVTPQAWCDKLVEEAWKPLWEHLNIANDDFIRTTEKRHTDRVQEFVQDLYDKGEIYKGGYEGPYCVGCEEYKLPGDLIEAEDGTKLCAVHKKPVEILKEENYFFKLSAYGPKLIEFYESNPGFIQPESARNEVLNFVKQGLEDLSISRSTFDWGVPVPWDEKHVIYVWIDALLNYATAVGYNENPEKFNETFPANVHLIGKDILRFHAIIWPAMLMAQGLPVPGRVAANGWLMVGGEKMSKSNLTGIKPQDLTSHFGVDAYRWYFLRAIAFGQDGSFSWEDFTARYTSELANDYGNLASRVAAMVGKYFDGALPAAAADGDAEKAIHEGLAKAVATADRKIGEELDFQGGILAIFDFVKQVNGYITEQEPWKVAKDDSEAGRARLATILYTAAESLRGVAVLLNAIMPETSQKLWDSLGAEPALGPLPSQPLAAAGEWGKLPAGATVTKGAVLFPRLEEPKTA
>NZ_CP040244.1|WP_137988332.1|141012_141855_-|MBL-fold-metallo-hydrolase
MTTAEGIFEPKVEPYKVAQDTFVIPQLLEAPPVGMFYVNSMVITGNEPVLVDTGAPSNRQQWLAHAWSIVDPADVRWVFLTHDDHDHAGNVREVMAACPNATLVTTWFSMARYAIDTEEFWMPFNRSRWVRDGESFQAGDRTLLAVRPPFFDNPTTRGLFDSTTRVYWAADTFATALPHPVENAADLDREAWREGMLLGNRLNHPWHLWLDTGKFNEHVNHVQALDIDVAASCHGPAIHRDLMDEAFELIRKVPELPSWEEPGQDFLEGIIAATAKPVVS
>NZ_CP040244.1|WP_137988331.1|140359_140569_+|DUF397-domain-containing-protein
MIRKPSVGDASEPAWFKSSYSDGNEGDSCVEVATTPGTVHVRDSKCTDGPQLALMQDAWADFVSYASGY
>NZ_CP040244.1|WP_137994580.1|154974_155214_-|DUF2630-family-protein
MYDDEQILENISALVEEERALRQRTGGLLAEERTRLAELEVQLDQCWDLLRQRRAKAEFGEDPDTAAVRPASEVEGYRS
>NZ_CP040244.1|WP_137988340.1|155241_156246_-|endonuclease/exonuclease/phosphatase-family-protein
MAITEATAAEPAPPLVRPRHRVTAWAAGLLVAVPALITGCRILGTDAISPVPQLLSFLPWLTLPAALALLLALAARRRPLAGVAALVLAATAWCVLPYGPDTTTARGPVVERLRVLASNVEFGGATEALAEAVRRERPQLVYVSECDRACVRTLTAELGADHPHRAVVDGEGSTGSLILSAYPLTARPPIPAAMGMPGATARIGGRDVQLRLAHPMPPLPGQVDVWNGELDRVERFAAEHRDTGPVVLAGDFNASQDHAAFRSVLDAGRLHDAARLAGASRTPTWPQGASLPPYVQIDHVLVSDDFRVRGVRFLDLAGTDHRAVLAELDLHSGR
>NZ_CP040244.1|WP_137988341.1|156250_156703_-|hypothetical-protein
MTRTRTGAPVRALAVATAALLALAVTGCTEEDQQKAEDIVASATAAVASAAQEKMNEVKDGVKATGDVKAGPTEEDGDRTISEITATNPADKSADYTIMVNFRDGEGNLLDVVVLNIDGVEPGQSKTGTARSNRTLTGSTTAEIGQALRH
>NZ_CP040244.1|WP_137988342.1|156699_157122_-|hypothetical-protein
MSQNTAPRTQSTGDSWTSGGTLFAGVLMVVIGIVDILQGIVAIAEDEVFTRVGDYVFKFDLTAWGWIHLCLGVIVALAGFGILKGTAWGRIAGIALASLNIIAQFLYLPYQPWWALFSMAVSVFVIWALATHETYGKDTV
>NZ_CP040244.1|WP_137988343.1|157323_157737_+|hypothetical-protein
MAAHAAVPVRRRTSTPGWALPATLGAVYGLYTSFMARGEGVGSWGQFLYGIVSAVALAGAVYALRREGHVLPRELRATAWAALAGIAIGFLFSLSDASVVSSTVLGLVVAAGMFCASFYFFYTHEDAAGRPVRGAPS
>NZ_CP040244.1|WP_137994581.1|157685_158255_-|hypothetical-protein
MKPKTRPKALADVPRWAVLAAHAVPLLVLPSGLWRIALGLGAPVVQHADTDPGTGGLPYLVALTALSELLAFLTLGLVRSWGEVFPRWIPFLGGRNVSVSAATATALAGAAGLYGLMGWYAYAAYAGLGGPDGRMRTDALQEAVFAGCYLPLVAWPVLLTAVAIAYHRRRTGRYDGAPRTGRPAASSCV
>NZ_CP040244.1|WP_137988344.1|159553_160420_+|ABC-transporter-permease
MTTVTTGKDTQTADALDFVAPKADELAALLVGQSRPPRPSALSASLTFGWRAMLKIKHVPEQLFDVTAFPIMMVLMYTYLFGGALAGSVSAYIQFLLPGILVLSVVMITMYTGVSVNTDIEKGVFDRFRTLPIWRPAPMVGYLLGDVVRYLVASAVMLTVGVIIGYRPHGGAVGVLLGVALLLVFSFAFSWIWTMFGLLLRSEKSVMGVSMMVIFPLTFLSNVFVDPRTMPGWLQAFVNNSPVTHLSTAVRELMAGNWPAADIAWTLGWSALFVVVFGAVTMRLYNRK
>NZ_CP040244.1|WP_137988345.1|160481_161108_-|FMN-reductase
MQTLKLVAVSAGLSSPSSTRLLADRLTKAAEGRLTEQEYAVEVQVIELRDLALDIAKNFVSGFPSEQLGAAIDAVTGADGVVAVTPVFTASYSGLFKSFFDLIDPDALTGKPVLIGATGGTARHSLVLDHALRPLFAYLRALVVPTAVYAASEDWGSGGDEYTEGLPSRIRRAGHELADLVAARGPAGDADDDELVPFERQLADLRLD
>NZ_CP040244.1|WP_137988346.1|161111_162188_-|LLM-class-flavin-dependent-oxidoreductase
MQFGIFTVGDVTTDPTTGRTPSEHERIKNTVAIALKAEEVGLDVFATGEHHNPPFVPSSPTTLLGHIAARTENLILSTSTTLITTNDPVKIAEDYATLQHLADGRVDLMMGRGNTGPVYPWFGQDIRQGIPLAIENYALLHRLWREDVVDWEGKFRSALQGFTSTPRPLDGVPPFVWHGSIRSPEIAEQAAYYGDGFFANHIFWPKQHTEKMVRLYRQRYAHYGHGTPEQAIVGLGGQVFMRKNSQDAVREFRPYFDNAPVYGHGPSLEEFSRETPLTVGSPQEVIERTLSFREYAGDYQRQLFLVDHAGLPLKTVLEQLDILGEEVVPVLRKEFAALRPAGVPETAPLHPAVRTQEA
>NZ_CP040244.1|WP_137988347.1|162286_162475_+|hypothetical-protein
MTDTGTDPVPAPDPVPAPDPALDNERWKERGVMLRVFVYVFATHAFAGFVWLLFYVGQNAQK

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Crispr_ID: NZ_CP040244_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_2

297498-297603

Orphan

Consensus_repeat	Method
TCCGGGGACCGGTCCGTCGCCGCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040244_2

>merge|NZ_CP040244|2|297498-297603|CRISPRCasFinder
TCCGGGGACCGGTCCGTCGCCGCCGGTGGGGACATCGGGAGCGTGTCGACGGGCGACGCGTGAGCGGCGGCGTCGAAGCCTCCGGGGACCGGTCCGTCGCGGCCGG

>NZ_CP040244|2|1|297498-297603|CRISPRCasFinder
TCCGGGGACCGGTCCGTCGCCGCCGG	TGGGGACATCGGGAGCGTGTCGACGGGCGACGCGTGAGCGGCGGCGTCGAAGCC
TCCGGGGACCGGTCCGTCGCGGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137988464.1\|291259_292621_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235687
NZ_CP040244.1\|WP_137988461.1\|288875_289259_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988468.1\|295797_296397_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP040244.1\|WP_137988465.1\|292752_293448_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP040244.1\|WP_137988479.1\|310348_310741_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP040244.1\|WP_137988474.1\|304560_305301_-\|SURF1-family-protein	unknown	unknown	gnl\|CDD\|376731
NZ_CP040244.1\|WP_137988462.1\|289945_290401_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP040244.1\|WP_137988466.1\|293560_294211_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988471.1\|299751_301023_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP040244.1\|WP_137988477.1\|308336_309497_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040244.1\|WP_137988476.1\|307602_307824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988475.1\|305323_307147_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP040244.1\|WP_137988463.1\|290397_290991_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153234
NZ_CP040244.1\|WP_137994591.1\|295380_295716_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP040244.1\|WP_137988467.1\|294372_295131_-\|SLATT-domain-containing-protein	unknown	unknown	gnl\|CDD\|375613
NZ_CP040244.1\|WP_137988469.1\|296441_297104_+\|DUF5063-domain-containing-protein	unknown	unknown	gnl\|CDD\|374737
NZ_CP040244.1\|WP_137988472.1\|301053_302145_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP040244.1\|WP_137988478.1\|309575_310271_-\|ester-cyclase	unknown	unknown	gnl\|CDD\|377824
NZ_CP040244.1\|WP_137994593.1\|303482_304472_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237868
NZ_CP040244.1\|WP_137988473.1\|302457_303180_+\|SigE-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132028

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137988464.1\|291259_292621_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0
NZ_CP040244.1\|WP_137988472.1\|301053_302145_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	1.00715e-138
NZ_CP040244.1\|WP_137988468.1\|295797_296397_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.62413e-126
NZ_CP040244.1\|WP_137988465.1\|292752_293448_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.95148e-25
NZ_CP040244.1\|WP_137988479.1\|310348_310741_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.00026521
NZ_CP040244.1\|WP_137988474.1\|304560_305301_-\|SURF1-family-protein	gnl\|CDD\|376731	pfam02104, SURF1, SURF1 family.	1.42217e-27
NZ_CP040244.1\|WP_137988462.1\|289945_290401_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.4125e-12
NZ_CP040244.1\|WP_137988471.1\|299751_301023_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP040244.1\|WP_137988477.1\|308336_309497_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.65699e-105
NZ_CP040244.1\|WP_137988475.1\|305323_307147_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.02414e-48
NZ_CP040244.1\|WP_137988463.1\|290397_290991_-\|glutamine-amidotransferase	gnl\|CDD\|153234	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	7.07309e-61
NZ_CP040244.1\|WP_137994591.1\|295380_295716_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.27289e-36
NZ_CP040244.1\|WP_137988467.1\|294372_295131_-\|SLATT-domain-containing-protein	gnl\|CDD\|375613	pfam18183, SLATT_2, SMODS and SLOG-associating 2TM effector domain 2. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is the only prokaryotic SLATT family to exist as a standalone domain, with no as-yet discernable genome associations.	2.32059e-121
NZ_CP040244.1\|WP_137988469.1\|296441_297104_+\|DUF5063-domain-containing-protein	gnl\|CDD\|374737	pfam16702, DUF5063, Domain of unknown function (DUF5063).	2.36555e-51
NZ_CP040244.1\|WP_137988478.1\|309575_310271_-\|ester-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	2.71944e-28
NZ_CP040244.1\|WP_137994593.1\|303482_304472_+\|hypothetical-protein	gnl\|CDD\|237868	PRK14960, PRK14960, DNA polymerase III subunit gamma/tau.	1.83699e-05
NZ_CP040244.1\|WP_137988473.1\|302457_303180_+\|SigE-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	9.70477e-54

>NZ_CP040244.1|WP_137988469.1|296441_297104_+|DUF5063-domain-containing-protein
MSDATLHAITQDPDDFAVQIADSIESFIVATTEVAKGDEPDSAVPFLLLEISQLLLAGGRLGAHEDIVPDERYEPDTGPEPDVDDLRERFAVMLDPVDVFSEVFDPYEPRKAPVPARISDNLADIVTDLRHGLAHYRAGRTSEALWWWQFSYFSNWGPTASATLRALQSLVAHVRLDQPLAALDGLDTDEDLAEDDLAEEAGKVMAEEIAGPLGLRTLKK
>NZ_CP040244.1|WP_137988468.1|295797_296397_+|recombination-protein-RecR
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCAVCGNVAQQEQCNICRDPRRDQSVICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIKPMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV
>NZ_CP040244.1|WP_137994591.1|295380_295716_+|YbaB/EbfC-family-nucleoid-associated-protein
MIPGGGQPNMQQLLQQAQKMQQDLARAQEELAATEVEGQAGGGLVRATVTGSGELRGLVIDPKAVDPEDTETLADLVVAAVQAANDNAQQLQQAKLGPLAQGLGGMPGLGF
>NZ_CP040244.1|WP_137988467.1|294372_295131_-|SLATT-domain-containing-protein
MSQQPEMQPPQPPPGQPEQPGRPGRPAASRDLTGTPFPLGDWGEPAERLDELYRWVESNALRTAEWYLSDRVWKRRCARALRVGTALGVIAGAALPLLDLTGVAADGAAGWGYLSLLLGAACMACDRYFGLTSGWIRDVATAQAVQRRLQALQFDWASESVREVLGPTEGTASEAAERCLGVLRRFSEDVTELVRAETADWMVEFRSGPAPLALQSVGVVAARPEGAHPSSRFPLPPGTRPNMPRQRPPEPR
>NZ_CP040244.1|WP_137988466.1|293560_294211_+|hypothetical-protein
MACDLWLVPLVDVLCHSPDNPFAEEIAAYDTVLTASGLPTVPVFAYMPGLSGDVAPVAGFDYDALHFLRRAYLLHLCGLPVEPVDELGGDYEQLLEMFESTAQQSHLVWHYDHAGAYVPVDFPAPLSNDELLEGGGPLGSSHGLLRELEFVAPAIGIDPANPPAAPLPPERPTSLEEPAQPIAYDDSPFARERHVWLGLHAAATRSLGQGSMIILS
>NZ_CP040244.1|WP_137988465.1|292752_293448_+|GntR-family-transcriptional-regulator
MPASGAVTRNTLRRQIADALRDEVLAGRLQPGQEFTVKQIAEQYGVSATPVREALVDLSAQGLLDSDQHRGFRVHEFTIDDYRGMVEARMLVVDGIFRRHDPVAHPLGPDVSRGLALVSVRRRGESAARAARAGDLDVLIGYDIRYWRELAHLVSANDYIADFLHRLRVQAWVFSVPYLRSDRDVLGWLWSGHVDLVDALTLGDAEAAIAVVRAYNTQSLEWADRLERLSR
>NZ_CP040244.1|WP_137988464.1|291259_292621_+|aspartate-aminotransferase-family-protein
MTPHVEPDPQAGAAVKAADRAHVFHSWSAQGLIDPLAVAGAEGSYFWDYDGNRYLDFTSGLVYTNIGYQHPKVVAAIQEQAAKLTTFAPAFAIDVRSEAARLIAERTPGDLDKIFFTNGGAEAVENAVRMARLHTGRHKVLSAFRSYHGATSTAINLTGDPRRWASDTGSAGVVRFWAPFLYRSPFYAENERQECERALAHLEDTIAFEGPATIAAIILETVPGTAGIMTPPPGYLAGVREICDKYGIVFVLDEVMAGFGRTGKWFAAEHFDVVPDLMTFAKGVNSGYVPLGGVAISAEIAATFDKRPYPGGLTYSGHPLACAAAVATIQVMEDEKVVEHAAHIGETVLGPGLRELAERHPSVGEVRGMGTFWALDLVKNKETREPLVPYNAAGEANAPMAAFGAAAKKHGLWPFINMNRTHAVPACNVSEAEAKEGLAALDAALSVADEHTA
>NZ_CP040244.1|WP_137988463.1|290397_290991_-|glutamine-amidotransferase
MPRTVHLAVYDTLADWETGHATAWLARSGFTVKTVGPVADKPVTSIGGLRITPDLALADLRPEDSELLILPGADLWDTSDDLAPFAAAARRFLDAGVPVAAICGATAGLAREGLLDDRPHTSAVSFYLAATGYKGGEHYIDTDAVTDGDLITAGPTEPVAFAREVLGKMGAFEGTKLDAWYRLFHDSDPAAYEELNA
>NZ_CP040244.1|WP_137988462.1|289945_290401_-|MarR-family-transcriptional-regulator
MSREQQEALSRTALGVFRLNGQFLAVSEKLAEPAGLTAAWWQVLGAVLREPLPVSGIARAMGITRQSVQRIADLLVTQGLAAYAPNPAHRRAKLLTPTPEGRAAIQRIDPGHAELAARLTRELGGLEAIEETARVLERLSAALDAIEGEDR
>NZ_CP040244.1|WP_137988461.1|288875_289259_+|hypothetical-protein
MDWIPVSGFQLRKAGVQFDAVRVDGDDGRRLADWMEQLTGGDPGPVVTEANGRRGVYFLVPAGTTAHRPWPRGVTRLNAGPAHVSYVPVPALRGRTWPLAWRFPPTGPGRFVHPLLLRSAVSELLSG
>NZ_CP040244.1|WP_137988471.1|299751_301023_+|aspartate-kinase
MGLVVQKYGGSSVADAEGIKRVAKRIVDAKKNGHQVVVVVSAMGDTTDELIDLAEQVSPIPAGREFDMLLTAGERISMALLAMAIKNLGHEAQSFTGSQAGVITDSVHNKARIIDVTPGRIRTALDEGNIAIVAGFQGVSQDKKDITTLGRGGSDTTAVALAAALDAEVCEIYTDVDGVFTADPRVVKKAKKIDWISFEDMLELAASGSKVLLHRCVEYARRYNIPIHVRSSFSGLRGTWVSNEPQGDRKVEQAIISGVAHDTSEAKITVVGVPDKPGEAAAIFRAVADAEINIDMIVQNVSAASTGLTDISFTLPKAEGRKAMDALDKAKAAIGFDSLRYDDQIGKISLVGAGMKTNPGVTADFFRALSDAGVNIELISTSEIRISVVTREDDVNEAVRAVHTAFGLDSDSDEAVVYGGTGR
>NZ_CP040244.1|WP_137988472.1|301053_302145_+|aspartate-semialdehyde-dehydrogenase
MSCKPTLAVVGATGAVGAVMLQLLSQHADVWGEIRLVASPRSAGRKLAVRGVESEVLALSEDALEGVDLAVFLAPEEVAAQWAPIAAAKGAVVVDTSVAFRMDPDVPLVVPEINPHAVRVRPRGIVASPGCSTLALIVAVGALHAEFGVAELVVTAQQAASGGGQAGVAALREQLSLVAGTELGNHPGDVRRAVGDDTGPFPGPVALNVLPWSGAPREDGWSSEELRLREETRKILGLPGLPVAATCVRVPVVTAHSVSVHARFERPVSVARAHEILATSPGVVLYDDPAAGDFPTPADVVGTDPVWVGRVRRSMDDERALEFFVCGDNLRKGAALNAVQIAESVIRPERPMGADHPDGRERT
>NZ_CP040244.1|WP_137988473.1|302457_303180_+|SigE-family-RNA-polymerase-sigma-factor
MAEVLDIPAVVPLRGTPVIPVRGTIGVPVRGTVARPLRRPRPAGGMPVIAPVPTRSRAVGVTGIPSPRESTEGVVTSGTSVDHLTETYRAHYRSLLGLAALLLDDTASCEDVVQEAFIRVHSARKRVRDPEKTLAYLRQTVVNLSRSALRRRILGLKLLSKPMPDMASAEEGAYDQLERDALIKAMRGLQRRQREVLVLRYFADMTEAQVAETLGISLGSVKAYGSRGIAALRVAMEATA
>NZ_CP040244.1|WP_137994593.1|303482_304472_+|hypothetical-protein
MADLQPADGTLEHLRRAVPARRTRKRQAVVGFAAAAVLIGTAVPAFVHVATSGGITADQAVNAGHGEQAQGGTGSETGVEGGGKGDGTPSGTAPSQGATGGGDADASANGGAGTGSKPAGGSSPACEAGQLAVSSVRAGGPDAEGKVYGTFRIANVSGKECLVSGDGSVGFQALGAADPSRISVVAHTAGDAASGLPDPSQESPRLVLQPDNAYEVRFAWVPAATCPTTGTSPNPDPTPNPDPTPSPNPDPSPSPTKDGEGTSTGTTGSTGNGGDTTDGTVPQLVMDGTPADGSVAVSHTAEAGAPQATTTIPNACAGTIYRTGVLDAS
>NZ_CP040244.1|WP_137988474.1|304560_305301_-|SURF1-family-protein
MYRFLKTPRWWGINVFVLLAIPFCLFMGTWQMGKFEDRVDSHREAERAPDPGTLRTEPLDELLPVDKETSGRHAQASGRYGEQFLVPDRELDGRRGSYVLTMLKTDGGKSLPVVRGWLPAGAKAPAPPAGEVTVVGALQASENAGTKGVHAAGGLPEGQLGMISAGSLVNVVPDEVYDAWVTVTDSPAGLTPVPATAAAGTSLDLKAFQNLGYTAEWFVFAGFVLFMWFRLLRREVEAQRDEALGL
>NZ_CP040244.1|WP_137988475.1|305323_307147_-|S9-family-peptidase
MGAMTDDNKITDIPAWEQRFRAARVSLPEWAEEAPDRSLFVSNATGTYELYAWDRASGGQRQVTDRPNGTTDGTLSPDGRWIWWFSDKDGDEFGVWMRQPFDGGADEPAVPGLAPSYPAGLAIGRDGTLVVGCSTDEEGSTIHLVRDGAAPVEIYRHRESAGVGDLSHDSTLIAIEHTEHGDAMHSALRVLRAADASVVAELDDSKGGTEELGLAVLGFAPVDGDTRLLVGHQRRGRWEPLLWDVATGEETDLRLELPGDVSAEWYADGTGLLIVHSFEARSELWRYDIATGALVRVETPAGSVSDATARPDGSVEYLWSSAAQPPVVRSTAGGVVLDPPGLRAPGSVPVEDVWVEGPGGRIHALVQRPAEGEGPFPTIFEVHGGPAWHDSDAFASGPAAWLDHGYAVVRVNYRGSTGYGREWTDALKHRVGLIELEDVAAVREWAVASGLADPAKLVLSGGSWGGYLTLLGLGTQPDAWSVGLAAVPVADYVTAYEDEMEALKALDRTLFGGSPEEVPDRFEVSSPLTYVDKVTAPVYISAGVNDPRCPIRQIDNYVDRLAARGAVHEVYRYDAGHGSLVVEERIKQVRLELAFAARHLGTRPVGG
>NZ_CP040244.1|WP_137988476.1|307602_307824_-|hypothetical-protein
MHPLQTAAVEAATAVPAEVVADSGPSALALGLGAAALAGAIGTAVVRSRLSKTVDGSPTQARRAGSASDRPRG
>NZ_CP040244.1|WP_137988477.1|308336_309497_-|serine/threonine-protein-kinase
MPDGGVRRRVLLLGLTDRRKAGSQVLVADRYRLHICVGRGGMGEVWQATDEVLGRAVAVKLMLGHGTDPSAAERFRLEAQTAARLSHPHVVGVFDFGTWDGKLFLVMELVDGASLAGDPGSPPVLPPDQVAVVAAHAAAGLAAAHREGVVHRDIKPGNLLRDADGTVKLADFGIARFVDDPSAGLTTTGQIVGTGLYLAPERALGRPASPASDVYSLGCVLYQLLTGRPPFQGDTATSLLYQHIDTPPAPPRQLGVGLPAAFEAYLLMLLAKEPEQRPPAQAIADWFASGAWRGHPQPKPQPQAQPQPQPHARPHRQPRPQAAQPRPQSRPSRAPQSPPPPPPRRQARRSESGLAALSRRRPRKTAAVAGGIAFVVFLLIGMAWLS
>NZ_CP040244.1|WP_137988478.1|309575_310271_-|ester-cyclase
MTFVQVIDCKTSRADELNHLMDAWVEATQGKRTATHSIVGRDRADSTHVVEIVEFPSYEEAMKNSHLPETDRIFREMVALCDGEPSFTDLDVMRDEQLNKIVVRSFFEDVVNARNIDAVDAMCTDDYREHDPSLSSYDMGLAQAKIENREILEAFEPMATIEGMVAEGDMVCARLSFKGRHVGAYQGMEATGREVSGTGHATFRCKGGKLAESWWNFDDLGLMQQLGAIEA
>NZ_CP040244.1|WP_137988479.1|310348_310741_-|nuclear-transport-factor-2-family-protein
MKPLEAKPPERFVTDFFTTFTEAVVRGEEDPAELMARYYTRDVVQIADGVRLDWDRLVAHLRPVRRNLIAFRFEVHEALAAGHRIAARFTIHARMRKGGPVTTRVHMFAEFTPDGLLRRAEQLTRAVGAP

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Crispr_ID: NZ_CP040244_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_3

873509-873715

Unclear

Consensus_repeat	Method
AAGAAGGCCGTCAAGAAGGTC	CRT

3 spacers

cas3

The CRISPR arrays of NZ_CP040244_3

>merge|NZ_CP040244|3|873509-873715|CRT
AAGAAGGCCGTCAAGAAGGTCACCAAGAAGGTCAAGAAGACCGTCAAGTCGGCCTGGAAGAAGACGAAGAAGGCGGTCAAGAAGGTCGCCAAGGTCGTCAAGCGGGCGGCGAAGAAGGTCAAGAGGGCCGTCAAGAAGGCGGTGAGGAAGGCTGCCAGGCACGTCCGCAAGGCCGTGCGGTATGTCTCCGACAGCGTCAAGAAGGTC

>NZ_CP040244|3|1|873509-873715|CRT
AAGAAGGCCGTCAAGAAGGTC	ACCAAGAAGGTCAAGAAGACCGTCAAGTCGGCCTGGAAGAAGACG
AAGAAGGCGGTCAAGAAGGTC	GCCAAGGTCGTCAAGCGGGCGGCGAAGAAGGTC
AAGAGGGCCGTCAAGAAGGCG	GTGAGGAAGGCTGCCAGGCACGTCCGCAAGGCCGTGCGGTATGTC
TCCGACAGCGTCAAGAAGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137988914.1\|852019_854593_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NZ_CP040244.1\|WP_137988915.1\|854819_858359_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP040244.1\|WP_137988927.1\|879502_881011_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040244.1\|WP_137988920.1\|861810_862491_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP040244.1\|WP_137994646.1\|863775_864381_+\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380577
NZ_CP040244.1\|WP_137988931.1\|884230_884611_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350262
NZ_CP040244.1\|WP_137988913.1\|851234_852023_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP040244.1\|WP_137988916.1\|858514_859819_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238868
NZ_CP040244.1\|WP_137988921.1\|862533_863280_+\|N-acetyltransferase	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988925.1\|876787_878851_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NZ_CP040244.1\|WP_137988928.1\|882408_882792_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988929.1\|883119_883941_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|182059
NZ_CP040244.1\|WP_137988930.1\|883985_884234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137988917.1\|859866_860454_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040244.1\|WP_137988926.1\|878957_879506_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|171499
NZ_CP040244.1\|WP_137988924.1\|875962_876658_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273380
NZ_CP040244.1\|WP_137988923.1\|875343_875835_+\|DUF4265-domain-containing-protein	unknown	unknown	gnl\|CDD\|379459
NZ_CP040244.1\|WP_137994647.1\|881084_882281_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224419
NZ_CP040244.1\|WP_137988919.1\|861497_861689_-\|antitoxin	unknown	unknown	gnl\|CDD\|379416
NZ_CP040244.1\|WP_137988918.1\|860559_861423_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137988914.1\|852019_854593_+\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.0534e-28
NZ_CP040244.1\|WP_137988915.1\|854819_858359_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP040244.1\|WP_137988927.1\|879502_881011_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	9.98522e-102
NZ_CP040244.1\|WP_137988925.1\|876787_878851_+\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	2.06031e-37
NZ_CP040244.1\|WP_137994646.1\|863775_864381_+\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380577	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.	8.14813e-07
NZ_CP040244.1\|WP_137988931.1\|884230_884611_+\|hypothetical-protein	gnl\|CDD\|350262	cd18695, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_13.	2.98863e-46
NZ_CP040244.1\|WP_137988913.1\|851234_852023_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	8.04947e-110
NZ_CP040244.1\|WP_137988916.1\|858514_859819_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238868	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.064e-88
NZ_CP040244.1\|WP_137988920.1\|861810_862491_+\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	2.39004e-32
NZ_CP040244.1\|WP_137988929.1\|883119_883941_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	5.07277e-11
NZ_CP040244.1\|WP_137988917.1\|859866_860454_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.32998e-10
NZ_CP040244.1\|WP_137988926.1\|878957_879506_+\|hypothetical-protein	gnl\|CDD\|171499	PRK12438, PRK12438, hypothetical protein; Provisional.	0.000182821
NZ_CP040244.1\|WP_137988924.1\|875962_876658_-\|hypothetical-protein	gnl\|CDD\|273380	TIGR00990, Mitochondrial_import_receptor_subunit_TOM70, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70). [Transport and binding proteins, Amino acids, peptides and amines].	0.00789539
NZ_CP040244.1\|WP_137988923.1\|875343_875835_+\|DUF4265-domain-containing-protein	gnl\|CDD\|379459	pfam14085, DUF4265, Domain of unknown function (DUF4265). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 139 and 168 amino acids in length.	1.88612e-14
NZ_CP040244.1\|WP_137994647.1\|881084_882281_+\|hypothetical-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	1.93215e-11
NZ_CP040244.1\|WP_137988919.1\|861497_861689_-\|antitoxin	gnl\|CDD\|379416	pfam14013, MT0933_antitox, MT0933-like antitoxin protein. This family of proteins contains the MT0933 protein, which has been identified as an antitoxin to /protein MT0934. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 90 amino acids in length.	1.4066e-12

>NZ_CP040244.1|WP_137994646.1|863775_864381_+|BMP-family-ABC-transporter-substrate-binding-protein
MKTRRTWRNSAKSSDSPTPSAVARVLAGIAGALRGRAGWTTASAAVVILGLLGVWLFVGGGQDGPPDPRARQYKDFDACLLTDEKGIVTGAPAAPVWEGMQEASGDTQVRVTFVPVMGEQTLANVQPFFNGLMQRQCDVVLASGAPQVKAVEEGAGKHPKVRFVVVDGSKKAGNVTLVTSGKTLKSAVADAVRQAVKDSGL
>NZ_CP040244.1|WP_137988921.1|862533_863280_+|N-acetyltransferase
MELKITTLAERPGLQAQMWAMKDLWPEFILNDPIGWSHFPRIVAELPEYVLVATDAEDNVVARAFSVPFRLHAEGRGELPATGWDQVLLWAFSDRRLGREPDTVSAIEVCVATDALGQGLSGKMLGAMRDNARRLGFSEVVAPVRPNAKHLEPATSIHEYAFRTRESDGLPHDPWLRVHVRAGATVEKVAPASMTVSASVEQWRAWTGLPFDTDGPVEVEGALVPVHCEASRGFAVYVEPNVWVRHPL
>NZ_CP040244.1|WP_137988920.1|861810_862491_+|HNH-endonuclease
MPSYRRTLPLAALAAAVLITSGCTAPPDGSTAEGAPGAGRGGSALAAVDTLTVKGRAPKTGYDREKFGRAWADVDGNGCGTRDDILKRDLAEVRFKDRDCKVASGVLADDPYTGDRIDFVRGRSKVDIDHLVALSDAWQKGAQQWDAEKRRRFANDPLNLLAVDSTANRRKSDGDAATWLPPNKAYRCTYVAAQVAVKKKYGVWVTRGERDAMKKVLGGCPDQRLP
>NZ_CP040244.1|WP_137988919.1|861497_861689_-|antitoxin
MGIMDKLKGMVRGHEDQARQASDAAERTINEKTGNKYTGQVDQAQQKIEGTLGMPDRPEQPPS
>NZ_CP040244.1|WP_137988918.1|860559_861423_+|hypothetical-protein
MEPGRVRQMWHLLEPLHAVLYYAPEAFDEALALGYDVKERWPGYFAWRAAPLGPAGAERIGSAFYSFSPQMVARYVPEVWRTAAPADVLDARLRAVDLAYRSLLGAETVDGPELAEAAALARRAAEAAVTAGRPLAAANAELPWPDAPHLVLWQAATILREHRGDGHLAALLAAGLDPAESLVSFAGVGAASEQTFTSRGWSEAEWAAARERLAARGLLAADGAATEAGRALRAEVELRTDVLAAGPWAALGPEATARLAELLGGPWLTVIGSGLLPGENTLGIGKI
>NZ_CP040244.1|WP_137988917.1|859866_860454_-|TetR/AcrR-family-transcriptional-regulator
MSSRRTYHHGDLRQAVLTAALDVIATEGPSALSLRDLARRAGVSHAAPAHHFKDRAGLLTAVATEGFDLLAQALGEAKDLKDAGVRYVRFATEHPAHFQVMFQPDLHRPDDPELLAAKERAGDRLRAGVAGVSADGRGPDPRLAGVAAWSLAHGFATLLLSHNLAGPVGDRDPEEVFRTLAGLLFAAGGPQAPGE
>NZ_CP040244.1|WP_137988916.1|858514_859819_-|SGNH/GDSL-hydrolase-family-protein
MTPLAPVTSTTPIRRTRRTRHTAVALLGAAALTALPLADGAMASEQHGGGAWRGAWATSVQHPTAPFGPNWSQQGFSNHTVRQVVRVTTGGTKARIELSNRYGTGPLVITGATVARTDKGASVKPGSVRQLSFGKGGRSVTIPAGGTAYSDGVPIRVEALESLTVTLYLAAPTGPATFHTFSAATSYRADGDHRSDQDGTAFKESSHSWYFLSGVEVSGGAPARRDGVVAFGDSITDGVGSGLGADNRYPDELAERFAAAGRPRSVLNHGIGGNQVTNDTTWAGEKGVERFKKDVLTEPGVRTVIVLEGINDIGGSGPSFPGGPTPEVSVEQLIEGHRSLIRQAHAKGLKIVGATLTPIKGSFYDTPANEAKRDAVNEWIRDSGAYDAVVDFDRAVSDPTDRDALLPAYDSGDRLHPNDAGFRAMAEALDLDAL
>NZ_CP040244.1|WP_137988915.1|854819_858359_+|transcription-repair-coupling-factor
MSLHGLLDVVVKDAALAEAVKAAADGNRMHVDLVGPPAARPFAIAGLAREAGRPVLAVTATGREAEDLAAALRSLLDPDTVVDYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDPSAGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQTADLNEIVEGLAAAAYSRVELVEKRGEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTEDVKQRAAALAELHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMTMVCDPERVRTRAADLVATSHEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRARELGMMWWSVSPFAADESADDSDADTMKLGMHAPETYRGDTARALADTKGWLADGWRTVYVTEAHGPAARTVEVLGGEGIAARLDADLAEISPSVVHVATGSIDYGFVDPALKLAVLTETDLSGQKAAGKDGRRMPAKRRKTIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSARMAAPGHAFGPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVTRALSRFQTESESKATMEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRADVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMGESALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIKAVREELTDRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLYPRTVVKPAVHQILVPRPTSGKIGGKPVVGRELLAWTGEFLTTILGS
>NZ_CP040244.1|WP_137988914.1|852019_854593_+|FtsX-like-permease-family-protein
MTVLKTSLRNFFAHKGRMALSAVAVLLSVAFVSGTLVFTDTMNTTFDKLFASTASDVTLSPKDAAVDDETPQSGRPETLPASLVDQVRKAEGVKDAQGSVISLSVTVVDSGDKNVGPTSGAPTIAVNWGPNELRSVDITSGHEPRGPTEMMVDAGTAEKHKLKIGDELRTIAVTGDFTARISGIVEFKVTNPGATVVYFDLATAQRELLGKEGLFTQITADAAPGVSDETLKSNIAATVGGGYTLQTAAEVADAGREDVAGFLDVMKYAMLGFAGIAFLVGIFLIVNTFSMLVAQRTREIGLMRAIGSSRKQVNRSVLVEALLLGVVGSIAGVAAGVGLAIGLMELMGSMGMELSTEDLTVKWTTPAVGLLLGIVVTVLAAYIPARRAGKVSPMAALRDAGTPADGKAGLVRAGLGLALTAGGAAALWTATQAEKAGTGSLWLGLGVVLSLIGFIVVGPLLAGGVVRVLGAVVLRIFGPVGRMAERNALRNPRRTGATGAALMIGLALVACLSVVGSSMVASATEELDRSVGADFIVRSTNGQPVMPQAQAALEKTPGLDHVTEYKWVEAKITDPRGKTVDKGVVAADPTYAKDLRRDTTAGTLLDAYGTNAMSVGSDYASEHGVKVGDELTVAFKGGESAKLRIAAITSDENNVDKGVMYTNITTAERYLPAEKMPKSVIMFATAEDGKEAEAYAALKSSLAAYPQYKVSNQADYKQDLKDQVGQLLNIVYGLLALAIIVAVLGVVNTLALSVVERTREIGLMRAIGLSRRQLRRMIRLESVVIALFGALLGLALGMGWGTAAQKLLALEGLGVLEIPWPTILTVFVGSAFVGLFAALIPAFRAGRMNVLNAIATE
>NZ_CP040244.1|WP_137988913.1|851234_852023_+|ABC-transporter-ATP-binding-protein
MTSAVTIPRHGGTGGLTAVAARARQVVKAYGVGETRVVALDHVDVDIARGQFTAIMGPSGSGKSTLMHCLAGLDTVTSGQIFLDETEITGLKDKKLTQLRRDRIGFIFQAFNLLPTLNALENITLPMDIAGRRADAAWLDRVVSTVGLAERLGHRPNQLSGGQQQRVAVARALAARPEIIFGDEPTGNLDSRAGAEVLGFLRQSVDELGQTIVMVTHDPVAASYADRVLYLADGRIVDEMFRPTADAVLDRMKDFDARGRTS
>NZ_CP040244.1|WP_137988923.1|875343_875835_+|DUF4265-domain-containing-protein
MPKNYIVHDDPAIITDRQRIAMADLAPFGFPDQWEQIWLGHRDDGLFVMQCIPFRIYGISLFDIVRLDDDDMLVEVVSRSGHRTMRALFVPGLDPAYLSSLTEGINSLAQQEGFVLEWSGDRHVAINIPADRDAGAMEAFMKERRAAESLFWEWSDIKPFLVG
>NZ_CP040244.1|WP_137988924.1|875962_876658_-|hypothetical-protein
MSQQQRNWFARHKTLTTTGALVALVVIGATGCEGGGDTTSPKSTSKQEQPATGGDKGDKAPETKKAATIDGDGDFEVGKDVKPGLYRSTGNKDAGCYWERAKDSSGDTDSILANDNVTGTSYVQIAATDKIFKSEGCGEWEAVDAKATGTPKAAPKGDGGMFKVGLDIAPGTYKSTGNTDDGCYWERSKDASHSTDSILANNNVSGTAIVKISKTDGYFKTSGCGDWAKTG
>NZ_CP040244.1|WP_137988925.1|876787_878851_+|N-6-DNA-methylase
MLGLRSRTRGDGQVPDEHAAEVTAAGIARLAGVGRAAVSNWRRRHEDFPKPVGGTETSPSFALADIEQWLRDQGKLVEVPLRERVWQQLAAHPAGSVTALVHAGCALLLVRDRPTGWAEIAALSDERLSDVLPTALEELLTARFGFARAVRTPLPADLAPSVPLMRGAAELAAALGARQAFEFLLGRHLDANPRQYTLTPPGLAELMAAMAAEAAGPTPTVLDPACGTGGLLRAVQRPTALHAQDADPELAALTALRLALHGDADIRSAAGDTLRADAFPTLTADAVLCHPPFNERSWGHDELAYDPRWEYGFPARTESELAWVQHALARLRDGGTAVLLMPPAVASRRSGRRIRADLLRRGALRAVIALPAGAAPPYGIPLHLWVLHRPGPGHRPAPELLLVDTTGLVQDGGRDKLPWPTVQGAVLDAWNGRAEPGVSRSVPVIELLDDDVDLAPARHLAAPAAGGTAAELEAVRARLDETLRRTLSLAPTPAAPGRPAARTLTTVGELARAGALQLRAGGAGASPAGGPVLTEQDVLYGTAPSGTLPDGPAEDPVLVEQGDVVVPVIGGGSIARVVDAATAGAALGRNLQLLRPDPAALDPWFLAGFLRGTANNRQASSFASTATRLDVRRLQLPRLPLADQRRYGERFRALGEFEDALRLAGRLGDQLVQGLYDGLADGTVRPE
>NZ_CP040244.1|WP_137988926.1|878957_879506_+|hypothetical-protein
MHGHAPMAPPRPGPSAGVIVVRVILCLVVVLSLGSLAWIAMLRIAIMRRRGRDWALFWGQLVLNIACLATLEQRLADHWISNVGMAGLLVQMAAVTAYYLVADIRHHQPPAVLPWAPPPPQMSPQMPPQMPPYGYGYPPPQPPPPTTLPPTTPPPGPRIDQVRAELDELSHLLRKDPREGGR
>NZ_CP040244.1|WP_137988927.1|879502_881011_+|serine/threonine-protein-kinase
MNGRVIGGRYELSTVIGQGGMGQVWTAYDGRLDRRVAVKLLRPATLSGPATAAEELRRRFVRECRVTAQVDHPGLVTVHDAGSEGDDLYLVMQYVDGADLADHLAEHDPYPWPWAVSVAAQLCAVLAAVHAVPIVHRDLKPRNVMVRPDGTLTVLDLGVASVLDTDTTRLTQTGSPIGSPAYMAPEQAMGGAVGPYTDLYALGILLHELLSGNVPFAGSTALGVLHRHLYEPPLPVRQLRPEVPEALEALVLRLLAKDPQHRPSGAHEVYEALLPLLPARGAPAGPLDPTRPFLRPHAPWPDRASAPAPPVAPPVARPDVATTVDEVKRLLGEGSLTQAVDLLGSILPAAAAEHGEHSPVVRILRKQYATTLMDDGQYRRALPELRRLAEDRAAEAGAADAQTLQFRYEVALCLEQLGETAAALAEYRALLPFHEHGTDQARFFDIRRRIGNLLLAMGDHTAAHQQLQALLYDTERAYGPYHALPTELRRALTRQQQMGRLP
>NZ_CP040244.1|WP_137994647.1|881084_882281_+|hypothetical-protein
MASPAAGAESVPAVTTGPVFNDPSGDTAAEGRILGHLGRLVNGAEPGSSIRISLYLYGSEWLTDQLLAAHQRGVTVQMVLDHDSTGWGAGKRLQAGLTGESWVRFCKEQEACLAKDPGTTAADPNGWYDNVNHNKTFLFSRTKGNGVVPVDNVVVQSSGNLVEWDRVSGWNDAMTVAGNKELFDAYTGYFNDQAAAAAGQTPQVADYAHDTQAGPAKVYFFPRSTTDVVVNVLRTVAQPVGTAAPCHGNDAGFGTSDGRTKIRIAQGHITRPEVAEELWKLADAGCHVDIVYRKLDNPPNTAVAGWLTKPTAKGRIALRQLYNDERGGTGTHTKYLLIEGTYLGGKNKKIVFTGSHTYTVTALKYNDETMLKYEDAAVFDAYVQNFEAQRAAAENEGL
>NZ_CP040244.1|WP_137988928.1|882408_882792_+|hypothetical-protein
MTTPPATPDQPLAPAEPEKKKGGIGKKILGVVVAIAVALAVKLGLPHLTGEAPVHAEAGDCVTVTGPENDPEVESKGCTEKVADLYKVVKVYDNTFDVEKCGEDSEVALAQQLNSDKFVLCLNAVKN
>NZ_CP040244.1|WP_137988929.1|883119_883941_+|helix-turn-helix-domain-containing-protein
MDTQHFSAPAPRGGVIHVKVKHTSHFTVIGNHLAQHEKLSLLAIGLAVHIQSLPNGSSISIRTLAERFPEGEIRIAAALRELELYGYLARTCERLPGGRLATRTVSYNRPGVTEPDPEPDPDPDPDPDPDPEPEPEPPPTPKPAPAPPAPPVRLPEGPAVDLLLGLRAHDPRLLLSVRDIQHLAPGVTAWLDRGAHPDAVRRTLTAGLPADLKHPAGLLSHRLTTLLPPPVPAKPVIPPPHPFQTCEDCDLAFRAPEPGRCRECLSSPKGRAA
>NZ_CP040244.1|WP_137988930.1|883985_884234_+|hypothetical-protein
MGKATSIKTSEEVRDRLRILAAERGTTITELLEELANRELTAAEREQRASEAAQELGIEYTEQVQRAGEDAWARIRAHQGAA
>NZ_CP040244.1|WP_137988931.1|884230_884611_+|hypothetical-protein
MNLAVVLDHTALTALYRADPFFTGLYIEASRGTGRVMVPSLAVLGAERLLSGAGAHAASLRFAQHVPFAETHAVEAMAWPSTDWPVAHAAAIAWQAARTGAPVTLLSIEPGLYAATGVTPLNPFEL

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Crispr_ID: NZ_CP040244_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_4

1025858-1025978

Orphan

Consensus_repeat	Method
CGCGATGCGGGAGAAGATCCTCGAGATCAGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040244_4

>merge|NZ_CP040244|4|1025858-1025978|CRISPRCasFinder
CGCGATGCGGGAGAAGATCCTCGAGATCAGGTGAGGGACCAGCGCTGGAGCGCCCCCTGCTGGGGGTCCTACGCCCCGGGAGATGCAGCGCGATGCGGGAGAAGATCCTCGAGATCAGGTG

>NZ_CP040244|4|2|1025858-1025978|CRISPRCasFinder
CGCGATGCGGGAGAAGATCCTCGAGATCAGGTG	AGGGACCAGCGCTGGAGCGCCCCCTGCTGGGGGTCCTACGCCCCGGGAGATGCAG
CGCGATGCGGGAGAAGATCCTCGAGATCAGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137989037.1\|1032281_1032986_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP040244.1\|WP_137989040.1\|1040819_1041590_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP040244.1\|WP_137989030.1\|1024195_1024927_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
NZ_CP040244.1\|WP_137989041.1\|1041582_1042521_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP040244.1\|WP_137989028.1\|1016745_1017966_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370818
NZ_CP040244.1\|WP_137989033.1\|1027198_1027792_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP040244.1\|WP_137989034.1\|1028029_1030840_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP040244.1\|WP_137989024.1\|1012540_1013851_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP040244.1\|WP_137989036.1\|1031738_1032245_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989039.1\|1034321_1039313_+\|NAD-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
NZ_CP040244.1\|WP_137994663.1\|1039380_1040511_-\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|378217
NZ_CP040244.1\|WP_137989029.1\|1019138_1021148_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040244.1\|WP_137989025.1\|1013863_1014847_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP040244.1\|WP_137989038.1\|1033358_1033913_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153243
NZ_CP040244.1\|WP_137994662.1\|1023136_1023952_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP040244.1\|WP_137994661.1\|1021305_1023075_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237447
NZ_CP040244.1\|WP_137989026.1\|1014843_1016055_-\|DUF4350-domain-containing-protein	unknown	unknown	gnl\|CDD\|379527
NZ_CP040244.1\|WP_010356958.1\|1018459_1019137_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040244.1\|WP_137989027.1\|1016051_1016741_-\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|379261
NZ_CP040244.1\|WP_137989035.1\|1030895_1031243_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137989037.1\|1032281_1032986_+\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	6.4876e-28
NZ_CP040244.1\|WP_137989040.1\|1040819_1041590_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.00909e-91
NZ_CP040244.1\|WP_137989030.1\|1024195_1024927_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	2.56302e-26
NZ_CP040244.1\|WP_137989028.1\|1016745_1017966_-\|hypothetical-protein	gnl\|CDD\|370818	pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl diester phosphodiesterase. Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase.	7.70115e-05
NZ_CP040244.1\|WP_137989033.1\|1027198_1027792_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.75452e-35
NZ_CP040244.1\|WP_137989034.1\|1028029_1030840_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP040244.1\|WP_137989024.1\|1012540_1013851_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.87784e-52
NZ_CP040244.1\|WP_137989041.1\|1041582_1042521_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	5.28982e-37
NZ_CP040244.1\|WP_137989039.1\|1034321_1039313_+\|NAD-glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
NZ_CP040244.1\|WP_137994663.1\|1039380_1040511_-\|DUF2029-domain-containing-protein	gnl\|CDD\|378217	pfam09594, GT87, Glycosyltransferase family 87. The enzymes in this family are glycosyltransferases. PimE is involved in phosphatidylinositol mannoside (PIM) synthesis, a major class of glycolipids in all mycobacteria. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of PIM. The family also includes alpha(1-->3) arabinofuranosyltransferase, invloved in the synthesis of of mycobacterial arabinogalactan.	2.03265e-05
NZ_CP040244.1\|WP_137989029.1\|1019138_1021148_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.80058e-55
NZ_CP040244.1\|WP_137989025.1\|1013863_1014847_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.84202e-103
NZ_CP040244.1\|WP_137989038.1\|1033358_1033913_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153243	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	3.34844e-92
NZ_CP040244.1\|WP_137994662.1\|1023136_1023952_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	4.25049e-28
NZ_CP040244.1\|WP_137994661.1\|1021305_1023075_+\|hypothetical-protein	gnl\|CDD\|237447	PRK13613, PRK13613, lipoprotein LpqB; Provisional.	0
NZ_CP040244.1\|WP_137989026.1\|1014843_1016055_-\|DUF4350-domain-containing-protein	gnl\|CDD\|379527	pfam14258, DUF4350, Domain of unknown function (DUF4350). This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length.	2.02749e-09
NZ_CP040244.1\|WP_010356958.1\|1018459_1019137_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.5036e-88
NZ_CP040244.1\|WP_137989027.1\|1016051_1016741_-\|DUF4129-domain-containing-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	2.54414e-10

>NZ_CP040244.1|WP_137989030.1|1024195_1024927_+|ribosome-associated-translation-inhibitor-RaiA
MLSGRGAVLSDPGTEFCVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVSKEHNPRQADRSDRVEITVHSRGPVIRAEAAAGDPYAALDLAHGKLEARLRKQHDKRYTRRGNGRLSAAEVADVVPGVAQLNGSGELVGAETGGVPTTMMGSIEVQGEGPLVVREKTHKAAPMTLDQALYEMELVGHDFYLFVDSDTKQPSVVYRRHAYDYGVIHLESDPLAEGGGAGGALGG
>NZ_CP040244.1|WP_137994662.1|1023136_1023952_+|ComF-family-protein
MRGWWREIAGLVLPVACGGCGRPRTELCPACRADLAGPGPRRVRPLPEPAGLPVVHASAPYAGAVRSVLLAHKERGALSLAGPLGSALAGAVEAAAERSGASGAVPLLLVPVPSSRRSVRARGHDPTRRIALAAAGRLRRQGRAARVIPVLRQRRAVADQSGLGARGRFANLAGALEVLAGGARLMERGQVVLVDDLMTTGASLVEAARALRAVHRPFIPGAAEGTADGAAGGTPESGFVQPAAAVVACSPASFEINRNWRRTCIVAGGER
>NZ_CP040244.1|WP_137994661.1|1021305_1023075_+|hypothetical-protein
MPDSGDVRNVKASNPGDSQVRVYAVQPRENAEPDEIVDGFLEAMTSDDPGFATARKYLTKQAARAWKPEQSITVLTTAPDREQADRLADPESQGRSYPIRGRQIATVDARHAYQPMSPAEYRDFIHVVQQPSADGKGMEWRIDHLPPGLVLSQADFQRNYRSVNKYYFASGEDWVVADPVYIRQRQDPVTRMDPVTQTVKALLEGPTNWLKPAVDSRFPSGTELKEGVTTLATDDQSTLKVPLNAKADRVGGEVCRRMAAQLLFTLGDLTSVRVEKVELQRADGTSLCAVAKAQAEEFAPVHDGGRGENPFFVDEHGTLKTLPVGGTEDTEAQVTPGPFGKGATELRSVAIDRAESRAAGVGKDGRELRVASILSDHELKPALLTSTAARPEDRLSAPSWDGRGDLWVADRNPAKPRLWVIPDGEGEPLEVRAPWLSDGARVESLRVSADGVRIALLLKDQDGRTTLKIGRVERDDRGTQQTVSVVDLQPVVPGMETVTAVSWAGPSRLVVVGKEAGGVQQVRYVQTDGATSATSVLPGLNGVTAVAAPNDDRSPVVADSGNDGIVRLVPGANWQRLVKVEGSAPVYPG
>NZ_CP040244.1|WP_137989029.1|1019138_1021148_+|HAMP-domain-containing-histidine-kinase
MSAGSTAPKPGDPGVRSGRTAGPGRGGSRFGRLLHGGRLLQDGAPGGPVLRLLARWVRRPLLPAVRLWRRNIQLRVVAGTLLMSLGVVLLLGLVVIGQVRNGLLDAKEKAAQSQAAGGFSAAQDKAATTPPVPGGQDGGRAGSSLTWRSTLVEQLASGGQSAFNVVALSLEDSDGPASRGARASGEVDPATSIPGELRHSVAQGAGTFQTYARIHYTNGKHSEPGLVLGKRLNDAEGTQYELYYLFPLTQEEDSLTLVKGTLATAGLFVVVLLGAIAWLVVRQVVTPVRMAAGIAERLSAGRLQERMKVTGEDDIARLGEAFNKMAQSLQLKIQQLEELSRMQRRFVSDVSHELRTPLTTVRMAADVIHEARVDFDPVTARSAELLGDQLDRFESLLADLLEISRFDAGAAALEAEPIDLRQVVRRVIGGAEPLAERKGGRIVVVGDEQPVVAEADARRVERVLRNLVVNAVEHGEGKDVVVKLAAAGGAVAVAVRDYGVGLKPGEATRVFNRFWRADPARARTTGGTGLGLSIAVEDARLHGGWLQAWGEPGGGSQFRLTLPRTADEPLRGSPIPLEPEDSRRNREQAAAGQARENGARQVSLPVQPAGDRPTLPVPPRLPTVPRATADPTALPGSGARVVARTTAEADIGEAMASSNAEGEDGTRGR
>NZ_CP040244.1|WP_010356958.1|1018459_1019137_+|response-regulator-transcription-factor
MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIEVCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEPAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGYRHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYKAGPS
>NZ_CP040244.1|WP_137989028.1|1016745_1017966_-|hypothetical-protein
MNDTPGWTSPGSAPSDGQDGSGVPRPATPGDANGSAPQWSKDQPPAGQWSPPTASVPGQAPAPRPAPGWGGPGPGGWGKPPAAKPGVIPLRPLGMGEILDGAVSTLRTYWRTVLTISVTVAVISQVADILAQRYLVPAPPELNPDATPEEALAQFGDSMQAALVGSIPAILIVLMASLVSAALLTVVISRAVLGRPVSVGAAWQEARPRLLQLLGLTLVLPLMAAAIMFVGLLPGLLIGGDGGAGLAALGGLGAFVVIIWLMVRFSLASPALMLERQGVIPSMKRSAKLVQGSWWRIFGITLLTQLLLFLVAMIIVVPFAFLAIAVDGDGFSGLLSGSTPEFGWSFLIINGIGGVIVSAITYPIAAGVTVLLYVDQRIRREALDLELARAAGIPGYGPAPGDHTGS
>NZ_CP040244.1|WP_137989027.1|1016051_1016741_-|DUF4129-domain-containing-protein
MTFTGGTITTPTAFQRADDIPLDIPRVPAREAAERELSKPMYHENDPSLLERGLDRFWEWVGDLFDAASGATPGGLLGLLVIILVVLALVGGLWWRLGTPQRTPTTADSLFDDGPRTADEHRATAARHASAGRWNQAVQERMRAIVRSLEERTLLDPRPGRTADEAAAEAGRTLPSHADELRAAARSFDDVTYGGRTADESAYRRIEELDVSLERTRPTLDTTSAGTPT
>NZ_CP040244.1|WP_137989026.1|1014843_1016055_-|DUF4350-domain-containing-protein
MSRPRTSATSASLTPRQLWTRARGVLLVLALVLIGGIVLATMRSADHHGHLDPRSADPNGSRAVAELLKAQGITVQVATTLADVTAAAGADSTLLVTTPDLLTVHQQATLHRAMTTSGGRTVLVGAGHASVATLAPGVTAATSTSVTAREPSCSLPAAVRAGSVDIGGERYTTANDGAHSCYLGDGLPTLLTVPASAGGDTVLLGSPDVLYNERLDKQGNASLALQLLGSRPHLVWYLPSLSDASVTEGDPEGESPDSTADGFLSLVPSGWLWGTLQLAVAAVLAAIWRGRRLGPLVTERLPVAIRASEATEGRARLYRKANARDRAAAVLRTATRTRIAPLLGVATQDAHSPETLLPALSARLPETTADPRDLLFGPAPADDATLIRLADQLDALEREVRTS
>NZ_CP040244.1|WP_137989025.1|1013863_1014847_-|MoxR-family-ATPase
MSAPTPETPTSSDSARASLEALRTEIAKAVVGQDPAVTGLVVALLCRGHVLLEGVPGVAKTLLVRALAATLELDTKRVQFTPDLMPSDVTGSLVYDARTAEFSFQPGPVFTNLLLADEINRTPPKTQSSLLEAMEERQVTVDGTPRPLPDPFLVAATQNPVEYEGTYPLPEAQLDRFLLKLTVPLPSREDEINVLTRHANGFNPRDLQAAGVRPVAGPAELEAARAAVAKTSVSPEIAGYVVDICRATRESPSLTLGVSPRGATALLSTARAWAWLTGRDYVTPDDVKALALPTLRHRIQLRPEAEMEGVTADSVINSILAHVPVPR
>NZ_CP040244.1|WP_137989024.1|1012540_1013851_-|DUF58-domain-containing-protein
MALTGRTALLAALGSLPVGILAPSWTGMLAVNAPLSLAILCDYAMAAPVRTLQFTRSGDTTVRLGDGAEVQLTVTNTSRRRLRAQLRDAWPPSSWVPGTEQAASRQKLTVPAGERRRITTALRPTRRGDRHAERVTVRSYGPLGLAARQGSHTVPWTVRVLPPFTSRKHLPSRLARLRELDGRTSVLTRGEGTEFDSLREYVPGDDTRSIDWRATARQTTVAVRTWRPERDRHILIVLDTGRTSAGRVGDVPRLDASMDAALLLTALASRAGDRVDLLAYDRRLRAQVQGRSAGDVLPAVVNALAPLEPELVETDARALAATALARAPRRSLIVLLTSLDAAPIEEGLLPVLPQLTQRHTVLVASVADPHTARMATGRGTIDGVYEAAAATQAQAQRRRTADQLHRHGVTVVDATPENLAPALADAYLALKAAGRL
>NZ_CP040244.1|WP_137989033.1|1027198_1027792_-|GNAT-family-N-acetyltransferase
MEPTTLSTERLTLATFTPGDADEVHAICQDPEIQRWTAVPSPYGPQDAAFFLNRVVPDGWRDDTEYSFAVRLREGGPILAAVALHHPRSGAWEIGFWTAKEHRGRGYMTEAALALARWAFTEIGCTRLEWRAEVGNEGSRAVAQKAGFTMEGVLRAGLPNNGTLRDTWVASLLPSDLGLPSPLPYLPSPELIRTDVD
>NZ_CP040244.1|WP_137989034.1|1028029_1030840_+|preprotein-translocase-subunit-SecA
MSVFNKLMRAGEGKILRKLHRIADQVNSIEEDFVNLSDAELRGLTEEYKQRYADGESLDDLLPEAFATVREAAKRVLGQRHYDVQLMGGAALHLGYVAEMKTGEGKTLVGTLPAYLNALSGKGVHLITVNDYLAERDSEMMGRVHKFLGLTVGCILANMTPAQRREQYACDITYGTNNEFGFDYLRDNMAWSKDELVQRGHNFACVDEVDSILVDEARTPLIISGPADQATKWYGDFAKLVTRLTKGEAGNTLKGIEETGDYEVDEKKRTVGIHESGVAKVEDWLGIDNLYESVNTPLVGYLNNAIKAKELFKKDKDYVVIDGEVMIVDEHTGRILAGRRYNEGMHQAIEAKEGVDIKDENQTLATITLQNFFRLYDKLSGMTGTAMTEAAEFHQIYKLGVVPIPTNKPMVRKDQSDLIYRTEVAKFAAVVDDIAEKHEKGQPILVGTTSVEKSEYLSQQLSKRGIQHEVLNAKQHDREATIVAQAGRKGAVTVATNMAGRGTDIKLGGNPDDLAEAELRQAGLDPVEHVEEWAAALPAALERAEKAVKAEFEEVKELGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDDLMRLFKAQMVERVMAMANVPDDVPIENKMVTRAIASAQSQVETQNFETRKNVLKYDEVLNRQREVIYGERRRVLEGEDLHEQIQHFMDDTIDDYIRQETAEGFAEEWDLDRLWTAFKQLYPVKVTVEELEEAAGDRAGITAEFIAESVKDDIHEQYDAREKSLGSEIMRELERRVVLSVLDRKWREHLYEMDYLQEGIGLRAMAQKDPLVEYQREGFDMFTAMMEGIKEESVGYLFNLEVQVEQQVEEVPVQAAEKTSLDKGAVPAGAGRPEIRAKGLDAPQRPDRLHFTAPKVDGEGSIVEGDFVSEDASAGGDGMTRAERRKAQKSTGGRRRKK
>NZ_CP040244.1|WP_137989035.1|1030895_1031243_-|hypothetical-protein
MLPTHAHFAERLLLVLSGRRPVHWMLGQTVGEAYEQLVQLAPVTPFGGHGTRPVLRSCRVQSGPGAMEAFASIATGQGVRAMAFRLELGADRRWRCAAVELDGLHARVPAQKARA
>NZ_CP040244.1|WP_137989036.1|1031738_1032245_+|hypothetical-protein
MRVYVPLTLPGLAQAHKTGEIGPGPLTAYAVTPALREWYVSDDIEELEYAALSRAASASLRLLAGDPSAARRRIVVAVDVPDKEAIVDPDRGLDAGSVGEVRIAGAVPLAKAAAVHADADDAEADVSAAADALGAADLGDDDAQFTVDGAEDHELLWFGVQEIPGLLA
>NZ_CP040244.1|WP_137989037.1|1032281_1032986_+|HAD-family-hydrolase
MGKHGKHGQHGKRRRRGKHLVWDWNGTLLDDIEAVIGATNAAFAELGLEPITLARYRELYTVPVPKFYERLMGRLPTEAEWSLMDGIFHRHYWQRAEDCGLTAGAAELLAARQESGLTQSLLSLAPHADLIPLVRRHGIEERFVRVDGRVGSSTEGKSAHMVRHLEALAAVQTVQVDRVVVIGDAADDARAAAHVGARAVLYTGGSHSRASLEAAGVPVVDSLAEAVAVAEELG
>NZ_CP040244.1|WP_137989038.1|1033358_1033913_-|DJ-1/PfpI-family-protein
MAKILIVTGDAAESLEVMYPYQRLLEEGYEVHIAAPARKQLRFVVHDFEPGYDTYTEKPGYTWPADLAFSEVDPGDYVAVVIPGGRAPEYLRNDPELRKILKSFFDADKPVAQICHGPLLTAAIGGLEGRRVTAYPALELDMQAAGASFQDTAAVVDGLLVSSRAWPDHPTWMREFLKLLRAKA
>NZ_CP040244.1|WP_137989039.1|1034321_1039313_+|NAD-glutamate-dehydrogenase
MQTKLDEAKAELLARAARVAETGPVGGQLPTGPENGERPDRDTLIDYLQRYYLHTAPEDIADRDPVDVFGAALSHYRLAENRPQGTANVRVHTPTVEENGWTCSHSVVEVVTDDMPFLVDSVTNELSRQGRGIHVVIHPQVLVRRDLTGKLIEVLTTELRGELPHDVLTESWIHVEIDRETDRADLKQITTDLLRVLSDVRETVEDWEKMRDAALRIAENLPDEPTADDLRPTEVEEARELLRWLSADHFTFLGYREYELVNGDALAAVPGTGLGILRSDPQHSGADDHHAHPVSPSFSRLPADARAKAREHKLLVLTKANSRATVHRPSYLDYVGVKKFDAEGNVIGERRFLGLFSSAAYTESVRRVPVVSRKVQEVLDGAGFSPNSHDGRDLLQILETYPRDELFQTPPDELREIVTSVLYLQERRRLRLYLRQEEYGRFYSALVYLPRDRFNTTVRERLTDILKEELGGTSVDFTLMSTESVLTRLHFVVRVAPGTELTHLTDADKERIEARLVEAARSWADGFAEALNAETGEERAAELLRKYGNAFPEGYKADHSPRAAVADLVHLEQLSRSGKEFALSLYEPVGAGPGERRFKIYKSGDQISLSAVLPVLNRLGVEVIDERPYELRCADRTHAWVYDFGLRMPSPTANGQSFSEDARERFQEAFAATWTGEAENDGFNSLVLSAGLNWREAMMLRAYAKYLRQAGSTFSQDYMEDTLRNNVHTTRLLVSLFEARMSPERQRAGSELIDGLLEELDGALDQVASLDEDRILRSFLTVIKATLRTNFFQSASEGSDNRGQTTDGEQPHPYVSMKFDPQAIPDLPAPRPAYEIWVYSPRVEGVHLRFGKVARGGLRWSDRREDFRTEILGLVKAQMVKNTVIVPVGAKGGFVAKQLPDPSLDRDAWLAEGIASYKTFISALLDITDNLVAGEVVPPVDVVRHDEDDTYLVVAADKGTATFSDIANDVAVSYGFWLGDAFASGGSAGYDHKGMGITARGAWESVKRHFRELGHDTQTQDFTVVGVGDMSGDVFGNGMLLSEHIRLVAAFDHRHIFIDPTPDAAVSYAERRRLFELPRSSWADYKTELLSAGGGIHPRTAKSIPVNAQMRAALGIEAGITKMTPAELMQAILHSPVDLLWNGGIGTYVKSSAESHTDVGDKANDSIRVNGEDLRVKVVGEGGNLGLTQLGRIEFARKGGPDGAGGKVNTDAIDNSAGVDTSDHEVNIKILLNGLVSEGDMTVKQRNKILAEMTDEVGALVLRNNYAQNTALANAIAQSPSLLHAHQRFMRRLGRDGALDRSLEFLPNDRQIRELLNNARGLSQPELAVLLAYTKITVADELIGTELPDDPYLRGLLHAYFPTQLREKFPDAIDAHALRREIITTILVNDTVNTGGSTFLHRLREETGASIEEIVRAQTAARAIFRLGAVWDAVEALDNRVPADVQTRMRLHSRRLVERGTRWLLGNRPQPLQLAETIDFFGERVEEVWAELPQLLRGADLEWYQSILDELTGVGVPEELALRVAGFSSAFPTLDIVAIADRTAKAPMAVAEVYYDLADRLRITQLMDRIIELPRADRWQSMARASIREDLFAAHAALTADVLSAGNGSATPEERFKSWEQKNVAILGRARTTLEEIQGSETFDLANLSVAMRTMRQLLRAHS
>NZ_CP040244.1|WP_137994663.1|1039380_1040511_-|DUF2029-domain-containing-protein
MLLLLLRDSLGVGGVGREVYVLYQFWYRQFAHGTFPVNDVTWQYPPGAGLVIMSPGVLPWLTYFQAFVALTLLADAAVTLALARADSDRVTHGAWVWVCGLPLLLHIPLARYDVQVTALAVLALLALTTRSAAGHRLGGVLAGLGALVKVWPVLTLIGTPRGRTTRDAWISAAATAAALLATLALCFSHSLGFLRQQGGRGVQIESLGGTALALARATGSWPGRVQYRYGAFEYVGPYVSSVGRVALLLTVLAFVWLLLWRVRARTWNEATPLDAALAAVLLFTVTSRVISPQYMIWLLGLAAVCLTSRRTVMRPVALLLLPTAGLSSLAYPVLYDEVVAGSWPGVAVMVVRNGLLLAAALLAARRLWTSAVAVPA
>NZ_CP040244.1|WP_137989040.1|1040819_1041590_-|ABC-transporter-ATP-binding-protein
MAEQTPTVVADGVHITYTVNGPRTGKGSATAALSRIFSRRATTPGARKVHAVKGVSFAAYRGEAIGLIGSNGSGKSTLLKAVAGLLPVNEGRIYTRGQPSLLGVNAALMNDLTGERNVILGGLAMGMTRAEVDARYDDIVDFSGINEKGDFISLPMRTYSSGMGARLRFSIAAAKSHDVLLIDEALSTGDARFRRRSQERIDELRAEAGTVFLVSHSNSTITETCDRALWLEAGTLRMDGPAKEVVAAYEAFTKKG
>NZ_CP040244.1|WP_137989041.1|1041582_1042521_-|ABC-transporter-permease
MPCTLAESDLVTTETLTKPDSGPQEDLRALALRHGLSVSGARPSLPAYVGQLWSRRGFIAAFATARLTAQYSHAKLGQVWQVMTPLLNAAVYYLIFGVLMNVQQDIPDYVPFLITGIFVWTFTSQSIMTGTRAISGNLGLVRALHFPRASLPLALALQQLQQLALSLCALVAILFCFGEFPRWSWLLAAPALLLQALFNAGVALVMARLAARTPDIAQLMPFLLRTWMYVSGAMWSIQHLARSGRLPDTVITLLQGNPAAVYIDLMRFALIESYTAELLPPHVWALAAGWALVAFVGGFIYFWKAEETYGRG

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Crispr_ID: NZ_CP040244_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_5

1114483-1114604

Orphan

Consensus_repeat	Method
TCCCCTAGGCCCTGGGGCCTGGGGAGACCCCATGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP040244_5

>merge|NZ_CP040244|5|1114483-1114604|CRISPRCasFinder
TCCCCTAGGCCCTGGGGCCTGGGGAGACCCCATGCCGAAAAGCCCGAATAGCTCCGCTATTAGGCCATTCCGGCGCCTTGCGATGCGTCCCCTAGGCCCTGGGGGCCTGGGGAGACCCCATG

>NZ_CP040244|5|3|1114483-1114604|CRISPRCasFinder
TCCCCTAGGCCCTGGGGCCTGGGGAGACCCCATGC	CGAAAAGCCCGAATAGCTCCGCTATTAGGCCATTCCGGCGCCTTGCGATGCG
TCCCCTAGGCCCTGGGGGCCTGGGGAGACCCCATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137989092.1\|1110814_1111090_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989094.1\|1114649_1115246_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238493
NZ_CP040244.1\|WP_137989096.1\|1117116_1117701_+\|DUF2017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378185
NZ_CP040244.1\|WP_137994671.1\|1122205_1123000_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP040244.1\|WP_137989097.1\|1118006_1119461_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP040244.1\|WP_137989087.1\|1103321_1104461_+\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|273528
NZ_CP040244.1\|WP_137989091.1\|1110000_1110786_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP040244.1\|WP_137989090.1\|1108437_1109925_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP040244.1\|WP_137989100.1\|1123012_1123159_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240061
NZ_CP040244.1\|WP_137989095.1\|1116811_1117117_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP040244.1\|WP_137989089.1\|1107680_1108172_-\|SsgA-family-sporulation/cell-division-regulator	unknown	unknown	gnl\|CDD\|377399
NZ_CP040244.1\|WP_137994669.1\|1115331_1116633_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP040244.1\|WP_137994670.1\|1120131_1121112_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_CP040244.1\|WP_137989093.1\|1111433_1113872_+\|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|368494
NZ_CP040244.1\|WP_137989099.1\|1121108_1122164_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP040244.1\|WP_137989086.1\|1102711_1103185_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP040244.1\|WP_137989088.1\|1106283_1107663_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273050
NZ_CP040244.1\|WP_137989085.1\|1102000_1102582_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP040244.1\|WP_137989084.1\|1101795_1101981_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989098.1\|1119538_1119964_+\|M67-family-metallopeptidase	unknown	unknown	gnl\|CDD\|163701

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137989094.1\|1114649_1115246_-\|isochorismatase-family-protein	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	2.43461e-71
NZ_CP040244.1\|WP_137989096.1\|1117116_1117701_+\|DUF2017-domain-containing-protein	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	3.19376e-61
NZ_CP040244.1\|WP_137994671.1\|1122205_1123000_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	2.95998e-105
NZ_CP040244.1\|WP_137989097.1\|1118006_1119461_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP040244.1\|WP_137989091.1\|1110000_1110786_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	3.34747e-27
NZ_CP040244.1\|WP_137994669.1\|1115331_1116633_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP040244.1\|WP_137989090.1\|1108437_1109925_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.75801e-27
NZ_CP040244.1\|WP_137989100.1\|1123012_1123159_+\|hypothetical-protein	gnl\|CDD\|240061	cd04710, BAH_fungalPHD, BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.	0.00708522
NZ_CP040244.1\|WP_137989095.1\|1116811_1117117_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.32113e-39
NZ_CP040244.1\|WP_137989089.1\|1107680_1108172_-\|SsgA-family-sporulation/cell-division-regulator	gnl\|CDD\|377399	pfam04686, SsgA, Streptomyces sporulation and cell division protein, SsgA. The precise function of SsgA is unknown. It has been found to be essential for spore formation, and to stimulate cell division.	4.02766e-44
NZ_CP040244.1\|WP_137989087.1\|1103321_1104461_+\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|273528	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see . In some bacterial species, this enzyme has been studied as a hemolysin. [Energy metabolism, Amino acids and amines].	0
NZ_CP040244.1\|WP_137994670.1\|1120131_1121112_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	2.71978e-102
NZ_CP040244.1\|WP_137989093.1\|1111433_1113872_+\|M6-family-metalloprotease-domain-containing-protein	gnl\|CDD\|368494	pfam05547, Peptidase_M6, Immune inhibitor A peptidase M6. The insect pathogenic Gram-positive Bacillus thuringiensis secretes immune inhibitor A, a metallopeptidase, which specifically cleaves host antibacterial proteins. A homolog of immune inhibitor A, PrtV, has been identified in the Gram-negative human pathogen Vibrio cholerae.	0
NZ_CP040244.1\|WP_137989099.1\|1121108_1122164_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.81027e-82
NZ_CP040244.1\|WP_137989086.1\|1102711_1103185_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.40892e-27
NZ_CP040244.1\|WP_137989088.1\|1106283_1107663_+\|FAD-binding-protein	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	5.91752e-139
NZ_CP040244.1\|WP_137989085.1\|1102000_1102582_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	9.79364e-12
NZ_CP040244.1\|WP_137989098.1\|1119538_1119964_+\|M67-family-metallopeptidase	gnl\|CDD\|163701	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	6.02147e-38

>NZ_CP040244.1|WP_137989093.1|1111433_1113872_+|M6-family-metalloprotease-domain-containing-protein
MTNRRRAIRASAVVVALAATAATASTFTTAWADHHDIVAAADVRQDPAPGAEVDKTAVDHDLDGPFSKQQEQQRKAAMEAMLSGDAKVERRGGSQVVKLDSKKYVELAREKTDKIFTILVEFGDKVDNTTLVDRADDETDEPKPKFGGTPGPLHNQIAEPDRSKDNSTAWQKDYNQQHFQDLYFGTGKDKKGQPKQSLKTYYEKTSSGRYSVEGGVSDWVKVEYNEARYGSNYCGNSNCANVWDAVRDGVTAWVADQKAKGRTDAQIKADMAQYDQWDRYDFDADGNFNEADGYIDHFQIVHAGEDESAGGGVQGGDALWAHRWYAYGTNAGKTGPENNKAGGTQIGDTGIWVGDYTMQPENGGLGVFAHEYGHDLGLPDHYDTSGNAGAENSTGFWSLMSSGSWLGRGKDSIGDLPGDMNAWDKLQLGWLNYAKVSNEQRATKTTHKLGVAAYNTKNPQALVVELPKKQVTTEVVKPAEGATQWWSDMGDDLKNTLTRSVDLTGKSTASLELQGWYDIELDYDYLYTEVSTDGGANWTALDGTADGKALPRDASGAPALTDVSGAHKKLVYALDAYAGKKFDLRFRYQTDGGAGGKGFTADAITLTADGAALFSDNAENGDNGWVAKGFSRVGASFTKEYEQYYLAENRQYVSYDATLKVGPYNFGFTGDKASWVEHYPYQNGLLIWLWDTSQKDNNTSVHPGQGLVLPIDAHPSPLKWRDGTLLRNRIQAYDSPFGLTHTDGFQLHKAGEATWVPQQAGNPVFDDRKGTYWFEETKRAGVKVTDTNTKIVVVKEPRNGQTITVQVGPSTK
>NZ_CP040244.1|WP_137989092.1|1110814_1111090_-|hypothetical-protein
MPRPNAAQLAYGSATVVFSTVALLLLSRTTTPLGIMVISAAGLLLGLLVTVTMPVHRAAPAPVPPLPRNDEIRVPAARVGAGADTRIGSNS
>NZ_CP040244.1|WP_137989091.1|1110000_1110786_+|RDD-family-protein
MSNDQPTSGQPPEDDPFLKKPQEPSPPPPSGSGSPYGGTPPPEGPPPEGPPPEGPPPEGPPPGGPPPGGPPSGSPYDNVPPPPPPYGSQPYGGGGGYGGTDPLAGMPPLADSGKRILARIVDWLIIAVPLAIIGIPFNVYDRATDSDDFGDTISATSTGTGLVFQLITIVAYVAYDTVMTAKNGQTLGKKMMKLRVAMLNDGTTPPMNASLIRAVVLWLPTLICCACLWPLLLLILILVDKPYKQGLHDKAGKTVVVSVPH
>NZ_CP040244.1|WP_137989090.1|1108437_1109925_+|RDD-family-protein
MATPPGGGGEVPQAGYYPDPSIPGYIRYWNGGAWVPGTSRPAPKEGEAHPAAPAGVMPAGPAPAPNPAPVVPVVEETGPVFLDEEPAAEERPQARPEARPEPEPASAWQADVSRQTGFGGDRDQKVSWGAPPEAEPAAPGGSQVPAQDPRVARPSPSPSPSPSPAAARLGGMPVTPAPAPAPAADPTGGALPGVRQAKPQAEGTMTIRALPPQGGAPAPQGAQTPQGPQALRESQAGGQTPQTPQPSQAQAQPQAQAAQPQAPQASFPHVPAQAKPAPVTTGPGGGAPSWPQQVHQLAQPAPAAAAGPGAEAERPVLPWKPPVEDPFLQAARAQAAARPAGLGKRLLARIVDTLVLGALTTGASIPFVTQALDHIDAKIEAAKQTGETVQVWLLDGTTSLQLGIVLAAFFVLGALYEALPTAKWGRTLGKKLCGLQVQDIEGHEPPSFGAALRRWLVYSVLGLLVLGVLNVLWCLFDRPWRQCWHDKAARTFVAG
>NZ_CP040244.1|WP_137989089.1|1107680_1108172_-|SsgA-family-sporulation/cell-division-regulator
MQNTENTVVERELELKLVLSPERSIPVPAKLVYRADDPYAVHITFHVGSDHPVNWTFARELLVEGVFRPCGHGDVRIWPTKVEGRNVVLMALSSPDGDALLEAPSAQVSAWLERTLRAVPPGTESEQLGIDDGLAELLATTVVADDLWLRDPWPSDESQDGEV
>NZ_CP040244.1|WP_137989088.1|1106283_1107663_+|FAD-binding-protein
MDDLLTRLHADLRAGLPAEALLTDPDVTASYANDMASFCPSGSPAAVVLPRTVEQVQHVMRTATALRVPVVPQGARTGLSGAANASDGCIVLSLVRMDRILEINPVDRIAVVEPGVVNAVLSRAVNDHGLYYPPDPSSWETCTIGGNIGTASGGLCCVKYGVTAEYVLGLDVVLADGRLLSTGRRTAKGVAGYDLTRLFVGSEGSLGIIVGATLALRPRPPVQLALAAEFPSAVAACEAVCAIMERGHTPSLLELMDGTTVRAVNKLANMGLPDTTEALLLCAFDTLDPAADLAAVGELCAAAGATEVVPAEDAAESELLLQARRLSLTALETVKSATMIDDVCVPRTKLAAMLDGTSAIAEKYGLTIGVCAHAGDGNTHPVVCFDHADEDESRRARESFDEIMALGLALGGTITGEHGVGVLKKEWLERELGPVGVELQRGIKRTFDPLGILNPGKLF
>NZ_CP040244.1|WP_137989087.1|1103321_1104461_+|4-hydroxyphenylpyruvate-dioxygenase
MTIDPTPSTARQADPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMKLVAYSGPENGSRETASYVLTNGAARFVFTSVIKASTDWGRFLAEHVAEHGDGVVDLAIEVPDARAAYAYAVEHGATGITEPYEVKDDHGVVVLAAIATYGQTRHTLVERKEYDGPYLPGFVSADPIVEPPAKRTFQAIDHCVGNVELGKMNEWVAFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKFPINEPAIAKKKSQIDEYLEFYGGAGVQHIALATNDIVATVRSMRAAGVQFLDTPDSYYDTLGEWAGETRVPVETLRELKILVDRDEDGYLLQIFTKPVQDRPTVFFEMIERHGSMGFGKGNFKALFEAIEREQAKRGNL
>NZ_CP040244.1|WP_137989086.1|1102711_1103185_-|Lrp/AsnC-family-transcriptional-regulator
MAIDHLDGRLIVLLAQEPRIGVLEASRRLGVARGTVQARLDRLQANGVIRGFGPQVDPAALGYPVTAFATLEIKQGQGADVRGHLATVPEVLELHTTTGHGDMLCRLVARSNADLQRVIDRVVGFEGIVRASTAIVMENPVPLRIIPLVEQAAEDVD
>NZ_CP040244.1|WP_137989085.1|1102000_1102582_-|winged-helix-turn-helix-transcriptional-regulator
MPAPEERVSRTLDPRSLRGLAHPLRIQLLRALRHHGPATASQLAERLGESSGATSYHLRQLAAHGFVEDDPTRGKGRERWWKAAQQGTAVDESLHRNADPEVRGAMEVYLHEIATIHTQELNTWLGTRHDWDAVWAGATDMSDFTLRLPPERLRELNAEIHELINSYHESADPDAPGAARVRMHLHAFPQHED
>NZ_CP040244.1|WP_137989084.1|1101795_1101981_-|hypothetical-protein
MHPDIHLHLHHLDAAELHRSAAESLPRTPLRTQVGWALVTLGLRLAVPASPGSPGPIARVA
>NZ_CP040244.1|WP_137989094.1|1114649_1115246_-|isochorismatase-family-protein
MHRALIVVDVQNDFCEGGSLAVAGGADVAAAITDLVGEAAGAAYQHVVATRDHHIAPGAHFAPAGEEPDYVTSWPVHCVAGTEGVGFHPNFAPAVASGAIDAVFDKGSYEAAYSGFEGRNENGVPLAEWLRERDVSEVDVVGIATDHCVRATALDAAREGFKVHVLLDLTAGVAKATTEKALEELKAAGVELTGKPVV
>NZ_CP040244.1|WP_137994669.1|1115331_1116633_-|nicotinate-phosphoribosyltransferase
MGVPSTALFTDQYELTMLQAALRGGTADRRSVFEVFTRRLPEGRRYGVVAGIGRVLDAVENFRFEAGVLGFLREQGIVDEPTLEWLAAYRFSGDIWGYPEGEVYFPGSPILRVEGSFAECVLLETVILSILNHDSAIAAAASRMSAAAGGRRLIEMGARRTHELAAVACARAAYVGGFDSTSDLAAGFRYAIPTVGTSAHAFTLLHDSERDAFRAQVETLGRGTTLLVDTYDVAEAVRTAVEVAGPELGAVRIDSGDLLLVAHRVRAQLDELGAKDTKIVVTSDLDEYAIASLAAAPVDAYGVGTQLVTGSGHPTCSMVYKLVARAQSADPKAPLTAVAKKSLGGKASVGGRKWAARRTDADGVAEAEVVGTGPVPAELAGRQLLVELVKGGDVVAREPLEAARSRHIAARAGLPMSAIQLSRGEPVLPTEYV
>NZ_CP040244.1|WP_137989095.1|1116811_1117117_+|ATP-dependent-Clp-protease-adapter-ClpS
MSVAPIEIERTESAEEIHAVVEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYSKDKAHKLMLDVHHKGRAVVSSGTREEMERDVQAMHGYGLWATLTQDRG
>NZ_CP040244.1|WP_137989096.1|1117116_1117701_+|DUF2017-domain-containing-protein
MAGRFEPLPGGGAAVALDEVEISILRSLAVQLLELIGPGDEPVEGEDPLAALFAEGPSEPPADPALKRLFPDAYGDEDEELRAAAADFRRYTENDLRARKREDALAVIRSLDALSPTGEGGAVLKLTADESRSWLGALNDLRLTIGTRLEVTDEDESGELYRLPDSDPRKPMVMAYLWLGALQESLVETLMPGD
>NZ_CP040244.1|WP_137989097.1|1118006_1119461_+|amino-acid-permease
MTSAQVDQQHDGNQAADPGAAGEAGSGEGYHRALGARQIQMIAIGGAIGTGLFLGAGKGISKAGPSLILAYAIAGLVIFFIMRALGELLMYRPVSGSFSEYAREFIGPFAGFATGWTYWLFWVVTGITEVTAAATYMTYWWDIPQWLSALVFTIILYGANLISVKLFGELEFWFSMVKVTAIVGMILICAGILTLGFSDAGDTASVTHLWSDGGFFAGEHGIGSTLMSLQLVMFAFLAVELVGVTAGESKDPETVLPKAINTVPWRIAVFYVGALIMILSVVPWTEFQPGVSPFVAAFEKMGLGIGAAIVNFVVLTAALSSCNSGMYSTGRMLRDLALNGQGPRLFTRLTKNGTPLVGTTFSAALMLVGVWINYQWPGDAFDYVVSFATISGMWAWIVILICQIRYRLKADRGELPQSTFKAPGGIWASLFALAFIGMVVVMMGIDKDARVSLYCAPLWGLLLAVAYLVLKARDPQGAAFAKRS
>NZ_CP040244.1|WP_137989098.1|1119538_1119964_+|M67-family-metallopeptidase
MLTITRALYDQIVAHSREDHPDEACGVVAGPVGSGRPERFIPMLNAARSPTFYEFDSADLLKLYRELDDRDEEPVIIYHSHTATEAYPSRTDISYANEPGAHYVLVSTADTDGAGPFQFRSFTIVESVVTEEDVKIVEAYE
>NZ_CP040244.1|WP_137994670.1|1120131_1121112_+|ABC-transporter-substrate-binding-protein
MTWRRRTPRTLLPAAALVPLLAACSAPSDQAPSAKPAPGFPYTVANCGVTTTYQAPPKRAVTMNQHVTEVMLALGLEKSLVGTAYLDDRILPAYKKAYDAVPVLAKEYPSKEALLAANPDFVYGGYASAFDAKAGRGRDDLKAAGISSRLNMEYCPSGASSLADLYREVDEVARTFGVPERGAAWTAGARKTVAATEKNLSGVAPVSVFVYDSGDKTAFTAGGKGIGNELITRAGGRNVFADLDKTFGDATWEQVVARRPDVIVIYDYGSTTVEQKKKRLLEDPALKDVPAIRNRRFAVMPLSDAVLGVRVPEAVQKLAAQLHPAR
>NZ_CP040244.1|WP_137989099.1|1121108_1122164_+|iron-ABC-transporter-permease
MTAATPGTAPKTTSGPVPYTLVVGGLLAALALAVVAGVALGSVRIPVGDVAEILTGRAAPSPYRTIVLDVRLPRVLLGAVVGAGLAVVGTVLQALVRNRLADPFLLGISSGASTGAVLVLVLGIGGGLTTTVAMPTGAFAGALLALVLVYGLARRGGTMTGSRLVLAGVAVSYILSALTTLLLVLAGRPEHFQEAMFWSLGGLGSARWDTLALPAAVLVLGVAALLTLARPLDLLLAGEEGAAVLGLDTARFRAAVFVLASLVTAVMVAAAGAVGFVGLMVPHAARMAVGAPHRRLLPVAALGGALALVLADLAARTVAAPQDIPVGVLTALTGGPFFLWLMRRRAEGSPV
>NZ_CP040244.1|WP_137994671.1|1122205_1123000_+|ABC-transporter-ATP-binding-protein
MTETGTTELRTHALSYGTRLHGVDLIAHPGETVGLVGPNGSGKTTLLRCVYGTLAPTSGRALLDGEDLHALGPKARARRIATVPQDSGGDVELTVRELVALGRSPHKRFWEGDTGEDVARAESALARVGIAELADRPYPSLSGGERQRALVARALVQDPALLVLDEPTNHLDIRYQLEILGLVRDLGTTNLLALHDLNLAALYCDRLYVLAGGRVVAEGPPAEVLTPGLLATVYGVEAEVIPHPRTGAPTVLYLPKTAESASRA
>NZ_CP040244.1|WP_137989100.1|1123012_1123159_+|hypothetical-protein
MRSHSGTRTGNRYDDRMVPHDVSEKTTPGSALLVARLHVDLCRLASAM

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Crispr_ID: NZ_CP040244_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_6

1563709-1563813

Orphan

Consensus_repeat	Method
ATCCCCTGTAGCTCAATTGGCAGAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040244_6

>merge|NZ_CP040244|6|1563709-1563813|CRISPRCasFinder
ATCCCCTGTAGCTCAATTGGCAGAGCAGCCGGCTGTTAACCGGCAGGTTACTGGTTCGAGTCCAGTCGGGGGAGCGCGATCCCCTGTAGCTCAATTGGCAGAGCA

>NZ_CP040244|6|4|1563709-1563813|CRISPRCasFinder
ATCCCCTGTAGCTCAATTGGCAGAGCA	GCCGGCTGTTAACCGGCAGGTTACTGGTTCGAGTCCAGTCGGGGGAGCGCG
ATCCCCTGTAGCTCAATTGGCAGAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137989440.1\|1561587_1563027_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP040244.1\|WP_137989442.1\|1564213_1566193_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP040244.1\|WP_137989438.1\|1557856_1559785_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP040244.1\|WP_137989446.1\|1579950_1580133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989432.1\|1550113_1550806_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989439.1\|1559784_1561518_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP040244.1\|WP_137989450.1\|1583112_1583820_-\|SapC-family-protein	unknown	unknown	gnl\|CDD\|377801
NZ_CP040244.1\|WP_137989449.1\|1582525_1583071_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227803
NZ_CP040244.1\|WP_137989436.1\|1554603_1556526_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP040244.1\|WP_137989448.1\|1582119_1582419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989451.1\|1583850_1584771_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|375319
NZ_CP040244.1\|WP_137989445.1\|1578998_1579646_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379207
NZ_CP040244.1\|WP_137989437.1\|1556592_1557846_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235640
NZ_CP040244.1\|WP_137989447.1\|1580348_1580972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989435.1\|1553225_1554485_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP040244.1\|WP_137989433.1\|1550895_1551765_+\|sirohydrochlorin-chelatase	unknown	unknown	gnl\|CDD\|225049
NZ_CP040244.1\|WP_137989443.1\|1566205_1566808_-\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|379650
NZ_CP040244.1\|WP_137989444.1\|1566804_1577403_-\|DNRLRE-domain-containing-protein	unknown	unknown	gnl\|CDD\|225750
NZ_CP040244.1\|WP_137989441.1\|1563231_1563540_-\|YtxH-domain-containing-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989434.1\|1551800_1553096_+\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137989440.1\|1561587_1563027_-\|sugar-kinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	3.62205e-117
NZ_CP040244.1\|WP_137989442.1\|1564213_1566193_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.1902e-15
NZ_CP040244.1\|WP_137989438.1\|1557856_1559785_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP040244.1\|WP_137989439.1\|1559784_1561518_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	8.8027e-166
NZ_CP040244.1\|WP_137989450.1\|1583112_1583820_-\|SapC-family-protein	gnl\|CDD\|377801	pfam07277, SapC, SapC. This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.	1.44894e-74
NZ_CP040244.1\|WP_137989449.1\|1582525_1583071_+\|hypothetical-protein	gnl\|CDD\|227803	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only].	8.87136e-11
NZ_CP040244.1\|WP_137989436.1\|1554603_1556526_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP040244.1\|WP_137989451.1\|1583850_1584771_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	7.13779e-54
NZ_CP040244.1\|WP_137989445.1\|1578998_1579646_+\|hypothetical-protein	gnl\|CDD\|379207	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. This family of presumed lipases and related enzymes are similar to pfam00657.	1.46449e-17
NZ_CP040244.1\|WP_137989437.1\|1556592_1557846_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	3.8486e-170
NZ_CP040244.1\|WP_137989444.1\|1566804_1577403_-\|DNRLRE-domain-containing-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	1.15376e-20
NZ_CP040244.1\|WP_137989433.1\|1550895_1551765_+\|sirohydrochlorin-chelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	3.30305e-35
NZ_CP040244.1\|WP_137989443.1\|1566205_1566808_-\|SMI1/KNR4-family-protein	gnl\|CDD\|379650	pfam14568, SUKH_6, SMI1-KNR4 cell-wall. Members of this family are related to the SMI1/KNR4-like or SUKH superfamily of proteins.	0.00164607
NZ_CP040244.1\|WP_137989435.1\|1553225_1554485_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	6.44268e-72
NZ_CP040244.1\|WP_137989434.1\|1551800_1553096_+\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0

>NZ_CP040244.1|WP_137989441.1|1563231_1563540_-|YtxH-domain-containing-protein
MRYKLTFVAGVALGYVIGTRAGRERYEQMKKSAKEFTQNPAVRNAAESAAQSSRQVAGKAFHVVSDKVGDKLPASVTERIHALRHHNGQVTTTEDDWGVSNT
>NZ_CP040244.1|WP_137989440.1|1561587_1563027_-|sugar-kinase
MGIVAGLDSSAEFTRIVVCDADTGAVLRQGYAPHPGEPKATDVDPQAWLLSLGEAAGGGLLEGVRAIGVSAQQHGLVPLDPQGGLVRPAMVGNDKRAQVAAADLVEAFGGRQAWAEAVGSVPQSGQPIAKLRWLARSEPENAQRVAMLLQPHDWLVWQLLGRPVRRTTDRGAASATGYWSAGAGAYRPDLVELALGHQAALPEVIGPAEAAGTTPEGLLISAGTGETMAAAFGLGLGSGDAVVSLGASGSVMAVHHEALADPQGLITSFADATGMHLPVVHTSNAVRALRGSAEMLGVESLEELSALALKSTPGASGLVLLPYLEGERTPRLPHTAGTLSGLRRESMKPEHFARAAFEGMLCSLTDALDVLRGRGVEVRRVFLLGAAAELPAVQAVAPAIFGAQVVVPQPADYAALGAARQAAWALGVAQGTLSPAAPPAWQGAAAQVFEPGDELAVGQSVRQQYAATREQIHPGAFGA
>NZ_CP040244.1|WP_137989439.1|1559784_1561518_-|ABC-transporter-ATP-binding-protein
MLLRLLRTHLRPYKKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVHGDTGYILRFGALMIAVSVLQVVCNIGAVYYGARTASAVGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSAVLLAVVPVLGISVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDDYERERFKGSNTELTDVSMATGRLMALMFPTVMTVVNVSSVAVVWFGAHRIAGGGMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLSTESSVVPPAEPVRALERRGHLEVRGADFRYPGAEESVLREVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVRRLDPELMARTVGLVPQKPYLFSGTVATNLRYGKPDATDDELWHALEVAQAADFVKKLENGLNAPIAQGGTNVSGGQRQRLAIARTLVQRPEIYLFDDSFSALDYRTDALLREALKEETADSTVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAGNETYREIVLSQLTEAEAA
>NZ_CP040244.1|WP_137989438.1|1557856_1559785_-|ABC-transporter-ATP-binding-protein
MAGPGGRMMAGGGPDQRSMDFKGSGKRLLKQLAPERGALWLMLIAGVLSVAASVVGPKILGKATDLVFAGVVGRQMPDGTTKAQAIEGLRAKGDGGMADMLSGVDFTPGQGIDFAEVGEVLLWVLAIYVAAGLLMLVSTRMSIKVINRTIYRMREDVQAKLARLPLSYFDKAKRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVVVATKVGKRSQPHFVQQWKSTGKLNAHVEEMYSGHALVKVFGRQDESAADFREQNEALYEAGFKAQFNSGVMQPVMFFISNINYVLVAVVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAPDAPVSEHPAESLGKVALEEVSFRYEEDKPLIEDLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVSAMSRENLRSGIGMVLQDTWLFGGTIADNIAYGATREVTREEIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAASGAYARLYAAQFAQAVAEVD
>NZ_CP040244.1|WP_137989437.1|1556592_1557846_+|sigma-70-family-RNA-polymerase-sigma-factor
MCRTPHWGAVPEPSERDPVVPLIVYGTDSSGPAASVPLPHTPEPAAITLEVAPVQTQTLSPTVPPTLSPTLSPAGGVPPQGPEPDAGPAPVEFVDDVPDVPDVPVPRRAELGGNGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEEKLANTPDLDSQLALDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAQLDLMPERVSEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDATSPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLSKLRDHAFADQLRGYLD
>NZ_CP040244.1|WP_137989436.1|1554603_1556526_+|DNA-primase
MAGRINDDDVKAVRDAVPIDAVVSEYLQLRNAGGGNLKGLCPFHDEKSPSFQVSPSKGLFHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPGHQRGERIRLVEAHKVTAQFYADQLASPEAEIGRKFLAERGFDQAAAEHFGVGYSPAGWDHLTRFLRGKGFSDKELILSGLSQDGRRGPIDRFRGRLMWPIRDVGGDVVGFGARKLRDDDNGPKYLNTPETPIYKKSQVLYGIDLAKKDIAKVSRAVVVEGYTDVMACHLAGVTTAIATCGTAFGGDHIKILRRLLMDNGSARVIFTFDGDSAGQKAALRAFEDDQKFAAETYIAIAPDGMDPCDLRLAKGDQAVAELVEPRTPLFEFALRQIVKRYDLETPAGRAAALDEAAPIVARIKNVGAQHEVAVQLAGMLGILDTQFVVRRVAQLARWARDRGGKGPAPAAPQHGGASRARRATGEYENQARPTAPAGPALNLRSPAHRTERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQCIQDAGGATGAPSDYLSVVREAAPNDTVRALVTELAVEAIFAKAVDEAYAGDQLVTVRLRAVDRRIRDIQGTLARLGANADPEQLAAVQNELWVLTQYAQSLRNNGAAAL
>NZ_CP040244.1|WP_137989435.1|1553225_1554485_+|NAD(P)/FAD-dependent-oxidoreductase
MVDADQTFVIVGGGLAGAKAAETLRSEGFNGRVILIGDERDHPYERPPLSKGYLTGKEERDSVFVHEAAWYARAEVELHLGQPVTAVDREARTVRLGDGTTIRYDRLLLATGAEPRRLDIPGTGLAGVHHLRRLAHADRLRHVLAALGRDNGHLVIAGGGWIGLEVAAAARGYGAEVTVVESEPTPLHHVLGPELGQLFADLHTEHGVRFVFGGRLAEIVGQDGMVLAVRTDDGEEYPAHAVLAAIGAAPRTALAEAAGLALVDRAHGGGIAVDESLRTSDPEIFAAGDVAAAHHPLLHTRLRVEHWANALNGGPAAARAMLGQHVSYDRVPYFFSDQYDLGMEYSGWAPPGSYDQVVLRGDVGKRQFIAFWLKDRKVLAGMNVNVWDVTDPIQQLIRAQSPVDTDSLADPSVPLESLI
>NZ_CP040244.1|WP_137989434.1|1551800_1553096_+|deoxyguanosinetriphosphate-triphosphohydrolase
MEGITDTPGYDDTATERWAAEPDKRPGRTAFQRDRARVLHSSALRRLAGKTQVVTPGSRSHAWDASPRTRLTHSLECAQVGRELGAALGCDPDLVEAACLAHDMGHPPFGHNGEVALNDFAKDCGGFEGNAQSLRLLTRIEPKRFVPDTESGDLVSVGLNLTRAALDAATKYPWPRGGHPEDPDSSKFGVYEDDLPVFAWARQGAPAHRKCFEAQVMDWSDDVAYSVHDFEDGLHAGHIDPNMLFAEPERADIWAVAIGRYVPSDTDPQELADALDRLVDQDWWPHGYDGSAVAQARLKDATSQLIGRFCLAAEGATRQAYGSGRLTRYAAELVVPRETRNECAVLKAVADRYVMQRAEQEALRADQRIVLAELAEGLTARAPEGLDPQFRALFVAAGDDRSRKRVIIDQIASLTDASARTLHARLRPRRS
>NZ_CP040244.1|WP_137989433.1|1550895_1551765_+|sirohydrochlorin-chelatase
MTEPDTTFDSTAELLGRITTQLGSQLSRLHRDRTRRPPMNRPTSSPTLVAVGHGSRDPRARATLALLLDRVRELRPGLDVRLAHIELNAPLVGEVLDELAGEDAVLVPLLFGRGYHVKHDLPAAAAAAPAPRTRIAAPLGPHPLLVEALADRLAEAGWTAADSASRSTGVVLAAAGSRDPESTADIRRTAALLGERLGGVPVVAAYASAATPTVPEALHALAARGRHRIAVASCFTAPGLFATRSAAHAPWIASSPLGAHPALARLVLHRYDQTLTAPTTTPRRELTSA
>NZ_CP040244.1|WP_137989432.1|1550113_1550806_+|hypothetical-protein
MIMEAVRNNAEWCEAMCRAHGRPGAFGPRAWTNGRRTPLYYPDAVTLTADASVRDVLDTIDRSAPGASVKDSFAGLDLAGEGFELLFGARWIHRTAGLPVPSTDASWRPVRTPEELAAWATAWSGGDADEAALFRAELLADPATAVVAGYGADGRIVGGAVLSDSGTVTGVSNLFAAEGTDPAEAWAGCLALVRDGVPVVGYESGDDLPPALALGFEEIGDLRVWLDTGA
>NZ_CP040244.1|WP_137989442.1|1564213_1566193_-|tyrosine-type-recombinase/integrase
MNDSAPPRRLHQRGGALFRVCGPDSTGAVSPSDSTPRTSWPISASEAARTPSGVRPALPSRRHEGRAARFQKTGWPGRGGGAQGGPTTRAGHAGVLRNAGRSYARLPTPRQRGRGAPNRWGPSGAHPAFSRPQRRFGEDGAAVLDDAGKPKQRNIGASCPKLKEKKHGKWSLYFELEDGENGDRRRVRRFGFATKDAAMKKAAELYREAVKGTDILSDATVAEDLDAWIARKKRLARTTTHGYEDHIRLYLKPHLGHIKRRDLKLRHIEAMFTAIERENAERLLHHARIVELTEARDAAHTAWVRASGKTEERRVRRRAYLDANAALREGSKGRRKITSVNTMHRILATLKSFMSDVIKRGDYTTNWAKMVELPPVKKPTALVWTPERVDEWKRTGQKPSPVMVWTPEQTADFLAFIASDRFVGLWNGLIFRGPRRGEMCALPPSEVSLYSPVQYFRISAQVVEVAYRVYDEAPKQDSVRTVTLDAGTAELWVEFDTTRRKEREAWGDAYVESDRFWVHEDGTPLHPDWMSRRFHRLVELSGLPPIRLHDTRHLSAALALLGGAKMKVVQVRLGHKSFQVTSDTYTAVLPQLLDNEAETTSSVVPRPQPGSAPASANASSSRPEKSAADHAEALVPAEGPQVTRDGVSDAPNEGFERVA
>NZ_CP040244.1|WP_137989443.1|1566205_1566808_-|SMI1/KNR4-family-protein
MSTDLSESGRHPAIASLRRLMPSDRGQNEQVDWPAIEAAWGTTFPSDYVAFMAEYGSGGISDSFEVIRPNTPVLDGTSGMGQETANAVADWPASSRPSATRDLRPPVIAWGVTVVGDIACWRTSAANPDDWTVAVFRNRKRDPWREYDCGMAEFLRRTFAGEWDENPFGDETLWNCVPQEFIHWREEADLFDEDNPWAGM
>NZ_CP040244.1|WP_137989444.1|1566804_1577403_-|DNRLRE-domain-containing-protein
MGAITVRNTRPLVISMALTMTVLAGTEQAAQAVGLWSASRSGPGAGELPEQGWGSARGRGHAASGDATDANASGGRTGALKAPGELAPDSGTTRLKLGNAPKAPLPSYRKVPAPRQAAPKGFDPKASAEVPGKRAADARTFANPDGTFTTRYYNERVNFLGDDGKWKEIDTRLAKSSPLARTESVPGPGWQTKSTEDKVYFSEFADAETFVRLGVDDTAGIGYSIEGAARSQGRVNGSVITYPEVRRSTDVELIAGSESVKETLILKDKGAPTEWRFPLALDGLTAKLDGHGGIVFHDPAGRQKGWMPAGWMEDSNKAPNSDEGVISSGVTYGLVREGSRQVLVVTLDEKWLNDPERVFPVKVDPSVNGLEAASGTYVESPYNQNFSSAGELKVGTYDGGGHKAASFLKFNGLDTTLKNAFVINANLSLFNTWSYSCTARPVTVHEITSNWSEGSTSSYPGPATGGALGSKSFAHAWRPEGSTSWPCGAGTWESIPLGDAGRRLVDDWTHGRKANYGLAVKAATDDSRTWKKFNSDNSASGKPSLDVTWSKYGATYGLGGFVQAPTATSEGAFKVTVTNQGQQTWGKTSNFKLRYNLFDANGNLINGDNWSNVRWTPMPYDVGPGGSATVDAKIAPLAPGTYTIQWTMDEYGTRAFVDDGVPGPTVRFDAVNAPPYLTGAAPPSGTVVDTLTPTLWATATDQDRSPSALTYQFEVCEVEGKDVRKNCRGNTHAPSESWTVPAGWLTWAKTYAWYAYANDGKDQSARTAPSILTTQVPQPVITSHLGGADSGRTFGERAGNYATAATDAAVPSAGPELAVTRTYNSQDPRTANAFGAGWATRWDMRAVAEPDGSVVITLDSGSQVRFGRNADGTYSAPSGSVGVLTAVTGGGWTLRDAASTLHTFDATGRLTKVKDGHGREQLLTYTSGKLTKATDALSKRALTFTWSGAHVASVSTDAVGPLAPALKWSYTYTGDQLTKVCPPDSTTACSTYEYTAGSHYRGMVQDANPVGYWRLNEAEGETAASEAVSRTGMNAGHYRDVTLGSTGVLGATGNKAVSFNGTSSYVELPESTLASSTVLSVELWFKTDKPNGVLVGFQDDPLGPTHPNVYNPVLAIDSAGKLRGAFEKSDGGLVPMTSTAVVTDNTWHHAAITSTGTGQTLYLDGTAVGTLAGPVNHSSKTFTYLGGGFTDQSWDGAGTYGTRYYQGLMDEVAVYHRALDAGAVKARFDARTGSSKLTKATLPSGRVGATVEYDGDTGRATKVTDESGGLWQISEPRYAAGSQAYSDAVHASGAVNYWRFGENSGASAADEISGGGNGSYRDGVALGGVGAFLDGDDGAVTLDGSKGVIAVPAESIYDATALSVELWFKTDKPSGVLLGLQNTELGTTPTMWNASLLVDAEGKLRGHLWDGPSAGWPVMGGVKVTDNKWHHVVISGGSAGQSLYLDGAKIGSKSGVVKPETLVHAYLGGGYSSEAWDGQARATRYFNGQLDEAAFYTKELDAATVADHFKARNRLVSGNGSQYEGVVMADAPAGYWQLDETGGTTVVNKVAAAGANGTYTKATLGGPGAFGTGDGSAAEFKGDGWAELAGGHLPNTDLSAELWFKTTKPGVLFSDQEKPLPDAVSYAPVLYVGSDNKLHGQYFTRGVGATNTSPNTVTDNEWHHAVVTAQGSTHTLYLDGAQVAQTTTVPVTHEANQRTYIGAGYTAWWPASPGDGVQYFTGQVDEVAVYPRTLTGDQVARHYDARTHASGSSLTSTVTVTDPTGATTSSTFDAVRGQRRTATTNADGGVTTYAYDTGGFLHTVTDPNGHATITGHDERGNPVSTTTCRDANSCWTSFAEYYNNPADKLDLRNGKQIALRDGRSSGPADNRYRTTTSYTALGLTDTVTSVDGRTATTTYTTGTEPAVGGGTTPAGLVATKKSTGGAIVSYAYFASGDLAKTTAPSGAVSTYAYDGIGRKVTETQVSDANPAGVTTSFAYNAMSRVTAETGPGVKNEITGVTHTARISRTYDADGNLLTESTEDTTGGDATRTTTYRYNMRGLNDSVTDAAGNQATYNHDALGRVISETDPAGNVVTHTYTKRGQLAESVLKNWTGDPSGQTRDLVLGSKAYDPAGRLASTTDAMGATTAFTYYDDGLQATTTAKQVTQSNGSKKDILLGATVYDGAGNPVSAIASGGAATVNTVDALGRTTRSVFDPNGLNRVSTFAYDAEDRLTEQTQSIDGTGKKVTSTTEYDAVGNPVKATVTDGTTTRVSSSTFDQRGLPLTQTSPRGITSTGRFDELGRLVETTAPQVQAEENGGAATAVTPKSLIGYNTFGEATESRDPRGLVTKTETDKLGRTVALTLPDYTPPGTATAITAVSRTAYDQLGNVASTTDPLGRTRSYAYDQLGNLVRSTDPAAGTQSLQAPGATTFSGTSTALSGGGVSTYTWTPTGLPLSATDPTGARTESTYDELGRKLTATTVERKPTLQNLVSRFTWDDAGNQVSSTTPAGRVTSATYDKAGQTLTVTDPAGGVSRAVYDGLGRAIESKDATGRKTVTAYDLMGRPTSVADYGTGTTALRTSSTEYDADGNVTASVSATGARRTYTYDARGQLTKQVEPVTATDSITTTFGYDAAGNRTRLTDGRGKATYYTFNTWGLPESTIEPATTQHWNADVRTWTNVYDAAGRLITELLPGSVKRQKTYDDLDRVIGETGSGTAVATRPRSLSYDLAGRLTGVGGDGVLAGNTYTYNDRGQLLSTDGPGGTSSYAYDADGQMTSRTDVAGATDFTYDLAGRLDTTTDPLTGTQVRSDYDAAGRPTVDEYARPAAGGTWTVGSKRSYTYDSLGRLTDDSIKNTTTGTAVQGTAYEYDLDNRLVKKTASGTAGAGARTYAYDLAGRMTAETSAGTTTAFEWDKAGNLTKKGDITGTYDSRNRLTAWGTQTFDYSARGTVKGIADTAGPARTINSDAFERTVNNGTSTFTYDSLDRVMTHNGTVFTYDGGSNNLVKDGTSTYSRTPGGTLLASATTGTAGSARLAVTDGHTDLVASLSADGTSVTSSRAYDASGNVTASGGANPSVGYQSGWTDSSTGEVNMASRWYQPGTGGFTSRDTWQLDPNPSVQANRYTYGNASPMNGIDPTGHSVLDCFNPSFSRSKLGIFGFAARLTVSPFCVGWETWISGHDSGGAHGSGHGCDGSPMERQQCAAVRNPSPPWRYDPEGITSEKRQHSRYKPDRSGSGHNYSGGGRSRGGTSTLTRPKRPTAPPKPKIPQNPYAGKNPPPAPKHIPKPDWNPSTAIWTATEAVDMVVSGANLLAMLAGGADTVLTPDQVPDTQTAPGADPGTGTDSDDEPRDCRVNGKGWTHIGVPDAANGKRATKAEACLDSEEVKDGSGTEKEIKPPGYKWARDTARWLGLEPRLSINACHLIGADLGGSGSDLANLATCSRQANANVKGPGHMEDHMYSIEKKVREAVDDGQIVRYTVEPHYSGNRTVPTAFTIKATGWYKDGRPGISIKGKEGIVPNSIYSPRFNQWRNLGTWNKPGTTDPIPTGATP
>NZ_CP040244.1|WP_137989445.1|1578998_1579646_+|hypothetical-protein
MTQGSLGHDWVGDLRAKPEFRGYAFVNAGDNGNTSADLLGRVDRDIVACAPDRVTILIGANDLRDGVPSEEFRANLGAIVDRIKDKTSARIALLSLPPAGEDLDSEINGRLRDYNAVIKEAATRATVDYVPVNERFADHLRDQGQRPTYDFGFTTAYLAATKYYLLGDSWDEVARDNGLELFVDHLHLSDRGGAMVTHLVAQWPASAEGAMRSRP
>NZ_CP040244.1|WP_137989446.1|1579950_1580133_+|hypothetical-protein
MAVRVTETTPYDADRARFTPQALARLGQATGARPGSSRYWCAEPDDWLEVTVTDDGTGGG
>NZ_CP040244.1|WP_137989447.1|1580348_1580972_+|hypothetical-protein
MASLSARRTVTATVAALVAGLTLCASSVASSAEQQTEDRRPAVARVVGSGDIVLPYLKDDDVRSFSFDAVAAPFTQPRPGASRGLPVDARGTVRISHYSAEQNITYTFEGQVECLVTGPRTATVSALITKVSHEETGRLGKRVGLSVHDGGKGGKADRVGFSWNGVNLLPNGEDAEVGTCMAPAPYAPVVKGGYTVTHAELPEFPRP
>NZ_CP040244.1|WP_137989448.1|1582119_1582419_-|hypothetical-protein
MSTTIEYVRFACADPEQLTAHRDQLISLLRERYGSDFLGAHLARYEDGSLLDLIVWASPEAAARAAEEMPGDPAVGEFFSLIGEVHEMRHAEVLHSAQD
>NZ_CP040244.1|WP_137989449.1|1582525_1583071_+|hypothetical-protein
MTLKNLREMPWIGERPVLDLANTVVVGAGHAGVDVDLLADPELLASWREKALDRELADLPLEDLAELRAPVRDALDAAARQAPLPGPARARLNALAARAPVTFRVDDAGRLAEQEAGGPVAAAVARQALVLAAGPEQARLRRCPAPSCGMFFLARRRDQAWCSIGCGNRARAARRSGQHED
>NZ_CP040244.1|WP_137989450.1|1583112_1583820_-|SapC-family-protein
MLPTPLNKEEHASLRVTLPRNARYGATQQVAALQAVEFPEVAVTYPIIFVEGPRGLTPCALLGLEQGRNQYVTRDGDWRPHTYRPASVRAYPFFPVEEEDGEMTVYIDADYDGWSTVEGDRLFEDDGSLTPFLAERVEFLRQCAWEAQRTRNFTKELLRLDLLKQQTLTVTPAGGDTVQIGEYWAVDEERLKEIGTGDPLADLISLNLKGYLKLIHTHLISLQNLTGLYSELAND
>NZ_CP040244.1|WP_137989451.1|1583850_1584771_-|helix-turn-helix-transcriptional-regulator
MNSANELGRFLSSRRARVTPVEAGLPLLDRRRVAGLRREEVADLAGVSVVYYTRLEQGRARNPSDAVLDSLARVLRLDPTERAHLYDLAHRARGARTTLASAPVDAEETEGDDGVPVRDGLRRLLAAVGAVPAYVLDPVMDVLDANDLARALLGDPVLTPARRLNLARHVFLDAAARELYPGWADVARQTVGFLRLSAGRRPGDARLARVVTELSRRSEDFRHLWAAQEVRDKTHGTKTFRHPVVGGFDLAYETLALPGDEGWSLVVFTAPDARADAALRLLGSWTAPNPAPTRTRTDSVTHGFDS

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Crispr_ID: NZ_CP040244_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_7

1673661-1673875

Orphan

Consensus_repeat	Method
CCCCGTTGTCGCTGCGCGCG	CRT

3 spacers

The CRISPR arrays of NZ_CP040244_7

>merge|NZ_CP040244|7|1673661-1673875|CRT
CCCCGTTGTCACTGCGCGCGGTCACGACATGCGCGCTGCCCTTCCGCGTCGGCACGTCGATCCGGACGCTGCCGTTGTCGCTGCGCCCGTCGACGTCGTAGGAGGCCGAGCCCGTGGGCAGGGCGATGTCGATCTCCCCGTTGTCGCTGACGGCCTCCACGCGCGCGGGCACGGCGCTCAGCGCGAGCCGTACGGCCCCGTTGTCGGACCGCGCG

>NZ_CP040244|7|2|1673661-1673875|CRT
CCCCGTTGTCACTGCGCGCG	GTCACGACATGCGCGCTGCCCTTCCGCGTCGGCACGTCGATCCGGACGC
TGCCGTTGTCGCTGCGCCCG	TCGACGTCGTAGGAGGCCGAGCCCGTGGGCAGGGCGATGTCGATCT
CCCCGTTGTCGCTGACGGCC	TCCACGCGCGCGGGCACGGCGCTCAGCGCGAGCCGTACGG
CCCCGTTGTCGGACCGCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137989525.1\|1682547_1683210_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP040244.1\|WP_137989510.1\|1661131_1661707_+\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP040244.1\|WP_137989520.1\|1676927_1677383_+\|DUF4231-domain-containing-protein	unknown	unknown	gnl\|CDD\|379418
NZ_CP040244.1\|WP_137989516.1\|1669653_1669881_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|274226
NZ_CP040244.1\|WP_137989523.1\|1679238_1679487_+\|DUF2277-domain-containing-protein	unknown	unknown	gnl\|CDD\|378364
NZ_CP040244.1\|WP_137994712.1\|1679446_1680070_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP040244.1\|WP_137989509.1\|1660457_1661033_+\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP040244.1\|WP_137989511.1\|1661737_1662883_+\|DUF475-domain-containing-protein	unknown	unknown	gnl\|CDD\|237583
NZ_CP040244.1\|WP_137994713.1\|1680196_1680643_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP040244.1\|WP_137989517.1\|1672179_1673553_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP040244.1\|WP_137989524.1\|1680806_1682483_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|277335
NZ_CP040244.1\|WP_137989522.1\|1678815_1679046_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137989513.1\|1663725_1664616_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP040244.1\|WP_137989521.1\|1677854_1678613_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP040244.1\|WP_137994711.1\|1676099_1676381_+\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|376528
NZ_CP040244.1\|WP_137989519.1\|1675237_1675801_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP040244.1\|WP_137989514.1\|1664815_1666003_+\|HpcH/HpaI-aldolase/citrate-lyase-family-protein	unknown	unknown	gnl\|CDD\|379744
NZ_CP040244.1\|WP_137994710.1\|1668579_1669437_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319822
NZ_CP040244.1\|WP_137989515.1\|1666021_1668562_+\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|378594
NZ_CP040244.1\|WP_137989512.1\|1662978_1663716_+\|Tellurium-resistance	unknown	unknown	gnl\|CDD\|226595

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137989525.1\|1682547_1683210_-\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	1.05468e-12
NZ_CP040244.1\|WP_137989510.1\|1661131_1661707_+\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	2.2348e-120
NZ_CP040244.1\|WP_137989520.1\|1676927_1677383_+\|DUF4231-domain-containing-protein	gnl\|CDD\|379418	pfam14015, DUF4231, Protein of unknown function (DUF4231). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 148 and 288 amino acids in length.	3.07496e-25
NZ_CP040244.1\|WP_137989516.1\|1669653_1669881_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|274226	TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (SP:Q50229, ). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors. [Regulatory functions, DNA interactions].	1.39254e-11
NZ_CP040244.1\|WP_137989523.1\|1679238_1679487_+\|DUF2277-domain-containing-protein	gnl\|CDD\|378364	pfam10041, DUF2277, Uncharacterized conserved protein (DUF2277). Members of this family of hypothetical bacterial proteins have no known function.	4.7887e-27
NZ_CP040244.1\|WP_137994712.1\|1679446_1680070_-\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	5.24962e-13
NZ_CP040244.1\|WP_137989509.1\|1660457_1661033_+\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	4.8713e-120
NZ_CP040244.1\|WP_137989511.1\|1661737_1662883_+\|DUF475-domain-containing-protein	gnl\|CDD\|237583	PRK14013, PRK14013, hypothetical protein; Provisional.	0
NZ_CP040244.1\|WP_137994713.1\|1680196_1680643_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.59945e-11
NZ_CP040244.1\|WP_137989517.1\|1672179_1673553_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	3.05943e-05
NZ_CP040244.1\|WP_137989524.1\|1680806_1682483_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|277335	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.27404e-32
NZ_CP040244.1\|WP_137989513.1\|1663725_1664616_-\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	1.10631e-65
NZ_CP040244.1\|WP_137989521.1\|1677854_1678613_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.41343e-44
NZ_CP040244.1\|WP_137994711.1\|1676099_1676381_+\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|376528	pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase. Pterin 4 alpha carbinolamine dehydratase is also known as DCoH (dimerization cofactor of hepatocyte nuclear factor 1-alpha).	7.17263e-09
NZ_CP040244.1\|WP_137989519.1\|1675237_1675801_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	4.72234e-17
NZ_CP040244.1\|WP_137989514.1\|1664815_1666003_+\|HpcH/HpaI-aldolase/citrate-lyase-family-protein	gnl\|CDD\|379744	pfam15617, C-C_Bond_Lyase, C-C_Bond_Lyase of the TIM-Barrel fold. This family of TIM-Barrel fold C-C bond lyase is related to citrate-lyase. These genes are found in the biosynthetic operon, with other enzymatic domains, associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	3.80195e-171
NZ_CP040244.1\|WP_137994710.1\|1668579_1669437_+\|HAD-family-hydrolase	gnl\|CDD\|319822	cd07520, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.56053e-08
NZ_CP040244.1\|WP_137989515.1\|1666021_1668562_+\|phosphoribosyltransferase	gnl\|CDD\|378594	pfam11202, PRTase_1, Phosphoribosyl transferase (PRTase). This PRTase family is fused to a C-terminal RNA binding Pelota domain, pfam01248. These genes are found in the biosynthetic operon associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	4.29402e-151
NZ_CP040244.1\|WP_137989512.1\|1662978_1663716_+\|Tellurium-resistance	gnl\|CDD\|226595	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only].	8.44939e-51

>NZ_CP040244.1|WP_137989517.1|1672179_1673553_-|hypothetical-protein
MAATHARGSSTSAATGAGVGRVALMLPLLAVALLPGAFAGGGTRRWFGGRGESQRAEAQAAKDEAAAAFYELDTAQRDLRISIETITAVDSSPGARRAVDGFAALGQRIDEVSHAYITAVDAHDLDRDELDAATAGRARAELTRAKDELVRVKGELDRFGEGLGPLLDKAETQLARLAPAVERARQALRNASTALDTVRQSGLRADDLAARLAALGPELTRLNEGAGRHGVAETLQRADQVLREAEAVRTEAERLPERAAETDRRLVSLRTRAEALTTRAGAVEPVLSELRRRFSAACWQDLQYVPATAADNVRQAEEKLKEAAKAREEQRWPDATSLLATARALLNSTDEAVSAAGDRLRRLDAVAKDPKAEIDRARFAIRDAQRLAMAGRHTPDPRHARPLDDAVGRLDRAIAALDSGRHPDYWHFLTELEAIRATAAHVVELIREERGGGAGHR
>NZ_CP040244.1|WP_137989516.1|1669653_1669881_-|zinc-ribbon-domain-containing-protein
MPRYEYRCRTCGDTFELSRPMAESSDPAACPAGHDDTVKLLSAVAVGGTATATGGGPAPSGGGGGGGCCGGGCCG
>NZ_CP040244.1|WP_137994710.1|1668579_1669437_+|HAD-family-hydrolase
MVASDLDRTLIYSSAALALGMPDAQAPRLLSIEVHESKPLSYMTEDAAVLLEELAAEAVFVPTTTRTRKQYQRIQLPGPVPKYAICANGGHLLVDGVADRDWHEAVVRRLAEECAPLAEIRAYFTATTDLSWVRKHRVAEDLFAYLVVDRERLPEEWLKRFGEWAEDRGWAVSLQGRKVYAVPKPLTKSAAMREVARRCGATLTLAAGDSLLDADLLLAADRAWRPGHGELADTAWTAPHLDVLAERGVAAGEEILRRFRAAVAEHRSTLPAQLNGSPAALPDPA
>NZ_CP040244.1|WP_137989515.1|1666021_1668562_+|phosphoribosyltransferase
MVWSGTWVAERLGVELIGDEKLPGLLGLALRRNPKRAHLLVSQVLGKHVPQRPSVVYGSGFALGLRVRDLLGRAETARSVVLGYAETATGLGHSVADGMGFAPYLHSTRRPVDGVASAGGFEESHSHATSHLLLPEDPKLLAGDGPLVLVDDEFSTGNTVLNTIRDLHERYPRERYVIVALVDMRSAADLGRLESFAREIGARIDLVAGAAGTVRLPDGVLEKGQALVAAHETAPVPPPRAPRSTRTVPVRVELGWPAAVPDGGRHGFTAPHAVALADVLPAMTERLATALGGARRVLVLGFEELMYAPLRLAVALERAGHDVSYSTTTRSPVLAVDDPGYAIRTRLVFPAHDAPADGPGERYAYNVAGGGFDAVVAVVDSVADTPELHAPDGLLAQLAAHIPHVLLAVVPSYVPSHTPSYVPSSVPSHTPSYGPSSVPSYVPSYGPSSVPAPATEAPERSSMLPEPLRGPAFSSYAPEEVGWLLQDLSDVELEAPTEEREEAIQSGGAHYAESLPVEYQPSDRYQELFHAALETSAARIARAVGTVTETVLAERSGRGSGRPVLVSLARAGTPVGVLMRRWAQARHGLDLPHYAVSIVRGRGIDANALRWLAAHHDPADVVFVDGWTGKGAITRELAEALREFDGFDPEIAVLADPGSCVRTYGTREDFLIPSACLNSTVSGLISRTVLRADLVGPDDFHGGKFYRELAGADVSGVFLDAVAARFDEVAEAVDTDVKELLSADRTPTWEGWAAVERISEEYGIHDVNLVKPGVGETTRVLLRRVPWKILAQRGAGADLAHVRLLAEQRGVPVEEVDGLPYTCVGLIHPQYTRGATGADGKAVVSQ
>NZ_CP040244.1|WP_137989514.1|1664815_1666003_+|HpcH/HpaI-aldolase/citrate-lyase-family-protein
MRHFGHIPSATRAGLFHQEPAEFTADSPASTLAVALGATLYSPATRPRLADDVRKQAARGVVSMVLCLEDSIADADVEAAEVNLVRQFADLAAGETGADGKTPQDVPLLFIRVREPRQITDLTARLGDTVRLLSGFVLPKFTETRGRAFLEALSVAEKACGRRLFAMPVLESPELLHLETRAETLAGIAAIVDKYRERVLALRLGVTDFCSAYGLRRPPDMTAYDVQLVAHVIADVVNVLGRSDGTGFTITGPVWEYFRLGERMFKPQLRRSPFLEGRAEDLRTALIEHDLDGLLREIELDRANGLLGKTCIHPTHVVPVHALSVVSHEEYSDAQDILRPERGGGGVMRSAYTNKMNEVKPHRAWAERTLLRAEVFGVAKEDVGFVDLLTAGLAG
>NZ_CP040244.1|WP_137989513.1|1663725_1664616_-|TerD-family-protein
MTVMTHAMLKGSNVPLDTAAVRAVLRWTPGPGVPDVDASALLLGADGRVRSDEDFVFYNQPRHPSGLVRRLPKKRVAEGLTDTVEADLGGLDPSVDQVVIAASSDGGTFRSVSDLRILLYDAGAADQEPLALFDVTAETGEETAVICGELYRRGEGWKFRAVGQGYPTGLIGLATDFGISVDEGTDGDGDGGTDGDGDGGTDGSGSGSTDVTADPAPDLDATVVHPPVAAPGPVPVPVPVPPQPTAPPAPVPAYGYPQPAAPAQPAYGYPQPAAAAAPAPDPNFRLPPMGPQFVRP
>NZ_CP040244.1|WP_137989512.1|1662978_1663716_+|Tellurium-resistance
MGFWDGLFPGRAAQFDSGSASSNSIDLTKRRPTVSLTKQGAATGNLRVNLSWRMRTSDIEGRSKQSGRLLRHPSKLFKPEVVQAHTQGVVNVDLDLGCMYELADGSKGVVQPLGGFFGDLNTAPYVKLSGDDRFGSPSGETIFINLDHRNEIKRLLFFVYIYDQTPAFDRTHAKVTLYPSSGPRIEIELDERAPQARSCAVFTVENVKDELVVRREVKFVYGFQAELDRLYGWGLQWGRGYKTKA
>NZ_CP040244.1|WP_137989511.1|1661737_1662883_+|DUF475-domain-containing-protein
MVLKTFGWSFAITALGLVAAVLYGGWEAFGIVAILCVLEISLSFDNAVVNAGILKKMNAFWQKIFLTIGVLIAVFGMRLVFPVVIVAISAKIGPIEAVDLAFNDAERYEQLVTDAHPSIAAFGGMFLLMIFLDFIFEERDIKWLGWLERPLAKLGKIDMLSVCIALIVLLISAMTFATQAHQHGGVHVDKAATVLLSGVAGLITYLVVGGLSGYFENKLEEEEEHEHELEEEAKRSGKKVSAVQLAGKAAFFMFLYLEVLDASFSFDGVIGAFAITNDIVLMALGLGVGAMYVRSLTVYLVRQGTLDDYVYLEHGAHYAIGALAVILMVTIRYQIPEVVTGLIGVALIAWSFWSSVRRNKALAAAEGKADASDKTEVSSGV
>NZ_CP040244.1|WP_137989510.1|1661131_1661707_+|TerD-family-protein
MGVTLAKGGNVSLSKAAPNLTQVLVGLGWDARSTTGAPFDLDASALLCQSGRVLGDEHFVFYNNLKSPEGSVEHTGDNLTGEGDGDDESLIVDLTKVPAHCDKIVFPVSIHEADNRGQTFGQVSNAFIRVVNQADGQELARYDLSEDASTETAMIFGELYRYGGEWKFRAVGQGYASGLRGIALDFGVNVS
>NZ_CP040244.1|WP_137989509.1|1660457_1661033_+|TerD-family-protein
MGVSLSKGGNVSLTKEAPGLTAVTVGLGWDVRTTTGTDFDLDASAILVSAEGKVRNDQDFVFFNNLKSADGSVEHTGDNLTGEGEGDDEQVKVSLATVPADVAKIVFPVSIYDAENRQQSFGQVRNAFIRVVNQAGGAEIARYDLSEDASTETAMVFGELYRSGAEWKFRAVGQGYASGLRGIAADFGVNV
>NZ_CP040244.1|WP_137989519.1|1675237_1675801_+|dihydrofolate-reductase
MRSVTYSMNVSLDGYIVGPDGDFDWTAPDEEVFRFWIDEIREVGVHLLGRRLYETMLYWETADQDPSLDDSTLEWAALWNPLPKVVFSTTLSAVQGNARLASGGLAEEIERLRAEPGEGDIAIGGATLAAEAAALGLIDEYRAMVYPVLVGGGISFFPQRERRVDLELVETRTFSSRFVYLRYRVAR
>NZ_CP040244.1|WP_137994711.1|1676099_1676381_+|4a-hydroxytetrahydrobiopterin-dehydratase
MPSRRPRAVTAGCTWRGTPRLGSRGRWPRSQWKPGRPGCGGSWAPHADLDLRMDHLRATITTHDAGFRLTEADFDLAHRIDAIVAAHQELPLD
>NZ_CP040244.1|WP_137989520.1|1676927_1677383_+|DUF4231-domain-containing-protein
MTQYQEWYDRKATKMKAMHLRMRTLSVVGGALVPVGVNLDLGFAKMTATVLSLIVVASVSLESVYRYREQWKNYRSTEQLLGHERVYFAAKVGPYHNLSERDCFTTLVARVEKAIANENSATLNVMTLGGQVNADVQQHGIPAARREAEGS
>NZ_CP040244.1|WP_137989521.1|1677854_1678613_-|GntR-family-transcriptional-regulator
MTDQDSGRRPKYQRIADELRTAIQSGAFAPGDRLPGENDLMTTYEVARMTARQALSVLRNEGLAEARKGAGVFVRTFRPLRRRGIPRLARDHWGTGRSVWSADIEDRALEVDQIKVDEAAASPRVAAALGLPADSTVCVRSRRFVLDDKPVLLSISYLPASLTQGTPITAPDTGPGGTYARLAELGHQPVHFREEIRCRMPTADESDRLALEFGTPVILIGRTAFTGKGVAVELNEMTLDSASYVLEYDFDA
>NZ_CP040244.1|WP_137989522.1|1678815_1679046_+|hypothetical-protein
MQPLPEVGDLVRDTATGRVGFYVDSVAGRFLIRPVNGGVGGEWEAEPGDVQLATPMRELRARAAEINARSRRSLGT
>NZ_CP040244.1|WP_137989523.1|1679238_1679487_+|DUF2277-domain-containing-protein
MCRSIKTLRPPALPYEATEDDIRAAALQYVRKVSGFHRPAAHNREVFDQAVDEIAAATARLLDGLEVRGLKKPEREPQPDAV
>NZ_CP040244.1|WP_137994712.1|1679446_1680070_-|hypothetical-protein
MLDSMGSLRALTAGPWIYAAVATSVLLDVFLPVLPSGVLVITAATAAATATAASPDVPSVLPLLLCAATASVLGDFVAYRLAWRGGARLDRAIARSRRLTVAQERLGAALARGGGLLVVIARFAPAGRSVVSLGAGAARRRIVEFLPWSALAGVAWASYSVALGWFGGLWLGATWFSAGVSILALFLAGALAAYVIRRPAAAPAPAS
>NZ_CP040244.1|WP_137994713.1|1680196_1680643_-|DoxX-family-protein
MTNRLNQAQPYALGLFRIVIGLLFACHGAASLFGVLGGVMGGTIPAGTWPGWYAAVIQLVAGALVVLGLGTRSAAFIASGSMAYAYFKVHQPEALFPLQNSGEGAALFCWAFLLLVFTGPGALALDRLFGARGAGSTADEAQRTPVAA
>NZ_CP040244.1|WP_137989524.1|1680806_1682483_-|alkaline-phosphatase-family-protein
MAAGRLRLGPLLRYVDGVTGDCATVWVETDRPCTAEVRGASGAGGSTRTFQIAGHHYALVPVTGLEPGTTTAYEIRLDGRLVWPLPDSRFPPSTIRTPSPGDGVRVAFGSCRWAAKPATGHDPVGPDALDTLATRLATHPDAERPDVLLLLGDQVYADETSAATRRWLAARRDPRDPPGSEVGEYEEYTRLYDESWQDPEVRWLLSTVPSCMIFDDHDVIDDWNTSAAWLAAMRATHWWRERVLSGLMSYWVYQHLGNLSPAELAADPLYTEILSMPDGTEPLRRFAAEADADPARARWSYRRDFDRTRLVMIDTRAARVLREDARAMLAPSEAAWVREQALAGPGTYDHLLVATSLPWLLPPLIHDAESWNAALCRGERGGPDGRWARFAENLRQRADLEHWAAFPSSYEALTRLLTEAGSGPDAPATVCVLSGDVHHAYVAEPRWPDPEPEARVVQLTCSPLHNAIPRPVRLGFHFGWSRPGRWLGRALARHGRAGRPPVEWDRTGGPWFGNQLMTLTLRGRSARLALRQARRGGRLVTLDERTLTEEPRKTPNGA
>NZ_CP040244.1|WP_137989525.1|1682547_1683210_-|HNH-endonuclease
MLAASIYARQIARRATVLAATAALTVTGLLATAPTAQAAMPTPVSAATARTYLASLTVKAEGSSTGYSRDLFPHWITQSGACNTREVVLKRDGVNVVQDSSCAAVSGSWYSQYDGATWYAASDVDIDHVIPLAEAWRSGANSWTTSKRQLFANDLTRPQLIAVTDNVNQAKGDKDPAEWMPPRTAYRCTYARAWVHTKYYWGLSVDSAEKSALQSVLNGC

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Crispr_ID: NZ_CP040244_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_8

3089427-3089534

Orphan

Consensus_repeat	Method
CGGCCGGGACGCGTGAGGCGGCGTCGAGACCGACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040244_8

>merge|NZ_CP040244|8|3089427-3089534|CRISPRCasFinder
CGGCCGGGACGCGTGAGGCGGCGTCGAGACCGACACGCGTGGCTTCGAGCGGCCGACCGCGCCGGGACGTCTCGGCCGGGACGCGTGAGGCGGCGTCGAGACCGACAC

>NZ_CP040244|8|5|3089427-3089534|CRISPRCasFinder
CGGCCGGGACGCGTGAGGCGGCGTCGAGACCGACAC	GCGTGGCTTCGAGCGGCCGACCGCGCCGGGACGTCT
CGGCCGGGACGCGTGAGGCGGCGTCGAGACCGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137994824.1\|3097331_3097757_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP040244.1\|WP_137990831.1\|3088371_3089181_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP040244.1\|WP_137990825.1\|3080247_3080898_+\|vitamin-K-epoxide-reductase-family-protein	unknown	unknown	gnl\|CDD\|240605
NZ_CP040244.1\|WP_137994820.1\|3082228_3083932_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238832
NZ_CP040244.1\|WP_137990828.1\|3084613_3085504_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP040244.1\|WP_137990830.1\|3086080_3086395_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137990829.1\|3085537_3085984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137990824.1\|3079715_3080267_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377443
NZ_CP040244.1\|WP_137990837.1\|3099900_3101427_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341286
NZ_CP040244.1\|WP_137990826.1\|3080921_3081227_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994822.1\|3092755_3093877_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|336785
NZ_CP040244.1\|WP_137990838.1\|3101423_3101888_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NZ_CP040244.1\|WP_137990832.1\|3089945_3092759_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137990836.1\|3098934_3099804_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NZ_CP040244.1\|WP_137990833.1\|3095352_3096771_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994821.1\|3086874_3088338_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP040244.1\|WP_137990827.1\|3081220_3081919_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040244.1\|WP_137990834.1\|3096740_3097244_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137990835.1\|3097927_3098938_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP040244.1\|WP_137994823.1\|3093901_3095290_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|283431

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137990827.1\|3081220_3081919_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.19795e-65
NZ_CP040244.1\|WP_137994824.1\|3097331_3097757_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	6.25036e-14
NZ_CP040244.1\|WP_137994823.1\|3093901_3095290_-\|VWA-domain-containing-protein	gnl\|CDD\|283431	pfam05762, VWA_CoxE, VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA (von Willebrand factor type A) domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.	1.73848e-18
NZ_CP040244.1\|WP_137990825.1\|3080247_3080898_+\|vitamin-K-epoxide-reductase-family-protein	gnl\|CDD\|240605	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	9.00381e-59
NZ_CP040244.1\|WP_137994820.1\|3082228_3083932_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238832	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.	0
NZ_CP040244.1\|WP_137990828.1\|3084613_3085504_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	2.03708e-58
NZ_CP040244.1\|WP_137990824.1\|3079715_3080267_+\|hypothetical-protein	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	0.00138213
NZ_CP040244.1\|WP_137990837.1\|3099900_3101427_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	0
NZ_CP040244.1\|WP_137990838.1\|3101423_3101888_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	4.055e-76
NZ_CP040244.1\|WP_137990836.1\|3098934_3099804_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.11983e-71
NZ_CP040244.1\|WP_137994821.1\|3086874_3088338_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	4.32622e-124
NZ_CP040244.1\|WP_137994822.1\|3092755_3093877_-\|AAA-family-ATPase	gnl\|CDD\|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	7.835e-43
NZ_CP040244.1\|WP_137990835.1\|3097927_3098938_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	5.2105e-72
NZ_CP040244.1\|WP_137990831.1\|3088371_3089181_+\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	0.00015912

>NZ_CP040244.1|WP_137990831.1|3088371_3089181_+|hypothetical-protein
MDVEQVTEELYGLRPDEFTAARDAYVAAARKEQDAGAAKAIAALRRPTTAAWASNLFVRERRADVERLLALGETLREAHRLLDPEKMREASGQRHKVIAALTREAAGLAEQAGQPVSDTVLREVEQIFHAVLAGADVANEWARGTLVKAPEAAVGFGVVTPEAVPARPTRKAKEPPPRERRTTAEEAEAAVAEAGRRDEELHQAEGSLRAAQARVTEREEQLRAAQQARREAQAEAASADKAVKAARRAAQNAHRAAARATRRLEERAD
>NZ_CP040244.1|WP_137994821.1|3086874_3088338_+|SulP-family-inorganic-anion-transporter
MKPDWLSDPKVWRTEVLAGLVVALALIPEAISFSIIAGVDPALGLFASFTMAVVISIVGGRRAMISAATGAVALVIAPLNREHGLGYLIAAVILAGVFQVILGALGVARLMRFIPRSVMVGFVNSLAILIFMAQVPEMRNVPWAVYPLIVGGLALMVFFPKITTVIPAPLVSIVILTVITVGAAIAVPTVGDKGALPSSLPVPGLPDVPFTTETLVTIAPYAFAMALVGLMESLMTAKLVDEITDTHSNKTRESIGQGIANVVTGFFGGMGGCAMIGQTMINVKVSGARTRLSTFLAGAFLMVLCVVFGPVVSDIPMAALVAVMIMVSFATFDWHSVAPKTLRRMPAGEIAVMVITVVAVIATHNLAVGVVVGSVTAMVIFAKRVAHLAEVTAVVDPDGTTVVYRVTGELFFASSNDLVGQFDYAGDPDKVVIDLSSAHIWDASSVAALDAIETKYAQRGKTVEITGLNDPSARLHGRLTGELAGSH
>NZ_CP040244.1|WP_137990830.1|3086080_3086395_-|hypothetical-protein
MTENEIKLKAIAALTALRAGVGADYVSDLLGEVIPTQFVVPDTDDAREVGLAVLGQLSDPLSALINGFLLAFETVANAYDQTDPETPTDAILQALALDIARETD
>NZ_CP040244.1|WP_137990829.1|3085537_3085984_-|hypothetical-protein
MEVATMLTELAVERVEFACGRCWLEWSADYDIQHYRDEVGDDWEYVYRDGVPVASPYTPAGAPPCPRCGRRWVGRIVARRTIPTPPGAAHTPRLKIIDRSSHRSERHGAPLLGADAHVQPEPLGPPPDEEASFDDTTLRDDWRRDVTG
>NZ_CP040244.1|WP_137990828.1|3084613_3085504_+|NAD(P)-dependent-oxidoreductase
MTDKLTVSVLGTGIMGAAMARNLARAGHDVRAWNRTRAKAEPLSAGGVHIAESPAEAVRDADVVLTVLHDAAAALDVMRQAAPALRPGTAWVQSTTAGVEGIGKLADLAREHELVFFDTPVLGTREPAEAGQLLVLAAGPAESRNKVAPVLEAVGARTVWTGEDGAAGSATRLKLVANSWVLAATNAAGELVALAEALGVDPRAFFELIAGGPLDMGYLRLKAGLVLDGRTSPASFAVATAAKDARLIVEAARQHGIRLDVAAAGAERLARAAAQGHGDEDMAAAYFASFEESSSA
>NZ_CP040244.1|WP_137994820.1|3082228_3083932_+|cytochrome-c-oxidase-subunit-I
MPATGPDGPARPSPSARPSWVSWLTTTDHKQIGTLYLVSALFFFVIGGVMALMMRAELARPGTQIMSNEQFNQAFTMHGSIMLLLFAMPLFTGFANWIMPLQIGAPDVAFPRLNMLAYWLYLFGSLIAASGFLTPGGAADFGWFLYAPLSDAIHSPGLGADLWIMGVALSGFGSIAGAVNFITTIICMRAPGMTMFRMPIFTWNVLLTSLLVLMVFPVLAAALFALECDRKFGSHVFDPANGGALLWQHLFWFFGHPEVYILALPFFGIISEVIPVFSRKPMFGYIGLVAATIAIAGLSVTVWAHHMYVTGGVLLPFFSFMTFLIAVPTGVKFFNWIGTMWKGSLSFETPMLWAVGFLVTFTFGGLTGVILASPPMDFHVSDSYFVVAHFHYTLFGTVVYAMFAGFHFWWPKFTGKMLDERLGKITFWTLTVGFHATFLVQHWLGAEGMPRRYADYLAADGFTALNTLSTIGSFLLGLSFLPFFYNIWKTARYGEKVETDDPWGYGRSLEWATSCPPPRHNFLSLPKIRSESPAFDLHHPEITAIEAADAREADAREAGAREAADHR
>NZ_CP040244.1|WP_137990827.1|3081220_3081919_+|response-regulator-transcription-factor
MLTSSESVRVFLLDDHEVVRRGVRDLLESEPGIVVVGEAATAREALARAPAARPDVAVLDVRLGAGSGGDHEGVEVCRELRARMPELACLMLTSFDDDEALFDAIMAGAAGYVLKQIGGSDLVAAVRAVATGKSLIDPRLTSRVMARIRGPEPTGAAAAGPAELDRLSPREREILDLIGLGLTNRQIAERLFLAEKTVKNRVSSILGKLGVGRRVQAAMIAERLREPQRHHR
>NZ_CP040244.1|WP_137990826.1|3080921_3081227_+|hypothetical-protein
MNPRRSRPVARAALVLCLLATSAAVVSFARGSWSGVAWVLVAGFCSNVAWYCARGTAAAAPGTTPRTTPGTTPGTAPGTAPGTAPGCARNEGCGSCAGPAC
>NZ_CP040244.1|WP_137990825.1|3080247_3080898_+|vitamin-K-epoxide-reductase-family-protein
MTSLLSDPAHAPAAPTAPPAGDRTTGASRGFAWLLVITGALGVLASFVITLDKIRLLAEPDFVPSCNLSPVLSCTNVMRSEQASVFGFPNPVLGLVTYAVVVAIGAGVLAGARYRRWFWLGLNLGTLFGVGFCMWLMTQALYEIGALCLWCCLAWAATILMFWYTTAHNLEHGILRAPRAVVSGVAEFRWVVPAVWCASVLLLIATRWWPYWRSLL
>NZ_CP040244.1|WP_137990824.1|3079715_3080267_+|hypothetical-protein
MITAVGHGDLTPETLRAVERELTARLERIEDPAPGLVRTGAGPAAAFGRAVRATGRRLVVLLPAQGSVPAPLVPADVEPTRELLALAQEVRLMAYEPGDRHSRITADEALISASARLLAVWDGSPSDGRDATAHLVAYARARGIPVEVVWPVGAARGAIRQRTSPDPRPAPTTQEDLDDQPAV
>NZ_CP040244.1|WP_137990832.1|3089945_3092759_-|hypothetical-protein
MSAPTGRTEGTFTALRGQLQEAAATFADGPDALEGILLGIVDDVDRAVREPLEIFPVCHHSPASAVAMARRLREKQPKVVYLELCEDMAPLLTELRNCRLPVAVQAFASKLDGFPEEWAPLSVVAPITEASAEYQAIAYALDTPGVELVLVDRSSDHVFQWDRRREPAAAADPDVPAAEEETALHGDAVGVDIGDLRPRFAELEEHLLHHGKVRHWSEWWHQYVELPLGDSDHDTYRQAMFLIGSLFRRLAPGDADRVRVDEDRERYMWTRMREHLAATDTDPADCLYVCGAFHAASRVAEFGVHGSDTFEIGPRTATTWQHGLIPSSHTAIEAQFGLASGSVSIAATVWAKNLKRTRVEPFRLAGQAGTKKPRPRKTAAAAAPVPVTDIPASDRLTGFLQRPPVLDRLDEAELLGWSVEIVRAARRNGYLASTADAIAVFETSILLAGMRDRARPTPYDFQDAAVTCIEKDAVPGRRDVRRLVEIMMGGDRTGQVGYDALPPLARDVHDRLAPLGLKLQQRGVQRALLDITSQPELERCSDVLWMLRYLMPHGAARPIMGERKLGERPIQESWDVALGTHQRALIELGYEGVSIEQVLEQRLRRAAYDAQATAATVLEAVEDATLYLRSRRLADELGTRALEALSAERSVDGAPEVLRRVRRLLAYYRTSEPVLPPWIESFVKAGYAHYCTLLPTAFTDEDATVRQVAAMLGFLFSMESLALSLGCDRTQLELAVAQSHPEDASKTALLWAARTHLGHLSRAELRSKCDELLGNPLVVPAYPRYLSGFVHALEPVPSLTDFVVEAVSNAFGRLPDPVLLPWLPTLITTLRSDGAELAPLLIREAGRIHPGRLDTLDTWVPPWRTRPEPVTVPRPRHTADVPGAALLAAHPATCDAVARLLGCEGTWDAPATDPRGASLSDRHPATALALEALLATT
>NZ_CP040244.1|WP_137994822.1|3092755_3093877_-|AAA-family-ATPase
MSDLLRAPAEIKYAEELDWLESVDDSPKPFSWRLSPKMVRLFILGSERSDGLDREISQKWFGDRSFVERSIVTLASDRGLLLIGDPGTGKSWLAELLSAAICRNSTQVVQGTAGTTEDHIKYSWNVSMVIAKGQSRESMIPSPIMTAMETGTIGRFEELTRSTSDVQDALISILSEKYISVPELDSENGENIVFAKPGFSVIATANSRDRGVNDLSSALKRRFNFVRIPVVTNKKSEAEIVRFRTEELLRRHQIELDVPPTLLDVLLQSFADLRASSASAGSDDEKLESALSTAEQIGVLEDAILHSNFFGERALTAHTLASSLVGSLTRREPEDLAILNKYLHGVVEPRSKEEGGSWPEFLEGGRDAIATLS
>NZ_CP040244.1|WP_137994823.1|3093901_3095290_-|VWA-domain-containing-protein
MEPYTEGNAEGSAEPDAHDNRRQVLYWRLLARLFDHEEQATLESASLAVVEDIGLPSALLDPQASVDSIVQRHPELAAEFEGLMVPEDASEVAAGGRDRAAEVRRAALVSKVLLNVFATGSGTVTAGQLSRWQSDAGWLERALGCEPGRLRGGGRGATPDLNRLIPAIGPELGALEADLVKRMHLREVLADPKLAARLTPSMSLIEQLLRDKSNLSGVALANAKALIRRFVDEVAEVLRTQVEKSTVGALDRSVPPKRVFRNLDLDRTIWKNLTNWSPEEERLYVDRLYYRHTARKTTPQRLIVVVDQSGSMVDSMVNCTILASIFAGLPKVDVHLIAYDTRAIDLTPWVNDPFEALLRTNLGGGNDGPVAMAMARPKITDPADTVMVWISDFYEFDRSQPLFEAIEAVHRSGVKFIPVGSVTSSGRQEVNPWFRERFKGLGTPVISGHIRKLVHELKTFLA
>NZ_CP040244.1|WP_137990833.1|3095352_3096771_-|hypothetical-protein
MVPADQGGGLMRADLLAEDIAGLDEALAAVDAFDRALVSGLLRPQPAQAAGLAELARAVSGTPLAARVAEAAEKAAAGTADEDHFVALAAARTALLGSVHDALMTRIDEATGHSPGEDGVPEPGARQALNVLVAARSWLSDLARCGWRGIDQDVVSGSAQVVSAMLPDPALRRLATLLDGFAAELAASCPGAALERVPVRRWADLWSRAMLLTLPGAAGVPVTGTATGRLLPLGVDLQEHATAVQAQVHAVFEPADGSVPRLVRAGVSVPKPDTVVDAGLWQLLRPHMSLLAAVGEGRSMDLTDMPVTAEGDLIWSDEQARAGEPADAFATARVALSSATTPVTAPLDRHPTRIAVPVFLEGYVSQQDDEALTFTVAGHPLPVDTDRVPAAGPLTPAAVAASAACIGLLRWDDGAFRLQPLAVETTVRKKTVALHAGAWAGGTTDKAGVRAEKAATDAVAVLRERAGRLLRK
>NZ_CP040244.1|WP_137990834.1|3096740_3097244_-|hypothetical-protein
MSDWERSSTARVIPPARPRKLAKVPFVELADGRLQGVVSSGSDIERVYVSSVAAGTYAFACSTNNNRPCGGARGSFCNHIRALIAEAVLQYGAERVARYLKVDLADAAPSAQSIAAGMSGARPPQGTTKDAAPVFSRFLRHLAYLELAPTTAPLPEMQWFPPTRAVA
>NZ_CP040244.1|WP_137994824.1|3097331_3097757_-|MarR-family-transcriptional-regulator
MRSLHSDTGYLLYRLGLRSGQLFNAALQESGVRLRHYALLRYLATVEGALQRELSTSLGYDPSAIVSLVDDLERLGFVERRPAPGDRRSRIVVLTAAGGAFLRDTDKTSRGVTDELAEPLTADERKVLHGLLLRMAGEGSL
>NZ_CP040244.1|WP_137990835.1|3097927_3098938_+|SDR-family-oxidoreductase
MSSPTPASGRLVDLTGKVAVVTGSGRGLGLAYATALARAGARVVVNDLDAEAAEQAAETVRKAGGGEVVAEAVAVGTAEAAQRLVDRAVTAFGRLDVMVTNAGILRDRVLWKMTDDDFDAVVTTHLKGTFTCARAAAVRMREQGEGGRLVLVGSPAGQRGNFGQTNYAAAKAGIAAMTRTWSMELAKAGITVNAIVPVAATAMTETIPAFAPYVEAMRERGEPLPDFLRKGEGFGTVDDCAALVPFLASDAARDVTGQCVGIGGDRLTLWSHPREVASAYADGGWTPDGIAAAWHTSVGATPQTVGIPAPKTPAPKVPAPKVPAPKVPTSDLNEAR
>NZ_CP040244.1|WP_137990836.1|3098934_3099804_+|amidohydrolase
MNVDALVAIDVHTHAEVSAQGHASLADHLHDASSAYFKVAGDRKPTVTEMAAYYRERHMAAVVFTVDAESATGTPPVPNEEIAEAAAANSDVLIPFASIDPFRGRAGVRQARRLVEEYGVKGFKFHPSIQGFFPNDRALVYALYEVLEETGAIALFHSGQTGIGAGVPGGGGIRLKYSNPLHVDDVAADFPHLKVILAHPSFPWQDEALAVATHKPGVHIDLSGWSPKYFPPQLVQYANTLLKDKVLFGSDFPVLTPDRWLADFDKLAIKDEVRPKILKENAARLLGLV
>NZ_CP040244.1|WP_137990837.1|3099900_3101427_+|long-chain-fatty-acid--CoA-ligase
MRNEGIGAWPARRARKTPHRTALIHEDTSLTYAELHDRVRRLAHALRERGVRRGDRIAYLGPNHPSFLETLFAAGLLGAVFVPLNTRLAPPEIDHQLTDSGAHTLVHAPGYADRTTLRLAHHIQVGTAYEELISSADIATVTPPEEPVSGDDVCIIMYTSGTTGRAKGAVLTHANLTWNAVNVLVDTDLRADERALVTAPLFHTAGLNMLTLPVLLKGGTCVLVESFDADATLALVERHRITAMFGVPTMYDLMARSPRWTDADLSSLRTLNCGGSPVPGRLISAYQRRGLNFQQGYGLTEASPGVLFLDAEHVVSKAGSAGVPHFFTDVRVVRPDLSEAPPGETGEVLVRGPHVMPGYWGLPEASAAALTDGWLRTGDAATVDADGYVTITDRIKDMIISGGENVYPAEVEDALLAHPDVAECAVIGVPHEKWGEVPHAVLVPRPGAALDADAVLASLAGRLAAYKIPKSAVVTDALPRTASGKLRKPELRRRHGVENPSLPEENLT
>NZ_CP040244.1|WP_137990838.1|3101423_3101888_+|MaoC-family-dehydratase
MTITVHGIDALKKLALENDGDLGTSDWLEITQQRIDTFADATDDHQWIHTDPERAAAGPFGAPIAHGYLTLSLFIPLFTGLLDVQGVTTKVNYGLDKVRFPAPVPVGSRIRLAARLASVDDVPGGVQIAVDGTVEIEGGAKPAAVLRSLSRFYV

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Crispr_ID: NZ_CP040244_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_9

4603971-4604072

Orphan

Consensus_repeat	Method
CGGCAGCCGGTCGCTCGGCGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040244_9

>merge|NZ_CP040244|9|4603971-4604072|CRISPRCasFinder
CGGCAGCCGGTCGCTCGGCGAGGTGGCAGGGCACAGCCGGTCGGCACTGCTGACTCAGTGGGGCCAAGCGCGGCCGGCTCGGCAGCCGGTCGCTCGGCGCGG

>NZ_CP040244|9|6|4603971-4604072|CRISPRCasFinder
CGGCAGCCGGTCGCTCGGCGAGG	TGGCAGGGCACAGCCGGTCGGCACTGCTGACTCAGTGGGGCCAAGCGCGGCCGGCT
CGGCAGCCGGTCGCTCGGCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137992109.1\|4605471_4606035_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP040244.1\|WP_137994950.1\|4593194_4594604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137992113.1\|4607778_4608900_+\|amidinotransferase	unknown	unknown	gnl\|CDD\|224747
NZ_CP040244.1\|WP_137994953.1\|4607000_4607522_-\|alpha/beta-hydrolase-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|236660
NZ_CP040244.1\|WP_137992096.1\|4592401_4592938_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|236703
NZ_CP040244.1\|WP_137992115.1\|4609068_4609344_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199892
NZ_CP040244.1\|WP_137994951.1\|4597565_4598771_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP040244.1\|WP_137992123.1\|4611090_4611708_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293802
NZ_CP040244.1\|WP_137992119.1\|4610200_4610452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137992121.1\|4610477_4611008_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP040244.1\|WP_137992103.1\|4599422_4600145_-\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|376450
NZ_CP040244.1\|WP_137992105.1\|4601982_4603473_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP040244.1\|WP_137992117.1\|4609356_4610178_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP040244.1\|WP_137992107.1\|4604126_4605368_-\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP040244.1\|WP_137992104.1\|4601246_4601945_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP040244.1\|WP_137994952.1\|4600229_4601102_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP040244.1\|WP_137992101.1\|4598968_4599442_+\|adenylyltransferase/cytidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|173922
NZ_CP040244.1\|WP_137992111.1\|4606031_4606964_+\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|183829
NZ_CP040244.1\|WP_137992098.1\|4594576_4595821_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240531
NZ_CP040244.1\|WP_137992099.1\|4595817_4597569_-\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137992109.1\|4605471_4606035_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.85199e-24
NZ_CP040244.1\|WP_137994953.1\|4607000_4607522_-\|alpha/beta-hydrolase-fold-domain-containing-protein	gnl\|CDD\|236660	PRK10162, PRK10162, acetyl esterase.	1.77279e-24
NZ_CP040244.1\|WP_137992113.1\|4607778_4608900_+\|amidinotransferase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	4.59287e-17
NZ_CP040244.1\|WP_137992096.1\|4592401_4592938_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|236703	PRK10502, PRK10502, putative acyl transferase; Provisional.	1.77034e-68
NZ_CP040244.1\|WP_137992115.1\|4609068_4609344_+\|hypothetical-protein	gnl\|CDD\|199892	cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins. E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase.	4.12025e-23
NZ_CP040244.1\|WP_137994951.1\|4597565_4598771_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.14448e-79
NZ_CP040244.1\|WP_137992123.1\|4611090_4611708_-\|hypothetical-protein	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.1786e-09
NZ_CP040244.1\|WP_137992121.1\|4610477_4611008_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	3.12957e-26
NZ_CP040244.1\|WP_137992103.1\|4599422_4600145_-\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|376450	pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase. All of these members have the ability to catalyze the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.	1.05638e-10
NZ_CP040244.1\|WP_137992105.1\|4601982_4603473_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	7.9964e-15
NZ_CP040244.1\|WP_137992117.1\|4609356_4610178_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	7.74412e-30
NZ_CP040244.1\|WP_137992107.1\|4604126_4605368_-\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.2469e-52
NZ_CP040244.1\|WP_137992104.1\|4601246_4601945_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.14807e-103
NZ_CP040244.1\|WP_137994952.1\|4600229_4601102_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.64575e-61
NZ_CP040244.1\|WP_137992101.1\|4598968_4599442_+\|adenylyltransferase/cytidyltransferase-family-protein	gnl\|CDD\|173922	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.	1.16107e-26
NZ_CP040244.1\|WP_137992111.1\|4606031_4606964_+\|ketopantoate-reductase-family-protein	gnl\|CDD\|183829	PRK12921, PRK12921, oxidoreductase.	3.15759e-103
NZ_CP040244.1\|WP_137992098.1\|4594576_4595821_-\|hypothetical-protein	gnl\|CDD\|240531	cd13126, MATE_like_11, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.81062e-38
NZ_CP040244.1\|WP_137992099.1\|4595817_4597569_-\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	1.22162e-27

>NZ_CP040244.1|WP_137992105.1|4601982_4603473_-|ABC-transporter-permease
MFFTYLRRELRRRRKAALVVASGLALGIALVIVVNSVASGMKQAQTQVLESLYGLGTDLTVTKAREEPKAGEQAQRPRFEFDAKGDGEEQSSDRLMVQGFQTLPASTVTTVAEQDGVAQAVGGLSLTNLKIDGEFKRGEIQRGQAAPAQPGGPGGGSGSGSGSGKSDTVTGGGAAFDVNSFTLYGTDVTAPDLGPLTTSAITQGRTFTTSETDAKVVVVDSAYAKQEGLAVGKTLTVKGVTFEIIGIATADSGQPAAQVYLPLKQAQTLSDSKDKITTVYVKAADSTRIESVKSAIQKNVAGTTVTTSADLAETVSGSLDTAANLATNVGKWLSYAVLVAAVLVAGLLTSSAVSRRVREFGTLKALGWKSGRVTRQVMGEALVNGVIGGALGIAVGLGGAYLVTAISPTLTAELGAGALTGGGPGGGRMLGGPGLASVRTGGAGGNSLDIALTAPVSVTTVGLAVVLALGGGLVAGGFGAWRASRLRPADALRRVE
>NZ_CP040244.1|WP_137992104.1|4601246_4601945_-|ABC-transporter-ATP-binding-protein
MYELTGVTKQYRRGQERVDALAGIDLTLSQGDRLVIQGPTGGGKSTLLQMLGGLDRPTSGSVMLDGVDLAKLSESRLTTVRSQNIGFVFQSFNLIPTLTAQENVETALVPLGVKAAERRSRAAEALESVGLGERRGHLPSELSGGQQQRVAIARALVKRPKVLLADEPTGNLDESMRDEIVELLEGLWKEHGLTFVMVTHDSAIARRAPRLATIRKGRITLKENRHADPVDA
>NZ_CP040244.1|WP_137994952.1|4600229_4601102_-|alpha/beta-hydrolase
MFTFTSQDGVEIHVHEWLPAGQPRGVVQISHGMGEHAARYAPLAEHLAGLGFAVYAGDHRGHGLSMHAGPGHLGDNGWNLLVEDLATLTRTARERHPGAPVILFGHSMGSFAAQQFLLDHAELVDGVALSGTTAVDQLVVALLEAAQRAQESGIEDAGVFDAFNAAFEPVRTEADWLSRDEKQVDAYLADPLCGFAADDRGMTDMGAAAARLAAPEGIPATLPLYVLVGDRDPLNAGLTLSDLLVSRYRAAGLTDVTYRTYDGARHEVLNETNRDEVVAELTAWIERVAG
>NZ_CP040244.1|WP_137992103.1|4599422_4600145_-|CDP-alcohol-phosphatidyltransferase-family-protein
MGTIATALNELRSAQKSAKGVSLYSRFVNRPVGRYLAAGSYAAGLTPNQVTVISAAFSFAAVAGAALGTPSWTLGLLIWLGLAVGFAFDSADGQLARLRGGGSPAGEWLDHVVDCAKITALHIAVLIAFYRHPGHFGTATDGWLLVPLGFQLAAVVTFFGGLLTEKLKPRPAPGTPAPTPSTLRAVALLPVDHGVFCLVFLLYGGGSAFRWAYSALGAASALFLLAFLTKWFRELSAVRR
>NZ_CP040244.1|WP_137992101.1|4598968_4599442_+|adenylyltransferase/cytidyltransferase-family-protein
MTAGRPYRVGYAPGAYDLFHIGHLNILRHARSQCDYLVAGVVSDEMAELAKGRLPVIPLVERLEIVRNVKYVDAAFVETVPDKLETWKQVRFDVLFKGDDWRGTPKGDRLERDFAGVGVEIVYFPYTVHTSSTQLRRALDLLTQEAEPRSGVSDGLR
>NZ_CP040244.1|WP_137994951.1|4597565_4598771_-|glycosyltransferase-family-4-protein
MVSTNYAPEHAGIGPYATQIAEHWAARGHETHVLAGMPHYPSWSLDPAYAKVWRRTEERAGVVVHRRRHTVPPRQTALKRAAFEASVLAHGLVAPPSMARPHAVLAQMPSLAGGIIGARLAARWSVPYVPVVQDLMGAAAAQSGIRGGDRAAALAARAETYALRRAALVGVIHETFVDKVAAMGVDRGRIRLVPNWSHVPSPSAPRAETRARLGWGEGETVVLHSGNMGLKQGLEVLVEAARRDPKIRIVLLGDGNQRAHLRELGTGIPNLDFMEPVGDDEFPDTLAAADVLAVTQRASVLDMSVPSKLTSYFAAGRPVVASVAAEGGTALEVRRSGAGVLVPPEDPDALLTEIRRLGDDPAAADALGAQGPRHVEAHLTRAAGLARIDALIDEALGGPST
>NZ_CP040244.1|WP_137992099.1|4595817_4597569_-|polysaccharide-biosynthesis-tyrosine-autokinase
MTHTHVSAVEDDEPELLRDQFRQLLRYRVIIGAGIGIGLLGGVWFGMSNADTYVATSQVVLRAPVNDPFNPSISQDKTLNMGSERQTALSTSVAEQAARKLGWTGTVGKLQKDLQVTNPPQSQVLQFTYTADSPQAAADRANAVTQAYLDLRRKQWTDVRATMLEGQQKQLDEVARKHDQKTKEVDRMPDGAARDAEYGVKTNLLNRINELDARISQLKSLDMSAGTVIRTATAPGYSDGPGLPMSLGLGALVGVALGLLAAWVRLVFDPAPRSSGDVARAVRAPVLGTLPRGATDVLLADDHTDARVAEEYRSVAFRLAYDQRFADRRRLLVVAPRGSNEAAVAVASHLAASFAETGKDVLLIEADLRTPTLAGRLRAHAAAAPRWSSPVEADENGWPSRRQLSVDAGESGSFGLVPGERVRNVARALTAPRVSRLIAEADSPNATVVVLAPPVLNYADALALVDRVDGVLVVCDPRSVHRTDLQRIRELIAGAGGTVLGAVVHTPGRRRRAVKQPGGRRGSGGRGRHEPPGPPASPAAPSGSEEFAAEPEEITLGDGSDTVALRSLRAEDLRTGDIRAGDR
>NZ_CP040244.1|WP_137992098.1|4594576_4595821_-|hypothetical-protein
MRRAAAVAASVLDQAASSLTNIAVLVIAARTSSADGFAAFSMVYIVFTVLLGLSAAYVGQSVVLEKGEEHEVGAAARSAVTFTAAASAAAGVLLLAAGAVIGGAAGLAVLALGAVLPVVLVQDGLRYAFSALRQPHRALAADLLRLAGAVPALLLQPHGSSPARLVLVWGLSALPAALLGLALLYPFVRNRPGTPRRYLRKGHLGRRFAVEFAVGNASSQLAVLALGLLASPLVVGALRGATTLFGPLNTLLTSVNAFGPPLLGRAGSRRATVRAAALLAAVLALVALGWAAVLYALPDHVGRQLLGATWQSAAELLPATGSQYAVMAAGTCALVTLRVLRPRATLSVQVVFSLLSVALMLGGGYLLGGAVGVAWGLAAGSALKAVAAWTRVARTRPQPTTPRQDGQRSTAPSS
>NZ_CP040244.1|WP_137994950.1|4593194_4594604_+|hypothetical-protein
MLSRALSIPLVLGFTVFLPLLVAIQPGAGVHDAAYYLQIALTMYAGARLSAMILTSRRKLLQGSFWLFVYMAMGVAPLAQAVLGRVPTPVVGPRSDLTTAVALVLVGCAAFDLGSLLARGRPGGSGRGEERPALVHRRRLYLLVLLAFACSGLFVVKLGGPAVFFSSRQEIIAGIEEAGVSQADSQAGQAFLRGFGTVPALFALLVYSRWLVTSRRARRRPIVIAVFLGLVLLNCVVNNPISNPRYWFLTVMFSLLFTVFPVSAAMYRSALSLGVVMALIVFPFSDRFRYDEKNYRPVETTSVLEPLALKDYDQVGMFANTITLVNSGSRHRYGRQLAGSVLFAVPRSVWPGKPRDTGVMVGQWMGTVNTNLSSPVWAELWIDFGAVGMGAGMMGMGYAAARVDGRFARRGTRRAPPGSLISLVVPLVAGYSFILLRGPLLQASGRVAIALICIALVTTWRQDEGAVLR
>NZ_CP040244.1|WP_137992096.1|4592401_4592938_-|colanic-acid-biosynthesis-acetyltransferase-WcaF
MRNLPAFTLAGYDKGRGRLVQALWFAVMNTLFMAWFCPARLRVALLRAFGATIGEGVLIRHRVRILWPWKLTVGDHTWIGEGAWLLNLEPVTLGAHVCVSQEALLCTGGHDHRAADFRYRNAPITVEDGAWVAARATVLAGVTVGRHAVVAAGTTLHKDLPELTLHTAEGRRPVPVPA
>NZ_CP040244.1|WP_137992107.1|4604126_4605368_-|ROK-family-transcriptional-regulator
MTKTPRTGGAHPVEPKADKASVRRHNLSLVLRTVHEAGETTRASVAAHVGLTRAAVSSLVEQLLDQGFLVESGKTFSGQAGRPGTVLKAADTGPAGIGVEINVDYVSVCVVDLAGTDRVRVTEPLDNRAAAAEVLGRAARIAASVLGRAAERDLRAAGVRLALPGLVSAGTVHQAPNLGWNRVEADRLFAAALTALRPGRSELPVASDNEANVAALAELWFGALGDVRSFLHLTGEIGVGGAIVVNGELLRGAHGFAGEIGHMAVDANGPLCRCGSRGCLEQYAGQSALLRAAGLEEGVTGPGGVEELARRVEAGEPRAVAAVEEAGRMLGYALSGAVNLLDPEVVVLGGIYPRLMPRLGPAVDAELARRVVSGLWTLSANRLRAASTSTDAARGAAAVVIRQVLTDPLAYAS
>NZ_CP040244.1|WP_137992109.1|4605471_4606035_+|helix-turn-helix-transcriptional-regulator
MPLPRDYSGQTCALARSMEIIGERWTLLIVRDAFYGVRRFGEFAVHLGLPRAVLTDRLSTLTQAGVLERLPDTGRREVYGLTPKGVALWPAVRALTSWGEEFYAAGGGPRRVFRHATDDAPIAGDGRCTGCGAPVPVGDILVTPGPGLAPVAEDADPVTAALARPHRLLQPLLTPSRTARSTRGPHS
>NZ_CP040244.1|WP_137992111.1|4606031_4606964_+|ketopantoate-reductase-family-protein
MKILVVGAGATGGYFGALLARSGQDVTFLVRPRRAEVLRERGLRVTGRGEEWSLEPRLLTADALTTPYDLVLLSVKATALEQAIEDIGPAVGPDTAIVPLLNGLAHMDALNARFGSGSVLGGVAKVVTTLGDEGDIVRLAPIAHLTIGEQDGSRSPRVEKIRAVLSEAGIDALVPEDVLTSMWHKWVFITTFGAVTSLMRGTVGEVNAVPGGADLGPAVLAEAAAVSAAAGRPVPESERTTTLDIVTATGSSMVPSLYRDLVAGRPTEVEHLFGDLVARARALEVPTPLLDLATLHLRVHQERVLAAARG
>NZ_CP040244.1|WP_137994953.1|4607000_4607522_-|alpha/beta-hydrolase-fold-domain-containing-protein
MSDDQSRNRPVLEPAAAELAAATAGPPFLYEMPVNDGRKAVDELQSGAVAKPEVDEEWVTVEGGPTGSVRARIVRPAGHEGGPLPVLVYLHGAGWVFGNAHTHDRLVRELAVGARAAVVFPEYDLSPEARYPVAIEQNYLVAQWIGREGAAHGLDPARVAVGVDALRKALHGV
>NZ_CP040244.1|WP_137992113.1|4607778_4608900_+|amidinotransferase
MAVPSDTPANAAEPPLSPVNSHNDWDPLEEIIVGRLEGATIPGDHPVVACNMPPWAARMQGVAGGFRYPRRLVERAQEELDQFIALLESLDITVRRPDAVDHRRRFATPHWSSRGFCNACPRDSMLVVGDEIIETPMAWPCRYFETHSYREILKDYFLRGARWTSAPKPQLTDALFDADFRIPEVGEPMRYILTEFEPVFDAADFMRAGRDLFVTRGNVTNRMGIAWLRRHLGPGYRIHEIESRCRTPMHIDTTFLVLAPGKALVNPEYIDVDRLPDVLSSWDILIAPEPNPIDEHLLRITSMCGKWLNMNVLMVDETRVIAERHHTDTLRALERWGFEPIPCDLLHYAPFGGSFHCATLDIRRRGTLESYVD
>NZ_CP040244.1|WP_137992115.1|4609068_4609344_+|hypothetical-protein
MLERKQRKTRTEITFVLPADTPPGPVSVVGDFNGWDPYAHPLRARQDAMRAVTVTLPRKSSHSFRYLAAGDYWFNDESADGQDGPNSRVNT
>NZ_CP040244.1|WP_137992117.1|4609356_4610178_+|VOC-family-protein
MARSEREGPDVVRMAAEVFGAPCWLSLMARDLHAAQEFYRAVLGWTFTTSSLGRGFSVAELDGVPVAGIDAVAGEFAVPVAWTVYFAVDDADAAVARIRAHGGTVGVGPVAYPPTGRAALATDLEGAAFGVWEGRVLSTWHIGEGEAPAWLELQTRNAFDAAFFYGKVLKWADDGSPGCCEVSYEEDQVVLRHEGQAVARLNSGPVDSGSPAPQSRPRWLVHFKVPDLEAARAAVVEHGGGIVTDDVQVVARDPEGGLFALDELPAVGWPVVP
>NZ_CP040244.1|WP_137992119.1|4610200_4610452_-|hypothetical-protein
MNASIPLVSLAGGPLLIPADRVTGLLRRLAAGWLASTDAGETDLDPGTVLALAGVLSDVADQIDAECIAFLPVRGEGGGTSPP
>NZ_CP040244.1|WP_137992121.1|4610477_4611008_-|universal-stress-protein
MNVNDETPRVVVGVDGSPDSYDALRWAVRHARLIGGTVDVVAAYDVPGAVGRSAPPVSAAFDEEQARQALSDEIRTVLVRAGEVPLVEHVVRGNPAKVLIGASAGAEMLVVGSRGRGGFASLLLGSVSQQCALHASCPVVIVRPDVMEAMEATEATEATEATRATEATKTTEHGPS
>NZ_CP040244.1|WP_137992123.1|4611090_4611708_-|hypothetical-protein
MAWRLRLTLLGVGAMNSPRFAPAGLLVAHRGRRVALDAGPGADPPRRLDAWLVTDEHAELRSALRRMAAERDVEPRMGEVRLGDLRIGAFEVVHTSHPTCGYRIEAGGRVAVWAPEFWEFPSWAGGADVMFAEAAGWDRRIRFRGGVGGHAYVLEVGREALLHRVRRLVYAHIGRPCLRAMDAGLRPEWGEWGREGRTYTLSCTE

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Crispr_ID: NZ_CP040244_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_10

5068995-5069065

Orphan

Consensus_repeat	Method
CGGGCTGCCGTGATTCGCCCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040244_10

>merge|NZ_CP040244|10|5068995-5069065|CRISPRCasFinder
CGGGCTGCCGTGATTCGCCCCGTGGCGTACGAGCGCGCCACGGGCCGGCGCGCTGCCGTGATTCGCCCCGT

>NZ_CP040244|10|7|5068995-5069065|CRISPRCasFinder
CGGGCTGCCGTGATTCGCCCCGT	GGCGTACGAGCGCGCCACGGGCCGG
CGCGCTGCCGTGATTCGCCCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137992509.1\|5080776_5082171_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340886
NZ_CP040244.1\|WP_137992495.1\|5058288_5060076_-\|glyoxylate-carboligase	unknown	unknown	gnl\|CDD\|183066
NZ_CP040244.1\|WP_137994989.1\|5079784_5080711_+\|taurine-dioxygenase	unknown	unknown	gnl\|CDD\|181947
NZ_CP040244.1\|WP_137994988.1\|5063485_5065105_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP040244.1\|WP_137992510.1\|5082167_5082794_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369095
NZ_CP040244.1\|WP_137992507.1\|5077491_5078550_+\|3-keto-5-aminohexanoate-cleavage-protein	unknown	unknown	gnl\|CDD\|377562
NZ_CP040244.1\|WP_137992502.1\|5069167_5070280_+\|transporter	unknown	unknown	gnl\|CDD\|213364
NZ_CP040244.1\|WP_137992508.1\|5078662_5079637_+\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176189
NZ_CP040244.1\|WP_137992494.1\|5057256_5058288_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197713
NZ_CP040244.1\|WP_137992505.1\|5074361_5075858_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341259
NZ_CP040244.1\|WP_137992500.1\|5066929_5067796_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_CP040244.1\|WP_137992506.1\|5076079_5077135_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP040244.1\|WP_137992496.1\|5061405_5061984_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137992497.1\|5062080_5062947_+\|TIGR04222-domain-containing-membrane-protein	unknown	unknown	gnl\|CDD\|275063
NZ_CP040244.1\|WP_137992503.1\|5071377_5072766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137992498.1\|5062967_5063501_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040244.1\|WP_137992499.1\|5065161_5066838_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341278
NZ_CP040244.1\|WP_137992504.1\|5073243_5074140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994987.1\|5060319_5061357_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP040244.1\|WP_137992501.1\|5067809_5068925_-\|winged-helix-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377630

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137992509.1\|5080776_5082171_+\|MFS-transporter	gnl\|CDD\|340886	cd17328, MFS_spinster_like, Protein spinster and spinster homologs of the Major Facilitator Superfamily of transporters. The protein spinster family includes Drosophila protein spinster, its vertebrate homologs, and similar proteins. Humans contain three homologs called protein spinster homologs 1 (SPNS1), 2 (SPNS2), and 3 (SPNS3). Protein spinster and its homologs may be sphingolipid transporters that play central roles in endosomes and/or lysosomes storage. SPNS2 is also called sphingosine 1-phosphate (S1P) transporter and is required for migration of myocardial precursors. S1P is a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. The spinster-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4633e-42
NZ_CP040244.1\|WP_137992495.1\|5058288_5060076_-\|glyoxylate-carboligase	gnl\|CDD\|183066	PRK11269, PRK11269, glyoxylate carboligase; Provisional.	0
NZ_CP040244.1\|WP_137994989.1\|5079784_5080711_+\|taurine-dioxygenase	gnl\|CDD\|181947	PRK09553, tauD, taurine dioxygenase; Reviewed.	1.37447e-74
NZ_CP040244.1\|WP_137994988.1\|5063485_5065105_-\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP040244.1\|WP_137992507.1\|5077491_5078550_+\|3-keto-5-aminohexanoate-cleavage-protein	gnl\|CDD\|377562	pfam05853, BKACE, beta-keto acid cleavage enzyme. BKACE, beta-keto acid cleavage enzyme plays, a role in lysine degradation. In certain instances it catalyzes the conversion of 3-keto-5-aminohexanoate and acetyl-CoA into acetoacetate and 3-aminobutyryl-CoA. The family is found to have at least 14 slightly different potential new enzymatic activities, all of which can therefore be designated as beta-keto acid cleavage enzymes.	2.10619e-76
NZ_CP040244.1\|WP_137992502.1\|5069167_5070280_+\|transporter	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.79368e-156
NZ_CP040244.1\|WP_137992508.1\|5078662_5079637_+\|quinone-oxidoreductase	gnl\|CDD\|176189	cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP040244.1\|WP_137992494.1\|5057256_5058288_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	6.44944e-07
NZ_CP040244.1\|WP_137992497.1\|5062080_5062947_+\|TIGR04222-domain-containing-membrane-protein	gnl\|CDD\|275063	TIGR04222, integral_membrane_protein, TIGR04222 domain. The majority of the proteins with a domain as described by this model have an extreme C-terminal sequence that is consists of extremely low-complexity sequence, rich in Ser or in Gly interspersed with Cys. That C-terminal region resembles ribosomal natural product precursors, although there is no evidence that C-terminal regions of these proteins undergo any modification or have any such function.	1.06591e-13
NZ_CP040244.1\|WP_137992505.1\|5074361_5075858_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	0
NZ_CP040244.1\|WP_137992506.1\|5076079_5077135_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	4.46179e-42
NZ_CP040244.1\|WP_137992500.1\|5066929_5067796_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	3.47675e-15
NZ_CP040244.1\|WP_137992498.1\|5062967_5063501_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.50317e-11
NZ_CP040244.1\|WP_137992499.1\|5065161_5066838_-\|AMP-binding-protein	gnl\|CDD\|341278	cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0
NZ_CP040244.1\|WP_137992510.1\|5082167_5082794_+\|alpha/beta-hydrolase	gnl\|CDD\|369095	pfam06821, Ser_hydrolase, Serine hydrolase. Members of this family have serine hydrolase activity. They contain a conserved serine hydrolase motif, GXSXG/A, where the serine is a putative nucleophile. This family has an alpha-beta hydrolase fold. Eukaryotic members of this family have a conserved LXCXE motif, which binds to retinoblastomas. This motif is absent from prokaryotic members of this family.	7.32971e-42
NZ_CP040244.1\|WP_137994987.1\|5060319_5061357_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	2.41997e-07
NZ_CP040244.1\|WP_137992501.1\|5067809_5068925_-\|winged-helix-DNA-binding-domain-containing-protein	gnl\|CDD\|377630	pfam06224, HTH_42, Winged helix DNA-binding domain. This family contains two copies of a winged helix domain.	1.10099e-64

>NZ_CP040244.1|WP_137992501.1|5067809_5068925_-|winged-helix-DNA-binding-domain-containing-protein
MASKTTNPVLPTRALGRATLARQLLLAPAAMSAKDAVSHLVGLQAQNTKPPYYALAARLDGFRPEDLSTLMESREVARIVTMRSTIHTHTAEDVLTLRPLVQAARDRELKLFRKGLAGVDLDRLGALSRELVEERPRTPKEIREALLAHWPDADPQALSVAARCLLPLVQVTPRGLWRRSGQVCLTTAETWLGRAPGPVPTPDGTVLRYLAAFGPASVKDMQTWCGLTRLREAFERLRPRLVTFQDEHGVELFDLPDAPRPDEDTPAPPRFLPEYDNLLLSHADRTRVVADEARVRMWTGNQAHRVFLLDGSLAGLWRLDEAKERTTMTIQPFGRTTRAQRAELEEEAERMLRVMAPQGVPYEVGFGTVDA
>NZ_CP040244.1|WP_137992500.1|5066929_5067796_+|helix-turn-helix-transcriptional-regulator
MPEQTEAVELRAALLRLRRATGLEVAFGGLLHEGRPLRIAELTGAVTPALRGLAISAGSGLGGKCLALSRPCAVVDYPSARHITHEYDGPVAAEGLRSVIAVPVVVRRKVRGVLYGALRDALPLGERVFDAAVAAARDVEQALAVRDEARRHVPEPGPSWEAVREAHGELRELAPRVGDPELRDRLLAVCGRLETASAGAGGPQRPPGESPGVAPGVALSVAPGVALTPRELDVLAAVASGATNARVADRLGLRPETVKGYLRSTMRKLGAHTRLEAVVAARRAGVLP
>NZ_CP040244.1|WP_137992499.1|5065161_5066838_-|AMP-binding-protein
MTATTATERFRAARDFLLQHREDYETAYEGFAWPRPDRFNWALEWFDVIAAGNDRTALHIVEEDGSETRLSFAEMSARSNRAANWLRAQGVRAGDRIIVMLGNQSELWETALAAMKLRAVVIPATPLLGPADLRDRVERGRARHVIVRAEDTAKFDDVPGEYTRIAVGGAGVGWLAYEKAYGESETFEPDGVTLAEDPLMLYFTSGTTARPKLVEHTHTSYPVGHLATMYWIGLKPGDVHLNISSPGWAKHAWSNLFAPWNAEATVFIHNYTRFDPARLMAEMERNGVTSFCAPPTVWRMLIQADLTQLKNPPREVVAAGEPLNPEVIESVRRAWGVTMRDGFGQTETAVQVSNSPGQRLKEGSMGRPSPGFRVTLVDPVSGRPDVEEGEICLDLSTDPVGLMTGYHGDPERTAEAMAGGYYRTGDIGSRDAEGYITYIGRSDDVFKSSDYKVSPFELESALLEHEAVAEAAVVPAPDPLRLAVPKAYVVLADGWEPNADTARALFAHSRAVLAPYKRLRRIEFAELPKTVSGKIRRIELRERTANGEGTEYAEGDLS
>NZ_CP040244.1|WP_137994988.1|5063485_5065105_-|AMP-binding-protein
MTRSDTTVSDATLSYAHGASPVELLGDTIGANLDRAVAAWPEREALVDVPTGRRWTYAEFGADVEKLAGALLGSGVAKGDRVGIWAVNCAEWVLVQYATARIGAIMVNINPAYRAHELEYVLQQAGVSLLFASLAHKTSDYRAMVEHVRGNCPELREAVYIGDPSWDELISRTAGDRRPAELSCDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVGEMIAYTEQDRICVPVPFYHCFGMVMGNLAATSHGACMVVPAPSFDPAATLRAVEQERCTSLYGVPTMFIAELNLPDFASYDLSTLRTGIMAGSPCPVEVMKRVVAEMNMAEVSICYGMTETSPVSTQTRRDDDLERRTGTVGRVMPHVEVKIVDPVDGTTKPRGQAGELCTRGYSVMLGYWNEPGKTAEAVDAGRWMHTGDLAVMREDGYVQIVGRIKDMIIRGGENVYPREIEEFLYGYEKIADVQVVGVPDARYGEEILACVIPRDPADPPTLDEITAFCRERLAHYKIPRRVEIVGEFPMTVSGKVRKVELRERYATG
>NZ_CP040244.1|WP_137992498.1|5062967_5063501_+|GNAT-family-N-acetyltransferase
MRIRAAAPAELPLLQDIERAAGEPFRSLGMAVIADDEPLPLDVLDAYRRAGRAWVAADEADRPVAYLLTDTVDGAAHIEQVSVHPAAARRGIGRSLIEHLAADAARRGLTALTLTTFTEVPWNAPYYTRLGFRALAESDPHLTSGLRAIQQDEAAHGLATWPRVCMRRELVGVYPVA
>NZ_CP040244.1|WP_137992497.1|5062080_5062947_+|TIGR04222-domain-containing-membrane-protein
MGADTWWFIGASCAQLLCAVALLRTRSPERTELAPQALALLRGGRRAVVVVALVALHQRGAVAAGRRGTIRANGGPGRTRDPVQLGVHSSLRRALGLRVLASQPKARRAVDALRTELGRAGLLRPYGRLRAARVLLVCAAATVATGLVLTAPSGTELALALGAGAVPAGAALALLFLPPTTRAARRLLAGLRERHPLPAHRREVTDGNLVLLYVALYGDPALALFLPRFSRDGGLLGRGGREDGYATGRGWFHGGGHGLADGGGGGSGGGGGGSGGGGGGGGGGGGSD
>NZ_CP040244.1|WP_137992496.1|5061405_5061984_+|hypothetical-protein
MGSHFQTVVDLDATAEDAPALAARALDWLVAQGIVRDERTDCVLGAPLGHPPGPRWASAVAVEDWEPGGGLRIEVGRTVFHGGQGDAQYAVCPHCATRTRFCTEDWEYIEDGAREPFDRAISAWHDTGAAAVTRTHCGRDGDLTAWAWADDFYAFGHLGFEFWDWDEFDPRFLDAFGTALGGHRVVRVWGKL
>NZ_CP040244.1|WP_137994987.1|5060319_5061357_+|hypothetical-protein
MRCPECLRTQTYAAPVFPCACGTPVVPPVIPGATGEPVTHRNWTDEWVTVRCVSCGREDEWPHPELGCACGTVLRVPVRKAGPGPSDGGTSAAPAPAPASAPAPAPAPDLPGPGAGPGAGPGAGPGAGPGPEAAPDDQGRGSGSAAAAADTDRWPGGGGTGTQSGDGAEAGWWFADGAGAPDNAHQVPGPPASAGRRTFAERYPTHIPLPPTAPPPAPPRPSFRPVTIRTARDAVAASAGYLRWLGFRNVVQPEERSASGVDLRAPGLVAQVDPSTRPTPLRAVECLWLNGLSTSATSVFFSLAGYTPDARSRADELGIPLFTLDLTGTPQPVNTPADELITTGA
>NZ_CP040244.1|WP_137992495.1|5058288_5060076_-|glyoxylate-carboligase
MPRMTAAAAAVEILKREGVTNAFGVPGAAINPFYRELKNVGGISHTLARHVEGASHMAEGYTRAKAGNIGVCIGTSGPAGTDMITGLYSAIADSIPILCITGQAPVSKLHKEDFQAVDIAAIAKPVTKKATTVLEAAQVPGVFQEAFHLMRSGRPGPVLIDLPIDVQLTEIEFDPETYEPLPVYKPQATRAQAEKALRFLLESERPLIVAGGGIINADATDLLVEFAELTNIPVISTLMGWGTIPDDHELAAGMVGVQTSHRYGNATFLESDFVLGIGNRWANRHTGYNLDAYTKGRKFVHVDIEPTQIGKIFAPDYGIASDAKAALELFIEIAKELKAAGELPDFTAWAASAQERKATLQRRTHFDNIPLKPQRVYEEMNKAFGPETRYVTTIGLSQIAAAQFLHVYRARNWINCGQAGPLGWTIPAAIGAATADPETPIVALSGDYDFQFMIEELAVAAQHKVPYVHVLVNNAYLGLIRQAQGGLGINFEVNLEFENINTPEIGVYGVDHVKVAEGLGVKAIRVTDPDKLGEAFEEAKKLAQEFQVPVVVEAILERITNIAMSKTVDMSDVTEFEELATEPGHAPTAIKALKV
>NZ_CP040244.1|WP_137992494.1|5057256_5058288_+|ArsR-family-transcriptional-regulator
MGWWQIDADALAGSRFLLSPLAEAAAALQTLDLRKTAHPGESAWLTDHLPAYRARLADEPVDALLVRAALGTAWNADFVTPTPLGEREQSFEEELTRIRETPPAVAVADLSVSLGGPVPEPLRSATDLPRRMAELLTWVWRETVLPTWPRRRRILEADVLARTAQLTQGGWAAALDELCPGKMRWLGDGRLQINTRDHPPRSVAGARLLFVPVTPSRGWVSWEGTERYAIVYPCAGALADMEGPVVPEALGALLGTARAGVLVRLESPKSTSQLVALTGQGLGSVGRHLKVLLDARLVRRRRAGRSVLYDWTEAGAVLVRAQIRAQSGPRSGALGAGAVTSGG
>NZ_CP040244.1|WP_137992502.1|5069167_5070280_+|transporter
MSERRPRAAWRRQPEPPEPQRSGPGAVPADRPSVVQATLYRDGRRVASPESLADTFRQLREHPAGMAWIGLHRPTEPELHSLAREFDLHELAIEDALEAHQRPKLERYGDTLFVVLRAARYLDAQEEVDFGELHIFVGQDFVITVRHGAAPDLSAVRHRMEENPDLLALGPEAVLYAILDAVVDGYAPVVEGVQNDIDEIETEVFGGDPAVSRRIYELSREMVEFQRATRPLVGMLHGLMAGFAKYGTDEELQRYLRDVADHVTHTSERVDGFRQALTEILTVNATLVTQQQNAEMRALAEAGFEQNEEIKKISSWAAILFAPTLVGTIYGMNFDAMPELDWAFGYPFAILLMAAVCTSLYFIFKRRDWL
>NZ_CP040244.1|WP_137992503.1|5071377_5072766_+|hypothetical-protein
MKPTEEVLQDLTQPSNISVHSDDALVGKVEAAIAADDEKRKENEDEPLRRKPDLVPIQRAELPRQFEVTLWDVLHTLARATALSWRGAGRGLAEHWGALKYTQALAGGRDSFLGLTDEGHRIADHYKSLQSGELGVGFALTLAEHMLRSRFPDHSVTIVPADTALRAGWALTSRDKGEKVKYRYRPPYFAEVWRPGEPSLAIPLACKGNHGNSATSADQLASASVHAEAVHIGAWNETPSLLFSTELPTDEGTMTVHALQAPGSGGRLFPAEGREANLNAPPVQANVMPDIHPPAEGLVAPEPVRGCHVQPKDYAWFQESLAHTTAAGLMAFTGSGLATARHLTDRQGRKRFTGFEHAASTSVQDAAHTLLGTEYAGTDHVFRLNGPRVEAFSGVAVDLFDLLSGGDIKEYRTLVHASRHTRPRLAFDKDWGGPVSVHADGSVFALRLLPGQDEESRPGSAR
>NZ_CP040244.1|WP_137992504.1|5073243_5074140_+|hypothetical-protein
MTEMPNEVHLALSGRITFEQDISVAQGAQVIAIIQAPAGLVRATPGPEPPRLLPELALTREESTRELPSNDEPTRQPLLESPRHALDSSGAKTIPEKITAFAAYLTLVEGHETFGHQDLRRLFERARERIPTHFSRDFDKAVRAGWIHEGTTKGAYYLSDSLRNLLEDGYAGHRGKRTRRSQAPATAARRKPRSIPVPDDFAEVDHIPASIDGVPPYQQVKLKRDRLLWAIKLAKELGVPALKSTDVTWLTDKLGDAIISRDITAHFKGLHRDGLANRSVIDNAMRITEKGEEYLSSL
>NZ_CP040244.1|WP_137992505.1|5074361_5075858_-|long-chain-fatty-acid--CoA-ligase
MTNLATFLVNSAAARRDQIAVRHDDTTLTYGELDDASARFAAVLRDRGLRPGDRVAMTMPNVPLFPVVYYGILRAGGVVVPMNPLLKAREVAYVLRDCGARVAVTFPLFAEEVAKAAAEVGTECLVTEPSAFHALLAAAEPLPGAVERADDDPALILYTSGTTGTPKGAELTHRNLVSNTATTAETLLHVGPDDVLFGGLPLFHAFGQTCALNTAVAAGATLTLLPRFDPQRALEVMHRDGVTVFLGVPTMYSALLHAELPEGYDASSLRLAVSGGAAIPVEVLHGFERRFGATVLEGYGLSETSPVAAFNHPDRPRKAGSIGQPVRGAEMMLLAEDGSVAGPGEVGEIAIRGENVMKGYFNRPEATAEAIRDGWFHTGDLARVDEEGFYFIVDRKKDLIIRGGYNVYPREIEEVLYEHPAVAEAAVVGVPHDVHGEEIAAVITLRGGARATPDEIRAYVKERVAAYKYPRIVTFTAELPKGPTGKILKREITVDTPS
>NZ_CP040244.1|WP_137992506.1|5076079_5077135_+|AraC-family-transcriptional-regulator
MRPLVRTAALSGFVELSRSLGVDPHTLMKRVGLDTADLAVQDRWISGPDVVRLLELSAAASHHDDFGLRMAELRRFSNLGPISLVVREEPDVRSALGLLLRHEHMYNELLHARLSERNGLATIKVDLRLGETAPSARQATELAVGAFARILRGFLDPRWQPVSVWFAHSAPADSGRHRRLFGPGLEFDREFNGIVFYADDLDAPNAMADPQLRNYARQYFDAIAVPRDTSEVDRVRELIEALLSTGRCSIEQVARSLGVDRRTVHRHLAHAGETFSSLLNATRMRLAEQFVANPRRSLTEISDVLGFSSLSAFSRWFREQFGCSPREWRKRQGRQQEREREQEQEQESDRG
>NZ_CP040244.1|WP_137992507.1|5077491_5078550_+|3-keto-5-aminohexanoate-cleavage-protein
MHFHDDSLFPENQEKLVIQAAPYGPEWLPGDADDLPLTMDEHVQAAVDCYNAGATVLHIHVRELDGKGSKRMSMFNELLARLREAVPDMVLQIGGSISFAPEGEGGDAKWLAYDTRHLLADLTPAPDQVTIAINTSQMNIVEIMTDDDLEGTSIAKPDYYRAYRDMVVEAGPEFYLEHLKRLRGNGIQPHFQLATLAQLETVERLIRAGIYTGPLILNYVAIGGGFAGRHPADLIEFVRRVPDGAVLTIESSMRAVAPMNAIAIALGVHVRVGNEDNLWRRKGERMSSVEQVEQMVQIANALGRDIATGAEAKEIYKIGEYYADADETLARLGMVPNRRPGQRGFMLRDAAS
>NZ_CP040244.1|WP_137992508.1|5078662_5079637_+|quinone-oxidoreductase
MAHAVRFYETGGPDVLTWEKVTVGDPGPGEVRIRHVAVGLNFADTYFRTGLYPVRLPDGIGVEASGVVEAVGEGVTHVAEGDRVTYTGSPLGAYSTERVMPASHLIKLPDEIGCETAAAMTMRGLTSAYLLRRIHPLKAGDTVLLHAAAGGVGLIVSQWARLLGITVIGTVSSEEKAELARAHGCEHIIHYRREDVAERVRELTDGAGVPVVLDSVGKDTFAGSLASLARRGLLVCFGTASGPVPPIDAMQLAMNGSLFVTRPALADYIADPAERDALAGELFGHVASGRIKIEINQRYSLEDAAQAHRDLEAGRTTGSSVFVL
>NZ_CP040244.1|WP_137994989.1|5079784_5080711_+|taurine-dioxygenase
MPDTLRPKELPPAPPAPPRPGALRSSLDVEPLTCTIGAEVSGVSLADAARDDDLFAEIKSLLLQYKVLFLRDQDITRADHIAFAERFGALEDHPVAGSDPDHPGLVRIYKDLDSAPEHYENALHTDGTWRENPSMGAVLRCVESPPVGGDTIWVNMTEAYRRLPEHIRAQIQDLRARHSIEATFGAVMPEDQRHALKARFPDAEHPVVRTHPETGEQILFVNAFTTHFVNYHTPANVRFGQDYAPGASHLLNYLISQAAVPEYQVRWRWRKNSVAIWDNRSTQHYAVQDYWPGVRRMERAGIVGDRPF
>NZ_CP040244.1|WP_137992509.1|5080776_5082171_+|MFS-transporter
MGFLTTAESAPGRTGSGSGSGSSEWPVSRRYAWVVFALSFGLLLSDYMSRQVLNAVFPMLKAEWLLSDARLGSLSGIVALMVGLLTFPLSLLADRWGRVKSLVLAATMWSLATLGCAVAATYGQMFIGRLLVGVGEAAYGSVGIAVVLSVFPRALRATLSGAFIAGGAFGSVLGISIGGAVAQAYGWRWAFGVMGVFGLVLAGIYAIVVTEKRLSPGSGPAPAPGTADAGTRGELRALLPKLFSSVSVISAYVGSGLQLFIAGALIAWLPSYFNRSYDMPTAKAGATAGLFALVIGVGMIVGGIVSDRISRRAPIRKWAVAIGCSVGSLVLLMTAFRLPAGPAQLLVLGLGTLLCAGTAGPGAAMVANLTPAAIAATAFATLTLAQSLLGLAPGPAVTGMLADRFGLLGALQLVPLVAIAATAAFLIGRSRYEHDLRRLTAPITPGAPGAPGDTVEPKEPEPAS
>NZ_CP040244.1|WP_137992510.1|5082167_5082794_+|alpha/beta-hydrolase
MTGDAESTIVIVPGMREHVEDHWQTILAERLGHAGRTVRVVPPLVRDRLSRDAQVANVVDVMARITGPVVIVAHSAGVLTTVHWAQCHDADVRGTDVRGALLAVPPDFETPLPDGYPAPDELATHGWTPVPRKPLPFPSIVAASSDDPLGSLGRVAELARDWGSRLVEIGPVGHLNPASGHGPWPQSEALVEALELGWCHTTAPRPAS

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Crispr_ID: NZ_CP040244_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_11

5949084-5949167

Orphan

Consensus_repeat	Method
CAAGTCCAGCTACAGCGGCAGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040244_11

>merge|NZ_CP040244|11|5949084-5949167|CRISPRCasFinder
CAAGTCCAGCTACAGCGGCAGCGAGGGTGGCGCCTGCCTCGAAGTCGCCTACGACTGGCACAAGTCCAGTTACAGCGGCAGCGA

>NZ_CP040244|11|8|5949084-5949167|CRISPRCasFinder
CAAGTCCAGCTACAGCGGCAGCGA	GGGTGGCGCCTGCCTCGAAGTCGCCTACGACTGGCA
CAAGTCCAGTTACAGCGGCAGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137993202.1\|5944753_5945161_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|223329
NZ_CP040244.1\|WP_015036350.1\|5955757_5956054_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP040244.1\|WP_137993200.1\|5943170_5943641_+\|DUF4265-domain-containing-protein	unknown	unknown	gnl\|CDD\|379459
NZ_CP040244.1\|WP_137995060.1\|5949287_5949686_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_030492500.1\|5954007_5954241_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993197.1\|5937880_5938441_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP040244.1\|WP_137993205.1\|5948233_5949061_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP040244.1\|WP_137993212.1\|5961806_5962361_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP040244.1\|WP_137995059.1\|5943776_5944385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993198.1\|5938418_5940665_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP040244.1\|WP_137993208.1\|5952480_5953992_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP040244.1\|WP_137993207.1\|5949682_5952439_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP040244.1\|WP_137993201.1\|5944492_5944711_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993210.1\|5956184_5958332_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP040244.1\|WP_137993209.1\|5954246_5955752_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP040244.1\|WP_137993203.1\|5945278_5945659_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP040244.1\|WP_137993199.1\|5940864_5942961_-\|phospholipase-C,-phosphocholine-specific	unknown	unknown	gnl\|CDD\|274561
NZ_CP040244.1\|WP_137993204.1\|5945676_5947041_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP040244.1\|WP_137993211.1\|5958573_5960754_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP040244.1\|WP_137995061.1\|5960787_5961783_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|239426

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137993202.1\|5944753_5945161_-\|RidA-family-protein	gnl\|CDD\|223329	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis].	8.24907e-22
NZ_CP040244.1\|WP_015036350.1\|5955757_5956054_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	2.20028e-37
NZ_CP040244.1\|WP_137993200.1\|5943170_5943641_+\|DUF4265-domain-containing-protein	gnl\|CDD\|379459	pfam14085, DUF4265, Domain of unknown function (DUF4265). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 139 and 168 amino acids in length.	8.18169e-37
NZ_CP040244.1\|WP_137993197.1\|5937880_5938441_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	7.72579e-23
NZ_CP040244.1\|WP_137993205.1\|5948233_5949061_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000107086
NZ_CP040244.1\|WP_137993212.1\|5961806_5962361_-\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	9.26603e-05
NZ_CP040244.1\|WP_137993209.1\|5954246_5955752_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP040244.1\|WP_137993198.1\|5938418_5940665_-\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.76375e-95
NZ_CP040244.1\|WP_137993208.1\|5952480_5953992_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP040244.1\|WP_137993207.1\|5949682_5952439_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.40849e-07
NZ_CP040244.1\|WP_137993210.1\|5956184_5958332_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	4.75411e-104
NZ_CP040244.1\|WP_137993203.1\|5945278_5945659_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	2.43842e-37
NZ_CP040244.1\|WP_137993199.1\|5940864_5942961_-\|phospholipase-C,-phosphocholine-specific	gnl\|CDD\|274561	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream. [Cellular processes, Pathogenesis].	0
NZ_CP040244.1\|WP_137993204.1\|5945676_5947041_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.59079e-66
NZ_CP040244.1\|WP_137993211.1\|5958573_5960754_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP040244.1\|WP_137995061.1\|5960787_5961783_-\|methionine-synthase	gnl\|CDD\|239426	cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding of the folate substrate.	1.98555e-69

>NZ_CP040244.1|WP_137993205.1|5948233_5949061_+|helix-turn-helix-domain-containing-protein
MQPGKKPRKKVPSWEVVGALVGLYRKNAGMTQPHLASLLCIGLETLGSIEQGRRPLRIKLAAELDELLDTKGALTAAVSKVPERERYPEFARDFIDEEAKALSLCWYENQVVPGLLQTPEYARAVFDSLYPPITEQQAEERLLARIDRQRIFEQKPWPPMMSFLLNESILEQPIGGAEVLHEQIRHLREAAELPFLALQILPKKLTRHAGLDGPMVLVETPEHAHLAYIEGQRVSFLIDDPDEVGILQQKYGMLRSQALTPEETMGLLDRLAGET
>NZ_CP040244.1|WP_137993204.1|5945676_5947041_-|MFS-transporter
MLSARRRWTVLAVCCLSMFLVGLDTTIVNVGLPAIGRGLDVDTRGLEWIVDAYTLVLASLLISSGALADRFGRRRVFQCGLVVFGAASLVCALAPSAGVLVAARALQGVGASMLSPVALAIVVNAMPDPKERAQAIGVWASVFGLSMAAGPVTGGALLAGLDWRALFWINAPVIAAALLLSALFVPESRAQRARRLDLPGQVLLTAVLAVVVGVLIEGPRIGWTSPAALAGYVGAAAATAGFVWVESRRREPLMDLRLFGRPVFSGAVVGAVAVFVALSMTLLLNTLYLQHTREWTPLAAGVATLPLAAGAIVCAPWSGRMVGRTGPRLPLLLAGGFITVGGLCLVGLTPHTSVLLLLAAYVLIGIGFGFANAPITNTAVNGLPPARAGVAGAITSTARQLGSAIGIALAGGLVTAAGPTGLAHASRPGWILVAGCGVLLLLVARVGPASPQAR
>NZ_CP040244.1|WP_137993203.1|5945278_5945659_+|helix-turn-helix-transcriptional-regulator
MGTKQFSGSPEDADLRRADSLAREIFSDVANKWALLIIEALGEGTLRFSELRNEIEGISHKMLTQNLRMLERNGLVERTVHPVVPPRVEYALTEPGQALRVTIDGLCAWTHRYLGHIETSRHRFDA
>NZ_CP040244.1|WP_137993202.1|5944753_5945161_-|RidA-family-protein
MAITLVNPAGLPEIDVYRQVSIASGSKLVFVAGQVAWDGAGVTVGAGDLAAQVEQCYLNIATALAGAGGSFDDVAKLTVHVVDWTPDKMPLLLEGMSRAAAKLGVTPVPPATLLGVAALDVPDHLVEIEATAVLD
>NZ_CP040244.1|WP_137993201.1|5944492_5944711_+|hypothetical-protein
MTDFRDFSFKLLVVEKLMYWDETLAPMFSLREHMQAHGVDDLDTLFTGGRALEHMLPGSLELLAARGIAARC
>NZ_CP040244.1|WP_137995059.1|5943776_5944385_-|hypothetical-protein
MSKPQDGAIGRRAYFLFTLAVVALGWVIAAANTGISYLALGLDAIPIFAGFLGCCVFTIVLRFLHCAWWLAFLSLLPALLVLVGSVQYPIEAALDSRGVRESVLVTADENHRYTLVGRLGELKETLEYEEGERKYQVGDRVEVIHDPEGVVPLEEASDVDPGGRLFGLILGVVGWTGITLLAGRRGFVRRRAGRRPLLDDVS
>NZ_CP040244.1|WP_137993200.1|5943170_5943641_+|DUF4265-domain-containing-protein
MTEGRIKVWFRFVPREGWLPQDTEGLWATPVGPDTARVDNVPFLQDGVAQGDVVRYTTDAEGVHWAAARTTASGNCTLRVLPVPAGPLGPNAKAVHDRLSPFGLGGESFSTDFPLVALNVPADAPFARIKELLARGEDEGWWHWEMGCRTEAWEAA
>NZ_CP040244.1|WP_137993199.1|5940864_5942961_-|phospholipase-C,-phosphocholine-specific
MSQTSQMSRRRLLALGGGALGAAAAGSLLPPSLREAIAAGPPAGGMSAVKHVVILMQENRSFDHYFGTLRGVRGFGDRNAIELPSGKPVFEQPAALGRTVLPFPIRGAAETQQKDLQYIGDLDHSWSGGGKAWRGGWMDGWVSAKTAATMAYYDRQDLPLHYELADTFTICDAYHSSIHTSTSPNRNHLWSGWTGFEADGSRAVTNAAYAEGTHPGYSWPTYAERLEAAGRTWKTYTEWENFTDNNIEFFTTFKKIARKALATTGGHTFMESFYAAVRDTRDPNERARLLAALEDGVATLTDAERSLFERGLRRVETGKLADTFRADVAAGTLPEVSYLVPSAIDSEHPGSSSPIASATLVYKVLDALGAHPDVWRHTVVLINYDENDGFFDHVPPPVPPAGHTDERWKGLPTGLGIRVPLLVVSPWSVGGYVCSETFDHTSVVRFLEKLTGIEEPNITPWRRAVTGDLTSAFDFRRGHRQPEVDEPGPIPPFSGRWRPQPPLVQRMPLQEPGTRPARPLPYQPDASAAMGLGEITVALKNTGKASAHFALYPYAGEFDVPQHQDVRGTGQWTVPLTRDHYRFTITGPNGFRREFEGPAAGGAEVASCIDHHDRDLHLTVRNTTDAPLSFTVRPLGYVDADDLGDWTRTVTVKPGRSRTLVHSAADAHGWYDVEVTAPGGFRRRLMGHIENGRASVSG
>NZ_CP040244.1|WP_137993198.1|5938418_5940665_-|MMPL-family-transporter
MAAIARWCIKHRLVAVLLWLIALGGAVAGASVAGNAYSNDYDVPGTESGRATALLDKGFPGAGGDSDTIVWHTDQGSVRATGIEQRMTEMLDEVAELPGIASVASPYGANPAAHAQVSEDGHTAYAAVTFHEQADDIPEAQAQALVDTARAAAGDGVQVELGGSAVALTEAPGGHVAEAVGVVVAAVVLFLAFGSLAASALPIATALVSVGIAYSGIALLGHVMTVADFAPMLGLLIGLGVGIDYALFIVTRHRKGLKRGLSVPESAQIAVATTGRAVVFAGATVCIALLGMLILRLSFLNGVAIAASLTVVLTVAASVTLLPALLSLIGMRALSRRERRQLAEHGPQPEVPTGFAARWSAFVERHPKLLGGVAAAVMLLLALPTFSLHLGTSDQGNNPATATTRQAYDLLAEGFGPGVNGPLTLVAQIDGGDDRVALGQLPAALENTSGVESVSPITYNSAGDTAVLTVVPDSAPQSKATSDLVDRLRQDVLPSAEQGTSLDVHVGGVTASYDDFAEIIVGKLPLFVGVVIALGCLLLLLAFRSIGIPLKAALMNVAAVASAFGIVVAIFQWGWGSELLGLGSAGPIEPFLPVIMVSVLFGLSMDYQVFLVSRMYEEWLETGDNRRAVRVGLAETSRVINSAAVIMISVFLAFVLSGDRVIAMFGIALAAAVALDAFILRTLLVPALMHMLGGANWWLPRWLDRRLPRISIEPPECRAAADARAKIPTQRVTVPTGKENKDVRDIAG
>NZ_CP040244.1|WP_137993197.1|5937880_5938441_-|GNAT-family-N-acetyltransferase
MFAISLGDDGAELRPLEPWRAEEFLAHMDRGREFIGQHIALADAVTDLTSARAFLKAYAEKAATDTGRIYGIWTDGLLVGGVLFRTMDVNNGTAEAGCWLEPAAVGKGLVTRATKVIIDWAVEERGIHRVEWLVKSKNLPSIAVARRLGMTRDGVLRESYLYRGERHDMEIWSVLAREWKREWKAS
>NZ_CP040244.1|WP_137995060.1|5949287_5949686_+|hypothetical-protein
MEESLTALAAAGGGAVVAAMATDAWQVTRDGVVRLFRGRAEVEGRLEEDAALVAGAEDAQAADDARQALVPAWALRLRALLAEHPEYADELRALIRDAPGAQQSVQHNTAHDNARVFGVQHGNIVFHRNPDA
>NZ_CP040244.1|WP_137993207.1|5949682_5952439_+|tetratricopeptide-repeat-protein
MSVEQHVTALSGYAYGAIGADIHVFGDGSPVYLLHNWRPAPEPDPEWLRELPSRMLNSRFEVVPFTGREAELADLRAWRDQRARLAVRWMHAPGGQGKTRLAARFADETRQAGWRVVAATNGPGSVQPPPGSQDLTIDGHPGVLLVVDYADRWPLTHLTWLFSNALLHRPGLPTRILLLARTADAWPAVRASLANHQAGTSSHLLSELPDGARMYDAARDAFAVRYGVPAAVPGPPPPYGLTLALHMAALVAVDAHAHGRRPPTDLAGLTVYLLDREHLHWGTLFARGGPYATSPQAMNRAVFAAALTGSLDRSTGSAVVAGLDTGLAPGRVLDDHAFCYPATDPERGTVLEPLYPDRLAEDFLALTLPGHSADYPAMDWAAPTTAHLIGPHAERAVTFLAAAAQRWPHLAPRHLYPLLASDPGLALAAGGAALSALAALDDVPIRLLSAVEARFPVHRHVDLDAGMAAVTRRIVDELIALDGSPATRATGYHHLSTRLSHAGHIDRALEAAEQALAAQEELPEDVPALATSLARLGHCLALSGRPAQAVVVTQESAALFGRLAEAEPARWEGMHAGLLNDLGIWLAMTGRHREALAVGERSVAAWRGIVAADPAHEEHLAGALHSLGNYLSDLGRWPEAADATREAVALWLRLAERDPAAHEPDLAGSLTNLANHLAAQGRQADALALSLQAVTVQRSLARANAAAHEPTLALGLTSLGADLAAAGRLPEAVDVTAEAVAIRRRLAAGNLAAHSPGLAQSLSNLANYLLGVGRPAEALAAAEEAVSLRERLYAEHPDPHRADLAQSLSNLGMCLEEAGRRPEGLAATRRAVELYRTAFDAGPAAYTFDLARVLNNLGRFLALEGRWEEALVPVGEAITLAERSAPANPPVYAELLGHLRQTRDGCLTMLRRGRRPGS
>NZ_CP040244.1|WP_137993208.1|5952480_5953992_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MTVTELLSYDAALAEYDPVMGLEVHVELGTKTKMFCGCSTELGADANSQTCPTCLGLPGSLPVVNAIGVESAIKIGLALNCEIAEWCRFARKNYFYPDMPKNFQTSQYDEPIAFNGYLDVQLEDGEIFRVEIERAHMEEDTGKSTHIGGATGRIHGASHSLLDYNRAGIPLIEIVTKPIEGAGERAPEVAKAYVAELRELIRALDVSEARMDKGQMRCDVNLSLRRHGAPAFGTRSETKNVNSLRSVERACRFEIQRHAAVLSAGGTIVQETRHFHEDDGTTTSGRIKDNAEDYRYFPEPDLVPVAPSREWVEELRATLPELPRVRRNRLREEWGVSEHDMQSILNAGAVDLIVATTDAGAPADQARKWWMGELARSANESGVALDELAITPAQVARVTELVAAGELTDKLARQVIEGVLAGEGGPDEVVEKRGLKVVSDEGALGTAVDEAIASNAGIADKIRGGKVAAVGALVGAVMKATRGQADAARVKELILERLGVSEG
>NZ_CP040244.1|WP_030492500.1|5954007_5954241_-|hypothetical-protein
MAKKAKNFKKSKTGIYVSLATTAFGAVSVAKQAKLARNDHDMLRLIDSAVSAAAIVTGLAILYRELKRLGDDDVLLG
>NZ_CP040244.1|WP_137993209.1|5954246_5955752_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MTDTNVTIIKLTAAEIAGRIASGELTAVEVTEAHLARIEAVDEKVHAFLHVDREGALAQARAVDEKRARGEKLGPLAGVPLALKDIFTTVGVPTTVGSKILEGWIPPYDATLVKNLKAADVVILGKTNMDEFAMGSSTENSAYGPTGNPWDLTRIPGGSGGGSSAALAAYEAPLAIGTDTGGSIRQPAAVTGTVGVKPTYGGVSRFGMVAFSSSLDQGGPCARTVLDAALLHEAIAGHDPLDSTSIDAPVPPVVEAARNGSVAGMRVGVVKQFRGEGYQAGVVQRFDESVELLKSLGAEIVELDCPTFDLALSAYYLIAPSECSSNLARFDAMRYGLRVGDDGTRSAEDVTAMTREAGFGDEVKRRIILGTYALSSGYYDAYYGSAQKVRTLITREFEQAFEQVDVIVSPTTPTTAFPIGERADDPMAMYLADLCTIPTNLAGNAAMSLPCGLAPEDGLPVGLQIIAPAMKDDRLYKVGAAVEAAFVEKWGHPLLEEAPSL
>NZ_CP040244.1|WP_015036350.1|5955757_5956054_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MPGITREEVAHLARLARLELKGEELDHFAGQLDDIIGAVARVSEVADQDVPPTSHPLPLTNVMRADEVRPSLTPEQALSGAPAQEQQRFKVPQILGED
>NZ_CP040244.1|WP_137993210.1|5956184_5958332_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MKPTESAAAPVSRPRGRAACVGISSGLPGAVVGIAAVVLATGFFRALSTGHGLFPGGAAGWSLAVLTGLIVGHLVALGRDRWWGGTGSGAALTLAVLLLYGWVPAGLVSMAVVVLVGAARRHRWRQGLLHGAVDVLGIGTAALVLAVFGDVPTVERPWQPPDWGIADIPEVALAAVAYLVVTRLLLWYVLSPRGGGLPTIARTALLRQGLVAVALLGIAPLICVVAVSQPVLLPLFAVPLIALDSTLWIARARAEEQLRDPLTGLPNRQWLLERAWTALEEAEGGGARSALVLIDLDRFRSVNDTLGHLAGDRLLLQIAERLKLALPRGAEAARLGGDEFAVLLPTADSTTSAQRVARHLVAELSSPLDLDGLTLVLEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLRRALDAGEVELHYQPKVRFDGQVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTEYVLETALAQVARWRAQGLNVPVAVNVSPRDVHTPGFAGAVAARLARHGVPAGALQLEITEHVLLEDPQRAADTMAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLAVDAEDAEIVRCTLDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPGETTAWLRARGEHGWRRPSEEAAEAAEAARAASIVDVDQPSGHVVQ
>NZ_CP040244.1|WP_137993211.1|5958573_5960754_-|NAD-dependent-DNA-ligase-LigA
MAVEQGALPAGAREQHAELAEQVEEHRFRYYVKDQPVVSDAEFDRLLRALEELEEQFPELRTPDSPTQKVAGQYETEFTSVEHRERMLSLDNAFDDLELAAWAERVARDVGTSDHHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPERLRGERIPDLVEIRGEVYFPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMIVHGIGARDGLDISRLSEAYELLREWGLPTARHNKVVDSLEGVREFIAYFGEHRHSVEHEIDGVVVKLDEIPLQGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVEFATLHNQEVVKTKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTEREFVMPAECPECGTPLRAMKEGDIDLRCPNARTCPAQLRERLFYLAGRECLDIENFGAVAAAALTRPLEPAEPPLADEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVVTVFANQKGEPKKNALAMLENIAAAKERPLARFINGLSIRHVGPVAAQALAREFRSLDRIEQATQEELAAVDGVGGIIAAAVKDWFAEDWHREIVRKWREAGVRLEDEGAGEDQGPRPLEGLTVVVTGTLQNFTRDGAKESLQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQLKVPVLDEDGFAVLLEQGAEAAREAAVPAEG
>NZ_CP040244.1|WP_137995061.1|5960787_5961783_-|methionine-synthase
MNDFPWGPATGVGSMPGGDAREAAKTVAGSFEDFPFLAELPARGPGADMIGRTIGLLVEMYAHVEPSGWRVSDRPGRDTRRARSWLREDLDALEEFTQGYEGPLKVQAVGPWTLAAALELRGGEAALGDPGACRDLVGSLAEGLRDHLAGLRRRVPGARLVLQLDEPSLTAVLRGHVRTASGYRTHRAVDRQVVESALREVIAVHDGPVVVHSCAPDVPFALLRRAGVAGVSFDFGLLTERDEEPIGEAVEAGTKLFVGVVPSTDAALSDPGGSVMGVRTLWRRLGLNPGTLAESVVVTPTCGLAGASPAYARTALAHCARAARSLADNPE
>NZ_CP040244.1|WP_137993212.1|5961806_5962361_-|AAA-family-ATPase
MTGGTQGTVVQAGHIEHLVVHQAPPAPDEVTVAPPWRRRGTPLRGRDELLARLRAATGTQVLYGLGGVGKTSLALELAGSFAAEGAPVWWVAAQDGARLAGGLRAVARRVGLGEEELATGQTADLLWERLAALAGPWLLVLDPAAAHAELTAVLDARTRVLGPGHPVTVATREAVERTGRTLPE

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Crispr_ID: NZ_CP040244_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_12

6084772-6084950

Orphan

Consensus_repeat	Method
CCGAGCGGCTGCGCACGGAGGCCGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040244_12

>merge|NZ_CP040244|12|6084772-6084950|CRISPRCasFinder
CCGAGGAGCTGCTGACCAAGGCCCGTGCCGACGCCGAGGAGCTGCGCGCGAGCGCGGGCGCCGAGGGCGAGCGGGTCCGCTCCGAGGCCATGGAGCGCGCGCAGACGCTGCGCACCCAGGCCGAGGAGACCCTGGAGCGCACCCGCGCCGAGGCCGAGCGGATGCGGGCCGAGGCCGAG

>NZ_CP040244|12|9|6084772-6084950|CRISPRCasFinder
CCGAGGAGCTGCTGACCAAGGCCCG	TGCCGACGCCGAGGAGCTGCGCGCGAGCGCGGGCGCCGAGG
GCGAGCGGGTCCGCTCCGAGGCCAT	GGAGCGCGCGCAGACGCTGCGCACCCAGGCCGAGGAGACCCTGGAGCGCACCCGCGCCGAGG
CCGAGCGGATGCGGGCCGAGGCCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137993306.1\|6094020_6095055_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_CP040244.1\|WP_137993291.1\|6077140_6077488_-\|DUF3817-domain-containing-protein	unknown	unknown	gnl\|CDD\|378962
NZ_CP040244.1\|WP_137993292.1\|6077606_6078245_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP040244.1\|WP_137993307.1\|6095851_6096532_+\|endonuclease-NucS	unknown	unknown	gnl\|CDD\|235114
NZ_CP040244.1\|WP_017236120.1\|6095238_6095631_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993294.1\|6078891_6079677_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|224924
NZ_CP040244.1\|WP_137993308.1\|6096589_6099139_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|282904
NZ_CP040244.1\|WP_137993293.1\|6078244_6078895_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP040244.1\|WP_137993301.1\|6088681_6089656_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP040244.1\|WP_137993295.1\|6079802_6080279_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP040244.1\|WP_137993302.1\|6089659_6090439_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NZ_CP040244.1\|WP_137993289.1\|6074705_6076631_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133043
NZ_CP040244.1\|WP_137993300.1\|6087668_6088607_+\|cellulose-binding-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP040244.1\|WP_137993297.1\|6081371_6082574_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP040244.1\|WP_137993298.1\|6082711_6083152_+\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|213772
NZ_CP040244.1\|WP_137993290.1\|6076850_6077144_-\|MTH1187-family-thiamine-binding-protein	unknown	unknown	gnl\|CDD\|376658
NZ_CP040244.1\|WP_137993305.1\|6093494_6093821_-\|ATP/GTP-binding-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993303.1\|6091492_6092611_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP040244.1\|WP_137993296.1\|6080389_6081346_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|224617
NZ_CP040244.1\|WP_137993304.1\|6092607_6093417_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137993306.1\|6094020_6095055_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	2.94676e-51
NZ_CP040244.1\|WP_137993291.1\|6077140_6077488_-\|DUF3817-domain-containing-protein	gnl\|CDD\|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	4.61733e-26
NZ_CP040244.1\|WP_137993292.1\|6077606_6078245_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	8.84008e-36
NZ_CP040244.1\|WP_137993307.1\|6095851_6096532_+\|endonuclease-NucS	gnl\|CDD\|235114	PRK03298, PRK03298, endonuclease NucS.	3.50061e-178
NZ_CP040244.1\|WP_137993294.1\|6078891_6079677_+\|AIM24-family-protein	gnl\|CDD\|224924	COG2013, COG2013, Uncharacterized conserved protein [Function unknown].	2.68133e-06
NZ_CP040244.1\|WP_137993308.1\|6096589_6099139_-\|ATP-binding-protein	gnl\|CDD\|282904	pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1). This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.	7.14162e-08
NZ_CP040244.1\|WP_137993293.1\|6078244_6078895_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	8.55706e-41
NZ_CP040244.1\|WP_137993301.1\|6088681_6089656_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	9.90123e-92
NZ_CP040244.1\|WP_137993295.1\|6079802_6080279_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.76466e-15
NZ_CP040244.1\|WP_137993302.1\|6089659_6090439_+\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	0.00012189
NZ_CP040244.1\|WP_137993289.1\|6074705_6076631_-\|glycosyltransferase	gnl\|CDD\|133043	cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.	2.8825e-75
NZ_CP040244.1\|WP_137993300.1\|6087668_6088607_+\|cellulose-binding-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	4.33379e-06
NZ_CP040244.1\|WP_137993297.1\|6081371_6082574_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP040244.1\|WP_137993298.1\|6082711_6083152_+\|methylmalonyl-CoA-epimerase	gnl\|CDD\|213772	TIGR03081, Methylmalonyl-CoA_epimerase_mitochondrial, methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.	3.58419e-50
NZ_CP040244.1\|WP_137993290.1\|6076850_6077144_-\|MTH1187-family-thiamine-binding-protein	gnl\|CDD\|376658	pfam01910, Thiamine_BP, Thiamine-binding protein. The crystal structure of two of these members shows that this domain has a ferredoxin like fold and is likely to exists as at least homodimers. Sulphate ions are are located at the dimer interfaces, which are thought to confer additional stability. Although the function of this domain remains to be identified, its structure suggests a role in protein-protein interactions possibly regulated by the binding of small-molecule ligands. Solution of the structure of the hyperthermophilic anaerobic Thermotoga maritima sequence, UniProtKB:Q9WYV6, shows that this has a beta-alpha-beta-beta-alpha-beta ferredoxin-like fold and assembles as a homotetramer. It was possible to identify a pocket in each monmer that bound an unidentified ligand. It was also found that it bound charged thiamine though not hydroxymethyl pyrimidine. It is proposed that it is transporting charged thiamine around the cytoplasm. Under oxidative conditions this bacterium is under stress, and the transcriiptional unit within which this protein is expressed is up-regulated in these conditions, suggesting that the chelation of cytoplasmic thaimine is part of the response mechanism to such oxidatvie stress, which is mediated by this family.	2.26497e-30
NZ_CP040244.1\|WP_137993303.1\|6091492_6092611_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.37921e-95
NZ_CP040244.1\|WP_137993296.1\|6080389_6081346_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|224617	COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism].	1.04795e-120
NZ_CP040244.1\|WP_137993304.1\|6092607_6093417_+\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	0.000579168

>NZ_CP040244.1|WP_137993298.1|6082711_6083152_+|methylmalonyl-CoA-epimerase
MLTRIDHIGIACFDLDKTVEFYRATYGFEVFHSEVNEEQGVREAMLKINETSDGGASYLQLLEPTREDSAVGKWLAKNGEGVHHIAFGTADVDGDAEAIRSKGVRVLYDAPRVGSMGSRITFLHPKDCHGVLTELVTSADPSSAEH
>NZ_CP040244.1|WP_137993297.1|6081371_6082574_-|acetyl-CoA-C-acetyltransferase
MSGTTGTTSVIVAGARTPMGRLLGSLKSFSGADLGGFAIKAALDRAGIGGDQVQYVIMGQVLQAGAGQIPARQAAVKAGIPMNVPALTINKVCLSGLDAIALADQLIRAGEFDIVVAGGQESMTNAPHLLPKSREGFKYGAIEMLDCMAYDGLTDSFEGIAMGESTEKHNTRLGIKRPEQDEIAAQSHQRAAAAQKNGIFEAEITPVEIPQRKGEPVVFSKDEGIRAETTVESLGKLRPAFAKDGTITAGTSSQISDGAAAVVVMSKAKAEELGLEWIAEIGAHGNVAGPDNSLQSQPSNAIQHALKKEGLSAEDLDLIEINEAFAAVAVQSMKDLGVTPEKVNVNGGAIALGHPIGMSGARVVLHLALELKRRGGGIGAAALCGGGGQGDALIVRVPGK
>NZ_CP040244.1|WP_137993296.1|6080389_6081346_-|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MVDVPELVAQAREGRPRAVARLISLVEGASPQLREVMAALAPLTGGAYVVGLTGSPGVGKSTSTSALVAAYRRAGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVEIASQADTSVVLLAPGMGDGIQAAKAGILEIGDVYVVNKADRDGADATARELNHMLGLGEARGPGDWRPPIVKTVAARGEGVDEVVEALEKHRAWMEEHGVLAERRVRRAAGEVETIAVTALRERIGDLHGDRRLDALAERIVAGELDPYAASDELITSLTGN
>NZ_CP040244.1|WP_137993295.1|6079802_6080279_+|MarR-family-transcriptional-regulator
METETATPWLTDAEQCAWRTYLDVNRMLTYQLEKDLQPFGLTINDYEILVNLSESAERRLRMSDLAMATLQSKSRLSHQITRMENAGLVRRENCESDRRGLYAVLTDHGMETMRKVAPHHVESVRRHFIDQLSSEALGDLHESLKPVAEQLRGRRGKP
>NZ_CP040244.1|WP_137993294.1|6078891_6079677_+|AIM24-family-protein
MSTPVIFDPMTLPSDDNVNPYTFCVELKGSQWFLQKGKMIAYYGRIDFNGIGHGRLDRLVRTSFHSPLHASDWVVAEGSGKMLLADRAFDVNSYDLDEGNLTIRSGNLLAYQPTLALKQSIVPGFVTLIGTGKFVAASNGPVVFMEPPMRVDPQALVGWADCPSPCHHYDHGYMTGVMGGVRALTGIGGTSGEEHQFEFVGAGTVLLQSTEMLMPERATGQPPAQAGVPGGHGAHGSGQAMPGSVPRLPGQLGDLQRRFGL
>NZ_CP040244.1|WP_137993293.1|6078244_6078895_+|AIM24-family-protein
MPFREINSKMVEATVVPGQRMFSQRGAMLAYRGDVTFTPNMAGGQGGVMSMIGRRVAGEATPLMTVEGNGTVMFGHGGHHIQVIQLTGDTLYVEADRLLAFDGTLEQGTMFMGSQGGVMGMVRGQVTGQGLFTTTLKGHGAVAVMAHGGVIELPITPGRAVHVDPQAYVAHHGDVRNKLSTALGWRDMVGRGSGEAFQLELSGSGAVYVQASEEKL
>NZ_CP040244.1|WP_137993292.1|6077606_6078245_+|AIM24-family-protein
MATFRLQGSKVLAVSMTGDAVKAKNGSMVAYDGQMAFKKMSGGGEGLRGMVTRRLTGEQMEVMEVKGQGTCWFADRASEINLVSLHGDKLYVEASNLLCTDAGLRTGTSFTGLRGGATGNGLFTTTVEGTGQAAIMSDGPAVVLRVTPQYPLSVDPGAYIAHQGNLQQSFQSGVTFRTFMGEGGGEAFQIRFEGDGLVYVQPSERNTIGGDV
>NZ_CP040244.1|WP_137993291.1|6077140_6077488_-|DUF3817-domain-containing-protein
MDIKTASSLHRLRLVSAPEAVSFLLLLVCSVLKRTTDFNAVPVMGAIHGILFILYVLFWLDAWNRTKWQFKTAALYFVLSVLPLGGFFAERKLKREAENAVDAAIAARREGTVSA
>NZ_CP040244.1|WP_137993290.1|6076850_6077144_-|MTH1187-family-thiamine-binding-protein
MIVAFSVTPLGVGEDVGEYVADAVRVVRESGLPNRTDAMFTSVEGEWDEVMDVVKRAVAAVEARAPRVSLVLKADVRPGVTDGLTSKVETVERHLSA
>NZ_CP040244.1|WP_137993289.1|6074705_6076631_-|glycosyltransferase
MWISTRSTTAGGTVRPRGYDYDTYSRLAGPLTEPDTAPYTVRYRSLLSKEPHRIRAVVLMGLAPVLSALLLVYLVWPSHWTVREGDDRWLVRFDTVMLVSIGLICFFMLVNVTSIAHATLVARDPIPVYPEKGTRVAFLTTYVPGKEPLTMVRATLEGAVRLRHCGPLDVWLLDEGDDDHAKALCAELGVKHFTRAGVPEWNRKKGVHKARTKHGNYNAWLAMHGDAYDFFASVDTDHIPLPNFLERMLGFFRDPDVAFVVGPQVYGNYTSPVTKAAESQQFLFHALIQRAGNRYHAPMFVGTNNVVRVRAVKQVGGLYDSITEDMATGFELHRRKNPRTGHFWRSVYTPDVLAVGEGPASWTDFFTQQLRWSRGTYETLIKQYWKTPFRVPPGRFLNYTLMLVYYPMTAVNWFLGILSCVLFLWLGASGTQVASSVWLMIYSDAVALQIGLYLWNRRHNVSPHEPEGSGGLAGMGMSALSAPIYLRSLGSAVLRTRGRFVVTPKGGAASPDRLLTFRIHLYWAVILIASLAASVFFGHTHAAMRTWAVLALVIALAPVAIWAWTTLHDRGRQRARDRIRARIRARGRAHARSGVGAGAGAGVGVGVPETEAAALVTKTTTAAPSATGPTTTAAPTTTGGN
>NZ_CP040244.1|WP_137993300.1|6087668_6088607_+|cellulose-binding-protein
MSDTSSPFGFELVRRGYDRGQVDDRITKLVADRDSALTRITSLEKRIEELHLETQNAQAQVSDAEPSYAGLGARVEKILRLAEEEAKDLREEARRAAEQHRELAESAAQQVRNDAESFAADRKAKAEDEGVRIVEKAQGEANSLRAEAQKDAQSKREEADALFEETRAKAAQAAADFETNLAKRREQSERDLASRQAKAEKRLAEIEHRAEQLRLEAEKLRTDAERRARQTVETAQRQAEDIVADANAKADRIRSESERELAALTNRRDSINAQLTNVREMLATLTGAAVAAAGSPIDDEPATRGVPAQQSR
>NZ_CP040244.1|WP_137993301.1|6088681_6089656_+|ATP-binding-cassette-domain-containing-protein
MIELEGLTKRYGTKTAVDHLSFQVRPGVVTGFLGPNGAGKSTTMRMMLDLDNPTSGTVRIDGKHYRDLQEPLKYIGALLDAKAMHGGRSAYNNLLCLAQSNRIPASRVGEVLDLVGLTPVARKKSKGFSLGMGQRLGIASALLGDPEILMFDEPVNGLDPEGIHWIRNLMKALAAEGRTIFVSSHLMSEMALTADHLIVIGQGKLLADTSMADFIHQNSRSYVRLRSPQQEQLRDLLHANGFTPVEAGNGTLEVDGATTEKLGELAAENRLVLHELSAQRASLEEAFMQMTAGAVEYHAHGTDVHGAQAPPAAGPRWGETTKGA
>NZ_CP040244.1|WP_137993302.1|6089659_6090439_+|ABC-transporter-permease-subunit
MAAVSAVLQSEWTKIRTVSSTIWTLASALLVTVAMSAALCALLSSTFEDLSPAEQATFDPTFISFSGMVLGQLAMVVFGVLVIGTEYSSGMIRTSLAAVPQRATFLFSKIAVAGALALLVGLATSFLSFFLGQALLGDHRTTLGADNVLRAVVGGGLYMGLIALFSMGVATMLRSSMLSLGILVPFFFLVSQILSAVPKAKDVARYFPDQAGSKIMQVVPDAMNSEKAPYGPWAGLGIMLIWVAAALLGGYLVMKKRDA
>NZ_CP040244.1|WP_137993303.1|6091492_6092611_+|ATP-binding-cassette-domain-containing-protein
MIEAVGLTKRYGAKTAVYNLSFQVRPGTVTGFLGPNGSGKSTTMRMILGLDRPTSGHVTIGGHPFRQLPNAPRQVGALLDAKAVHGGRSARSHLLSLAQLAGIPAQRVDEVLGVVGLQDVAKRRSKGFSLGMGQRLGIAAALLGDPQVLLFDEPVNGLDPEGILWVRNLMKKLASEGRTVFVSSHLMSEMALTADHLIVIGRGQLMADMSVKDFISANSADFARVRTPQTEPQQREKLTAALTEAGGQVMSEPDGALRVTGLPLPRISDLAHDADVRLWELSPHQASLEEAYMRMTQGAVDYRSTEDQLAHLQQPQPHPHAHQAGYAPPAQPEIPEVPQQGWYAPPPPGQNPYAAPQQSEPAQNATNVEDAR
>NZ_CP040244.1|WP_137993304.1|6092607_6093417_+|ABC-transporter-permease-subunit
MTTPYSYVSPIPVRRAHLGDALASEWTKIRSVRSTMWTLGVMVLLMLGIGLGVAAIVAGSEVSTEGESALGLGFFGVLLGSICVITLGVLTVASEYGTGMIRTTLTACPSRGRVLTAKAIVFFLLVFTVTTLTATVVALAQVAMVDAAEPTGAEWLRATVGVGLFIALLGLLSLAVGAMIRHSAGAITVMIGVLLLPLVAAMFMFSESLAKVQEWLLDYAIPSQLIALYAGKSAMTQSGPSGWDPVWILLIIAAAAMGGAYALLNSRDV
>NZ_CP040244.1|WP_137993305.1|6093494_6093821_-|ATP/GTP-binding-protein
MSPRRNRPKGGENPDPQGESADRYGGSQRSETWQGEEWLVRHVAGASAPGKRYRCPGCDQEIPGGAPHVVAWPEYGGVDDRRHWHKACWNAKDRRTSRVQRSRNAPRY
>NZ_CP040244.1|WP_137993306.1|6094020_6095055_+|LLM-class-flavin-dependent-oxidoreductase
MRVGTFVLAAQFPGQGQGEALHRAVRTAEVTEESGLDSVWLAEHHFVPYGVCPSAVTLAALLLGRTRRIRVGTAVSVLPAVHPVALGEQAALLHLTSGGRFTLGVGRGGPWIDLEVFGAGLKAYEQGFPESLDLLLRWLTEPRVAAEGERFAFREVAVVPRPDELIGGDAAPEVLVACTSSKSVRLAAERGLPMLLGMHCGDEEKAEMVAAWERCAREAGRTPDEIARIGAGHVSAGVAQLADRGADAAEALVKAMPGWLKQGLDAHVTVDGRHRAMRDPVAYTELLCGLHPVGTPRLAADRLAATSERTGITRFALLAEGTGDLAATEENVRRLGAEVLPLLT
>NZ_CP040244.1|WP_017236120.1|6095238_6095631_-|hypothetical-protein
MSLDVSPALLEQAERGEVDEADFVDCVRTSLPYAWEMISSLVAQLKVDGGEFADNQTPPPNEQARGQLLRALASDAIRGALQRHFGVRLAFQNCHRVAVFPLDPAVDERLARFTSVRGQLLNQSPELRDC
>NZ_CP040244.1|WP_137993307.1|6095851_6096532_+|endonuclease-NucS
MPTMRLVIARCSVDYAGRLTAHLPSAPRLILVKADGSVSIHADDRAYKPLNWMSPPCTLKEGADGEAGIWTVVNKAGEKLIITMEEILHDSSHELGVDPGLIKDGVEAHLQELLADRIETLGEGHTLIRREYPTAIGPVDILCRDADGATIAVEIKRRGEIDGVEQLTRYLELLNRDPHLAPVKGVFAAQEIKPQARVLATDRGIDCVVLDYDALRGIEDDKLRLF
>NZ_CP040244.1|WP_137993308.1|6096589_6099139_-|ATP-binding-protein
MDPMNRGPEEYGHDTEGDDAREGRGAPAPERGPSTAARARIARVVSGDLLLTVNPVDGSEIEACPPGEQPAPPRRRTAEERAEAARAAAPPVPPGPAAPPLPLLERQEEHERLVQLLARGRSVRVTGPAGSGRTALLDAVAADCAGLAPDGVVRLSGYHRTPTELLYDLFTTVQHAPDLRPDRPALLGLVHDIGAIVVVDDLEFGGTTLDELLAAAPECAFLLAATPDVPAPSPDAHLEEVSLAGLGRAAALALLESAVDRPLTDDEANWAGDLWFESEGLPLRFVQAGALLRQRDRLRVIPEEFDAFGTKEQEQEDAPTEFDAFGALDDAFGPAATAPAAPTTPTAPEASADVELREIPLPSLGEGAAPAALLASRLSHSAQDTLRFTVALGGEVPHQAHLPALVGDTHADAAVGELMACGLLSPVGARYRLAAGVLTQLLAQAYDEGAAARAHTVAQHYAWWAGHPSVTPTRAAAEADALLAALAALVPGSDPEHPATAVLLARSAAPAFAAGLHWGAWERALRAGQEAARLAGEVAEEAYFHHELGILALCAGNLQRARAELEASIGMRGVLADKRGTVAGRRALALVADRAGGAPSEDHAPAGDEQPTTRVEEPVSPPRGIPRAVVPASARTAPIPAFPDFADEGPTLITRPDAQPGGDGTKRGGRFGVIAGARRNLVAVGTGALLAAVLGTVVTIGATSGNAEDPGSNRVTSDRTASEDGVDDGLDADEPTEDSTSRPSESASPTPSGSPTSGTPSASGTPSSSSSPSGTPSTTAPTTVPPAPTTTAPRPTISPTTKPTPTKSPTPSTTSPTTPPTTPSTTPSTTTPPETTQSQDNPDNTGTPA

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Crispr_ID: NZ_CP040244_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_13

6085057-6085474

Orphan

Consensus_repeat	Method
CCGAGCGGCTGCGCACGGAGGCCGC	CRISPRCasFinder

6 spacers

The CRISPR arrays of NZ_CP040244_13

>merge|NZ_CP040244|13|6085057-6085474|CRISPRCasFinder
TGACCCGGCTGCACACCGAGGCCGAGTCGCGGGTCGAGAGCGCCGAGCAGCAGCTCACGGACGCCCGCGCCGAGAGCGAGCGGCTGCGGCGCGAGGCCGCGGAGGAGACCGAGCGGCTGCGCACGGAGGCCGCCGAGCGGATCCGTACGCTCCAGGCCCAGGCCGAGCAGGAGGCCGAGCGGCTGCGGACGGAGGCCGCGTCCGACGCGTCCACCGCGCGCGCCGATGCCGAGGCCGCGGCCGTACGGCTGCGGACGGAGGCGCAGACGGAGGCCGAGCGACTGAAGTCGGAGGCCCAGGAGACCGCGGACCGGGTACGGGCCGAGGCCGCCGCCGCCGCCGAGCGGGTGGCCGCCGAGGCAGCCGAGGCGCTGGCCGCCGCGCAGGAGGAGGCCAACCGGCGCCGCCGGGAGGCCGA

>NZ_CP040244|13|10|6085057-6085474|CRISPRCasFinder
TGACCCGGCTGCACACCGAGGCCGA	GTCGCGGGTCGAGAGCG
CCGAGCAGCAGCTCACGGACGCCCG	CGCCGAGAGCGAGCGGCTGCGGCGCGAGGCCGCGGAGGAGA
CCGAGCGGCTGCGCACGGAGGCCGC	CGAGCGGATCCGTACGCTCCAGGCCCAGGCCGAGCAGGAGG
CCGAGCGGCTGCGGACGGAGGCCGC	GTCCGACGCGTCCACCGCGCGCGCCGATGCCGAGGCCGCGG
CCGTACGGCTGCGGACGGAGGCGCA	GACGGAGGCCGAGCGACTGAAGTCGGAGGCCCAGGAGACCG
CGGACCGGGTACGGGCCGAGGCCGC	CGCCGCCGCCGAGCGGGTGGCCGCCGAGGCAGCCGAGGCGCTGGCCGCCGCGCAGGAGGAGG
CCAACCGGCGCCGCCGGGAGGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137993306.1\|6094020_6095055_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_CP040244.1\|WP_137993291.1\|6077140_6077488_-\|DUF3817-domain-containing-protein	unknown	unknown	gnl\|CDD\|378962
NZ_CP040244.1\|WP_137993292.1\|6077606_6078245_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP040244.1\|WP_137993307.1\|6095851_6096532_+\|endonuclease-NucS	unknown	unknown	gnl\|CDD\|235114
NZ_CP040244.1\|WP_017236120.1\|6095238_6095631_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993294.1\|6078891_6079677_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|224924
NZ_CP040244.1\|WP_137993308.1\|6096589_6099139_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|282904
NZ_CP040244.1\|WP_137993293.1\|6078244_6078895_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP040244.1\|WP_137993301.1\|6088681_6089656_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP040244.1\|WP_137993295.1\|6079802_6080279_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP040244.1\|WP_137993302.1\|6089659_6090439_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NZ_CP040244.1\|WP_137993289.1\|6074705_6076631_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133043
NZ_CP040244.1\|WP_137993300.1\|6087668_6088607_+\|cellulose-binding-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP040244.1\|WP_137993297.1\|6081371_6082574_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP040244.1\|WP_137993298.1\|6082711_6083152_+\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|213772
NZ_CP040244.1\|WP_137993290.1\|6076850_6077144_-\|MTH1187-family-thiamine-binding-protein	unknown	unknown	gnl\|CDD\|376658
NZ_CP040244.1\|WP_137993305.1\|6093494_6093821_-\|ATP/GTP-binding-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993303.1\|6091492_6092611_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP040244.1\|WP_137993296.1\|6080389_6081346_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|224617
NZ_CP040244.1\|WP_137993304.1\|6092607_6093417_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137993306.1\|6094020_6095055_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	2.94676e-51
NZ_CP040244.1\|WP_137993291.1\|6077140_6077488_-\|DUF3817-domain-containing-protein	gnl\|CDD\|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	4.61733e-26
NZ_CP040244.1\|WP_137993292.1\|6077606_6078245_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	8.84008e-36
NZ_CP040244.1\|WP_137993307.1\|6095851_6096532_+\|endonuclease-NucS	gnl\|CDD\|235114	PRK03298, PRK03298, endonuclease NucS.	3.50061e-178
NZ_CP040244.1\|WP_137993294.1\|6078891_6079677_+\|AIM24-family-protein	gnl\|CDD\|224924	COG2013, COG2013, Uncharacterized conserved protein [Function unknown].	2.68133e-06
NZ_CP040244.1\|WP_137993308.1\|6096589_6099139_-\|ATP-binding-protein	gnl\|CDD\|282904	pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1). This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.	7.14162e-08
NZ_CP040244.1\|WP_137993293.1\|6078244_6078895_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	8.55706e-41
NZ_CP040244.1\|WP_137993301.1\|6088681_6089656_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	9.90123e-92
NZ_CP040244.1\|WP_137993295.1\|6079802_6080279_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.76466e-15
NZ_CP040244.1\|WP_137993302.1\|6089659_6090439_+\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	0.00012189
NZ_CP040244.1\|WP_137993289.1\|6074705_6076631_-\|glycosyltransferase	gnl\|CDD\|133043	cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.	2.8825e-75
NZ_CP040244.1\|WP_137993300.1\|6087668_6088607_+\|cellulose-binding-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	4.33379e-06
NZ_CP040244.1\|WP_137993297.1\|6081371_6082574_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP040244.1\|WP_137993298.1\|6082711_6083152_+\|methylmalonyl-CoA-epimerase	gnl\|CDD\|213772	TIGR03081, Methylmalonyl-CoA_epimerase_mitochondrial, methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.	3.58419e-50
NZ_CP040244.1\|WP_137993290.1\|6076850_6077144_-\|MTH1187-family-thiamine-binding-protein	gnl\|CDD\|376658	pfam01910, Thiamine_BP, Thiamine-binding protein. The crystal structure of two of these members shows that this domain has a ferredoxin like fold and is likely to exists as at least homodimers. Sulphate ions are are located at the dimer interfaces, which are thought to confer additional stability. Although the function of this domain remains to be identified, its structure suggests a role in protein-protein interactions possibly regulated by the binding of small-molecule ligands. Solution of the structure of the hyperthermophilic anaerobic Thermotoga maritima sequence, UniProtKB:Q9WYV6, shows that this has a beta-alpha-beta-beta-alpha-beta ferredoxin-like fold and assembles as a homotetramer. It was possible to identify a pocket in each monmer that bound an unidentified ligand. It was also found that it bound charged thiamine though not hydroxymethyl pyrimidine. It is proposed that it is transporting charged thiamine around the cytoplasm. Under oxidative conditions this bacterium is under stress, and the transcriiptional unit within which this protein is expressed is up-regulated in these conditions, suggesting that the chelation of cytoplasmic thaimine is part of the response mechanism to such oxidatvie stress, which is mediated by this family.	2.26497e-30
NZ_CP040244.1\|WP_137993303.1\|6091492_6092611_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.37921e-95
NZ_CP040244.1\|WP_137993296.1\|6080389_6081346_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|224617	COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism].	1.04795e-120
NZ_CP040244.1\|WP_137993304.1\|6092607_6093417_+\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	0.000579168

>NZ_CP040244.1|WP_137993298.1|6082711_6083152_+|methylmalonyl-CoA-epimerase
MLTRIDHIGIACFDLDKTVEFYRATYGFEVFHSEVNEEQGVREAMLKINETSDGGASYLQLLEPTREDSAVGKWLAKNGEGVHHIAFGTADVDGDAEAIRSKGVRVLYDAPRVGSMGSRITFLHPKDCHGVLTELVTSADPSSAEH
>NZ_CP040244.1|WP_137993297.1|6081371_6082574_-|acetyl-CoA-C-acetyltransferase
MSGTTGTTSVIVAGARTPMGRLLGSLKSFSGADLGGFAIKAALDRAGIGGDQVQYVIMGQVLQAGAGQIPARQAAVKAGIPMNVPALTINKVCLSGLDAIALADQLIRAGEFDIVVAGGQESMTNAPHLLPKSREGFKYGAIEMLDCMAYDGLTDSFEGIAMGESTEKHNTRLGIKRPEQDEIAAQSHQRAAAAQKNGIFEAEITPVEIPQRKGEPVVFSKDEGIRAETTVESLGKLRPAFAKDGTITAGTSSQISDGAAAVVVMSKAKAEELGLEWIAEIGAHGNVAGPDNSLQSQPSNAIQHALKKEGLSAEDLDLIEINEAFAAVAVQSMKDLGVTPEKVNVNGGAIALGHPIGMSGARVVLHLALELKRRGGGIGAAALCGGGGQGDALIVRVPGK
>NZ_CP040244.1|WP_137993296.1|6080389_6081346_-|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MVDVPELVAQAREGRPRAVARLISLVEGASPQLREVMAALAPLTGGAYVVGLTGSPGVGKSTSTSALVAAYRRAGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVEIASQADTSVVLLAPGMGDGIQAAKAGILEIGDVYVVNKADRDGADATARELNHMLGLGEARGPGDWRPPIVKTVAARGEGVDEVVEALEKHRAWMEEHGVLAERRVRRAAGEVETIAVTALRERIGDLHGDRRLDALAERIVAGELDPYAASDELITSLTGN
>NZ_CP040244.1|WP_137993295.1|6079802_6080279_+|MarR-family-transcriptional-regulator
METETATPWLTDAEQCAWRTYLDVNRMLTYQLEKDLQPFGLTINDYEILVNLSESAERRLRMSDLAMATLQSKSRLSHQITRMENAGLVRRENCESDRRGLYAVLTDHGMETMRKVAPHHVESVRRHFIDQLSSEALGDLHESLKPVAEQLRGRRGKP
>NZ_CP040244.1|WP_137993294.1|6078891_6079677_+|AIM24-family-protein
MSTPVIFDPMTLPSDDNVNPYTFCVELKGSQWFLQKGKMIAYYGRIDFNGIGHGRLDRLVRTSFHSPLHASDWVVAEGSGKMLLADRAFDVNSYDLDEGNLTIRSGNLLAYQPTLALKQSIVPGFVTLIGTGKFVAASNGPVVFMEPPMRVDPQALVGWADCPSPCHHYDHGYMTGVMGGVRALTGIGGTSGEEHQFEFVGAGTVLLQSTEMLMPERATGQPPAQAGVPGGHGAHGSGQAMPGSVPRLPGQLGDLQRRFGL
>NZ_CP040244.1|WP_137993293.1|6078244_6078895_+|AIM24-family-protein
MPFREINSKMVEATVVPGQRMFSQRGAMLAYRGDVTFTPNMAGGQGGVMSMIGRRVAGEATPLMTVEGNGTVMFGHGGHHIQVIQLTGDTLYVEADRLLAFDGTLEQGTMFMGSQGGVMGMVRGQVTGQGLFTTTLKGHGAVAVMAHGGVIELPITPGRAVHVDPQAYVAHHGDVRNKLSTALGWRDMVGRGSGEAFQLELSGSGAVYVQASEEKL
>NZ_CP040244.1|WP_137993292.1|6077606_6078245_+|AIM24-family-protein
MATFRLQGSKVLAVSMTGDAVKAKNGSMVAYDGQMAFKKMSGGGEGLRGMVTRRLTGEQMEVMEVKGQGTCWFADRASEINLVSLHGDKLYVEASNLLCTDAGLRTGTSFTGLRGGATGNGLFTTTVEGTGQAAIMSDGPAVVLRVTPQYPLSVDPGAYIAHQGNLQQSFQSGVTFRTFMGEGGGEAFQIRFEGDGLVYVQPSERNTIGGDV
>NZ_CP040244.1|WP_137993291.1|6077140_6077488_-|DUF3817-domain-containing-protein
MDIKTASSLHRLRLVSAPEAVSFLLLLVCSVLKRTTDFNAVPVMGAIHGILFILYVLFWLDAWNRTKWQFKTAALYFVLSVLPLGGFFAERKLKREAENAVDAAIAARREGTVSA
>NZ_CP040244.1|WP_137993290.1|6076850_6077144_-|MTH1187-family-thiamine-binding-protein
MIVAFSVTPLGVGEDVGEYVADAVRVVRESGLPNRTDAMFTSVEGEWDEVMDVVKRAVAAVEARAPRVSLVLKADVRPGVTDGLTSKVETVERHLSA
>NZ_CP040244.1|WP_137993289.1|6074705_6076631_-|glycosyltransferase
MWISTRSTTAGGTVRPRGYDYDTYSRLAGPLTEPDTAPYTVRYRSLLSKEPHRIRAVVLMGLAPVLSALLLVYLVWPSHWTVREGDDRWLVRFDTVMLVSIGLICFFMLVNVTSIAHATLVARDPIPVYPEKGTRVAFLTTYVPGKEPLTMVRATLEGAVRLRHCGPLDVWLLDEGDDDHAKALCAELGVKHFTRAGVPEWNRKKGVHKARTKHGNYNAWLAMHGDAYDFFASVDTDHIPLPNFLERMLGFFRDPDVAFVVGPQVYGNYTSPVTKAAESQQFLFHALIQRAGNRYHAPMFVGTNNVVRVRAVKQVGGLYDSITEDMATGFELHRRKNPRTGHFWRSVYTPDVLAVGEGPASWTDFFTQQLRWSRGTYETLIKQYWKTPFRVPPGRFLNYTLMLVYYPMTAVNWFLGILSCVLFLWLGASGTQVASSVWLMIYSDAVALQIGLYLWNRRHNVSPHEPEGSGGLAGMGMSALSAPIYLRSLGSAVLRTRGRFVVTPKGGAASPDRLLTFRIHLYWAVILIASLAASVFFGHTHAAMRTWAVLALVIALAPVAIWAWTTLHDRGRQRARDRIRARIRARGRAHARSGVGAGAGAGVGVGVPETEAAALVTKTTTAAPSATGPTTTAAPTTTGGN
>NZ_CP040244.1|WP_137993300.1|6087668_6088607_+|cellulose-binding-protein
MSDTSSPFGFELVRRGYDRGQVDDRITKLVADRDSALTRITSLEKRIEELHLETQNAQAQVSDAEPSYAGLGARVEKILRLAEEEAKDLREEARRAAEQHRELAESAAQQVRNDAESFAADRKAKAEDEGVRIVEKAQGEANSLRAEAQKDAQSKREEADALFEETRAKAAQAAADFETNLAKRREQSERDLASRQAKAEKRLAEIEHRAEQLRLEAEKLRTDAERRARQTVETAQRQAEDIVADANAKADRIRSESERELAALTNRRDSINAQLTNVREMLATLTGAAVAAAGSPIDDEPATRGVPAQQSR
>NZ_CP040244.1|WP_137993301.1|6088681_6089656_+|ATP-binding-cassette-domain-containing-protein
MIELEGLTKRYGTKTAVDHLSFQVRPGVVTGFLGPNGAGKSTTMRMMLDLDNPTSGTVRIDGKHYRDLQEPLKYIGALLDAKAMHGGRSAYNNLLCLAQSNRIPASRVGEVLDLVGLTPVARKKSKGFSLGMGQRLGIASALLGDPEILMFDEPVNGLDPEGIHWIRNLMKALAAEGRTIFVSSHLMSEMALTADHLIVIGQGKLLADTSMADFIHQNSRSYVRLRSPQQEQLRDLLHANGFTPVEAGNGTLEVDGATTEKLGELAAENRLVLHELSAQRASLEEAFMQMTAGAVEYHAHGTDVHGAQAPPAAGPRWGETTKGA
>NZ_CP040244.1|WP_137993302.1|6089659_6090439_+|ABC-transporter-permease-subunit
MAAVSAVLQSEWTKIRTVSSTIWTLASALLVTVAMSAALCALLSSTFEDLSPAEQATFDPTFISFSGMVLGQLAMVVFGVLVIGTEYSSGMIRTSLAAVPQRATFLFSKIAVAGALALLVGLATSFLSFFLGQALLGDHRTTLGADNVLRAVVGGGLYMGLIALFSMGVATMLRSSMLSLGILVPFFFLVSQILSAVPKAKDVARYFPDQAGSKIMQVVPDAMNSEKAPYGPWAGLGIMLIWVAAALLGGYLVMKKRDA
>NZ_CP040244.1|WP_137993303.1|6091492_6092611_+|ATP-binding-cassette-domain-containing-protein
MIEAVGLTKRYGAKTAVYNLSFQVRPGTVTGFLGPNGSGKSTTMRMILGLDRPTSGHVTIGGHPFRQLPNAPRQVGALLDAKAVHGGRSARSHLLSLAQLAGIPAQRVDEVLGVVGLQDVAKRRSKGFSLGMGQRLGIAAALLGDPQVLLFDEPVNGLDPEGILWVRNLMKKLASEGRTVFVSSHLMSEMALTADHLIVIGRGQLMADMSVKDFISANSADFARVRTPQTEPQQREKLTAALTEAGGQVMSEPDGALRVTGLPLPRISDLAHDADVRLWELSPHQASLEEAYMRMTQGAVDYRSTEDQLAHLQQPQPHPHAHQAGYAPPAQPEIPEVPQQGWYAPPPPGQNPYAAPQQSEPAQNATNVEDAR
>NZ_CP040244.1|WP_137993304.1|6092607_6093417_+|ABC-transporter-permease-subunit
MTTPYSYVSPIPVRRAHLGDALASEWTKIRSVRSTMWTLGVMVLLMLGIGLGVAAIVAGSEVSTEGESALGLGFFGVLLGSICVITLGVLTVASEYGTGMIRTTLTACPSRGRVLTAKAIVFFLLVFTVTTLTATVVALAQVAMVDAAEPTGAEWLRATVGVGLFIALLGLLSLAVGAMIRHSAGAITVMIGVLLLPLVAAMFMFSESLAKVQEWLLDYAIPSQLIALYAGKSAMTQSGPSGWDPVWILLIIAAAAMGGAYALLNSRDV
>NZ_CP040244.1|WP_137993305.1|6093494_6093821_-|ATP/GTP-binding-protein
MSPRRNRPKGGENPDPQGESADRYGGSQRSETWQGEEWLVRHVAGASAPGKRYRCPGCDQEIPGGAPHVVAWPEYGGVDDRRHWHKACWNAKDRRTSRVQRSRNAPRY
>NZ_CP040244.1|WP_137993306.1|6094020_6095055_+|LLM-class-flavin-dependent-oxidoreductase
MRVGTFVLAAQFPGQGQGEALHRAVRTAEVTEESGLDSVWLAEHHFVPYGVCPSAVTLAALLLGRTRRIRVGTAVSVLPAVHPVALGEQAALLHLTSGGRFTLGVGRGGPWIDLEVFGAGLKAYEQGFPESLDLLLRWLTEPRVAAEGERFAFREVAVVPRPDELIGGDAAPEVLVACTSSKSVRLAAERGLPMLLGMHCGDEEKAEMVAAWERCAREAGRTPDEIARIGAGHVSAGVAQLADRGADAAEALVKAMPGWLKQGLDAHVTVDGRHRAMRDPVAYTELLCGLHPVGTPRLAADRLAATSERTGITRFALLAEGTGDLAATEENVRRLGAEVLPLLT
>NZ_CP040244.1|WP_017236120.1|6095238_6095631_-|hypothetical-protein
MSLDVSPALLEQAERGEVDEADFVDCVRTSLPYAWEMISSLVAQLKVDGGEFADNQTPPPNEQARGQLLRALASDAIRGALQRHFGVRLAFQNCHRVAVFPLDPAVDERLARFTSVRGQLLNQSPELRDC
>NZ_CP040244.1|WP_137993307.1|6095851_6096532_+|endonuclease-NucS
MPTMRLVIARCSVDYAGRLTAHLPSAPRLILVKADGSVSIHADDRAYKPLNWMSPPCTLKEGADGEAGIWTVVNKAGEKLIITMEEILHDSSHELGVDPGLIKDGVEAHLQELLADRIETLGEGHTLIRREYPTAIGPVDILCRDADGATIAVEIKRRGEIDGVEQLTRYLELLNRDPHLAPVKGVFAAQEIKPQARVLATDRGIDCVVLDYDALRGIEDDKLRLF
>NZ_CP040244.1|WP_137993308.1|6096589_6099139_-|ATP-binding-protein
MDPMNRGPEEYGHDTEGDDAREGRGAPAPERGPSTAARARIARVVSGDLLLTVNPVDGSEIEACPPGEQPAPPRRRTAEERAEAARAAAPPVPPGPAAPPLPLLERQEEHERLVQLLARGRSVRVTGPAGSGRTALLDAVAADCAGLAPDGVVRLSGYHRTPTELLYDLFTTVQHAPDLRPDRPALLGLVHDIGAIVVVDDLEFGGTTLDELLAAAPECAFLLAATPDVPAPSPDAHLEEVSLAGLGRAAALALLESAVDRPLTDDEANWAGDLWFESEGLPLRFVQAGALLRQRDRLRVIPEEFDAFGTKEQEQEDAPTEFDAFGALDDAFGPAATAPAAPTTPTAPEASADVELREIPLPSLGEGAAPAALLASRLSHSAQDTLRFTVALGGEVPHQAHLPALVGDTHADAAVGELMACGLLSPVGARYRLAAGVLTQLLAQAYDEGAAARAHTVAQHYAWWAGHPSVTPTRAAAEADALLAALAALVPGSDPEHPATAVLLARSAAPAFAAGLHWGAWERALRAGQEAARLAGEVAEEAYFHHELGILALCAGNLQRARAELEASIGMRGVLADKRGTVAGRRALALVADRAGGAPSEDHAPAGDEQPTTRVEEPVSPPRGIPRAVVPASARTAPIPAFPDFADEGPTLITRPDAQPGGDGTKRGGRFGVIAGARRNLVAVGTGALLAAVLGTVVTIGATSGNAEDPGSNRVTSDRTASEDGVDDGLDADEPTEDSTSRPSESASPTPSGSPTSGTPSASGTPSSSSSPSGTPSTTAPTTVPPAPTTTAPRPTISPTTKPTPTKSPTPSTTSPTTPPTTPSTTPSTTTPPETTQSQDNPDNTGTPA

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Crispr_ID: NZ_CP040244_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_14

6342366-6342630

Orphan

Consensus_repeat	Method
GNNGNNTTCCCGCCGNNGNN	CRT
GAGGCTGGCCTCCGAGGCCTTCCCGCCGGG	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP040244_14

>merge|NZ_CP040244|14|6342366-6342630|CRT,CRISPRCasFinder
GAGGGCTCCCGCCGACGGACCCGACCGGAGGCGCCGGAGGCTGGCCTCCGAGGCCTTCCCGCCGGGAACCCGGCCGGACTAGCGCCCGAGGCTTCCCGCCGGCGAACCGGCCGGAGGCGCCTGAGGCTGCCCTCCGAGGCCTTCCCGCCGGGGAACCGACCGGGCTGCCGCCCGAGGCCTTCCCGCCGAGGACCCGACCGGGCTGCCGCCCGAGGCTTCCCGTCGGGGGCTGACCGGAGTCGCGCCGGAGGTTTCCCGCCGGGGT

>NZ_CP040244|14|3|6342366-6342630|CRT
GAGGGCTCCCGCCGACGGA	CCCGACCGGAGGCGCCGGAGGCTGGCCTCC
GAGGCCTTCCCGCCGGGAA	CCCGGCCGGACTAGCGCC
CGAGGCTTCCCGCCGGCGA	ACCGGCCGGAGGCGCCTGAGGCTGCCCTCC
GAGGCCTTCCCGCCGGGGA	ACCGACCGGGCTGCCGCCC
GAGGCCTTCCCGCCGAGGA	CCCGACCGGGCTGCCGCCCGAGGCTTCCCGTCGGGGGCTGACCGGAGTCGCGCC
GGAGGTTTCCCGCCGGGGT

>NZ_CP040244|14|11|6342402-6342517|CRISPRCasFinder
GAGGCTGGCCTCCGAGGCCTTCCCGCCGGG	AACCCGGCCGGACTAGCGCCCGAGGCTTCCCGCCGGCGAACCGGCCGGAGGCGCCT
GAGGCTGCCCTCCGAGGCCTTCCCGCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137993502.1\|6346606_6347116_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993498.1\|6342702_6343563_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_CP040244.1\|WP_137993504.1\|6348170_6349442_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP040244.1\|WP_137993495.1\|6337184_6338045_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP040244.1\|WP_086024648.1\|6340782_6340935_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993492.1\|6333409_6333679_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993503.1\|6347223_6347985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993506.1\|6350049_6351183_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP040244.1\|WP_137993494.1\|6334961_6337088_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP040244.1\|WP_137993501.1\|6345453_6346581_+\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
NZ_CP040244.1\|WP_137993493.1\|6333739_6334474_-\|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein	unknown	unknown	gnl\|CDD\|205967
NZ_CP040244.1\|WP_137993500.1\|6344469_6345054_-\|suppressor-of-fused-domain-protein	unknown	unknown	gnl\|CDD\|377450
NZ_CP040244.1\|WP_137993497.1\|6341035_6341641_-\|MarC-family-protein	unknown	unknown	gnl\|CDD\|225006
NZ_CP040244.1\|WP_137993491.1\|6332926_6333214_+\|DUF3107-domain-containing-protein	unknown	unknown	gnl\|CDD\|378634
NZ_CP040244.1\|WP_137993499.1\|6343680_6344319_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993505.1\|6349431_6350007_+\|DUF1003-domain-containing-protein	unknown	unknown	gnl\|CDD\|377629
NZ_CP040244.1\|WP_137995094.1\|6339661_6340495_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NZ_CP040244.1\|WP_137993507.1\|6351337_6351964_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993496.1\|6338174_6339044_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP040244.1\|WP_137993490.1\|6332187_6332847_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137993498.1\|6342702_6343563_-\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	2.21794e-49
NZ_CP040244.1\|WP_137993495.1\|6337184_6338045_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.53993e-21
NZ_CP040244.1\|WP_137993494.1\|6334961_6337088_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	7.1528e-135
NZ_CP040244.1\|WP_137993506.1\|6350049_6351183_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.22306e-130
NZ_CP040244.1\|WP_137993504.1\|6348170_6349442_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	4.39729e-48
NZ_CP040244.1\|WP_137993501.1\|6345453_6346581_+\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	9.3218e-169
NZ_CP040244.1\|WP_137993493.1\|6333739_6334474_-\|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein	gnl\|CDD\|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	1.53119e-88
NZ_CP040244.1\|WP_137993500.1\|6344469_6345054_-\|suppressor-of-fused-domain-protein	gnl\|CDD\|377450	pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU, encoding the human orthologue of Drosophila suppressor of fused, appears to have a conserved role in the repression of Hedgehog signaling. SUFU exerts its repressor role by physically interacting with GLI proteins in both the cytoplasm and the nucleus. SUFU has been found to be a tumor-suppressor gene that predisposes individuals to medulloblastoma by modulating the SHH signaling pathway. Genomic contextual analysis of bacterial SUFU versions revealed that they are immunity proteins against diverse nuclease toxins in polymorphic toxin systems.	4.93079e-31
NZ_CP040244.1\|WP_137993497.1\|6341035_6341641_-\|MarC-family-protein	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	3.35485e-41
NZ_CP040244.1\|WP_137993491.1\|6332926_6333214_+\|DUF3107-domain-containing-protein	gnl\|CDD\|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	1.47272e-35
NZ_CP040244.1\|WP_137993505.1\|6349431_6350007_+\|DUF1003-domain-containing-protein	gnl\|CDD\|377629	pfam06210, DUF1003, Protein of unknown function (DUF1003). This family consists of several hypothetical bacterial proteins of unknown function.	8.33754e-47
NZ_CP040244.1\|WP_137995094.1\|6339661_6340495_-\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.31858e-07
NZ_CP040244.1\|WP_137993496.1\|6338174_6339044_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.86436e-14
NZ_CP040244.1\|WP_137993490.1\|6332187_6332847_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.54274e-15

>NZ_CP040244.1|WP_137993497.1|6341035_6341641_-|MarC-family-protein
MFDVAVFGSLFLTLFVIMDPPGITPIFLALTSGRPAKVQRRMAWQAVAVAFGVITVFGILGQQILAYLHVSVPALMIAGGLLLLLIALDLLTGKTDEPKQTKDVNVALVPLGMPLLAGPGAIVSVILAVQHADGVGAQVSVWAAIVAMHVVLWLTMRYSLLIIRVIKDGGVVLVTRLAGMMLSAIAVQQIINGVTQVIQGA
>NZ_CP040244.1|WP_086024648.1|6340782_6340935_+|hypothetical-protein
MRFEILRLDDIDGTPVDRTVVDAASVNRIVQQAASIGQRIWIRPAETSAS
>NZ_CP040244.1|WP_137995094.1|6339661_6340495_-|NYN-domain-containing-protein
MLAEVAKTPSTHAIFVDAGYVYAAAGLLVAGTEDRRSFDLDAEGMIEAFIDKARTIFADSRLLRVYWYDGARRRIHTPEQQSIAELPDVKVRLGNLNANNQQKGVDSLIRTDLESLARHRAISDAALVGGDEDLVSAVEAAQGYGARVHLWGIEAAEGRNQAEPLLWEVDSQRTFDLDFCRPYVTRRPVTTYENEGEPPPSRDEVRFIGAQIAATWLAERGRDALAELLPGHPYLPGPVDQDLLIEAEKLLSRSLRGHAALRRALRDGFWQHVQAQF
>NZ_CP040244.1|WP_137993496.1|6338174_6339044_+|alpha/beta-fold-hydrolase
MNRDRTAYVTGSVVSKDGTVLGYRRLGDGPPVVLVHGSMMSSYNFMKLGTALARDFTVYLPDRRGRGLSGPYGPAFTLQRAAEDVQALMDAAHARRVFALSAGANAVLQWALTAPEECKIALYEPPLPVGGSRLAAWLPRYDSEMHHNRPGAAMVTVAKGTKDSRLLQVLPRPVAVPLMDFAMRAQARQAHTDEVPLIDLIATMHHDAQLVLGAEGLIAASTAVRADVLLLGGGRSPRYLKDALDALHAAIPRSRTTRLRGVGHLAADNGGQPGRVARALRGYFSDPPP
>NZ_CP040244.1|WP_137993495.1|6337184_6338045_+|alpha/beta-hydrolase
MSKPRSLALPPRTRAYRLVTARGDFAVLDTAPQGEPRGTVLLLPGYTGSKEDFLALLGPLSDAGYRAVAVDGRGQHESPGPRHRSAYTRRALALDAISQAAALGDGSVHLLGHSFGGVVARGAALLAPESFRSLTLLSSGPGPVARPQRIRVRVLRGALAVLPKERVWRATRWLDSRGEEPGVTDPPEIVMFLRRRWMRTRVVQLAVAGRLLRRDRDGHAQLAQLTVPLHIAYGDEEMVWPVVGLAEVALRTGAHHTVVVGAGHSPNVSHPQELADRLVAFWERCP
>NZ_CP040244.1|WP_137993494.1|6334961_6337088_+|DEAD/DEAH-box-helicase
MTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHVKALVLDEADEMLDLGFLPDVEKIINMLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGVTVANITQRVYRAHSMDKPELISRVLQANGRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTFLHRVGRTGRAGAKGTAVTLVDWDDIPRWQLINKALGLDFHDPVETYSSSPHLYEELDIPAGTKGVLPRTERTRAGLGAEELEDLGEPGGRGGRGRKQAAAPVAEERPARTRAPRQRRRTRGGTALEESAAAVTTTTAAPVAEDAPAEPRTPRRRRRTRTGAASSAPVVEAPKASAAPVTRVAQVAQVASVVAQATPVDEAPKAPRRRRARVVKPEESVSFQTVETAAAALAVAEPVVEPVVAPVAETVAEEPKKAPRRRTAKKAVAAEAPAVEAAEAVAVVEEPKKAPRRRTAKKAVAAEAPAVEAPAVEAAEAVAVVEAVEEAPKAPRRRTTKKAVAAEAPDASEPKAAPRRRTVKKATAAPAEATETAETTGTAAEAPKSPRRRTTKKAAAAKTES
>NZ_CP040244.1|WP_137993493.1|6333739_6334474_-|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein
METSDNATPAEEPTGIAAQDWATASAEPQYRAAVVDLLGALAYGELAAFERLAEDAKLAPTLADKAELAKMASAEFHHFEQLRDRLAAVDAEPTAAMEPFAKALDDFHRQTAPSDWLEGLVKAYVGDSIASDFYREVAARLDSDTRRLVLSVLDDTGHGNFAVEKVRAAIEADPRVGGRLALWARRLMGEALSQAQRVVAERDALSTMLVGGVADGFDLAEVGRMFSRITEAHTKRMAALGLAA
>NZ_CP040244.1|WP_137993492.1|6333409_6333679_+|hypothetical-protein
MFLEALGSALLGLALAWAAVHRLPDRLPARGVVLTTGSLGAVFGALVTHGALGPGHALATLIGAIAIAAVLLSLLIRPAARRLRRSAAA
>NZ_CP040244.1|WP_137993491.1|6332926_6333214_+|DUF3107-domain-containing-protein
MCAAYGAGKRATLTVRRDIAVEVKIGVQHAPREIVLESGQSAEEVERAVADALAGKAQLLSLTDEKGRKVLVPAEKIAYVEIGEPAVRRVGFGAL
>NZ_CP040244.1|WP_137993490.1|6332187_6332847_+|TetR/AcrR-family-transcriptional-regulator
MTAIEQTEAARPRGTRLPRRARRNQLLGAAQEVFVAQGYHSAAMDDIAERAGVSKPVLYQHFPGKLELYLALLDQHCESLLQAVRTALASTTDNKLRVAATMDAYFAYVEDEGGAFRLVFESDLTNEPAVRERVDRVSLQCAEAISDVIAEDTGLSKDESMLLAVGLGGVSQVVARYWLSSESAIPRDKAVALLTSLAWRGIAGFPLHPTEGQLSAEGH
>NZ_CP040244.1|WP_137993498.1|6342702_6343563_-|PHP-domain-containing-protein
MRIDLHTHSTASDGTDTPAELVRNAAAAGLDVVALTDHDTTRGHAEAIAALPEGLTLVTGAELSCRLDGVGLHMLAYLFDPEEPELAAERELVRDDRVPRAQAMVTKLQDLGVPVTWDQVARIAGDGSVGRPHVAEALVELGVVPDVSGAFTPQWLADGGRAYVRKHELDPFDAIRLVKAAGGVTVFAHPLAVKRGEVVPESAIARLAEAGLDGIEVDHMDHDDATRARLRGLAKELGLLATGSSDYHGSRKTCRLGEYTTDPEIYGEITRRAAGAFPVPGAGGRA
>NZ_CP040244.1|WP_137993499.1|6343680_6344319_-|hypothetical-protein
MRGEPSCPKCGGRVRAPGLFADSWQCDVHGSVHPLQPVIPPSVEALGVVVHRAQVPVWMPWPLPVGWLFTGVAYAGDDRSGGRATAVACSGPGPLGGIGELLLIAEELGVGLGARYAGIDGPDPGAGMSIEKPAQTKVLAAGRPTPLWHVNGTPQDRAVFAGEARGLWLWAIVWPEQSGLLMYDELVLTDLRDAGAEVELLPCGALTPRLLT
>NZ_CP040244.1|WP_137993500.1|6344469_6345054_-|suppressor-of-fused-domain-protein
MGEVLALVEARLRSALGEPDARAAVTFLGTDRIEVLRFIDGDVVRYATLGMSAHPMTDPTSALADPVKGPRAELVLSVRAGVADTDKVLRPLAVLASTPQVEGVVVAPGASLDVGEPLWPGAPFSSVLVAESGGLVEDLELDEPMDPVRFLPLLPMTSNEAAWKRVHGAQALEERWLANGTDVRDPLRRSVTLD
>NZ_CP040244.1|WP_137993501.1|6345453_6346581_+|magnesium-and-cobalt-transport-protein-CorA
MSMIRDLRAAVRPSLRPSLRKPSAPYAAYDFTRDPSASSAVVDCAVYRDGRRVDDRACLTPRGAMRQVRESGGFAWIGLHEPTEAEFAGIAAEFGLHPLAVEDAVHAHQRPKLERYDDTLFTVFKTIHYVEHAELTATSEVVETGEVMCFTGPDFVITVRHGGQGSLRNLRHRLQGEPELLAKGPSAVLHAIADHVVDGYIAVADAVELDIDQIEIDVFSPPAKGSTRGTDTGRIYQLKREVLEFKRAVTPLLRPMQLLSERPMRLVDPDIQKYFRDVADHLARVQEQVVGFDELLNSILQANLAQATVTQNEDMRKITSWAAIIAVPTAVCGVYGMNFEHMPELEWKYGYPMVLVGITVICFAIHRTLKRNGWL
>NZ_CP040244.1|WP_137993502.1|6346606_6347116_+|hypothetical-protein
MTDTLLGPALVEEATKKSGLIWVRGDAPTARALWHVWHEGAAHVVGDGPGEQPLPGLVAGSTAEVTVRSKDKGGRIVAWTAAVSELAPGTEAWDAAVAELKGKRLNATDGEAMPERWARECRVLRLEPLDSTTDLPDGSLAAVPQRSDAVTRRPAPAGLPRLLFKRRKR
>NZ_CP040244.1|WP_137993503.1|6347223_6347985_-|hypothetical-protein
MTALPTASRIRRAVLPVALCAGLAAGLTACASDPDEGTNGVGKLDATAIEQKAQSAADAAKAVRLAGTLVSKGGTYKLNMRLKQDGASGSVTTKNSTFELLRIGDALYLKADAGFWAHGADKATATPSEADSEAADKLDDKYVKVPQDDPSYKQLRGFTDMDMLLNGLIGLHGDIVKGDRDKIGGIRTVKVKGGQDGEGGTLDVALEGLPFPLQFARGGGAGVVVLSEWDKDFPLEAPAPGQTLDYGKQLPRT
>NZ_CP040244.1|WP_137993504.1|6348170_6349442_+|magnesium-transporter
MAAGAPRIFVSHLAGVPVFDPNGDQVGRVSDLVAMLRVGRRPPRLLGMVVEVLSRRRVFVPMTRITGVESGQVITTGVVNMRRFEQRPTERLVLGELLDRRVRLVESDEEVTVLDVAIQQLPARRDWEIDKVFVRRGKGGALRRKGETLTVEWSAVTGFSLEEEGQGAENLVATFERLRPADLANVLHHLSPKRRAEVAAALDDDRLADVLEELPEDDQIEILGKLKEERAADVLEAMDPDDAADLLSELPEEDKERLLTLMRPDDAADVRRLLAYEERTAGGLMTTEPIVLRPDATVADALARVRQQDLSPALAAQVYVCRPPDETPTGKYLGMVHFQRLLRDPPFTLVSSLVDSDLPPLAPDTPLPAVTSYLAAYNMVAAPVVDESGSLLGAVTVDDVLDHLLPEDWRDTEFHEGRPVHGS
>NZ_CP040244.1|WP_137993505.1|6349431_6350007_+|DUF1003-domain-containing-protein
MAAERTQERERERERAMPRIRLDLPRERRLRLLPEYDPEAFGRVSERIARFLGTGRFIVWMTVTIIVWVLWNIFAPASLKFDEYPFIFLTLALSLQASYAAPLILLAQNRQDDRDRVNLEQDRKQNERSIADTEYLTRELAALRMGLGEVATRDWIRSELQDLIKDMEELQNGHRDLFPPGEGHRSDVPDR
>NZ_CP040244.1|WP_137993506.1|6350049_6351183_+|Mrp/NBP35-family-ATP-binding-protein
MATEDAVLEALATVNDPEINKPITELGMVKSVEIGADGVVAVTVYLTVSGCPMRDTITQRVTDAVSRVEGVTGVDVSLDVMSDEQRKELAAALRGTTAEREVPFAKPGSLTRVYAVASGKGGVGKSSVTVNLAAAMAADGLKVGVVDADIYGHSVPRMLGADGRPTQVENMIMPPSANGVKVISIGMFTPGNAPVVWRGPMLHRALQQFLADVYWGDLDVLLLDLPPGTGDIAISVAQLVPNAEILVVTTPQQAAAEVAERAGSIAVQTHQKIVGVVENMSGLPCPHCDEMVDVFGTGGGQRVADGLTRTTGATVPVLGSIPIDVRLREGGDEGKPVVLTDPDSPAGSALRAIAGKLGGRQRGLSGMSLGITPRNKF
>NZ_CP040244.1|WP_137993507.1|6351337_6351964_-|hypothetical-protein
METTSRVEGVPTARRTAEGYLRAPFAWYGLDEAFTGPRWLMQVGTAADGTVQHGSMGHGDEPSIKSDASGAEKERFAVVVTVAASPVRRTGDGTGVLDATTVASAAWLAGSGLLAYTWPAQLDHTLRDDWLDQQTETAFELADDLEGPAWSTLSLPVDGVPVPFHYRESEFGWVLAGSAGEVHIGAFGRGMSAYGLGFSAVEDLGLYA

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Crispr_ID: NZ_CP040244_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_15

6370440-6370537

Orphan

Consensus_repeat	Method
GCCGCCGCTGTAGGAGGACTTGCGCCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040244_15

>merge|NZ_CP040244|15|6370440-6370537|CRISPRCasFinder
GCCGCCGCTGTAGGAGGACTTGCGCCAGGTGGCGTACGCCTCGTTCACTTCGAGGCAGTTGCCGCTGTCGCCGCCGCTGTACGAGGACTTGCGCCAGG

>NZ_CP040244|15|12|6370440-6370537|CRISPRCasFinder
GCCGCCGCTGTAGGAGGACTTGCGCCAGG	TGGCGTACGCCTCGTTCACTTCGAGGCAGTTGCCGCTGTC
GCCGCCGCTGTACGAGGACTTGCGCCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137993519.1\|6364053_6365160_-\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236119
NZ_CP040244.1\|WP_137993522.1\|6367639_6368125_+\|DUF1877-family-protein	unknown	unknown	gnl\|CDD\|378105
NZ_CP040244.1\|WP_137993521.1\|6366675_6367512_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|372582
NZ_CP040244.1\|WP_137993527.1\|6376002_6376347_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993529.1\|6377295_6377490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993518.1\|6363549_6363975_+\|ATP-binding-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137995099.1\|6373248_6373632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993516.1\|6361168_6362251_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237264
NZ_CP040244.1\|WP_137995101.1\|6379901_6380837_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993520.1\|6365677_6366679_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040244.1\|WP_137995100.1\|6373694_6375647_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP040244.1\|WP_137993530.1\|6377663_6379814_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|366030
NZ_CP040244.1\|WP_137993517.1\|6362288_6363215_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137995098.1\|6371483_6371708_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993528.1\|6376343_6377234_-\|N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha--D-glucopyranoside-deacetylase	unknown	unknown	gnl\|CDD\|274584
NZ_CP040244.1\|WP_003985062.1\|6365244_6365565_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NZ_CP040244.1\|WP_137993515.1\|6360322_6361072_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP040244.1\|WP_137993526.1\|6372871_6373186_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137993523.1\|6368717_6370304_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040244.1\|WP_137993525.1\|6370548_6371373_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137993519.1\|6364053_6365160_-\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236119	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed.	0
NZ_CP040244.1\|WP_137993522.1\|6367639_6368125_+\|DUF1877-family-protein	gnl\|CDD\|378105	pfam08974, DUF1877, Domain of unknown function (DUF1877). This domain is found in a set of hypothetical bacterial proteins.	1.96503e-11
NZ_CP040244.1\|WP_137993521.1\|6366675_6367512_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|372582	pfam13369, Transglut_core2, Transglutaminase-like superfamily.	6.83986e-42
NZ_CP040244.1\|WP_137993516.1\|6361168_6362251_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237264	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP040244.1\|WP_137993520.1\|6365677_6366679_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.35386e-11
NZ_CP040244.1\|WP_137995100.1\|6373694_6375647_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	1.57971e-16
NZ_CP040244.1\|WP_137993530.1\|6377663_6379814_+\|S9-family-peptidase	gnl\|CDD\|366030	pfam00326, Peptidase_S9, Prolyl oligopeptidase family.	4.9763e-43
NZ_CP040244.1\|WP_137993528.1\|6376343_6377234_-\|N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha--D-glucopyranoside-deacetylase	gnl\|CDD\|274584	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase, also called 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species. [Cellular processes, Detoxification].	1.67423e-131
NZ_CP040244.1\|WP_003985062.1\|6365244_6365565_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	3.13459e-11
NZ_CP040244.1\|WP_137993515.1\|6360322_6361072_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	2.52424e-54
NZ_CP040244.1\|WP_137993523.1\|6368717_6370304_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.70408e-79
NZ_CP040244.1\|WP_137993525.1\|6370548_6371373_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.66914e-10

>NZ_CP040244.1|WP_137993523.1|6368717_6370304_+|serine/threonine-protein-kinase
MRPLDASMPTEAGPYRLLTELGSGGMGRVFLGAAPDGRLAAVKQVHHRFAAEDGFRTRFRREVAASGKVSGAYTAAVMDADADADLPWLASVFVAGPSLGAAVEATGALPAETVRRLAVGLVTALHEIHRAGLIHRDLKPENVLLAEDGVRVIDFGIARAAEPLGATALTQTGWVIGSPPFMSPEQAESAELTPASDVFSLGSVLALAATGRAPFAADSVFKTLSNVVHAEPDLDKVPEELREIVARCLAKDPTARPTLTELHGLLGPVSPAARPWPPVVHRLIADQKDRLEAVLGGGGDESVAQERTSTPSPPEPEPVPAPDAETVTATAHSPAPAPSRPHRRHGRLVALVATGALALAGAGVGTYLMLRNEGPPDKYAKVPVCEDAAPKLPLPDRLKSEDINVQNGPVTVTRCSWYEEDVVANWAVTPHAVVRWTLRRTADTNGNATERQDEAFDKEASPGRRDESLDFGDEAHWDASASDRYCSLNVRDGNLVVWVMLTGDRHPYGACEQEARTIAKTAVSAMPE
>NZ_CP040244.1|WP_137993522.1|6367639_6368125_+|DUF1877-family-protein
MSIYLHFRAVAESEIRDDHAWLAAFMSEAWENDIAEYEAGIAHSINKGWDAVSDLYSVADARYADADEPWNLPIYGGRPVPHSAGADPSDPPLMLLEPPGVSQAARFLTTVSFDALWNVVGARFSVLGGTREEYLDHHRDLQEFYGQAASAGHAVVKAVWA
>NZ_CP040244.1|WP_137993521.1|6366675_6367512_+|tetratricopeptide-repeat-protein
MTDVTSVTDWRREFANEARSRRPDLARLCLLIGAEADPDVTEADLDAAEIELDRLAGELPYGVRDPAGWVAALARLLGGRYGFQGVPADYQRLESSLLHEVLRRRRGLPILLSVVWMEVARRAGAPVYGLGLPGHFVVGFGDPADQVLADPFAGGRAMTGMDAELLVAGATGEPLEPSMLRPTDPLDIVLRILNNIRAWAAPRPERSEVALWAVELSLLLPSHPARLRYEHAELLVQRGEFLAGAAEMEAYATVVDAVEPSAAASIRNRAQAARALLN
>NZ_CP040244.1|WP_137993520.1|6365677_6366679_+|GNAT-family-N-acetyltransferase
MEFTAGGRLDVRITRADVGKRVSVRYVTDVAAPGAKFTDAVGVLTSWDEGVLLITRRTGERVRIAESALVAGKVVPAAPARRRGPAASFEELARVTARAWEPVESEALGAWTLRAAAGFTRRANSVLPLGDPGVPLDEALERVRAWYAARGLPAYVQAATGAEGTQELLCAELERHGWRREVSAEVRIAGLAPIADLDADISTVRLSRSPDASWLHLYNRSDVPGPHVLSVLSSGPSVWFASVPGTGEVPAAIGRCVVDGRWAGFMAVEVDPAYRRQGLATAVMTALARQALDEGASAAWLQVETDNAGARALYEGMGFAVHHHYHHYRAAEA
>NZ_CP040244.1|WP_003985062.1|6365244_6365565_-|ferredoxin-family-protein
MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDDTPEEWKDYYKANVEFFDELGSPGGASKLGLIERDHPFIAALPPQNG
>NZ_CP040244.1|WP_137993519.1|6364053_6365160_-|succinyldiaminopimelate-transaminase
MSAVSGAVSSRLPVFPWDKLEPYKKTAAAHPDGIVDLSVGTPVDPVPELIQRALVAAADSPGYPTVWGTTELRDALTGWCERRLGAVGFTHRNVLPVVGSKELVAWLPTQLGLGAGDKVAYPRLAYPTYEVGARLCGAEPVVYDDPTELDPAGLKLLWLNSPSNPTGKVLGKDELVRIVAWAREHGVLVFSDECYLELGWEADPVSVLHPDVCGGSYEGIVAVHSLSKRSNLAGYRAAFIAGDAAVLGELLQIRKHGGMMTAAPVQAATVAALGDDAHVAEQRERYAARRAALRTALEAHGFRIEHSEASLYLWATRDEPCWETVAYLAEKGILVAPGDFYGAAGERFIRVAFTATDERVEAAVKRLG
>NZ_CP040244.1|WP_137993518.1|6363549_6363975_+|ATP-binding-protein
MSLPLTRRIARAALLVAAGATPVVGAAGSASAMDHSLAPTGALSGLTAVDSASLGNTVDGASQATTDVVGKTGGKSVDKAGKTVGKAGKSATPTAKKVAGEAGEVLGETAGAATESAEAPTGGAVGSLPTGGLMGGLPIGG
>NZ_CP040244.1|WP_137993517.1|6362288_6363215_+|hypothetical-protein
MSEPTRTSRSGRLTRFTAAFAVLLGLAAYVAVHHVTGSRGAPRCVVGTGGHTYTFTPEQASNAATISAVGTTRRMPERAVTIALATALQESALRNIAHGDRDSLGLFQQRPSQGWGTPEQIMDPVYSSGKFYEGLDKVPGYSRLPLTVAAQKVQRSGFPQAYAKHEPDAALLAAALTGRSAASLSCTASPAKKGLPGDPAKVRAELVRAFGEKAAPKAATQGAGSAGRSGVHAGATPDLLSVPVLATGGTDARRGWELAHWAVARADALRIVEVAYADKLWRASDASGTWTKTAAAAGDGTVRIRLAR
>NZ_CP040244.1|WP_137993516.1|6361168_6362251_-|succinyl-diaminopimelate-desuccinylase
MADYAPLDLTLDGPALTAALVDFPSVSGTEKPLADAIEQALRALPHLTVDRHGNNVVARTRLGRAERVVLAGHIDTVPIADNVPSRLDENGILWGCGTSDMKSGVAVQLRIAATVPEPNRDLTFVFYDNEEVAADLNGLGKVAEAHPDWLEGDFAVLLEPSSGQVEGGCQGTLRVFLRTEGERAHSARSWMGSNAIHAAAPILARLAAYEPRKPVIDGLEYHEGLNAVRIEGGVANNVIPDACTVVVNYRYAPDRSPAEALAHVHEVFADCGVAEFVVDDESPGALPGLSHPAAAAFMKAVGGTAQPKFGWTDVSRFSAVGVPAVNYGPGDPLYAHKRDEHVAVETIRHCEDRLRDWLTA
>NZ_CP040244.1|WP_137993515.1|6360322_6361072_-|TIGR00730-family-Rossman-fold-protein
MGIPEGASKPEEQRLGPVFRRRDQVQAGTTDQRLLDTEGDSEWVHTDPWRVMRIQSEFVEGFGALAELPSAISVFGSARTKPGSPEYEAGVRIGRALVEAGFAVITGGGPGSMEAANKGAREANGISVGLGIELPFEQGINPHVDIGVNFRYFFVRKTMFVKYAQGFVVLPGGLGTLDELFEALTLVQTRKVTRFPIVLFGTEYWGGLVDWLRDSVVAGGKASERDLLLFHVTDDVEETVAMVSKEIGH
>NZ_CP040244.1|WP_137993525.1|6370548_6371373_-|helix-turn-helix-domain-containing-protein
MAIEDNPESRRKYGEELKRRREAAGLTQERLSELTIISRTHLAHMEAGRRRPDVADARRLDRVLEAGGFFERFLPTLDGKAVAEHFAEALEFEGQATVIRVYGQTLIPGILQTRAYAEDVLSTGPEPQSDEERDKLLVTRLERARILENFDSPMVWTILDEAVIRRNIGGPAVMCEQLRHIVRLAERRRIRVHVLPFSAGAHALLEGFVSLMWFEDQPPIAYVEGLNSGRVWENPAMVRECQLDYDHALGDALSHSESLALIRTVAEEYEHAAR
>NZ_CP040244.1|WP_137995098.1|6371483_6371708_+|hypothetical-protein
MESPHAPGAYVAHRGTDVYGPGKVIGVDGAHRRVRFTHFVATIRAEDLRAASPVEAQEIQDWLRAKQLRYGGEW
>NZ_CP040244.1|WP_137993526.1|6372871_6373186_+|hypothetical-protein
MAKTRISISLKSEDAELIRKIAAENGLDVSAFLVMAGRKEAKRLAEVAAAFAEIDARIAAAEAEAESLEWPPVEDLDPAEVTRVEAEIAAARALSAARRRGAAA
>NZ_CP040244.1|WP_137995099.1|6373248_6373632_+|hypothetical-protein
MLIALATPRPGLTTPRHREFGLHGLPVVPAPVIAQAWRGGTSKAHLARALKDCAVICCYTEAEWRRVGELIGEASLPSKKRPDPLDGLVALTATQVGAAAVATSDPDDIQAYLDVLPGGHSVLPLRV
>NZ_CP040244.1|WP_137995100.1|6373694_6375647_-|hypothetical-protein
MPEEPKTETTLTTRIRINIPGSRPIPPVVVRTPVAEAQAEAQSQAASEPEPVVEPEPEAPAPVEPPKAEEKPASDWFAPRKPATPAAPAAPSGPAGPSAPAAPAAPSASAAPSALSSLDAPSGPGAGAGARPGAGSGARPGAGAPGRTPPAGVRPPSKGGPARGSGFAGPATGAIPTVGGASISATPSAGKPSYLATPQDEPTYGTPAGDPFYAGPPQPPTGPTSGPVTGSSPIGSPAGGAPRMSDDTAVLTPQPPAPAAPASGPLSPFAPGASSDGGRGHVSGDTLTSGIPVVPPAPEPGFSAPEVMGGAPAPAAPRPARPSPASRPASAAPAKKGRSKLVLVGAGVFGLLGVAYGAGLLLNHSDVPKGTTVLGVDIGGGTKDEAVNKLESTLGKRAHAPLQLSVGGKKVELAPDKAGLALDSQETVRAAAGSDYNPVSVIGSLFGGERVAEPKLPVDEEKLAVALRDVSGASGSATEGTIVFSPGKVTAVEGKPGKGLDVGRSMIFVKDAFRAQVQTGQSNVVELPVVTRQPTITKTELDRAMKEFAQPAMSDLITIKAGTKEIKFGPARSLPKILSMKAVNGRLIEVYDKKAIDELLDGVFDGIMITKGDGKKHQVSADDVAFVMRDALMGKTPAERTKTIDLDPQG
>NZ_CP040244.1|WP_137993527.1|6376002_6376347_-|hypothetical-protein
MSIRIVWYAVFLVLGALVGAAGSLAQAAWVPGGLILALLATAGVFYGGLRATDTQLGIAAPGVGWLVTIVLLSLGRPEGDGVFGGGIVEMIYILGGMGIAVMCATMSRLPRPAP
>NZ_CP040244.1|WP_137993528.1|6376343_6377234_-|N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha--D-glucopyranoside-deacetylase
MTVLPARRLLLVHAHPDDESINNGATMARYAAEGAQVTLVTCTLGEEGEVIPPELAHLAPDREDRLGDHRVGELADAMKELGVTDHRFLGGPGRFRDSGMMGVEQNRRENAFWNTDVDTAAPYLVEVIRETRPQVLVTYDPDGGYGHPDHIQAHRVAMRAAELAADASYRPELGPAHAIAKIYWNRVPRPVAEAAFARLRAEGAGFPGIADVGDVPGVVEESLITAEIDGGTAYAARKTAAMRAHATQIAVEGPFFALSNDLGQPIFTTEYYQLVSGTPGAPAGARETDLFAGVTA
>NZ_CP040244.1|WP_137993529.1|6377295_6377490_-|hypothetical-protein
MALSISAVVLLAIVVFLLIRKSGLKAGHAAVCALLGFYLASSSIAPSISTLTTNVAGMIGGLKF
>NZ_CP040244.1|WP_137993530.1|6377663_6379814_+|S9-family-peptidase
MTSRQQRSFPLSFPRQYARTQRFTLGVPRAFTVSPDGERVVFLRSASGTDRSHALWVLDLEGREGEPEERLAADPETLLAGAAEELSAEERARRERSREGSGGIVAYAVDSAVELAAFALSGRLFAAELRAGTARELEVPGPVIDPRPSPDGRHVAYVAKGALRVTGADGEGDRALAEPEDAHTTYGLAEFVAAEEMGRSRGYWWSPDSERLLVARAHDRAVRRWWISDPAHPDREPQVVAYPAAGTPNADVWLYVVDLAGERTEVTWDRERYPYLARVHWSADGAPLILVQARDQRTQLHLAVDTTTGATRTVHVDEDPVWLELLPGVPAWAPDGRLVRIADEGGARVLAVGDRALTGGALHLRSVLDIGENDVLVAASAGEEAAEPETGEIHVYRVNELGVERVSEGVGVHSAVRGGAVTVLSSARPDTPGSVARVLRDGEQVAVIASHAETPVLSARVRLLEGGARRIPCAVLLPSGYGEGDGLLPVLMDPYGGPHGQRVVAAHNPHLTSQWFADQGFAVIVADGRGAPGRSPAWEKAIRDDLTPTLDDQIEALHALAKDFPLDLGRVAIRGWSYGGYLAALGVLRRPDVFHAAIAGAPVTDFRLYDTHYTERYLGMPQDGPEVYAANSLVTDDGLSAPEDPARPLMIIHGLADDNVVMAHTLRLSSALLAAGRPHEVLPLTGVTHMTPQEQVAENLLLLQVEFLRRSLGLAP
>NZ_CP040244.1|WP_137995101.1|6379901_6380837_-|hypothetical-protein
MTRAARLTGAALSVALALTAAVWIVRDLAATGSPAELAWLWAGDHRFLLQSRTATSGLDPLLLLVHLATAVAALRSPLAASALAASGAVTLALRIPGLWATSAGTAALVTTLVDLALAAALLVTAAVGRRPADSTYEPLPARPRPGPAVAAGVLLLAAGLAWTAWEVHWALEFPAEVTVDRYTGGRSLLAPLLAPPPGWLSAVLVLLLLTAAGSAFARPPYSRPLGLVAGALLWGGGLMGVAVAVRYELFARFPDLSGVQQLTFLTSLFEMLAGAAVLAVLAAPGERRVAPAPPGTPALAPAPPSPRPPGW

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Crispr_ID: NZ_CP040244_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_16

7329130-7329275

TypeV-U4

Consensus_repeat	Method
GCCGAGCCTCCGGGCCCAGCCGGGCCTCC	CRISPRCasFinder

2 spacers

c2c9_V-U4

The CRISPR arrays of NZ_CP040244_16

>merge|NZ_CP040244|16|7329130-7329275|CRISPRCasFinder
CCGGGGCCTCCCAGCCCTGCCGGGCTGTCCGGGCCTCGCCGGGGATCTCCCAGCACTGCGTTGCCGAGCCTCCGGGCCTCGCCGGGGATCTCCCAGCCTGCCGAGCCTCCGGGCCCAGCCGGGCCTCCCAGCCCTGCCGGGGTGTC

>NZ_CP040244|16|13|7329130-7329275|CRISPRCasFinder
CCGGGGCCTCCCAGCCCTGCCGGGCTGTC	CGGGCCTCGCCGGGGATCTCCCAGCACTGCGTT
GCCGAGCCTCCGGGCCTCGCCGGGGATCT	CCCAGCCTGCCGAGCCTCCGGGCCCA
GCCGGGCCTCCCAGCCCTGCCGGGGTGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137994323.1\|7321255_7321591_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319911
NZ_CP040244.1\|WP_137994329.1\|7330074_7330500_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP040244.1\|WP_137994331.1\|7331603_7332041_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP040244.1\|WP_137994330.1\|7330612_7331593_-\|folate-binding-protein-YgfZ	unknown	unknown	gnl\|CDD\|223431
NZ_CP040244.1\|WP_137995190.1\|7325161_7325995_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367243
NZ_CP040244.1\|WP_137994326.1\|7326981_7327728_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP040244.1\|WP_137995189.1\|7321850_7324175_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|223256
NZ_CP040244.1\|WP_137994320.1\|7316100_7319271_+\|AfsR/SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226418
NZ_CP040244.1\|WP_137994324.1\|7324296_7324920_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|334719
NZ_CP040244.1\|WP_137994333.1\|7334110_7334209_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994332.1\|7333509_7334082_-\|FABP-family-protein	unknown	unknown	gnl\|CDD\|378046
NZ_CP040244.1\|WP_137994328.1\|7329353_7329947_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994322.1\|7320042_7321014_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|130256
NZ_CP040244.1\|WP_137995194.1\|7336102_7336834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137995191.1\|7332302_7333475_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP040244.1\|WP_137995192.1\|7334310_7335231_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994321.1\|7319251_7320046_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|366444
NZ_CP040244.1\|WP_137995193.1\|7335251_7336052_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994327.1\|7327791_7329039_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|234945
NZ_CP040244.1\|WP_137994325.1\|7326062_7326989_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|130256

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137994323.1\|7321255_7321591_+\|glyoxalase	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	4.22208e-16
NZ_CP040244.1\|WP_137994329.1\|7330074_7330500_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	9.78794e-79
NZ_CP040244.1\|WP_137994331.1\|7331603_7332041_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.27364e-33
NZ_CP040244.1\|WP_137994330.1\|7330612_7331593_-\|folate-binding-protein-YgfZ	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	1.36928e-52
NZ_CP040244.1\|WP_137995190.1\|7325161_7325995_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|367243	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain.	2.52332e-13
NZ_CP040244.1\|WP_137994326.1\|7326981_7327728_+\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	2.79222e-15
NZ_CP040244.1\|WP_137995189.1\|7321850_7324175_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
NZ_CP040244.1\|WP_137994320.1\|7316100_7319271_+\|AfsR/SARP-family-transcriptional-regulator	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	1.65224e-38
NZ_CP040244.1\|WP_137994324.1\|7324296_7324920_+\|dihydrofolate-reductase	gnl\|CDD\|334719	pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C-terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.	6.32435e-22
NZ_CP040244.1\|WP_137994332.1\|7333509_7334082_-\|FABP-family-protein	gnl\|CDD\|378046	pfam08768, DUF1794, Domain of unknown function (DUF1794). This domain forms a beta barrel structure but the function is unknown. The GO annotation for this protein indicates that the protein has a function in nematode larval development and has a positive regulation on growth rate.	6.36936e-63
NZ_CP040244.1\|WP_137995191.1\|7332302_7333475_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.41776e-20
NZ_CP040244.1\|WP_137994322.1\|7320042_7321014_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	7.03659e-107
NZ_CP040244.1\|WP_137994321.1\|7319251_7320046_-\|ABC-transporter-permease	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	1.84632e-15
NZ_CP040244.1\|WP_137994327.1\|7327791_7329039_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|234945	PRK01346, PRK01346, enhanced intracellular survival protein Eis.	5.11857e-142
NZ_CP040244.1\|WP_137994325.1\|7326062_7326989_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	5.56205e-111

>NZ_CP040244.1|WP_137994327.1|7327791_7329039_-|GNAT-family-N-acetyltransferase
MGLEVRGVGESEYREWLRAIHAGFLRPPVVSDEEVADRLPHTDLSRLLGVFDEGRFVATFRSFTQDVSTVGGGSLVADAVSGVTVAPTHRRRGLLSRMMARDLGAAKERGDAVATLIAAEYPIYGRYGFGPATWTSEWTVDVARAGLDQRRTGRPEDGGRIDFADGEEIRKIGPGLHRRLAGERAGVVGRDAHRWDVGTGLGYQSHPWTEPFYAVYRDEAGRPQGFAAYTCDDTWGDGKQPLNTAKVRDLIAVTPAAERALWTFLCSIDWVTTVKSGHRAPDDLLPLLLPDPRAARITSHADMLWVRVLDVVKVLESRTYAASGSLVLDVRDADGLAGGRYRLDASPEGAACSRTATESADLAFDIAELGTLSLGDESAVRLAALGRVEEVTAGAAARADALLRTSRRPWCPDIF
>NZ_CP040244.1|WP_137994326.1|7326981_7327728_+|ABC-transporter-permease
MSSAALTMTGRGIRLGRRNVDAVITSMMLPVMLMLVFVYFFGGAIDTGTRYVTYVVPGVLVLCSGFGSAGTAVAVSEDMKGGIIDRFRSLDIGGTPILAGHVGASVARNLVATALVFGVAFLIGFRPSATPLGWLAAIGLLVAFITAISWLAAAAGLLTRTPEAAGGITFFMMFLPYPSSAFVPIETMPGWLHGFAENQPVTPLIESLRGLLLDQPVGTTPWIALAWCAALLAVGVAASGTLFRLRTA
>NZ_CP040244.1|WP_137994325.1|7326062_7326989_+|ATP-binding-cassette-domain-containing-protein
MPPAIEATGLRKAYGNLPVLDSLDLRVEQGTVFALLGPNGAGKTTTVRILATLTAPDAGHARVAGHDIVTERSRVRRAISLTGQFAAVDEMQTGAENLRMMARLSGLPRAAATRRAAELLERFGLTDAGRRLAKTYSGGMRRRLDLAAGLVRDAEVIFLDEPTTGLDPRSRQELWQIVRHLAENGTSVFLTTQYLEEADRLADRIAVMDSGRIVAEGTADALKSRVAGHRLDLVLHDQEAYLRLSDRAVHHSPESLTLGIPTDGSAVHVRALLDELDPERRDIARFSLHTATLDDVFLALTDKEPAHV
>NZ_CP040244.1|WP_137995190.1|7325161_7325995_-|TetR/AcrR-family-transcriptional-regulator
MPYALLCKGYALLGWPSSEEGRSVVVDGREKGGGSFLPPSIEAAWGLRERPSKGPKPGLTLDRIVDAAVGVASAEGLDAVSMGRIAKELGVSTMSLYRYVGAKSELYVLMQDAATGAPPELFPPGTGWREAMERWSWALREVYHRHLWLVRVPISGPPATPHAVAWWEKAMVALADTDLDEGTKISVTLLVGGFVKSDAMMSADLAAAIDASGQEPGVVLARYSHTLRRLADPARFPAVARMLDSGVLDQADGPDDEFRFGLARILDGVALLVEGRK
>NZ_CP040244.1|WP_137994324.1|7324296_7324920_+|dihydrofolate-reductase
MRIVVSEFISLDGIVQAPGGPEEDTDGGFAHGGWTHPFFDPEVVGGAFDEAMSKADALLFGRRTWQTMAGAWPERAGDPFADRMNALPKYVVSRTLGDGDELTWNNTTRIPGEDAVARIRELREAAGGDMVVMGSPTLVRTLLSEGLVDELRLIVMPVLLGGGKSIFPQDGGLHTLDLISTVTSDAGVNVCTYRPRPAATPDQPSAS
>NZ_CP040244.1|WP_137995189.1|7321850_7324175_+|excinuclease-ABC-subunit-UvrA
MIRVHGARVNNLKDITLEIPKRRLTVFTGVSGSGKSSLVFDTIAAESQRLINETYSAFVQGFMPTLARPDVDVLDGLTTAISVDQQRLGADPRSTVGTATDANAMLRILFSRLGKPHIGPPSAYAFNVPSVRASGAITVERGAKKTVKATFSRTGGMCARCEGRGTVSYLDLAQLYDDSKSLNEGAITVPGYKGGGWNSRLYSESGFVDPDKPIAKYTKKELHDFLHREPTRMKIAGINMTYEGLIPRIQKSMLSKDKEGMQPHIREFVERAVTFTTCPECDGTRLSEGARASKIKRISIADACAMQISDLATWVRGLDEPSVAPLLTALGQTLDSFVEIGLGYLSLDRPSGTLSGGEAQRVKMIRHLGSSLTDVTYVFDEPTIGLHPHDIQRMNDLLLRLRDKGNTVLVVEHKPEAITIADHVVDLGPGAGTAGGTVCFEGTVEELRASGTVTGRHFDDRAALKETVRKPTGTLEIRGATEHNLRSVDVDIPLGVLCVVTGVAGSGKSSLVHGSIPSGAGVVSVDQGAIKGSRRSNPATYTGLLDPIRKAFAKVNGVKPALFSANSEGACPTCNGAGVIYTDLAMMAGVATTCEDCEGKRFQASVLEYHLGGRDISEVLAMPVNEAEKFFGAGEAHTPAAHRILDRLADVGLGYLTLGQPLTTLSGGERQRLKLATHMADKGGVYVLDEPTTGLHLADVEQLLGLLDRLVDSGKSVIVVEHHQAVMAHADWIIDLGPGAGHDGGRIVFEGTPADLVATRDTLTGEHLAAYVGA
>NZ_CP040244.1|WP_137994323.1|7321255_7321591_+|glyoxalase
MIKTVLHPVSDLAKATEVYAALLGVAPQAEGPYYVGFEADGQHIGLVPGGGPQGMTSPVAYWHVPDIEAKLAEVTAAGATVKEQPHDVGGGRLVATVTDPDGNVLGLIQDQ
>NZ_CP040244.1|WP_137994322.1|7320042_7321014_-|ATP-binding-cassette-domain-containing-protein
MTTTTSHSLAIAAKGLRKSYGDKTVLDGIDLAVPAGTVFSLLGPNGAGKTTAVKILSTLITADAGDLHVGGHDLATAPQAVRAAIGVTGQFSAVDGLITGQENMLLMADLHLLPRGEGRRRAAELLERFDLTEAASKPVSTYSGGMKRRLDIAMTLVGNPRIIFLDEPTTGLDPRSRHNMWQIIRELVTGGVTVFLTTQYLEEADELADRIAVLNDGKIAAEGTAEELKRLIPGGHVRLRFTDPNDYQRAAVALREATRDDEALALQIPSDGSQRELRSILDWLDTAGIEADELTVHTPDLDDVFFALTGSTHVPSQSKETAR
>NZ_CP040244.1|WP_137994321.1|7319251_7320046_-|ABC-transporter-permease
MNAFSLAVRNSNTMLRRNLLHARRYPSMTLNLLLTPIMLLLLFVYIFGDVMSAGIGGGGVADRSAYIAYIVPGLLMMTIGSTVIGAAISVSMDMTEGLIARFRTMALHRGSVLIGHVAGSVLQVLASLVLVSAVAVAMGFRSTDATALEWLAAFGLLALFTLALTWIAVGMGMASPNPEAASNMAMPLILLPLISSAFIPADTMPGWFQPIAEYQPFTPAIETLRGLLLGTEIGNNGWIAIAWCVGLTALGYRWSTALFNRDPK
>NZ_CP040244.1|WP_137994320.1|7316100_7319271_+|AfsR/SARP-family-transcriptional-regulator
MTTDLTLLPRVAYRGQEVTAPRLRGLLALLASDLRTGCGSERLVAGLWPDALPERPGKAVQVLVSRARALLGADVIASTPTGYRLALAEDQVDSSALLLHAATSADRARAGDHAGSLAAAEAGLALWEGTPDGPGGPGGPGGTTDPVAALRTERAPVRGTLARARALALARLGRHAEAAGPLAAAASEHPRDEEVLAELLRGEAATTGPSAALMRYEAYRRELRDELGTDPGAALKAVQRELLRGEAPAVRHGVPHEPNPLLGRDEDIAAVERLLRASRAVTLVGPGGLGKTRLAHAVSRRAEQRVVYFVPLAGVTADEDVAAEVASALGAGEGRPSAVSGHAAADPVSGILGVLGSGPALLALDNCEQVVRGAADLVQALVSSSRDLRVLTTSRAPLGLTSEAVYALPELGPATSAELFTQRARAARPGVELPPDAVAELCRHLDGLPLALELAAARVRVLSVPEIARRLGDRFALLRGGVRDVPERHRTLHAVVDWSWNLLDEDARAALRMLSVFPGGFSGEAAEQVLGEDALFLLEQLAGQSLITVADTPAGMRFRMLETIREFSAARRAEAGEDEEAVGRFLAWARDFGIAHHDWFFGSGPLSAWERIRAEQDNLVLALRHALARTDGPTTAALTAVLAALWSTGSNYPRLVALAAETGPPLSHYHPEPEHVEVARAAAVLCTASLFMGYGPHVVRQLVTLRRLPPAPPDTLLRAIATVLSAVPEMLPPDYDVLRGLCDSEQPLLAGIAECVATYVWESEHDIDRALASARRIIAALAPVDNPFLQVMGHARLSELYLQTEQGEAAYGHLKAALQALQALPRLGDEHDFIGVRWSLVLACLQRGDPDEAEYWLRQAAGANTSQQDDHSMDLLGRAEIALARGLTEVGLGLWRSAVQPLPAADSTHGGDPFLDRWVLQILAVAVTAHAHAGRLELVAEPVDRLRQGLRTLLSGPSGSPMEFPVFGTVLHALGMAGLASGDTGAVRMIALAERLRVLRDFQPTMSADRARQAVGAAGNAARAAYADAVSEYAALERDELREAARAVMAVTSGRG
>NZ_CP040244.1|WP_137994328.1|7329353_7329947_-|ABC-transporter-substrate-binding-protein
MSAPGAGQTPSGPVPLTRVGATVRPPVQRRAEPALPARPQPDIAALRLPELRALRRDAQGDEADLSYVRRMLQGRIDILRAELARRTDPETPVLDRLSEILADAPSRLRTSARHVTLSTPRSEEYRRLASEMLSEVELSDLGARTDEELHAAMGRLAGYEQQMSRRRQELQRTADDCSAEIARRYREGEAQVDDLLT
>NZ_CP040244.1|WP_137994329.1|7330074_7330500_+|D-tyrosyl-tRNA(Tyr)-deacylase
MRAVVQRVDGANVVVAGETVGEIVGEGLCVLVGVTHEDTPEKAAQLARKLWSVRILEGEKSCSDVNAPLLVISQFTLYGDARKGRRPTWNAAAPGPVAEPLVDEVVTQLRALGAHVETGRFGASMRVSLTNHGPFTVLIEV
>NZ_CP040244.1|WP_137994330.1|7330612_7331593_-|folate-binding-protein-YgfZ
MQRHSTHSPLLSLPGAVPAEGRDEGVAAHYGDLFREQRTLAAGEGFVDLSHRGVVTVSGDDRLSWLHLLLTQHVSELPAGQATEALILSANGHIEHALYLVDDGETVWAHVEPGTREELIAYLESMKFFYRVEVADRTDDFAVVHLPAGSIAEVPKGVVVRETPHGRDLFLPRGDLESFAADHGPAAGMLAYEALRIEAHRPRLGFETDHRTIPHELGWIGSAVHLQKGCYRGQETVARVHNLGKPPRRLVFLHLDGSEVHLPGHGTPIRLAADGADGRQLGFITTSGRHHELGPIALALVKRNVPVDAELMAGDTAAAQETVVEP
>NZ_CP040244.1|WP_137994331.1|7331603_7332041_-|transcriptional-repressor
MVSTDWKSDLRQRGYRLTPQRQLVLEAVDALEHATPDDILGEVRKTASGVNISTVYRTLELLEELGLVSHAHLGHGAPTYHLADRHHHLHLVCRDCSNVIEADVDIASEFTGKLRETFGFETDMKHFAIFGRCQDCSKKADGTQS
>NZ_CP040244.1|WP_137995191.1|7332302_7333475_+|transposase
MWNLLHEWWAMLPKERRSPAAADAAIRQARKEIDWLSVLPAQAAQAVLKTYFQAWKNCWAGRADEPNFKARCRMVMSVDVPQGRDLHITRVHRRWGMVGLPKIGRVRFRWTKDLPVGKRADADTRITGARLAKDALGWHIAFRLQTYEPAPEPHTGPEVGIDVGISVPLALSDGTTYDHREWLTEKERATLLRLEQKAARRKTYRRRGEKTSRRLRRTYDRIQELRARAKRRHLDWQHKTTTDIARKYSTVVVEALKITNTTRSAKGTVDSPGKKVAQKSGLNRSIHAEAWGRTVELLTYKTSRHGGTLVKVPAPGTSRRCSACGHTTPGSRESQALFVCKNPDCGWTGNADHNAGRNILHLYRMGLALIPAAGRAVARRARRVKPTTAR
>NZ_CP040244.1|WP_137994332.1|7333509_7334082_-|FABP-family-protein
MIEIPSDLNPDLVPLAFLLGTWEGAGVADFPGAEKCNFGQSVTFSHDGRDFIEYRSHSWVLDNDGNQIRPLESESGYWRIDKDRKVETVMVRDQGIVEIWYGELADKKPQIDLVTDAVARTAASGPYSGGKRLYGYVKGDLMWVGEKATPEVPLRPYMSAHLKKVVTPEEVAEMARGLGDLPDDGIAFFK
>NZ_CP040244.1|WP_137994333.1|7334110_7334209_-|hypothetical-protein
MIIFFEALLALVCVGVLAFTGLAVKKLYQGQR
>NZ_CP040244.1|WP_137995192.1|7334310_7335231_-|hypothetical-protein
MPEQSPAPAAESVPAASAVPPVMPDQPDQPDQPDQPDQADQAVRQTVDPEQPKPKRSRRPLLWAVARWTAAVLVCGGIGTGTALQITSMERTDVPGLATESDGRWAYPKLSLPALPAGVPRPYTEGNDGEIHHADLRKLLLPAPAGATPDPKLDGGWVDVEQFLSQYRKDDRTELSDPLAESALRHIAARGWTMPDGTTTRIHLLRFNSVAFAEAFKDDAVQADSTDGPVLDGVEGAEADGEFPTAIRVPFTVSYPFVELPHDDEQTRWAYIQAGDTLALVTQSRKGEALTVPFQQTVALQNQLLG
>NZ_CP040244.1|WP_137995193.1|7335251_7336052_-|hypothetical-protein
MFAATVPPEEPKKRGRGRKLLTVALPAVLVLGVIGGGVTYTAVIVASADRSAPTVPWEQTDMTARDEDPALRALRGKASTPLSKLLLPAPEGYELGPDVESYGNDSELGEKEALALLKQEGKGLSGKKRRAYEKRVEKVGIKGIAVRSFASQDGDTVVYIRVTQMKDKKRIREMFELRKELFELFEFPKGPKIGGHKNSACYMAPEAKDLDKEEKADQLEEMRCTAYDSEVEVTVTVAGSKPFDRSAVADLVKKQLDHIESPGEYV
>NZ_CP040244.1|WP_137995194.1|7336102_7336834_-|hypothetical-protein
MPARRRRGGRAVALIAAAAVLGIVGGTAVGYGIQAEREPTPLPALNQPALAYPKPLPEGQAPKPLPASEDRKAKTDGDLRKLLLPKPAGAQKPEFADADGWMTVPQYVGYFNHPRRALNYQLESRIRRVATTSWRTGTYRTTSIRLVQYRPSDMLGAQDHAENQMDYMPDEDYARSEGDPIKGSANGRYYVFPVKREAGYLDHYQARAYFYRGDIMVEIFISDTKKISKKDISSVAERQLGRL

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Crispr_ID: NZ_CP040244_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040244_17

7472061-7472216

Orphan

Consensus_repeat	Method
GGTCGGCGGTCGCGTCGG	CRT

3 spacers

The CRISPR arrays of NZ_CP040244_17

>merge|NZ_CP040244|17|7472061-7472216|CRT
GGTCGGCGGTCGCGTCGGCCTGCCGGTCGGTGTGGTGGTCGGCGTCCTGGTCGGCGGTCGCGTCGGTGTGGTGGTCGGCGCCCTGGTCGGCGGTCGCGTCGGTGTGGTGGTCGGCAGTGTGGTGGTCGCCGTTCCCGTCGGCGTCCAGCGCGTCGG

>NZ_CP040244|17|4|7472061-7472216|CRT
GGTCGGCGGTCGCGTCGG	CCTGCCGGTCGGTGTGGTGGTCGGCGTCCT
GGTCGGCGGTCGCGTCGG	TGTGGTGGTCGGCGCCCT
GGTCGGCGGTCGCGTCGG	TGTGGTGGTCGGCAGTGTGGTGGTCGCCGTTCCCGT
CGGCGTCCAGCGCGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040244.1\|WP_137995207.1\|7473383_7474457_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP040244.1\|WP_137994422.1\|7464685_7465108_+\|PIN-domain-nuclease	unknown	unknown	gnl\|CDD\|350322
NZ_CP040244.1\|WP_137994420.1\|7459275_7461354_-\|DNA-polymerase-III-subunit-gamma-and-tau	unknown	unknown	gnl\|CDD\|236090
NZ_CP040244.1\|WP_137994431.1\|7483149_7484205_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381313
NZ_CP040244.1\|WP_137994424.1\|7468427_7469627_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040244.1\|WP_137994428.1\|7476143_7476803_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP040244.1\|WP_137995208.1\|7476820_7479082_+\|FtsX-like-permease-family-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994423.1\|7465991_7468262_+\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP040244.1\|WP_137994426.1\|7474513_7475299_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319947
NZ_CP040244.1\|WP_137994430.1\|7481969_7483022_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197713
NZ_CP040244.1\|WP_137995209.1\|7479091_7480420_-\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CP040244.1\|WP_137994427.1\|7475696_7476110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994429.1\|7480542_7481880_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP040244.1\|WP_079428878.1\|7464473_7464689_+\|antitoxin	unknown	unknown	gnl\|CDD\|378324
NZ_CP040244.1\|WP_137994418.1\|7455826_7457746_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|320687
NZ_CP040244.1\|WP_137994416.1\|7453150_7454050_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_CP040244.1\|WP_137994432.1\|7484314_7485514_+\|winged-helix-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377630
NZ_CP040244.1\|WP_137994417.1\|7454172_7455633_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	unknown
NZ_CP040244.1\|WP_137994421.1\|7461981_7464408_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379300
NZ_CP040244.1\|WP_137994419.1\|7457963_7459214_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856

Protein	Function_ID	Function_description	E-value
NZ_CP040244.1\|WP_137995207.1\|7473383_7474457_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	4.68246e-07
NZ_CP040244.1\|WP_137994422.1\|7464685_7465108_+\|PIN-domain-nuclease	gnl\|CDD\|350322	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC3 and VapC21 toxins. It belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is a PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.79159e-57
NZ_CP040244.1\|WP_137994429.1\|7480542_7481880_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.25013e-53
NZ_CP040244.1\|WP_137994431.1\|7483149_7484205_+\|aldo/keto-reductase	gnl\|CDD\|381313	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B, AKR12C families of aldo-keto reductase (AKR). Streptomyces fradiae TylCII, Saccharopolyspora erythraea EryBII, and Streptomyces avermitilis aveBVIII are founding members of aldo-keto reductase family 12 member A1 (AKR12A1), B1 (AKR12B1), and C1(AKR12C1), respectively. TylCII acts as a NDP-hexose 2,3-enoyl reductase. EryBII is a mycarose/desosamine reductase involved in L-mycarose and D-desosamine production. aveBVIII functions as a dTDP-4-keto-6-deoxy-L-hexose-2,3-reductase.	4.77109e-148
NZ_CP040244.1\|WP_137994424.1\|7468427_7469627_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.28579e-110
NZ_CP040244.1\|WP_137994428.1\|7476143_7476803_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.79993e-89
NZ_CP040244.1\|WP_137994420.1\|7459275_7461354_-\|DNA-polymerase-III-subunit-gamma-and-tau	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP040244.1\|WP_137994426.1\|7474513_7475299_+\|glyoxalase	gnl\|CDD\|319947	cd08359, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	8.80098e-23
NZ_CP040244.1\|WP_137995209.1\|7479091_7480420_-\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	1.30346e-73
NZ_CP040244.1\|WP_137994430.1\|7481969_7483022_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	2.47474e-09
NZ_CP040244.1\|WP_079428878.1\|7464473_7464689_+\|antitoxin	gnl\|CDD\|378324	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB. VapB is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is VapC, pfam05016. The family contains several related antitoxins from Cyanobacteria and Actinobacterial families. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the Toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all antitoxins.	4.64904e-06
NZ_CP040244.1\|WP_137994418.1\|7455826_7457746_-\|hypothetical-protein	gnl\|CDD\|320687	cd07328, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi.	1.01329e-07
NZ_CP040244.1\|WP_137994423.1\|7465991_7468262_+\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	3.42542e-07
NZ_CP040244.1\|WP_137994432.1\|7484314_7485514_+\|winged-helix-DNA-binding-domain-containing-protein	gnl\|CDD\|377630	pfam06224, HTH_42, Winged helix DNA-binding domain. This family contains two copies of a winged helix domain.	2.44638e-52
NZ_CP040244.1\|WP_137994416.1\|7453150_7454050_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_CP040244.1\|WP_137994421.1\|7461981_7464408_+\|hypothetical-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	4.45886e-29
NZ_CP040244.1\|WP_137994419.1\|7457963_7459214_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0

>NZ_CP040244.1|WP_137994424.1|7468427_7469627_+|protein-kinase
MQGTRVGDRYRLIDLVGTGGMGQVWRAYDERLGREVAVKTLTAGEYGGPDPGAMARFEREARVVARLDSEHVVTLHDIGAAEVDGRSLLFIVMELLGGQPLDHIIQQGPPSPHDVASWGSQVCDGLATAHAAGVLHRDIKPANIMVTSRGVAKILDFGIAAFLDNASPHTTLTAAGTVLGTPAYMSPEQAQAVPADHRSDLYSLGCVLYALVTGQPPFAAGSGVALLVKHVTEVPVPPSRRRPDLPGGWDELILALLEKHPSHRPQSAVEVRDRLRGMGTSHPGLFAAPDGDKDADEGADEDADEDADEGADEDADEDDVDDLDLLCRAAELVVSTQFGSTSMVQRKLRVGFAKAGRLMELMEARSIVGPGEGSRSRDVLVRPDELDGVLAVIRGESGR
>NZ_CP040244.1|WP_137994423.1|7465991_7468262_+|VCBS-repeat-containing-protein
MAARAPADTSSCADLGPGLAVTALGAGTLATAPAAFAAGSVSVSGSASGSASGLASGSASAEQAAALPGFPEGSNLAGVGTTGFLTHSFENATRNLLWTPYDGGAPTRLHPPEDGGFTMAGTDVVVLGDANFISEMRSLTLRNMADPSAPGVDIDLGALGANYVAVVSPTSVLAQVTKDDGTAELHVVSKDGATTTSRKVSGLPADATDFFTSTPVQGGVAFVGYETGPAAARTGGRAVIDVANGTVSETYASAESGYGFSNLMSSGSHVAWLEWKSGTGLFVTSVDRTTREAKQTVLGTRDSEWYTEIVGGWLVYGNPSTPVRAISLTSGETRDLADQASGSAAANDGSAVVNGSRAADGDGLFRIAAAAEDGTPTVTKVAETGQMAVGLEIEQVHVPDVAELDKTGGKVTLGWTLSRPEAYLDLTLTHTDTGKEFRTRVNAPAPGTLFSYTWDGVSGGVDATNGRYAVEAEATPLDGIGEPAYQGWLMTVVRTSNPHDYTDTGSTDVLARDASGVLWRDDLLDRPVNGQVKPAQRTRIGAGWQTYKQIEAVGNIAGDEVGDLVGLDGSGYLWHYLGKGDGTFAPRARVGGGWGIYDKLTGGSDLDGDGRADLLATDTAGVLWFYKGTGSATAPFAPRVKTGWGWGIYNQITAAGNIAGTAAGDLVARDKDGVLWLYQGNGGGTFSTRVRIGAGWGVFSQLVGAGDLDNDGRPDLIAYGAGGTYVYRSTGSTTAPFSRQSTSLYAGEGSTFNHIA
>NZ_CP040244.1|WP_137994422.1|7464685_7465108_+|PIN-domain-nuclease
MNAALYLIDTSALARFMRGDAEQYGWDQAAAAGLIATCPITELEFFYSARSAADRARGIEDIRLIFGWVPVDDRAYDRAWQVQEALTKQGKHRSAGAVDLVVAATAELQGLTLLHCDHDFECIAAVTGQPLQWYGPEGRK
>NZ_CP040244.1|WP_079428878.1|7464473_7464689_+|antitoxin
MSRTVIDLDDELVADVAKALGTSTKKETVNTALREVLENRRRALALTRLRAAADEGAFDLTLFEDKRNYRR
>NZ_CP040244.1|WP_137994421.1|7461981_7464408_+|hypothetical-protein
MKSRSTLATWLDGLDGCRLARVLETRRDAASPPEPRSVGELADRLQRPGSVALALPQLALPHLQVAEALAALGAPASRDALAELLEAADGEAARELDAALEALADHALVWPDGAGKLRMAGPLRQAWDAPLGLDAPLEELLTGTTSDELRGMLAALGVKPPGSKAQRLAALMEHHGDPERILSVVATAPAATRKLLEGRAGAGPARPARFIMFGSPGPDLEPGARWALERGLLVQDRHRYGPARMPAEVALALRGPGWHAPFQAVPPSVGLAPVTPREVDREASAVASAFAAGAASVLSACSATAPARLKSGGIGARELARIGKAAQADDTVVRLTLETAYAAGLLARDCDRVAPTEAYDAWAAQEPPEQFAVLLQAWWNLPLTPTQARDEDNKALPALGGAPPCNGCVQARHGLLASAARLPTGQGVRVASDLGPLVAWHRPLADSSPDGTPFATVIQEAELLGVLARGALSAFGIHLWTGDAERLGIECRRLLPSAAATARIGADLTAVVTGTPSARLASLLDSVADRETNGTASVWRFSPGSVRRALDAGRTPEDITADLAAVAAEPLPQPLSYLITDTARSHGRVRIAPAACVLHGDEPALLAELAAHRKLAKLGLRQLAPTVLISRSPLDATLAALRAEGYAPVAETDEGTVRIEKTRPRRAAACVPAPRGSRARGGGRTAAPSMAKGSAAFDPSALATRLLAAPATAPEPAPFEGGVPFATDTEEIVAGWAKRLPYTDVRQLAHAIDAAHAIAVEYVAASGNRTVRTLSRLELDPPYLEAWCHLREDERVFTLSRIHGVMPT
>NZ_CP040244.1|WP_137994420.1|7459275_7461354_-|DNA-polymerase-III-subunit-gamma-and-tau
MSSLALYRRYRPESFAEVIGQEHVTDPLQQALRNNRVNHAYLFSGPRGCGKTTSARILARCLNCEQGPTPTPCGECQSCRDLARNGPGSIDVIEIDAASHGGVDDARDLREKAFFGPASSRYKIYIIDEAHMVTSAGFNALLKVVEEPPEHLKFIFATTEPEKVIGTIRSRTHHYPFRLVPPGTLREYLGEVCGREGIPVEDGVLPLVVRAGAGSVRDSMSVMDQLLAGAAEDGVTYAMATSLLGYTDGSLLDSVVDAFAAGDGAAAFEVVDRVIEGGNDPRRFVADLLERLRDLVILAAVPDAAEKGLIDAPVDVVERMQAQASVFGAAELSRAADLVNSGLTEMRGATSPRLQLELICARVLLPAAFDDERSLQARIDRLERGAAAAPAPVFTTGSPAPAMGYVPGPEAHTPMAPPPPPPAPVQPTPTPAPAPAPAQPTPAAEGPRPGAWPGAATPGAPAPGAWPGASAPAAPAPQAPAPAQAAPAQPAPVAPAGDMAQGAAQVRNMWPSILEAVKNRRRFTWILLSQNAQVAGFDGTTLQLGFLNAGARDNFASSGSEDVLRQALAEQFNVQWKIEAIIDPSGGATPPPAAANFGGRPAASAPAPSFQQAPPPAQAPAPTPAQAPPTPRPQASAAAPAPVEAPPQRRPVAPEDDVPEEDDPDLVDSALSGHELIVRELGATVVEEYTNE
>NZ_CP040244.1|WP_137994419.1|7457963_7459214_-|phosphoribosylamine--glycine-ligase
MKVLVIGGGAREHALCRSLSLDPDVTALHCAPGNAGIAEVAELHPVDQLDGAAVAGLATSLEADLVVVGPEAPLVAGVADAVRAAGIPCFGPSEQAAQLEGSKAFAKDVMAGANVPTARSYVCTTAEEIDEALDAFGAPYVVKDDGLAAGKGVVVTSDLAEARAHALACGRVVIEEYLDGPEVSLFAITDGVTVLPLQPAQDFKRALDGDEGPNTGGMGAYSPLPWADPKLVDEVMDTVLQPTVDELRRRGTPFSGLLYAGLAITSRGVRVIEFNARFGDPETQVVLARLRTPLASVLLNAANGTLDNEPPLNWREDAAVTVVVASHNYPGTPRTGDPIEGLDEVAAQNAPHAYVLHAGTKRDGDAIVSAGGRVLSVTATGEDLAQARERAYKAVGRIRLDGSQHRTDIARKAAGE
>NZ_CP040244.1|WP_137994418.1|7455826_7457746_-|hypothetical-protein
MYGVSGTGSVVGEEMGARAARTRALAVLRVRGRALGLALLPAAAAVILYAGGGTGRFTGAGWDAARWVTTALALVVLLATAAVALVVARARPAVTPTVELSETAAPDLYRLVRDLADRLGVPAPSAIALTPDCDSWLEDRTHPAHGTTQGLRRSADAPVLVIGSPFLWWMRVGELRAVLAPVVAGTAPAAQPDIAAARRFVQGLDAAVAVPRRAGLDPVSRLGAHAIGRVARVLLRLCRGHAAEMERGVAAAGSERAQAVDYGVRIVAQEQVGLAYAGWDRLLTRVALPAWRMGRWPARLDAGVVSALTELSRRDRLAEGFASRLGERPACDLLEEPGAVDEAASLLAARLFHGGPAESGPDWSPVDWNQYPEEVVDRKWRSDAARLHQVLDDLGVLPTGSASADGPTGPTLTRVMSHLSTRPPEAIAPDTIAPQAIAPDTIAPDTIAPEAIAPEAIAPEAIAPDTTAPQAPPEAPAPDGVPEDQDVPDAPDDQDPHAPGEHDGPEPSAPHPAADTLAAALTARVAREEAAKPAAPVPAPHAATLGADTLPLFPLQPPRTGRDLLADHVTAMVCCAAVDTAGAAPGLDWLDGPALLVGGERNTDLTARVLALVEDGDPVPLRAWLTETGVRPEKPVRLV
>NZ_CP040244.1|WP_137994417.1|7454172_7455633_-|phosphoribosylamine--glycine-ligase
MGAEQIRRWESGALAHAVSDPFGQGPLPWLRGSENYFDDTGQVVPWYADETLARGGSGGPRTADDVRSQIKGFASNGAVAPGEAIDFHITVDPPQQFSVDIYRIGHYGGEGATKITTSPRLSGIVQPAPLTADRTVSCHHWWQSWRLQIPTLWSIGAYVAVLTTADGYRSHIPFTVRDNHPADLLLVLPDVTWQAYNLYPEDGRTGASLYHAWDEQGRLLGEEDAAITVSFDRPYAGAGLPLHVGHAYDFIRWAERYGYDLAYAETRDLHAGRVDPTRYRGLVFPGHDEYWSVPMRRTVELAREQGTSLVFLSANTLYWQVELGPSPSGVPDRLLTCRKRRGPGRPALWREIDRPEQQLLGIQYAGRVPESHPLVVRNADHWLWEATGAGDGDEIPGLVAGEADRYFPRTALPEHQGRILLAHSPYQDGEGALRHQETSLYRAPSGAWVFASGTFAWSPALDRPGHVDPRIQRATANLLDRICKRD
>NZ_CP040244.1|WP_137994416.1|7453150_7454050_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MSGFVEKPEPVQVPGLTHLHTGKVRELYQNEAGDLVMVASDRMSAYDWVLPTEIPDKGRVLTKLSLWWFDRLSDLVPNHVISTDVPAGAPADWEGRTLICKSLQMVPVECVARGYLTGSGLLEYNESRTVCGLALPEGLSDGSELPAPIFTPATKAAVGDHDENVSYEEVARQVGAETAALLRQTTLAVYGRARDIARDRGIILADTKFEFGFEGDTLILADEVLTPDSSRFWPVDQWQPGRAQPSYDKQFVRDWLTSPASGWDRRSEEPPPALPQEIVDATRAKYLEAYELLTGNTWS
>NZ_CP040244.1|WP_137995207.1|7473383_7474457_+|GNAT-family-N-acetyltransferase
MGVAALPEHVHVHVHVTPLHRVSVTDAAAWHQIVAASVTHDLPGTPPPGPGQIHAQLTQPGLDSQRLTWLAHGPDGDAVGVAALRLFTAPGRDHVAELELHVDPAHRRRGTGSRLLSAVVAACRTENRRSLVAEIAADGPGEAFCDRWGFHRALTMNYLILRLDEQDEKEATRLREVAEAEHPGYRLTGWTGTVPDDLADAFAAAKSAMDDMPVGELDYGRVEWDADRVRAMAEVVAARGDTLLTVAAVHEDGTMAGYTEIVLPQGASTRGQTRGQTGVQTRVQQYDTAVVPAHRGHGLGLWVKAAMLRRLRAEHPGVSEIETDNAEDNVHMIAVNRQLGFRSCRRTHRYQLDLADA
>NZ_CP040244.1|WP_137994426.1|7474513_7475299_+|glyoxalase
MNVSASTLSLTVADVDATRDFLTTHLGYAVTMSGDGFASLARADAAADIVLLRRGTEVLPAEQRDQEASGLILALTVTDIEAEEARLRDAGAPITMALREEPWGERLFQVTDPNGVVFQLVEWATPADAEGGEGGEPALRVITPSPETVTATPNATMTGLAAPSRGSSELSTWTVAMEAGATGPEHAISREQVWTVTAGALEFTCAGHTEKVTAGGTAILPADLLRQIHAPETAEAHVTMRADGVASVPGTEGTRVLPWAE
>NZ_CP040244.1|WP_137994427.1|7475696_7476110_+|hypothetical-protein
MRKLATVAVATGLFLGGAGVAVADAWKSLGQMQTLGAELQDPEYRWWPKGQNHGGFNFRGRLKDLAPEDGHNVYVEVKVEGYSWNRFKGVQKKTIALDKVVYDGAAQYTKDADIRVCRDRGSLRPDNCTFPKSYRRN
>NZ_CP040244.1|WP_137994428.1|7476143_7476803_+|ABC-transporter-ATP-binding-protein
MNAVLRAEGVDLFYGTHQAVSGADFTLRRGEVAAVMGSSGSGKSSLLYCLAGVLAPAHGAVSFDGVAFSTLTDDELGTLRRERFGFVFQYGELLPELTVEENAALPLRLAGQRKAPAHAAAGEVLGRLGMTELLQRRTSQLSGGQSQRVAVARALVHRPDVVFADEPTGALDSVNAAAVLEEFLRLARDQGTAVVIVTHDATVAEHADSRYTMADGILK
>NZ_CP040244.1|WP_137995208.1|7476820_7479082_+|FtsX-like-permease-family-protein
MQLLWRGGRRGRARFLLMTFGCALGVACLAAVLSIPTILAAQDARSAARNPDQVVEVKRDLTEDDTVFLNRVHDDAYGSEPLRRVFIARATHGPTPVPPGVERLPAPGEVLVSPRLRRILAESPGVAGLLPGRVTETIGPEGLTGPDELFAYIGTRHDQISDPLLLHHFGGPYPPYTVVEESTLDILRFTLACVVLLPLSVFLSVCARLSAESRARRLAALRLVGLSVKDTLRVNAGETVAAAFLGALLGVGGYLIVNEIVARVGLPGLHWYPADGRPEATTLAVCLILCPALAWFVGRHSARAAALTPLNVRRTAERQPPRMHGMLLLVPGLGVIGGYCTLSVLGKDPSGGSANTLIVPAAVLLTGAGLVFGLPPITTWLARRLAGTARSLPLALAMRRAEVEPGASLRVVTGLVLLVFATSLTQGVLVELDQVSRRTAPVQEYAVPLSELTPQQSDRLKRVDGAKAYATTLSSWTPMDDTPIRPTLHGIIATCAQLAAFVEWSHGCVDGKVLRLYDLNSSMNADAVPGRSFPFVLKNRKLTLTVPREQMTVRAYQPSAFSGSDVLIPPSLARTDELSSGSELNLLSDADPQTVRTVLNGVGAIAPTAEIDPVGIVVESLAQLTVIRSLLGAGMVLGLVISVAAFVVSVADRAMERRGQVAALALLGARAATLRVVQCAQVVLPLGVGLGAAVVTGWLAESSYLITGGGAVHWDWSGLPLLLVCCLGVLLAAAAASLPLVRRHVDPEHIRRD
>NZ_CP040244.1|WP_137995209.1|7479091_7480420_-|DUF1254-domain-containing-protein
MAADAYVYGYPLVFDVSTVAAFLRKGFGPLPQAPFNTFSHATRLAAPDAHFVSVNNDTVYSIAQLDLSGGPLLLHVPDTAGAYHVLQFVDVWTDNFAYVGKRATGTGAGDWLIAPPGWAGTEPEGVSGVIDAPTSVVTIVGRNACDGPEDLPGVRALQEQLTLTPLDGAAHLHGLPSPDPDVPEPLRFFEQLRVWMADFPSSAPDQAYEARFQPLGLLEEGPSPYRDADPALVRALTEGLAAGKERVEAATRPPSAGEGPAGSWTTDPHLFDYNLDHFGVGTLSSPQWRMADREASYLARAAAARAGLWGNHGYESVYAATYTDSDGRQLNGAHAYVLRFDQPPPVEAFWSVTMYDTPDYYLVDNPIDRYSVGDRTPGLVYAEDGSLTLVLQHRRPEAPAEAANWLPTPEGDFRPIVRLYMPKTAVLDGSYRLPPIERRRTG
>NZ_CP040244.1|WP_137994429.1|7480542_7481880_-|MFS-transporter
MLSSFRGLPPTVWTVFAGTIVNRLGYLVTPFLVFFLAARGVTGTETSYVLGALGAGNLLGPALGGVLADRIGRRPTMLIGLLGASAAQGALFVAPGVWTMAVAALLVSASGALVGPAAYALMADAVDAERRRRAYALFGWGVNIGTAVAGVLGGFLAAHGYGLLFAIDAGTMLIYAVVVATRLSEPARPGKAAGAEAGETREPGKAAGDVTEDAAGGVTEDAAGDVTEDVTGDVTGDVTEDAAARDGIGYGVVFRDRLALALFPLFGVQLFVYSLTEVALPLAIHDSGLSPAVYGAMAAVNAILVVVLQPFATARLAGVPRMRVQVAGSVLIAAGVALTGLASGVFGFTVSVAVWSLGEVVVAGIAAAIVADLAPAHARGRYQGAFSWTWGVARFGALTLGVTVYTGLGPAFLWWAALVAGTLAAVGTAALAGRVTRRTEHALVA
>NZ_CP040244.1|WP_137994430.1|7481969_7483022_+|helix-turn-helix-transcriptional-regulator
MESELTFSTADLAQTRFRVSPMWEVVTSFRLLADDPPLHRRWAAQVRPRLARAGLDSGWLAALIPGTGYLADFLTPTPVTPFPTLAAELDAIRRTPPERVREDLATLDTKRSAGRTPSARLRLLHDAPEAALEKVVAEIECYWELALAPYWARIRRLLEADVFHRARQVAEHGSARVLGELHETVRWDDGTLRLVRRHCALTRDQTGSGLLLIPSAFAWPRVLTRSVPPGPPQLAYPARGSGNLWEPRTGTGTGTGTGTGASTGTGTGTGTEAVAAVIGRSRTLLLTELDTPASTTQLAAHCGMSAAGVSQHLTALRNAGLVTAHRSGRSVLYARTSVADALLAPSGELA
>NZ_CP040244.1|WP_137994431.1|7483149_7484205_+|aldo/keto-reductase
MRYRVLGGTGIEVSTYCLGAMMFGAVGNPDHDDSVRIIHAALDQGVNFVDTADMYSAGESEEIVGKALRDPRRRQDTVLATKVHFPMGEGRNRSGNSRYWITRAVEESLKRLGTDWIDLYQVHRPDHRTDVEETLAVLGDLQTQGKIRAFGCSTFPAEEIAEAHHVAERRGLRRFRTEQPPYSILARGVERSVLPTAQRYGMGVLTWSPLAAGFLTGKYRKGRPIDLTSGRAALAPHRFDPALPENAAKLDVVERLVALAEEVGCSLAELAMAFAAAHPAVTSVIIGPRTREQLDGLLKGASLVLDDEVLDRIDAIVPPGTDLYHPDAWSPVVLTDASLRRRPTPERAAAD
>NZ_CP040244.1|WP_137994432.1|7484314_7485514_+|winged-helix-DNA-binding-domain-containing-protein
MLGPMGVTKRVIGAEERRARLAVRHRLAGAERAATAEEVAQSLVALHATDPASVFLSVGARLKGGEGPVAGLERALYEDRTLTRMHGMRHTIFVFPTALTPAVHASTTRDVATRERAMLLKDLRKGSEYDEEWLAETERQVLAELALRGEATGTELGAAVPRLRAQYVYGLGTRQEGPQSVSSRLLRVLGMEGRIARGRPQGGWTSSRFRWTLLPERPDPSDADAHAQLVRQWLAACGPATEADLKWWTGWKVTDVRKALAAIGAVPVELAEGTGTGFVLPDDLEPVPAPEPWAALLPALDPTAMGWQARDWYTDPEHKAALYDRSGNIGPTVWWDGRVVGVWGLRPDGEIALRMLTDVGREARAAVDAEAARLRGWVGDVRVTPRFRTPLERELSDGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040244_1	1.1\|154408\|16\|NZ_CP040244\|PILER-CR	154408-154423	16	NZ_CP040244.1	154699-154714	0	1.0
NZ_CP040244_1	1.1\|154408\|16\|NZ_CP040244\|PILER-CR	154408-154423	16	NZ_CP040244.1	154749-154764	0	1.0
NZ_CP040244_1	1.1\|154408\|16\|NZ_CP040244\|PILER-CR	154408-154423	16	NZ_CP040244.1	154801-154816	0	1.0
NZ_CP040244_1	1.1\|154408\|16\|NZ_CP040244\|PILER-CR	154408-154423	16	NZ_CP040244.1	154861-154876	0	1.0
NZ_CP040244_1	1.1\|154408\|16\|NZ_CP040244\|PILER-CR	154408-154423	16	NZ_CP040244.1	154911-154926	0	1.0
NZ_CP040244_1	1.1\|154408\|16\|NZ_CP040244\|PILER-CR	154408-154423	16	NZ_CP040244.1	961498-961513	0	1.0
NZ_CP040244_1	1.1\|154408\|16\|NZ_CP040244\|PILER-CR	154408-154423	16	NZ_CP040244.1	961549-961564	0	1.0
NZ_CP040244_1	1.1\|154408\|16\|NZ_CP040244\|PILER-CR	154408-154423	16	NZ_CP040244.1	6884721-6884736	0	1.0
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NZ_CP040244.1	6341899-6341928	0	1.0
NZ_CP040244_13	13.1\|6085082\|17\|NZ_CP040244\|CRISPRCasFinder	6085082-6085098	17	NZ_CP040244.1	4956636-4956652	1	0.941
NZ_CP040244_14	14.4\|6342520\|19\|NZ_CP040244\|CRT	6342520-6342538	19	NZ_CP040244.1	1617217-1617235	2	0.895
NZ_CP040244_14	14.4\|6342520\|19\|NZ_CP040244\|CRT	6342520-6342538	19	NZ_CP040244.1	6342151-6342169	2	0.895
NZ_CP040244_14	14.4\|6342520\|19\|NZ_CP040244\|CRT	6342520-6342538	19	NZ_CP040244.1	7637138-7637156	2	0.895
NZ_CP040244_14	14.4\|6342520\|19\|NZ_CP040244\|CRT	6342520-6342538	19	NZ_CP040244.1	1830128-1830146	2	0.895

1. spacer 1.1|154408|16|NZ_CP040244|PILER-CR matches to position: 154699-154714, mismatch: 0, identity: 1.0

ctcccggggttgtggg	CRISPR spacer
ctcccggggttgtggg	Protospacer
****************

2. spacer 1.1|154408|16|NZ_CP040244|PILER-CR matches to position: 154749-154764, mismatch: 0, identity: 1.0

ctcccggggttgtggg	CRISPR spacer
ctcccggggttgtggg	Protospacer
****************

3. spacer 1.1|154408|16|NZ_CP040244|PILER-CR matches to position: 154801-154816, mismatch: 0, identity: 1.0

ctcccggggttgtggg	CRISPR spacer
ctcccggggttgtggg	Protospacer
****************

4. spacer 1.1|154408|16|NZ_CP040244|PILER-CR matches to position: 154861-154876, mismatch: 0, identity: 1.0

ctcccggggttgtggg	CRISPR spacer
ctcccggggttgtggg	Protospacer
****************

5. spacer 1.1|154408|16|NZ_CP040244|PILER-CR matches to position: 154911-154926, mismatch: 0, identity: 1.0

ctcccggggttgtggg	CRISPR spacer
ctcccggggttgtggg	Protospacer
****************

6. spacer 1.1|154408|16|NZ_CP040244|PILER-CR matches to position: 961498-961513, mismatch: 0, identity: 1.0

ctcccggggttgtggg	CRISPR spacer
ctcccggggttgtggg	Protospacer
****************

7. spacer 1.1|154408|16|NZ_CP040244|PILER-CR matches to position: 961549-961564, mismatch: 0, identity: 1.0

ctcccggggttgtggg	CRISPR spacer
ctcccggggttgtggg	Protospacer
****************

8. spacer 1.1|154408|16|NZ_CP040244|PILER-CR matches to position: 6884721-6884736, mismatch: 0, identity: 1.0

ctcccggggttgtggg	CRISPR spacer
ctcccggggttgtggg	Protospacer
****************

9. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to position: 6341899-6341928, mismatch: 0, identity: 1.0

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
cccgaccggaggcgccggaggctggcctcc	Protospacer
******************************

10. spacer 13.1|6085082|17|NZ_CP040244|CRISPRCasFinder matches to position: 4956636-4956652, mismatch: 1, identity: 0.941

gtcgcgggtcgagagcg	CRISPR spacer
gtcgcggggcgagagcg	Protospacer
******** ********

11. spacer 14.4|6342520|19|NZ_CP040244|CRT matches to position: 1617217-1617235, mismatch: 2, identity: 0.895

accgaccgggctgccgccc	CRISPR spacer
accgaccggggtgcggccc	Protospacer
********** *** ****

12. spacer 14.4|6342520|19|NZ_CP040244|CRT matches to position: 6342151-6342169, mismatch: 2, identity: 0.895

accgaccgggctgccgccc	CRISPR spacer
accggccggactgccgccc	Protospacer
****.****.*********

13. spacer 14.4|6342520|19|NZ_CP040244|CRT matches to position: 7637138-7637156, mismatch: 2, identity: 0.895

accgaccgggctgccgccc	CRISPR spacer
accgaccggcctgccggcc	Protospacer
********* ****** **

14. spacer 14.4|6342520|19|NZ_CP040244|CRT matches to position: 1830128-1830146, mismatch: 2, identity: 0.895

accgaccgggctgccgccc	CRISPR spacer
accgaccgggaggccgccc	Protospacer
**********  *******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040244_10	10.1\|5069018\|25\|NZ_CP040244\|CRISPRCasFinder	5069018-5069042	25	KY697807	Microcystis phage MACPNOA1, complete genome	5952-5976	4	0.84
NZ_CP040244_10	10.1\|5069018\|25\|NZ_CP040244\|CRISPRCasFinder	5069018-5069042	25	NC_006910	Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence	6646-6670	5	0.8
NZ_CP040244_14	14.3\|6342471\|30\|NZ_CP040244\|CRT	6342471-6342500	30	MK875794	Microbacterium phage Chepli, complete genome	22111-22140	5	0.833
NZ_CP040244_3	3.2\|873596\|33\|NZ_CP040244\|CRT	873596-873628	33	NZ_CP007515	Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence	64730-64762	6	0.818
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	MT498036	Gordonia Phage Zitch, complete genome	46084-46113	6	0.8
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	314561-314590	6	0.8
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP011869	Pseudonocardia sp. HH130629-09 plasmid pLS1-1, complete sequence	181102-181131	6	0.8
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	26798-26827	6	0.8
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	MH001460	Streptomyces phage Paedore, complete genome	7934-7963	6	0.8
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	JX182370	Streptomyces phage R4, complete genome	7902-7931	6	0.8
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NC_009426	Novosphingobium aromaticivorans DSM 12444 plasmid pNL1, complete sequence	80009-80038	7	0.767
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NC_002033	Novosphingobium aromaticivorans plasmid pNL1, complete sequence	23401-23430	7	0.767
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NZ_CP039912	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence	361091-361120	7	0.767
NZ_CP040244_14	14.3\|6342471\|30\|NZ_CP040244\|CRT	6342471-6342500	30	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	832978-833007	7	0.767
NZ_CP040244_14	14.3\|6342471\|30\|NZ_CP040244\|CRT	6342471-6342500	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1359406-1359435	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	213045-213074	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	CP000877	Herpetosiphon aurantiacus DSM 785 plasmid pHAU02, complete sequence	51179-51208	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	389090-389119	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NC_049432	Ralstonia phage RsoM1USA, complete genome	3906-3935	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	547480-547509	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	928836-928865	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1743275-1743304	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	883225-883254	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	MH651166	Gordonia phage Angelicage, complete genome	47466-47495	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	MH976506	Gordonia phage Affeca, complete genome	47222-47251	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NC_013531	Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01, complete sequence	44167-44196	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	6105-6134	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	511943-511972	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NC_008545	Burkholderia cenocepacia HI2424 plasmid unnamed1, complete sequence	73057-73086	7	0.767
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	JX262376	Streptomyces phage phiELB20, complete genome	7891-7920	7	0.767
NZ_CP040244_3	3.2\|873596\|33\|NZ_CP040244\|CRT	873596-873628	33	NZ_CP048631	Ancylobacter pratisalsi strain DSM 102029 plasmid pLGM, complete sequence	146138-146170	8	0.758
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	627383-627412	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	333368-333397	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	760001-760030	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2550471-2550500	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH651174	Mycobacterium phage Easy2Say, complete genome	17086-17115	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MG872831	Mycobacterium phage Asriel, complete genome	14704-14733	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	KX834009	Mycobacterium phage Goldilocks, complete genome	15243-15272	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MK359320	Mycobacterium phage Cookies, complete genome	15705-15734	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH536829	Mycobacterium phage TBrady12, complete genome	15823-15852	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH371112	Mycobacterium phage Adnama, complete genome	16343-16372	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MN428059	Mycobacterium phage Kanye, complete genome	16819-16848	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MF919529	Mycobacterium phage Sassay, complete genome	15340-15369	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	KC748969	Mycobacterium phage Phaux, complete genome	15856-15885	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MG872832	Mycobacterium phage Barbarian, complete genome	14704-14733	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MN096361	Mycobacterium phage Gator, complete genome	15448-15477	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH779503	Mycobacterium phage Gemini, complete genome	16343-16372	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	JF937091	Mycobacterium phage Bask21, complete genome	15015-15044	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH399774	Mycobacterium phage DoctorDiddles, complete genome	14998-15027	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MN586017	Mycobacterium phage OrionPax, complete genome	15581-15610	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NC_021305	Mycobacterium phage Murphy, complete genome	15815-15844	8	0.733
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MF919540	Mycobacterium phage Willez, complete genome	15340-15369	8	0.733
NZ_CP040244_14	14.3\|6342471\|30\|NZ_CP040244\|CRT	6342471-6342500	30	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	530713-530742	8	0.733
NZ_CP040244_16	16.1\|7329159\|33\|NZ_CP040244\|CRISPRCasFinder	7329159-7329191	33	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	48899-48931	8	0.758
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1735785-1735814	8	0.733
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP012664	Defluviimonas alba strain cai42 plasmid pcai42C, complete sequence	72593-72622	8	0.733
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	558995-559024	8	0.733
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	CP003952	Rhodococcus opacus PD630 plasmid 3, complete sequence	11722-11751	8	0.733
NZ_CP040244_12	12.1\|6084797\|41\|NZ_CP040244\|CRISPRCasFinder	6084797-6084837	41	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	359060-359100	9	0.78
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	232831-232860	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MK016498	Mycobacterium phage Manda, complete genome	16318-16347	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MG872843	Mycobacterium phage Sotrice96, complete genome	15788-15817	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MT723943	Mycobacterium phage Cactus, complete genome	15045-15074	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MN096364	Mycobacterium phage Tomaszewski, complete genome	15433-15462	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MF919541	Mycobacterium phage YassJohnny, complete genome	16348-16377	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	KF493883	Mycobacterium phage Mosby, complete genome	15340-15369	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH513978	Mycobacterium phage Phaja, complete genome	16009-16038	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH399778	Mycobacterium phage Icee, complete genome	15492-15521	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH513972	Mycobacterium phage IHOP, complete genome	16009-16038	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	JF937106	Mycobacterium phage SirDuracell, complete genome	14499-14528	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NC_022065	Mycobacterium phage Contagion, complete genome	15340-15369	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MN586013	Mycobacterium phage Traaww1, complete genome	15478-15507	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MH576956	Mycobacterium phage Inca, complete genome	14512-14541	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NC_041850	Mycobacterium phage Eureka, complete genome	15818-15847	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	KF562099	Mycobacterium phage Bruin, complete genome	15856-15885	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	MK801726	Mycobacterium phage ChotaBhai, complete genome	15082-15111	9	0.7
NZ_CP040244_14	14.1\|6342385\|30\|NZ_CP040244\|CRT	6342385-6342414	30	NC_022085	Mycobacterium phage Goku, complete genome	15547-15576	9	0.7
NZ_CP040244_14	14.3\|6342471\|30\|NZ_CP040244\|CRT	6342471-6342500	30	NZ_CP039918	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence	102975-103004	9	0.7
NZ_CP040244_16	16.1\|7329159\|33\|NZ_CP040244\|CRISPRCasFinder	7329159-7329191	33	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	485217-485249	9	0.727
NZ_CP040244_17	17.1\|7472079\|30\|NZ_CP040244\|CRT	7472079-7472108	30	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	905166-905195	9	0.7

1. spacer 10.1|5069018|25|NZ_CP040244|CRISPRCasFinder matches to KY697807 (Microcystis phage MACPNOA1, complete genome) position: , mismatch: 4, identity: 0.84

ggcgtacgagcgcgccacgggccgg	CRISPR spacer
cgcgtacgagcgggccactggccga	Protospacer
 *********** ***** *****.

2. spacer 10.1|5069018|25|NZ_CP040244|CRISPRCasFinder matches to NC_006910 (Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence) position: , mismatch: 5, identity: 0.8

ggcgtacgagcgcgccacgggccgg	CRISPR spacer
tctgtacgagcgcgccaccggccgc	Protospacer
  .*************** *****

3. spacer 14.3|6342471|30|NZ_CP040244|CRT matches to MK875794 (Microbacterium phage Chepli, complete genome) position: , mismatch: 5, identity: 0.833

accggccggaggcgcctgaggctgccctcc	CRISPR spacer
accggccggaggcccctggggctgcacgtc	Protospacer
************* ****.****** * .*

4. spacer 3.2|873596|33|NZ_CP040244|CRT matches to NZ_CP007515 (Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.818

gccaaggtcgtcaagcgggcggcgaagaaggtc	CRISPR spacer
gaaagagtcgtcaagcaggcggcgaagaaggcc	Protospacer
*  *..**********.**************.*

5. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to MT498036 (Gordonia Phage Zitch, complete genome) position: , mismatch: 6, identity: 0.8

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
ggtgccggtcggtgtcgtggtcggcgagca	Protospacer
  ************* **********  *

6. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 6, identity: 0.8

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cctgccggtcggtggggcggtcggtgcggt	Protospacer
************** **.******.*.  *

7. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP011869 (Pseudonocardia sp. HH130629-09 plasmid pLS1-1, complete sequence) position: , mismatch: 6, identity: 0.8

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cctgccggtcggtggggcggtcggtgcggt	Protospacer
************** **.******.*.  *

8. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cggcccggtcggtgcggtggtcggcggcgt	Protospacer
*   **********.*********** * *

9. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to MH001460 (Streptomyces phage Paedore, complete genome) position: , mismatch: 6, identity: 0.8

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cggaccggtcggtcaggtggtcggcgtcgt	Protospacer
*  .*********  ************* *

10. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to JX182370 (Streptomyces phage R4, complete genome) position: , mismatch: 6, identity: 0.8

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cggaccggtcggtcaggtggtcggcgtcgt	Protospacer
*  .*********  ************* *

11. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NC_009426 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL1, complete sequence) position: , mismatch: 7, identity: 0.767

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
ggcaaccaaaggcgccggaggctggcctga	Protospacer
  *.***..*******************

12. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NC_002033 (Novosphingobium aromaticivorans plasmid pNL1, complete sequence) position: , mismatch: 7, identity: 0.767

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
ggcaaccaaaggcgccggaggctggcctga	Protospacer
  *.***..*******************

13. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NZ_CP039912 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence) position: , mismatch: 7, identity: 0.767

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gctgtccgcaggcgccggaggctggcggca	Protospacer
 *.* *** *****************  *

14. spacer 14.3|6342471|30|NZ_CP040244|CRT matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 7, identity: 0.767

accggccggaggcgcctgaggctgccctcc	CRISPR spacer
ccctgccggaggcgcctgatgctgcgatta	Protospacer
 ** *************** *****  *.

15. spacer 14.3|6342471|30|NZ_CP040244|CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.767

accggccggaggcgcctgaggctgccctcc	CRISPR spacer
tcggttccgaggcgcctgaggctgtcctcg	Protospacer
 * * .* ****************.****

16. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
gcggccggtcggtgcggtggacggcgtagg	Protospacer
 * ***********.***** ******

17. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to CP000877 (Herpetosiphon aurantiacus DSM 785 plasmid pHAU02, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cgtattggtcggtgtggtggtcggggtctc	Protospacer
* *...****************** ***..

18. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
gcggccggtcggtgcggtggacggcgtagg	Protospacer
 * ***********.***** ******

19. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NC_049432 (Ralstonia phage RsoM1USA, complete genome) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cggcccggtcggtgtggtgctcggcgggcg	Protospacer
*   *************** ******  *

20. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
gcggccggtcggtgcggtggacggcgtagg	Protospacer
 * ***********.***** ******

21. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
gcggccggtcggtgcggtggacggcgtagg	Protospacer
 * ***********.***** ******

22. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
gcggccggtcggtgcggtggacggcgtagg	Protospacer
 * ***********.***** ******

23. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
gcggccggtcggtgcggtggacggcgtagg	Protospacer
 * ***********.***** ******

24. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to MH651166 (Gordonia phage Angelicage, complete genome) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
ggtgccggtcggtgtcgtggccggcgagtt	Protospacer
  ************* ****.*****  .*

25. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to MH976506 (Gordonia phage Affeca, complete genome) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
ggtgccggtcggtgtcgtggccggcgagca	Protospacer
  ************* ****.*****  *

26. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NC_013531 (Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccg-gtcggtgtggtggtcggcgtcct	CRISPR spacer
-cggtggtgtcggtgtggcggtcggcgtcac	Protospacer
 * *. * **********.********** .

27. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cgcgatagtcggtggggtggacggcgtcct	Protospacer
* .* ..******* ***** *********

28. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cctgccggtcgtcgtggtggtcgtggttgc	Protospacer
*********** .**********  **. .

29. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NC_008545 (Burkholderia cenocepacia HI2424 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cgcgccggtcggtatcgtggtcggcggcga	Protospacer
* .**********.* ********** *

30. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to JX262376 (Streptomyces phage phiELB20, complete genome) position: , mismatch: 7, identity: 0.767

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cggatcggtcggtcaggtggtcggcgtcgt	Protospacer
*  ..********  ************* *

31. spacer 3.2|873596|33|NZ_CP040244|CRT matches to NZ_CP048631 (Ancylobacter pratisalsi strain DSM 102029 plasmid pLGM, complete sequence) position: , mismatch: 8, identity: 0.758

----gccaaggtcgtcaagcgggcggcgaagaaggtc	CRISPR spacer
cggcgc----gtcgccaagcgggcagcgaagaaggcg	Protospacer
    **    ****.*********.**********.

32. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gccgaccggaggcgcgggaggttgggagaa	Protospacer
 ************** *****.***

33. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgtctggaggcgccggaggctggagatc	Protospacer
 .** *.******************   .*

34. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gcgtcgcggcggcgccggaggccggcctca	Protospacer
 *    *** ************.******

35. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
acgtggtggaggtgccggaggccggcctcc	Protospacer
 *  . .*****.*********.*******

36. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH651174 (Mycobacterium phage Easy2Say, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

37. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MG872831 (Mycobacterium phage Asriel, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

38. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to KX834009 (Mycobacterium phage Goldilocks, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

39. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MK359320 (Mycobacterium phage Cookies, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

40. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH536829 (Mycobacterium phage TBrady12, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

41. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH371112 (Mycobacterium phage Adnama, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

42. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MN428059 (Mycobacterium phage Kanye, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

43. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MF919529 (Mycobacterium phage Sassay, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

44. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to KC748969 (Mycobacterium phage Phaux, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

45. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MG872832 (Mycobacterium phage Barbarian, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

46. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MN096361 (Mycobacterium phage Gator, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

47. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH779503 (Mycobacterium phage Gemini, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

48. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to JF937091 (Mycobacterium phage Bask21, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

49. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH399774 (Mycobacterium phage DoctorDiddles, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

50. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MN586017 (Mycobacterium phage OrionPax, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

51. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NC_021305 (Mycobacterium phage Murphy, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

52. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MF919540 (Mycobacterium phage Willez, complete genome) position: , mismatch: 8, identity: 0.733

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttgtagcg	Protospacer
 .*********.*********** *.  *

53. spacer 14.3|6342471|30|NZ_CP040244|CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

accggccggaggcgcctgaggctgccctcc	CRISPR spacer
aggggtcggaggcgcccgaggctgccgagg	Protospacer
*  **.**********.*********

54. spacer 16.1|7329159|33|NZ_CP040244|CRISPRCasFinder matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 8, identity: 0.758

cgggcctcgccggggatctcccagcactgcgtt	CRISPR spacer
tcggcctcgccggtgatcgcccagcaggccgtc	Protospacer
. *********** **** *******   ***.

55. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 8, identity: 0.733

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
gacccttgtcggtgtcgtggtcggcgccct	Protospacer
  . *. ******** **********.***

56. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP012664 (Defluviimonas alba strain cai42 plasmid pcai42C, complete sequence) position: , mismatch: 8, identity: 0.733

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
ctggcgggtcggtgtggtgggcggcgagac	Protospacer
*. ** ************** *****   .

57. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 8, identity: 0.733

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
tgcgctggtcggtgcggtggtcggcgagtt	Protospacer
. .**.********.***********  .*

58. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to CP003952 (Rhodococcus opacus PD630 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.733

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
cctgccggtcggtgtcgaggtcgagccggt	Protospacer
*************** * *****.  .  *

59. spacer 12.1|6084797|41|NZ_CP040244|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 9, identity: 0.78

tgccgacgccgaggagctgcgcgcgagcgcgggcgccgagg	CRISPR spacer
ggcctggatcgaggagctgcgcgcgagcctgggcgccgaga	Protospacer
 *** . ..******************* .**********.

60. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gttcgccggaggcgccggagactggcgtgt	Protospacer
 .. .***************.***** * .

61. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MK016498 (Mycobacterium phage Manda, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

62. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MG872843 (Mycobacterium phage Sotrice96, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

63. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MT723943 (Mycobacterium phage Cactus, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

64. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MN096364 (Mycobacterium phage Tomaszewski, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

65. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MF919541 (Mycobacterium phage YassJohnny, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

66. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to KF493883 (Mycobacterium phage Mosby, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

67. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH513978 (Mycobacterium phage Phaja, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

68. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH399778 (Mycobacterium phage Icee, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

69. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH513972 (Mycobacterium phage IHOP, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

70. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to JF937106 (Mycobacterium phage SirDuracell, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

71. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NC_022065 (Mycobacterium phage Contagion, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

72. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MN586013 (Mycobacterium phage Traaww1, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

73. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MH576956 (Mycobacterium phage Inca, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

74. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NC_041850 (Mycobacterium phage Eureka, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

75. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to KF562099 (Mycobacterium phage Bruin, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

76. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to MK801726 (Mycobacterium phage ChotaBhai, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

77. spacer 14.1|6342385|30|NZ_CP040244|CRT matches to NC_022085 (Mycobacterium phage Goku, complete genome) position: , mismatch: 9, identity: 0.7

cccgaccggaggcgccggaggctggcctcc	CRISPR spacer
gtcgaccggagacgccggaggcttatagcg	Protospacer
 .*********.*********** ..  *

78. spacer 14.3|6342471|30|NZ_CP040244|CRT matches to NZ_CP039918 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence) position: , mismatch: 9, identity: 0.7

accggccggaggcgcctgaggctgccctcc	CRISPR spacer
gaaaagcggatgcgcctgaggctgcccggc	Protospacer
.  .. **** ****************  *

79. spacer 16.1|7329159|33|NZ_CP040244|CRISPRCasFinder matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 9, identity: 0.727

cgggcctcgccggggatctcccagcactgcgtt	CRISPR spacer
accgcgccgccggggatctcccggcgctgcgca	Protospacer
   ** .***************.**.*****.

80. spacer 17.1|7472079|30|NZ_CP040244|CRT matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 9, identity: 0.7

cctgccggtcggtgtggtggtcggcgtcct	CRISPR spacer
tctgccggtcggcgtggtgggcggttattc	Protospacer
.***********.******* ***.  ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6858136 : 6876356

Streptomyces_phage(72.73%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137993959.1\|6858136_6859339_+\|tail	phage tail protein	Q8SBP1	Clostridium_phage	3.3e-08	44.9
WP_137993960.1\|6859335_6860586_+	tape-measure protein	NA	NA	NA	NA
WP_137993961.1\|6860631_6861555_+\|tail	phage tail protein	A0A1J0MC75	Streptomyces_phage	5.1e-49	44.1
WP_137993962.1\|6861596_6862793_+	hypothetical protein	A0A1V0E646	Streptomyces_phage	7.6e-37	46.4
WP_137993963.1\|6862831_6864025_+	hypothetical protein	A0A1J0MC86	Streptomyces_phage	8.6e-49	46.8
WP_137993964.1\|6864055_6865195_+	hypothetical protein	A0A1J0MCA6	Streptomyces_phage	5.7e-50	51.3
WP_137993965.1\|6865205_6866309_+	hypothetical protein	A0A1J0MCX4	Streptomyces_phage	7.3e-95	49.5
WP_137993966.1\|6866308_6866935_+	hypothetical protein	NA	NA	NA	NA
WP_137993967.1\|6866948_6867332_+	ATP-binding protein	NA	NA	NA	NA
WP_137993968.1\|6867404_6868319_+	N-acetylmuramoyl-L-alanine amidase	A0A2P1N078	Streptomyces_phage	9.0e-107	60.6
WP_137993969.1\|6868330_6868564_+	hypothetical protein	A0A142K647	Streptomyces_phage	4.0e-19	70.6
WP_137993970.1\|6868550_6868814_+	hypothetical protein	A0A1J0MCA5	Streptomyces_phage	7.0e-28	75.9
WP_137993971.1\|6868873_6872773_-	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	7.1e-52	26.6
WP_137993972.1\|6872873_6876356_-	DNA-directed RNA polymerase subunit beta	G8DH04	Emiliania_huxleyi_virus	1.8e-30	22.1

DBSCAN-SWA_2

7342861 : 7349044

Bacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137994341.1\|7342861_7343677_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.7e-16	34.2
WP_137994342.1\|7343701_7344727_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.2e-24	28.8
WP_137994343.1\|7344815_7345868_+\|protease	trypsin-like serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	2.2e-08	27.9
WP_137994344.1\|7345888_7346623_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.3e-38	38.0
WP_137995195.1\|7346631_7348023_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_137994345.1\|7348039_7348582_-	PIN domain-containing protein	K4HZX4	Acidithiobacillus_phage	1.1e-27	38.8
WP_137994346.1\|7348597_7349044_-	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	2.0e-14	46.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040244

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection