CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP040246	Mycobacterium avium subsp. hominissuis strain 101034 plasmid pFLAC0181_CHOP1, complete sequence	0 crisprs	NA	0	0
NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	4 crisprs	RT,cas3,csa3,WYL,cas4,DEDDh,DinG	3	4
NZ_CP040245	Mycobacterium avium subsp. hominissuis strain 101034 plasmid pMARIA, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040247_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040247_1

676574-676817

Orphan

Consensus_repeat	Method
GCGGCGGGTGCCGGAGCGGACGGCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP040247_1

>merge|NZ_CP040247|1|676574-676817|CRISPRCasFinder
GCCGCGGGGGCCGGCGCGGCGTCGGGTGCGCCCGGGGTTGCCGGGGCCGCGGCGGCCGGCGCCGGTGGCGGCGGAACCGGTGCGGCGGCCGGGACGGTGGCCGGCTGAACCGGCCCGGGCGCGGGAGCCGCGGCGGGTGCCGGAGCGGACGGCGGGGTGGCGGCGGGTGCCGGAGCCGACGGCGGGGTGGCGGCGGGTGCCGGAGCCGACGGCGCAGCGGCGGCGGGTGCCGGGCCGGCCGCGT

>NZ_CP040247|1|1|676574-676817|CRISPRCasFinder
GCCGCGGGGGCCGGCGCGGCGTCGG	GTGCGCCCGGGGTTGCCGGG
GCCGCGGCGGCCGGCGCCGGTGGCG	GCGGAACCGGTGCGGCGGCCGGGACGGTGGCCGGCTGAACCGGCCCG
GGCGCGGGAGCCGCGGCGGGTGCCG	GAGCGGACGGCGGGGTG
GCGGCGGGTGCCGGAGCCGACGGCG	GGGTGGCGGCGGGTGCCGGAGCCGACGGCGCAGCG
GCGGCGGGTGCCGGGCCGGCCGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040247.1\|WP_003875457.1\|687018_687702_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091
NZ_CP040247.1\|WP_003875447.1\|675933_676080_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040247.1\|WP_011724058.1\|679542_679827_-\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NZ_CP040247.1\|WP_062888070.1\|680900_681293_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP040247.1\|WP_023861252.1\|678136_679450_+\|mannosyltransferase	unknown	unknown	gnl\|CDD\|172015
NZ_CP040247.1\|WP_023861246.1\|672674_673388_-\|NAD-dependent-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_CP040247.1\|WP_023861250.1\|675329_675905_+\|(Fe-S)-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|132296
NZ_CP040247.1\|WP_085978475.1\|673842_674367_-\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226319
NZ_CP040247.1\|WP_023861247.1\|673425_673791_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP040247.1\|WP_023861249.1\|674943_675168_+\|DUF5302-domain-containing-protein	unknown	unknown	gnl\|CDD\|379949
NZ_CP040247.1\|WP_033711794.1\|681711_685404_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP040247.1\|WP_095884648.1\|688588_690487_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP040247.1\|WP_044543576.1\|687694_688426_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP040247.1\|WP_009975493.1\|679957_680731_-\|cell-division-protein-DivIVA	unknown	unknown	gnl\|CDD\|274008
NZ_CP040247.1\|WP_009975471.1\|672031_672667_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP040247.1\|WP_099459250.1\|669262_669463_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040247.1\|WP_085979723.1\|677300_677891_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236138
NZ_CP040247.1\|WP_003875444.1\|674441_674885_+\|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274679
NZ_CP040247.1\|WP_023861244.1\|669606_671949_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP040247.1\|WP_003875456.1\|685405_687022_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063

Protein	Function_ID	Function_description	E-value
NZ_CP040247.1\|WP_003875457.1\|687018_687702_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	1.16646e-55
NZ_CP040247.1\|WP_011724058.1\|679542_679827_-\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	1.7316e-40
NZ_CP040247.1\|WP_062888070.1\|680900_681293_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	7.9879e-36
NZ_CP040247.1\|WP_085978475.1\|673842_674367_-\|DUF1697-domain-containing-protein	gnl\|CDD\|226319	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown].	1.07856e-57
NZ_CP040247.1\|WP_023861246.1\|672674_673388_-\|NAD-dependent-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	1.07168e-117
NZ_CP040247.1\|WP_023861250.1\|675329_675905_+\|(Fe-S)-cluster-assembly-protein	gnl\|CDD\|132296	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730). [DNA metabolism, DNA replication, recombination, and repair].	1.75425e-105
NZ_CP040247.1\|WP_023861252.1\|678136_679450_+\|mannosyltransferase	gnl\|CDD\|172015	PRK13375, pimE, mannosyltransferase; Provisional.	0
NZ_CP040247.1\|WP_023861247.1\|673425_673791_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	4.32706e-35
NZ_CP040247.1\|WP_033711794.1\|681711_685404_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP040247.1\|WP_095884648.1\|688588_690487_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP040247.1\|WP_044543576.1\|687694_688426_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	7.05622e-109
NZ_CP040247.1\|WP_009975493.1\|679957_680731_-\|cell-division-protein-DivIVA	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.53833e-06
NZ_CP040247.1\|WP_003875444.1\|674441_674885_+\|PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	2.337e-41
NZ_CP040247.1\|WP_009975471.1\|672031_672667_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.49915e-15
NZ_CP040247.1\|WP_085979723.1\|677300_677891_-\|hypothetical-protein	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	1.456e-06
NZ_CP040247.1\|WP_023861249.1\|674943_675168_+\|DUF5302-domain-containing-protein	gnl\|CDD\|379949	pfam17227, DUF5302, Family of unknown function (DUF5302). Family of unknown function found in Actinobacteria with highly conserved motif of FRRKSG found at the C-terminus.	1.8842e-12
NZ_CP040247.1\|WP_023861244.1\|669606_671949_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.38283e-127
NZ_CP040247.1\|WP_003875456.1\|685405_687022_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0

>NZ_CP040247.1|WP_003875447.1|675933_676080_+|hypothetical-protein
MKTHITCPCGEAIVGKDEDELVELTQAHLASVHPGLEYDRDAILFMAY
>NZ_CP040247.1|WP_023861250.1|675329_675905_+|(Fe-S)-cluster-assembly-protein
MPKLQLVQEPAADALLDENPFALLVGMLLDQQVPIETAFAGPKKIADRMGRLDAATIADYDPDKFAALCSERPAIHRFPGSMAKRIQALAQLLVDRYDGDAAALWTAGEPDGKELLRRLKGLPGFGEQKARIFLALLGKQYGVTPPGWREAAGEFGKAGTYLSVADIVDARSLGQVRSYKKQMKAAAKAAK
>NZ_CP040247.1|WP_023861249.1|674943_675168_+|DUF5302-domain-containing-protein
MVASSARQGSTSSKSSGGAGSSKSDDDTKRRFREALDRKMAKSTGGSEHKDGAGKQSRAHGPVESRREFRRKSG
>NZ_CP040247.1|WP_003875444.1|674441_674885_+|PPOX-class-F420-dependent-oxidoreductase
MGRQVFDDKLLAVISGNSLGVLATIKRDGRPQLSNVQYHFDPRSLVIQVSITEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAELTPPAAAPDDDTVQGLIALYRNIAGEHPDWDEYRQAMVTDRRVLLTLPISHVYGMPPGMR
>NZ_CP040247.1|WP_085978475.1|673842_674367_-|DUF1697-domain-containing-protein
MTEYAAFLRGVNVGGVNLKMADVKKALTDAGFTAVRTVLASGNVLLQSKAGAAAVRAKAEAALRERFGYDAWVLVYDLDTVRRVVDGYPFEREVDGYQSYVTFVADAAVLDELAALPAGPDERIRRGPDPLGVLYWQVPKGSTLDSTIGKTMGKPRYKSSTTTRNLRTLVKVLS
>NZ_CP040247.1|WP_023861247.1|673425_673791_+|GntR-family-transcriptional-regulator
MELGDRLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARAYRELESAAIIETRGRFGTFVARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPDE
>NZ_CP040247.1|WP_023861246.1|672674_673388_-|NAD-dependent-deacylase
MRIAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWRDNPQRVWGWYLWRHYLVADVAPNAGHRAIAAWQDHAEVSVITQNVDDLHERAGSRPVHHLHGSLFQFRCARCAKPYTGELPAMAEPALEVQPPVCGCGGLIRPDIVWFGEQLPDEPWRRAVEATESADVMVVVGTSAIVYPAAGLAELALSRGAAVVEVNPEVTPLSASATLSIRETASQALPRLLQRLPALLN
>NZ_CP040247.1|WP_009975471.1|672031_672667_+|class-I-SAM-dependent-methyltransferase
MTTVVVDNPFFARIWPVVATHETAAVRALRRENVAGLTGRVLEVGAGIGTNFPLYPETVDEVIAVEPEPRLADRARAAAQVVPVRVVVTGETAEAVGGDEPFDAVVCSLVLCSVRDPQNVLRRLYSLLRPGGQLRYLEHIASAGARGRFQRFVDATLWPRLFGNCHTHRDTERSIVEAGFDVDASRREWTLPAWSPMPVSELLLGRAHRPA
>NZ_CP040247.1|WP_023861244.1|669606_671949_+|MMPL-family-transporter
MLQKIARVAIAAPRRIIALGVLVFLAAAVFGIPVAKSLSPGGFQDPDSESARAIGVLTDKFGQSGQQMLILVTAPGGSNSDPARRVGTELVEQLQRSPLVYNVSSPWTAPPQASADLVSRDGKSGLIVVNLKGGENFVQNNAQTLADQFVHDRDGVTVRAGGAAMQYAQINTQNQADLLVMEMIALPLSFLVLIWVFGGLLAAALPMALGALAVVGSMSVLRLITFTTEVSIFALNLSTALGLALAIDYTLLIVSRYRDELAEGHDRDQALIRTMATSGRTVLFSAVTVALSMSATVAFPMYFLKSFAYAGVATVAFVATASIVITPAAIVLLGDRLDALDVRRLLRRALRRAQPVRKPVEQLFWYRSSKFVMRRWAPVGLIVVGLLLLLGLPFFSVKWGFPDDRVLPRSASAHQVGDRLRSGFAHDSATSVPVVIPDAAGLSPADLDDYAAALSRVPDVSAVSAPGGTFTGGTRVGPPAGATGLGDGSAFLTVSSTAPLFSTANDVQLKRLHEVPGPAGRSVEMGGVAQVNRDSVDAVTDRLPLVLGLMAAITFVLLFLLTGSVLLPAKALACNFLSLTAAFGALVWIFQDGHLGALGTTPSGTLVANMPVLLFCIAFGLSMDYEVFLLSRIREYWLASGAARPARPTPKRAHAANDESVALGVARTGRVITAAALVMSMSFAALIAAHVSFMRMFGLGLTLAVFADATLVRMVVVPAFMHVMGRWNWWAPKPLAWLHDRFGISEAADEEPRLAEPALGPVGSVGLPGGAVAEPVPNIG
>NZ_CP040247.1|WP_099459250.1|669262_669463_+|hypothetical-protein
MTSALVSSIHMTLSVWATIKESLSHDSENVGNLLPGRFAAVSAAKCAVSCLIAAYFSERTLTVEQV
>NZ_CP040247.1|WP_085979723.1|677300_677891_-|hypothetical-protein
MPNIPQQLISSAANAPQILQNLATALGATPPAPPATPGISFPGVPAAGSPVTASSPAAVPSIPGLPQAAAPSAPSTATGGIPGMIQGLTGAQPSAAAPAAPASSSIPGLPAIPGLSAPAAPATPPAPQLPQAQVNMPAMPAGLPVSVPAQVTLPKDLPALASGQAPGAPAAPAAPAAPAPAASPAGPVAPLLAALP
>NZ_CP040247.1|WP_023861252.1|678136_679450_+|mannosyltransferase
MKTGHLGTEATAARAPIAKVGRIDTTSAAPAAPSTRRAADVLAVAAPLLLVASVAARLAWTYLVPNGANFVDLHVYLGGAAALDHPGTLYSYVYADQTPDFPLPFTYPPFAAIVFYPLHLLPFGLVALGWQLATIAALYGAVRISQRLLGVPAGAHGRRVAMVWTAVTIWIEPLRSTFDYGQVNVLLMTAVLWAVYSTRWWVSGLLVGLAAGIKLTPAVSGVYLAGARRWAATVFSAVIFLATIGISVLVVGDQTRYYFTELLGDAHRVGPIATSFNQSWRGGLSRILGHDVGFGPLLVTAVAGTAVLAVLAWRALDRSDRLGRLIVVEVFGLLLSPISWTHHWVWLVPLMIWAIHGPVRAWRGARLVGWGWLALTLIGVPWLLSFAQPNIWQIGRPWYLAWAGLVYIVAAVATLIWIAAAGRRAGHQVTAPSVTPA
>NZ_CP040247.1|WP_011724058.1|679542_679827_-|4a-hydroxytetrahydrobiopterin-dehydratase
MAVLTDEQIDAALPDLDGWERADGALRRSIKFPSFLDGIDAVRRVAEHAESKDHHPDIDIRWRTVTFALVTHSEGGITQNDVDMARDINGIVGS
>NZ_CP040247.1|WP_009975493.1|679957_680731_-|cell-division-protein-DivIVA
MITEPATAFSRVFRGYDPAAVDAYVEALLAKQKLLIDEVQNLRAQRNESGDQLAALRIEVACLKDEVAHLSDTSPTPYAIQHRMTKMLRRTLEEISRMQAEAQAEAESMIAAAAAQVEASHREHQELLADMAAQREALETEREEAKKDLEAELATMRAEAQAAIDEARQEAERECARLLAEAKQKADDLDERARRTVEEANQQRIMILEELMDVARDLQGLPASLESAYQERTSPSEASVVVPLDPKNQAPGPAVAS
>NZ_CP040247.1|WP_062888070.1|680900_681293_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MPTQIVVAGALIRGSRLLVAQRARPPELAGRWELPGGKVAPGETERDALARELAEELDLRVGDIAVGDRLGGDIAVDGGMTLRAYRVRLLRGRPDARDHRALRWITAAQLHDLDWVPADRGWLSDLARVL
>NZ_CP040247.1|WP_033711794.1|681711_685404_+|nitrate-reductase-subunit-alpha
MTATPHVGGVLEELLERSGRFFTPGEFSADLRTVTRQGGREADVFYRDRWSHDKVVRSTHGVNCTGSCSWKIYVKDGIITWETQQTDYPSVGPDRPEYEPRGCPRGASFSWYSYSPTRVRYPYARGVLVEMYREAKARLGDPVLAWADIQADPERRRRYQRARGKGGLVRITWAEATELIAAAHVHTIKTYGPDRVAGFSPIPAMSMVSYTAGSRFFELIGAPMTSFYDWYADLPVASPQVFGDQTDVPESGDWWDAAYLMMWGSNVPITRTPDAHWMAEARYRGTKVVTVSPDYADNTKFADEWMPCAAGTDGALAMAMGHVILSECYVQEQVPFFTDYARRYTDLPFLIKLEERGDMLVPGKNLTAADLGEAVENAALKPALLDETTNSVAVPHGSLGFRYGESGVGKWNLDLGDLVPALSVRAAPTEDGETALVHLPSFDTVDGEGKSVARGVPVRRVGKHLVCTVFDLMLAQYGVERPGLPGQWPTGYDDATQQNTPAWQEAITGVSAAQAIRVAREFARSAEESGGRSMIIMGGGICHWFHSDAIYRAVLALLMLTGSMGRNGGGWAHYVGQEKVRPLTGFQTMAMATDWVRPPRQVPGASYWYAHTDQWRYDGCGADKLASPVGRGRFAGRHTMDLLASAVAMGWSPYYPQFDRSSLDVADEARAAGRDVAEYVAEQLGRRNLKLAVTDPDNPVNWPRVLTVWRANLIGSSGKGGEYFLRHLLGTDSNASAVPPEDGVRPVDVTCEGDIPEGKLDLMMSIDFRMTSTTLVSDVVLPAATWYEKADISSTDMHPYVHAFSAATDPPWETRSDFDAFGAIARAFSTMAKEHLGTRTDVVLTALQHDTPDAMAYPDGAEHDWLRSGATPVPGRTMGKLTVVERDYAAVYDKWRTLGPLVDKFGLTTKGVTVHPFREVEELAARFGVLKSGVAAGRPAITTAARMADVLLLLSGTTNGRLAVEGFHELEKRTGQRLVHLAEGSEDKRISYADTQARPVPVVTSPEWSGSETGGRRYAPFTINIENLKPFHTLTGRMHFYLAHDWVEELGEHLPVFRPPLDMARLFGQPRLGACEDGIGLTVRYLTPHSKWSFHSTYQDNLYMLSLSRGGPTMWMSPGDAAKIQVRDNDWVEAVNANGIYVCRAIVSHRMPDGVVYVYHVQERTVDTPRTETNDKRGGNHNALTRVRIKPSHLAGGYAQHAFAFNYLGPTGNQRDEVTIVRRRSQEVVY
>NZ_CP040247.1|WP_003875456.1|685405_687022_+|nitrate-reductase-subunit-beta
MKVMAQLAMVMNLDKCIGCHTCSVTCKQAWTNRSGTEYVWFNNVETRPGQGYPRTYEDQERWRGGWIRDKRGRLRLRDGGRFQKLLRIFANPKLPVIGDYYEPWTYDYENLTTAPAGDTFPTAAPKSLISGEPMKVSWGPNWDDNLAGSPEILAEDPILKKVSEEVKLSLEQTFMFYLPRICEHCLNPSCVASCPSGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVYFNHKTGKAEKCTLCYPRMEVGLPTICSETCVGRLRYLGVVLYDMDRVLEAASVENDTDLYRAQCDILLDPNDTDVIAGARAQGIPDEWIEAAQRSPVYALIHTYRVALPLHPEYRTMPMVWYIPPLSPVVDAVSRDGHDGEDLGNLFGALDALRIPMQYLAELFTAGDTAVVEGVLRRLAAMRSYMRDINLGRETQPHIPHSVGMTEEQIYEMYRLLAIAKYEERYVIPTAFAPQARDLEQMGCSLTGDGGPGMYESEPVAVETFHALKQRGGPTEAEPGSTRPRVNLLNWDGGQVPAGMFPEAQRR
>NZ_CP040247.1|WP_003875457.1|687018_687702_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MRLLSALRERSSSRVMQDRLVWQAASLLLAYPDDGFGGRLDTVEELLGHVSGPAGTLLGQTAAALRGREPMAAAMDYVATFDMRRRATMYLTYWTAGDTRNRGREMLAFATAYREAGVQPPSNEAPDHLTVVLEFAATVDPDAGRRLLIAHRVPIDVLRCALADAKSPYEPAVAAVCQTLPAATDQEARRAERLARQLLEAGPPAEAVGLQPFTLTVPPRAEGTPGV
>NZ_CP040247.1|WP_044543576.1|687694_688426_+|respiratory-nitrate-reductase-subunit-gamma
MFSNVLFWDISPYVTLSVLIVGTWWRYRYDKFGWTSRSSQIYESRLLSIASPIFHFGILAVFAGHVMGLFIPPRVTHMLKMSDHLYHMQAVIAGSAAGFATLAGVGLLIYRRFTRPAVSAATTRSDKVMYMVLVLAIVVGLYCDLIGTGPHGGEFHYRYTVGLWFRRIWILQPHGEVMVNAPLDYQLHALIGMVLFTLWPFTRLVHVFSAPVVYLFRPYIVYRSREVAAKDQLVGTAPRRRGW
>NZ_CP040247.1|WP_095884648.1|688588_690487_+|translational-GTPase-TypA
MSDVPFRNVAIVAHVDHGKTTLVDAMLRQSGALHHRGDDTQERILDSGDLEKEKGITILAKNTAVHRHHPDGSVTVINVIDTPGHADFGGEVERGLSMVDGVLLLVDASEGPLPQTRFVLRKALAAHLPVILVVNKTDRPDARIAEVVEASHDLLLDVASDLDDEAAKAAEHALGLPTLYASGRAGVASTEQPADGEVPAGANLDPLFDVLLEHIPAPSGDPEAPLQALVTNLDASTFLGRLALIRIYNGKLRKGQQVAWMREVDGLPVITSAKITELLATEGVERSPTDEAIAGDIVAVAGLPEIMIGDTLADPDHAHALPRITVDEPAISVTIGTNTSPLAGKVPGHKLTARLVRNRLDQELVGNVSIRVVDIGRPDAWEVQGRGELALAVLVEQMRREGFELTVGKPQVVTRTIDGQLHEPFEAMTIDCPEEFVGAITQLMAARKGRMEEMTNHAAGWVRMDFIVPSRGLIGFRTDFLTITRGTGIANAVFDGYRPWAGEIRARHTGSLVSDRAGTITPFAMIQLADRGQFFVEPGQDTYEGMVVGINPRAEDLDINVTREKKLTNMRSSTADVIETLAKPLELDLEQAMEFCAADECVEVTPEIVRVRKVELDATSRARSRARAKARG

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Crispr_ID: NZ_CP040247_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040247_2

1007213-1007291

Orphan

Consensus_repeat	Method
ATCAATTGCGCCACTCCTTTTCATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040247_2

>merge|NZ_CP040247|2|1007213-1007291|CRISPRCasFinder
ATCAATTGCGCCACTCCTTTTCATCGCTGCGCTCTGCATCGTCGTGGCGCGTATCAATTGCGCCACTCCTTTTCATCGC

>NZ_CP040247|2|2|1007213-1007291|CRISPRCasFinder
ATCAATTGCGCCACTCCTTTTCATCGC	TGCGCTCTGCATCGTCGTGGCGCGT
ATCAATTGCGCCACTCCTTTTCATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040247.1\|WP_023900055.1\|1007297_1008842_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_CP040247.1\|WP_019732672.1\|1002299_1003079_+\|DUF4239-domain-containing-protein	unknown	unknown	gnl\|CDD\|372881
NZ_CP040247.1\|WP_033710634.1\|1012332_1013259_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
NZ_CP040247.1\|WP_042906634.1\|1008838_1009960_-\|transaldolase	unknown	unknown	gnl\|CDD\|235117
NZ_CP040247.1\|WP_019732673.1\|1003178_1004165_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381310
NZ_CP040247.1\|WP_019732675.1\|1005553_1006309_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|376480
NZ_CP040247.1\|WP_019732674.1\|1004166_1005096_-\|histone-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|212541
NZ_CP040247.1\|WP_019732679.1\|1013435_1014410_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176189
NZ_CP040247.1\|WP_009977607.1\|997328_998114_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP040247.1\|WP_003876059.1\|998144_998378_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NZ_CP040247.1\|WP_033710637.1\|1014429_1015068_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040247.1\|WP_137987536.1\|1017853_1019557_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274589
NZ_CP040247.1\|WP_033710672.1\|998395_999313_-\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274651
NZ_CP040247.1\|WP_003877656.1\|1016921_1017830_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040247.1\|WP_033718259.1\|1016145_1016925_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP040247.1\|WP_003876065.1\|1005114_1005513_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040247.1\|WP_137987534.1\|996084_997332_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP040247.1\|WP_137987535.1\|1015017_1015971_-\|heme-A-synthase	unknown	unknown	gnl\|CDD\|224528
NZ_CP040247.1\|WP_023863986.1\|1009976_1012076_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP040247.1\|WP_033720734.1\|999416_1002224_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570

Protein	Function_ID	Function_description	E-value
NZ_CP040247.1\|WP_023900055.1\|1007297_1008842_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_CP040247.1\|WP_019732672.1\|1002299_1003079_+\|DUF4239-domain-containing-protein	gnl\|CDD\|372881	pfam14023, DUF4239, Protein of unknown function (DUF4239). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 254 and 270 amino acids in length.	9.58462e-10
NZ_CP040247.1\|WP_033710634.1\|1012332_1013259_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	4.31569e-140
NZ_CP040247.1\|WP_042906634.1\|1008838_1009960_-\|transaldolase	gnl\|CDD\|235117	PRK03343, PRK03343, transaldolase; Validated.	0
NZ_CP040247.1\|WP_019732673.1\|1003178_1004165_+\|aldo/keto-reductase	gnl\|CDD\|381310	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR). Bacillus subtilis YhdN, also called general stress protein 69 (GSP69), is a founding member of aldo-keto reductase family 11 member B1 (AKR11B1). It acts as an aldo-keto reductase (AKR) that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor. Escherichia coli YdjG is a founding member of aldo-keto reductase family 11 member B2 (AKR11B2). It catalyzes the NADH-dependent reduction of methylglyoxal (2-oxopropanal) in vitro. It may play some role in intestinal colonization.	5.19804e-138
NZ_CP040247.1\|WP_019732675.1\|1005553_1006309_-\|6-phosphogluconolactonase	gnl\|CDD\|376480	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.	2.92236e-94
NZ_CP040247.1\|WP_019732674.1\|1004166_1005096_-\|histone-deacetylase-family-protein	gnl\|CDD\|212541	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes eukaryotic as well as bacterial Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. In D. discoideum, where four homologs (HdaA, HdaB, HdaC, HdaD) have been identified, HDAC activity is important for regulating the timing of gene expression during development. Also, inhibition of HDAC activity by trichostatin A is shown to cause hyperacetylation of the histone and a delay in cell aggregation and differentiation.	1.70246e-166
NZ_CP040247.1\|WP_019732679.1\|1013435_1014410_-\|quinone-oxidoreductase	gnl\|CDD\|176189	cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	8.61611e-172
NZ_CP040247.1\|WP_009977607.1\|997328_998114_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	5.02392e-143
NZ_CP040247.1\|WP_003876059.1\|998144_998378_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	6.06782e-13
NZ_CP040247.1\|WP_137987536.1\|1017853_1019557_-\|hypothetical-protein	gnl\|CDD\|274589	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins found in the Actinobacteria. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).	6.04356e-61
NZ_CP040247.1\|WP_033710672.1\|998395_999313_-\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274651	TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase, MSMEG_4879 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_4879 from Mycobacterium smegmatis. [Unknown function, Enzymes of unknown specificity].	1.05566e-123
NZ_CP040247.1\|WP_003877656.1\|1016921_1017830_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.07691e-87
NZ_CP040247.1\|WP_033718259.1\|1016145_1016925_-\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	8.83806e-54
NZ_CP040247.1\|WP_137987534.1\|996084_997332_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP040247.1\|WP_137987535.1\|1015017_1015971_-\|heme-A-synthase	gnl\|CDD\|224528	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones].	8.00846e-58
NZ_CP040247.1\|WP_023863986.1\|1009976_1012076_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP040247.1\|WP_033720734.1\|999416_1002224_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0

>NZ_CP040247.1|WP_019732675.1|1005553_1006309_-|6-phosphogluconolactonase
MSTRIEIFPDSQALVTAAAARLADTIADAVAARGRALIVLTGGGNGIGLLKSLAGRPIDWSAVHLFWGDERYVPEDDDERNEKQAREALLSHVDIPSSQVHPMPASDGEFGSDLAAAALAYEQLLAANAPPGQPVPNFDVHLLGMGPEGHINSLFPDTPAVLETTRMVVPVEDSPKPPPQRITLTLPAIARSREVWLMVSGAGKADAVAAAINGAAPVSVPAAGAVGLDTTLWLLDREAAAKLPPGTAVQG
>NZ_CP040247.1|WP_003876065.1|1005114_1005513_-|hypothetical-protein
MTGMADRTVRGGQERSRIKTLTQAALNADKTVEQVEDVLDGLSSTLKELSSSLAALNATVERMETGLDHLDGTLASLDDLAKRLIVLVEPVEAIVARVDDLVKVGETVMSPLSVTEHAVRGLVDRLRNRTAQ
>NZ_CP040247.1|WP_019732674.1|1004166_1005096_-|histone-deacetylase-family-protein
MATLLLHHPDFAAHRTAPGHPERPDRYRAVAAALSLPGFDALVRETAEPAELAATRYVHSNRYVDALEAARPQHGYVYLDGGDTMMEPSTWETALRGVGATLQAVDRVLAGDVQNAFVACRPPGHHAETERAMGFCLFNNISIGARHAQRKHGLMRVAIVDFDVHHGNGTQQIFYSDPSVLYASTHQMPLFPGTGAAAETGVGNIFNSPLAPGDGGAELRAAFTDRIVPALQAFSPELIIVSAGFDAHERDPLGSLTMTTDDFGWVTRELMKSAEKLCDGRLVAVLEGGYDLQALADSVTAHVGELLKG
>NZ_CP040247.1|WP_019732673.1|1003178_1004165_+|aldo/keto-reductase
MKTITFGKTGLEVSRLAFGTWEFCSDWGHADEDAAITMIRSARDLGINFFDTAQQYGFGASERLLGKALRDDLARARDEVVIATKGGLRATDSGLVRDASPQWLRKGVESSLTALGIDHIDVYLVHWPDPRMPAAETAGALAELVSEGKIRHVGVSNYDTAQVEEFSATLPVEVVQPPYHLFRRDIEDTLLPYAREHDIGVMVYGPLAHGLLTGTVKPDTRFAPQDWRAKSDIFSGDGFLRNLEVVAQLQELASDLGVTISQLAIARVLAQPGVHVAIVGAQHLHYLQESARAADVTLSDTDLAAVDNVLAAATPVGGPYPEMHQKAS
>NZ_CP040247.1|WP_019732672.1|1002299_1003079_+|DUF4239-domain-containing-protein
MSGPGLPLWLLLVCAVAAAIGVAVGAIWLGRRLLQGRQQNPAIASFLTVVGFVYGALLGFTVVATWEHFSSTQVVVSAEASALTTMYRQSVAMPEPERTEIQELLRKYAGAVAGPEWNKQRNEGARAAITRMYRTVGRQQPNVAARPINQQFLNQLSELASDRNERIVGTKPRIPPLLWAGLIFGAVVLVAFTGFLRLGSTVGHVVVSGTVAVLLALLLCTVFELDHSYATDQRITSGPFQHALDIFDAVDNDSRYFPR
>NZ_CP040247.1|WP_033720734.1|999416_1002224_+|phosphoenolpyruvate-carboxylase
MVEASEGTLEPIGAVQRTLVGREATEPMRADIRLLGAILGDTVREQNGQQVFELVERARVESFRVRRSEIDRAELARMFAGIDIHQAIPVIRAFSHFALLANVAEDIHRERRRAIHVAAGEPPQDSSLAATYAKLDRAQLDSATVAEALRGAVVSPVITAHPTETRRRTVFVTQHRITELMRLHAEGHTETDDGRNIELELRRQVLTLWQTALIRLSRLQITDEIEVGLRYYAAAFFKVIPQVNAEVRNALRARWPGADLLDEPIVAPGSWIGGDRDGNPNVTADVVRRATGDAAYTALAHYLAELTACEQELSMSARLVAVTPELAALAEDCAEKARADEPYRRALRVIRGRLTATAAEILDRRPQHELDLGLPPYATPAELRADLDTVDASLRAHGSALLADDRLALLREGVRVFGFHLCGLDMRQNSDVHEEVVAELLAWAGVHPDYRSLPEDERVELLAAELGTRRPLVGDRAELSELADKELGVVRAAAHAIRRYGPAAVPNYVISMCRSVSDVLEAAILLKEAGLIDASGPEPYCPVGISPLFETIEDLHNGAAILHAMLELPLYRALVAARGQSQEVMLGYSDSNKDGGYLASSWAVYRAELALVEVARKTGIRLRLFHGRGGTVGRGGGPSYEAILAQPPGAVNGSLRLTEQGEVIAAKYAEPQVAQRNLESLVAATLESTLLDVEGLGDTAEPAYAVLDEVAVLAQRAYAELVHETPGFVDYFMASTPVSEIGSLNIGSRPTSRKPTESIADLRAIPWVLAWSQSRVMLPGWYGTGSAFEQWIAAGPQSRAERVDILHDLYRRWPFFRSVLSNLAQVLAKSDLGLAAQYAELVDDAALRRRVFGKIADEHRRTIAMHKLITGQDNLLADNPALARSVFNRFPYLEPLNHLQVELLRRYRSGDNDELVQRGILLTMNGLASALRNSG
>NZ_CP040247.1|WP_033710672.1|998395_999313_-|LLM-class-F420-dependent-oxidoreductase
MSAGIILMAHPDAANLVDDVIAQARRAHELGVGQVWLAQQQSYDAIALAALVGAAVPGLGVGTSVVPINPRHPLIVASLAQTAQAAAHGNFSLGLGLGAADLERRTFGTEWPNTITRLREHLTILGSVFHSGAVDFHGSELSAAPSFPVRVPGGTPIPVYVAAMGPKALQVTGELADGTLPYLAGPRTIEEFIVPRITKAAAEAARPAPRIIAAVPVLLSDDVEGARAAAAQQLSFYETIPSYRNVIAREGLSNAVELAAIGPEESVLRQVRRYFDAGATDVVLSPLDRSASVDREALWRLTAAL
>NZ_CP040247.1|WP_003876059.1|998144_998378_+|preprotein-translocase-subunit-SecG
MQLALQITLVVTSILVVLLVLLHRAKGGGLSTLFGGGVQSSLSGSTVVEKNLDRLTLFITGIWLVCIIGMALLIKYR
>NZ_CP040247.1|WP_009977607.1|997328_998114_+|triose-phosphate-isomerase
MSRKPLIAGNWKMNLNHFEAIALVQKIAFALPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLSYGAQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAAAALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGEQFATLAAIAAGGPLP
>NZ_CP040247.1|WP_137987534.1|996084_997332_+|phosphoglycerate-kinase
MAVHNLKDLLAEGVSGRGVLVRSDLNVPLDSDGEQGRITDPGRITASVPTLSALVEAGAKVVVAAHLGRPKNGPDPALSLAPVAAALGEQLGRHVQLASDVVGTDALARAEGLTDGDVLLLENIRFDARETSKDDAERLALARQLAELVGSTGAFVSDGFGVVHRKQASVYDVATLLPHYAGTLVAEEIAVLEQLTGSTKRPYAVVLGGSKVSDKLGVIESLATKADSIVIGGGMCFTFLAAQGFSVGKSLLETEMVDTCRRLLDTYVDVLRLPVDIVAADRFAADAAPQTVPADAIPDDLMGLDIGLGSVKRFTALLSNAETIFWNGPMGVFEFPAFAAGTKGLAEAIAAATGKGAFSVVGGGDSAAAVRALGIPESGFSHISTGGGASLEYLEGKALPGIEVLGRPQPTGGAA
>NZ_CP040247.1|WP_023900055.1|1007297_1008842_-|glucose-6-phosphate-dehydrogenase
MSPARTAQQWHNPLRDKRDKRLPRIAGPCGMVIFGVTGDLARKKVMPAIYDLANRGLLPPSFSLVGFARRDWSTQDFGKVVYEAVKEHCRTPFRQENWDRVAEGFRFVPGAFDDDEAFGRLAETLDKLDAERGTGGNHAFYLAIPPKSFPVVCEQLHKSGLARPQGDRWSRVVIEKPFGHDLESAQSLNKAVNAVFPEESVFRIDHYLGKETVRNILALRFANQLFDPIWNSHYVDHVQITMAEDIGLGGRAGYYDGIGAARDVIQNHLMQLLALTAMEEPVSFSPLALQAEKIKVLSATHLAHPLDETTSRGQYTAGWQGGEKVVGLLDEEGFAKDSITETFAAITLEVDTRRWAGVPFYLRTGKRLGRRVTEIALVFKRAPHLPFDATMTDELGANAMVIRVQPDEGVTLRFGSKVPGTAMEVRDVNMDFSYGSAFAEESPEAYEQLILDVLLGEPSLFPVNAEVELAWHILDPVLDNWASGGRPEPYEAGTWGPDSAFEMLHRTGREWRRP
>NZ_CP040247.1|WP_042906634.1|1008838_1009960_-|transaldolase
MTAQNPNLAALSAAGVSVWLDDLSRDRLRSGNLQELIDTKCVVGVTTNPSIFQKAFAEGHAYDSQIAELAARGADVDATIRTVTTDDVRNACDVLTREWENSDGVDGRVSIEVDPRLAGDTDKTIAQAVELWKIVDRPNLFIKIPATQAGLPAITAVLAEGISVNVTLIFSVERYRAVMDAYLAGMEKAREAGHDLSKIHSVASFFVSRVDTEIDKRLEKIGGERALALRGQAGVANARLAYAAYQEVFEGGQRYQALKADGARVQRPLWASTGVKNPDYSDTLYVTELVAPNTVNTMPEKTIDAVADHGVIRGDTVTGTGPDAQRVFDELAAVGVDLPDVFVVLENEGVEKFVDSWTELMEETQKQLGSATK
>NZ_CP040247.1|WP_023863986.1|1009976_1012076_-|transketolase
MTTLEEISALTQPHLPDDWSELDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRVMRHDPSDTHWLGRDRFVLSAGHSSLTLYLQLYLGGFGLELSDIESLRTWGSKTPGHPEFRHTKGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAAAGTSPFDHFIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDHNQISIEDDTNIALCEDTAARYEAYGWHVQRVEGGENVVAIEEAIAAAKAVTDRPSFIELRTIIGYPAPNAMNTGKAHGAALGEEEVAAVKKILGFDPDKTFQVRDEVIAHTRKLVDRGREAHQKWQTDFDAWAQREPERKALLERLTAEKLPDGWDADLPHWEPGSDAIATRKASGAVLNAVAPKLPELWGGSADLAESNLTTINNADSFGPPSISTKEFTASWYGRVLHFGVREHAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAVRLASLMDIDTIYVWTHDSIGLGEDGPTHQPIEHLAALRAIPKLSVVRPADANETAYAWRTILARGNGSGPVGLVLTRQGLPVLEGTDADGVARGGYILGSDGEEAGQEPDVILIATGSEVQLAVEAQKLLADKDIVARVVSMPCVEWFESQPDDYRDSVLPPSVSARVAVEAGVAQSWHKLVGDTGKIISIEHYGESADYKTLFREFGFTAEAVAAAAEEVVDN
>NZ_CP040247.1|WP_033710634.1|1012332_1013259_+|protoheme-IX-farnesyltransferase
MSVRGRVAPSQTPSRIPGTVLAYLALTKPRVIELLLVTAIPAMLLAQRGTVNPLLIVNTLIGGMLAAGGANALNCVADADIDKVMKRTARRPLARAAVPTRNALVFGLVLTAGSFLWLWWTTNLLSGLLALATIAFYVFIYTLLLKRRTSQNVVWGGAAGCMPVMIGWSAVTGTIQWPALVMFAIIFFWTPPHTWALAMRYKDDYKAAGVPMLPAVATERQVTKQILVYTWLTVLATLALALATGWLYAAVAVVAGVWFLAMAHQLYAGVRAGEPVKPLRLFLQSNNYLAVVFCALAIDSAIGLPTLL
>NZ_CP040247.1|WP_019732679.1|1013435_1014410_-|quinone-oxidoreductase
MHAIEVSETGGPEVLRYVETPTPTAGPGQVLIKAEAIGVNYIDTYFRSGQYPRELPFIIGQELCGTVAAAGDGVDGFNVGDRVVSAAATGGYAEYATAPASLTAHVPDEVAADVAASALLKGLTAHYLLKSVYPVQAGDTVLVHAGAGGVGLILTQWAHLLGARVITTVSTPEKARRSAQAGADEVLSYPDDADEFGSRIRALTEGAGVAAVYDGVGASTFDASLASLAVRGTLALFGAASGPVPPFDPQRLNAAGSVFLTRPSLAHFIRTGQEFSWRAEELFAAIAAGDITVEVGGRYPLADAARAHRDLQGRKTTGSIVLLP
>NZ_CP040247.1|WP_033710637.1|1014429_1015068_+|hypothetical-protein
MKLARPDVFHPRIVLAGRRDDPGLVSALRRRGLHARRLPWEDPETLHADLVIVRAGPDAARRDEFLAWTGRPRHVLNPPAALAWNLDAHYLRDLRDGGVPTRPGAQPETSLIFLGGAQSHAWPAEPEFESWDLGHAALAVAADHTGIGVPEVLFARADLAGDRLVRLDLVAPELGWRHLDTPGREAAQRRFALAVESACERLGLGPLSHRRP
>NZ_CP040247.1|WP_137987535.1|1015017_1015971_-|heme-A-synthase
MLGRTLLRLVDLLPNPSVGVQRLIAVAVILTQGGIAITGAIVRVTASGLGCPTWPQCFPGSFVPVPHAEVPRIHQAVEFGNRMITLAVVVAAALAVLAVTRARRRPEVLVYAWLMPVSTVVQAVIGGITVRTGLLWWTVAIHLLTSMTMVWLSVLLYVKIGEPDDGVDQPRVPTPLRVLTALSGVNLAAVLVTGTLVTAAGPHAGDRSPTRTVPRLEVQVDTLVHLHSSLLVAYLALIVGLGFGLLAVRAARPILLRLGVLLVLLCAQAAVGTAQYYTGVPAALVAVHVAGAAACTAATAALWASMRQRAQAEPLTG
>NZ_CP040247.1|WP_033718259.1|1016145_1016925_-|ABC-transporter-permease
MTDSGVFPAGTFTPNPRPSAVPKMIAAQYGLELKLLLRNGEQLLLTMFIPITLLVGLTLLPLGSFGQHRAATFTPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVTVVFLQAILLGAIGFALGWRPALAALALGAAVIALGTAVFAALGLLLGGTLRAEIVLALANLMWFVFAGLGALTVDSGVIPAGVKWAARLTPSGALTEALSRAMTLSADWFGMAVLVAWGALGALGALRWFRFT
>NZ_CP040247.1|WP_003877656.1|1016921_1017830_-|ABC-transporter-ATP-binding-protein
MRLRGVSKHYGSTTAVRDLDLEVHAAEVLALLGPNGAGKTTTVEMCEGFVRPDAGTLEVLGLDPIADNARLRPRIGVMLQGGGGYPAARAGEMLNLVAAYAADPLDPAWLLDTLGLTDAARTTYRRLSGGQQQRLALACALVGRPELVFLDEPTAGMDAHARLLVWELIDALRRDGVTVVLTTHQLKEAEELADRLVIIDHGATVAAGTPAELMRSGAKDQLRFSAPPRLDLSLLSAALPEDYKATELTPGEYLVEGPVDPQVLATVTAWCARIDVLATDMRVEQRSLEDVFLDLTGRKLRQ
>NZ_CP040247.1|WP_137987536.1|1017853_1019557_-|hypothetical-protein
MAARHHTLSSSIASLHGDEQAVGSPLNDTELTALRRTRLFGASGTMLMAIGALGAGARPVVQDPTFGVRLLNLPSRIQTVSLTMTTTGAVMMALAWLMLGRFALGTRRMSRGDLDRTLLLWVLPLLIAPPMYSKDVYSYLAQSQISLEGLDPYRVGPASGLGLSHIFTLSVPTLWRETPAPYGPLFLWIGRGISAITGENIVAAVLCHRLVELIGVGLIVWATPRLARRCGVAEVSALWLGAANPLLIMHLVAGVHNEALMLGLMLAGAEFALRGIDSARLLPHSLRPGPDWEPLGMLLAGAVLITLSSQVKLPSLLALGFVTMALAYRCGGNLRAVLLAGGGMAALSLAVMALVGWASGLGFGWIYTLGTANVVRSWMSPPTLLALGTGQVGILLGLGDHTTAVLGLTRAIGVLIITVMVGWLLLAVFRGRLHPIGGLGVALGVTVLLFPVVQPWYLLWAIIPLAAWATRTGFRVAAIVISLVVGIFGPTANGDRFALFQIVDATLASTVIVAVLIALTYTRLPWRPLPAPQRAPHGQPVIDPVAPARSSSTPRPAPAHDAYADST

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Crispr_ID: NZ_CP040247_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040247_3

1817559-1817657

Orphan

Consensus_repeat	Method
CCGCTCGGGGTCGGGCCGCAACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040247_3

>merge|NZ_CP040247|3|1817559-1817657|CRISPRCasFinder
CCGCTCGGGGTCGGGCCGCAACCGTTGGCCTGCGACCCGGGCCAATGGTGGGACCCGACGGCCAACGTGTGCCGGCCGCTGGGGGTCGGGCCGCAACCG

>NZ_CP040247|3|3|1817559-1817657|CRISPRCasFinder
CCGCTCGGGGTCGGGCCGCAACCG	TTGGCCTGCGACCCGGGCCAATGGTGGGACCCGACGGCCAACGTGTGCCGG
CCGCTGGGGGTCGGGCCGCAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040247.1\|WP_062887792.1\|1815287_1816763_-\|biotin-carboxylase	unknown	unknown	gnl\|CDD\|180605
NZ_CP040247.1\|WP_011724991.1\|1819748_1820591_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP040247.1\|WP_033722653.1\|1808634_1809078_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|365807
NZ_CP040247.1\|WP_062887208.1\|1812578_1814165_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP040247.1\|WP_009976825.1\|1807029_1807350_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959
NZ_CP040247.1\|WP_062895398.1\|1811167_1811746_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040247.1\|WP_011724993.1\|1818931_1819243_-\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
NZ_CP040247.1\|WP_011724997.1\|1809242_1810472_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NZ_CP040247.1\|WP_137987588.1\|1808194_1808575_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NZ_CP040247.1\|WP_132160223.1\|1817731_1818817_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP040247.1\|WP_011725000.1\|1805570_1806977_+\|acyltransferase	unknown	unknown	gnl\|CDD\|334202
NZ_CP040247.1\|WP_062887757.1\|1824829_1825714_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP040247.1\|WP_062887621.1\|1810823_1811108_-\|DUF3024-domain-containing-protein	unknown	unknown	gnl\|CDD\|371425
NZ_CP040247.1\|WP_019732280.1\|1826435_1827254_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
NZ_CP040247.1\|WP_011724988.1\|1825734_1826328_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP040247.1\|WP_003876695.1\|1822187_1822841_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|188314
NZ_CP040247.1\|WP_009976824.1\|1807662_1808082_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|365807
NZ_CP040247.1\|WP_023861579.1\|1820814_1821252_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366161
NZ_CP040247.1\|WP_033711481.1\|1819393_1819795_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319943
NZ_CP040247.1\|WP_062887756.1\|1822864_1824685_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953

Protein	Function_ID	Function_description	E-value
NZ_CP040247.1\|WP_062887792.1\|1815287_1816763_-\|biotin-carboxylase	gnl\|CDD\|180605	PRK06524, PRK06524, biotin carboxylase-like protein; Validated.	0
NZ_CP040247.1\|WP_011724991.1\|1819748_1820591_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	2.55315e-14
NZ_CP040247.1\|WP_033722653.1\|1808634_1809078_-\|Hsp20-family-protein	gnl\|CDD\|365807	pfam00011, HSP20, Hsp20/alpha crystallin family. Not only do small heat-shock-proteins occur in eukaryotes and prokaryotes but they have also now been shown to occur in cyanobacterial phages as well as their bacterial hosts.	2.33587e-28
NZ_CP040247.1\|WP_062887208.1\|1812578_1814165_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.08371e-06
NZ_CP040247.1\|WP_009976825.1\|1807029_1807350_-\|J-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	1.61446e-18
NZ_CP040247.1\|WP_062887621.1\|1810823_1811108_-\|DUF3024-domain-containing-protein	gnl\|CDD\|371425	pfam11225, DUF3024, Protein of unknown function (DUF3024). This family of proteins has no known function.	1.06627e-17
NZ_CP040247.1\|WP_011724993.1\|1818931_1819243_-\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	7.22654e-12
NZ_CP040247.1\|WP_011724997.1\|1809242_1810472_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	1.4884e-178
NZ_CP040247.1\|WP_137987588.1\|1808194_1808575_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	3.03029e-36
NZ_CP040247.1\|WP_132160223.1\|1817731_1818817_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.04144e-15
NZ_CP040247.1\|WP_011725000.1\|1805570_1806977_+\|acyltransferase	gnl\|CDD\|334202	pfam00668, Condensation, Condensation domain. This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyzes a condensation reaction to form peptide bonds in non- ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pfam00550). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site.	3.46822e-19
NZ_CP040247.1\|WP_062887757.1\|1824829_1825714_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	5.62765e-31
NZ_CP040247.1\|WP_019732280.1\|1826435_1827254_+\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	1.46156e-44
NZ_CP040247.1\|WP_011724988.1\|1825734_1826328_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	4.04646e-08
NZ_CP040247.1\|WP_003876695.1\|1822187_1822841_+\|HD-domain-containing-protein	gnl\|CDD\|188314	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.	4.97586e-13
NZ_CP040247.1\|WP_009976824.1\|1807662_1808082_-\|Hsp20-family-protein	gnl\|CDD\|365807	pfam00011, HSP20, Hsp20/alpha crystallin family. Not only do small heat-shock-proteins occur in eukaryotes and prokaryotes but they have also now been shown to occur in cyanobacterial phages as well as their bacterial hosts.	1.2009e-29
NZ_CP040247.1\|WP_023861579.1\|1820814_1821252_+\|hypothetical-protein	gnl\|CDD\|366161	pfam00553, CBM_2, Cellulose binding domain. Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.	2.98001e-36
NZ_CP040247.1\|WP_033711481.1\|1819393_1819795_-\|glyoxalase	gnl\|CDD\|319943	cd08355, TioX_like, Micromonospora sp. TioX and similar proteins. Micromonospora sp. TioX is encoded by a gene of the thiocoraline biosynthetic gene cluster. Thiocoraline is a thiodepsipeptide with potent antitumor activity. TioX may be involved in thiocoraline resistance or secretion. TioX belongs to vicinal oxygen chelate (VOC) superfamily that is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.26108e-32
NZ_CP040247.1\|WP_062887756.1\|1822864_1824685_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	0

>NZ_CP040247.1|WP_062887792.1|1815287_1816763_-|biotin-carboxylase
MTHAGEPQPRRALNGLSDIRAFFHTNSVPLYFISPTPFNLLGIDRWIRNFFYLTYFDSFEGIHSRVFVPRRRDRIDFDSMGDVCNHLLRDPETLEFIAGRGPGGKACFVMMDEETQALARQAGLQVMHPPVELRNRLGSKTVMTRLADEAGIPSVPHVMGRAGSYQELLTLAQDAGLGDDLVISIPYGAAGSGTFFVRGQRDWDEHAGDLTAQQEFKVMKRIRNVEVCLEGAVTRHGTVIGPAMTSLVGYPELTPHRGAWCGNDIWREVLPPGQTHAARQMVGKLGDILSREGYRGYFEVDLLHDLDSDELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYELDIEGINARWERGYGEDEVWGQVILAETSPDVELFTATPRTGVWRIDDDGRVSFSRTANDWATLLDGSEAFYMRVAAPGDLRSEGAQLGVLVTRGHLQTDDYRLTERCQRWVKGMKAKFASTPLAPATPIVSRLVARA
>NZ_CP040247.1|WP_062887208.1|1812578_1814165_-|IS21-family-transposase
MRTRVEQFAAIRRDRRVEGLSIRALADKYRVHRRTVRQALDSAVPPPRKTGPRAAPRLEPFKAAIDEMLRSDLDAPKKQRHTARRVLARLVDEHDAAGLSYSTVRDHIRKRRPQIAAEAGRALEAGFVPQTYRPGAEAEVDFHDLWVMLAGVKTKTALFTMRLSFSGRAAHRAFATQGQEAFLEGHVYGFDRLGGVPVDKIRYDNLNSAVKQVLFGRSRQENERWIAFRSHYGFEAWYCQPGHDGSHEKGGVEGEGGRFRRNHCVPMPVVDSIDELNAFLAAADDADDRRRIANRANSVGQDWETERQFLQPVADQGFETALTLTPRVDRYAQIMVRCNQYSVPARFIGHRVRVKLSASHVTVYDRTTVVARHPRAVGKGTKVLDLDHYLEILARKPGALPGATALAQARAAKLFTAEHDAWWAAARRVHGDAGGTRVLVEVLLLHRHLDRADVLAGISAALSVGSVNADVVALEARRAAEQRAGLGSPPGGGEGAQVLRLAEHRLIADERPLPSVAPYDTLLGQQSS
>NZ_CP040247.1|WP_062895398.1|1811167_1811746_-|hypothetical-protein
MLVADLQHFLDVGPETPGPARALAEHLGGIVSAASAGDAHTRWETALPCRRRPANRRCPGRITVVRGDAEQPIGWQCSHCGDDGTISNWAASIYDLRRQQLTAAQPRRDIPIDADTAATLRTLPFLDNNCQRAVFAICAHGGELHLTMTAAELDDLIDALAAESNHEPHRRRQRQLDTAYDTLTAATDTPRW
>NZ_CP040247.1|WP_062887621.1|1810823_1811108_-|DUF3024-domain-containing-protein
MPEHARHQVRVECDVAARHLTIVERRAPWREDYGPDWTSFPIARLRYTATTNTWTLYWRDRHLKFHRYDTIDPTPHIHDVLTEIDHNPSGIFWG
>NZ_CP040247.1|WP_011724997.1|1809242_1810472_+|tRNA-4-thiouridine(8)-synthase-ThiI
MHMQCCVLLKYGEMVLKGGNRRWFEQWLLTNLDDALSAWPPEHRPAVRRRGGVLVLFTSPELQDELVALARNLIGISLVQPVWRVPRSARAAETAAVELLRDHCTQDGAPTFAVRCHRRDKRFGLSSEQLAARIGARVRADLGWPVDLSHPELELTVEVDRREIFLGTRTHPGQGGLPVGSSGRAVVLLSGGFDSPVAAYRAMRRGLACDFLHCTGAPFTDASSTYKAYALVRQLTRFQPRSRLYVAAVGRAQRTLAASGAGEAQIVAQRRLYLRLACGLAERIGAQAVVTGDSLGQVASQTLPNLAATEQAATLPVLRPLLGFDKQEILAEARRIGTAEIAMLPDQDCCQLFLPRRVATHAAVDQLLPVEARAGVDTLVGNLLDRMQRFDFGPEAADVESAATASRVG
>NZ_CP040247.1|WP_033722653.1|1808634_1809078_-|Hsp20-family-protein
MVNMLRFDPFFRDIDRLTQQLWGAVPWGTAAQPALVPMDAWRDGEKLVVEFDLPGVLPESLDVNVEHDVLTVRAERPAIDEDRNGVVSERPRGVFSRQVYLGHGLDTDNIHADYVDGVLRLTIPVAEAAKPRKIEVAAGKHQRAINA
>NZ_CP040247.1|WP_137987588.1|1808194_1808575_+|helix-turn-helix-transcriptional-regulator
MRGDPTPRSARGVYGISVASELSGIPPQTLRHYERRGLLTPARSDGGTRRYSDDDLARLKRISQLVDQGVNLVGVARILDLESKNDQLKADYSALELLNAQLKTRQKSERAAAPRQGRGEARREAV
>NZ_CP040247.1|WP_009976824.1|1807662_1808082_-|Hsp20-family-protein
MVLMRTDPFRDLDRWTQQVLGTAARPAVMPMDAWRDGDQFVVEFDLPGVNADSLDLDVERNVLTVRAERPDLDQNREMVSAERPRGVFSRQLFLGDNLDTDKIEANYHDGVLRLTIPVAEKAKPRRIEINHNHRTAINA
>NZ_CP040247.1|WP_009976825.1|1807029_1807350_-|J-domain-containing-protein
MTNPYLVLGVSPTATQAEITRAYRRHLRAHHPDTSPPDSATESSERLSEILAAYALLRDPARRADYDREHRVHQRIRPAVTRVTRIEPADEQPPLRAGPVRWHRRY
>NZ_CP040247.1|WP_011725000.1|1805570_1806977_+|acyltransferase
MPASYQQLHHLRRFSEHAARGLDMARLNIGVWDISGVCDVAAMTEAINAHLRRHDTYHSWFEHRTDGRIVRHTFDDPADIEFAALQRGEMTPTELRAHILATPNPLRWDCFTFGLVQHPDHFTFYMSADHLVIDGMSVGVIFLEIHLTYAALVSGGRPLPLPEPASYHDYCRRQHQHTEALTLQSPQVRAWIRFAEDNGGTLPSFPLPLGDPSVPCGSGVVVAPLMDESQTERFDATCTKAGARFSGGVFACAAFAEYELTGAETYCAITPYDHRSTPAEFVTPGWFASFIPVTFPVAGASFGDAVIAAQASFDSAIGLADVPFDRVLELSSFGGRISKPTGDVHMLSFADARGIPFSGQWDGLNAGIYGDGRSSDQVLMWVNRFDTETTLTVAFPQNPVARDSVERYIRAVRAMCLRVVEHGAAAVPNRRRVVAAVNASAARSTANAADRTDRRLQGAGFGANPVLR
>NZ_CP040247.1|WP_132160223.1|1817731_1818817_-|IS630-family-transposase
MPSPIAVPVVLTDDEREQLQGWARRPKSAQALALRSRIVLACEGDSSNTAIARDLGITRGMVTKWRNRFAADRIEGLLDEPRPGRPRVVGDERIEALITATLETTPPDATHWSTRSMAEHLGLSQSMVSRVWRAFGLAPHKQDSWKLSKDPLFVQKVRDVVGLYLNPPERAVVLCVDEKTQIQALNRTAPVFPMLPGTPARASHDYVRHGTSSLYAALDLATGQVIGALHSRHRAQEFLAFLKKIDAHVPADLDCHVVLDNASTHKTPQVKRWLTAHPRFVLHFTPTSSSWLNLVERWFAELTTKKLRRGTHTSVRQLNTDIRTWIQTWNDNPRPYVWTKTADQILESIANYCKRINDSQH
>NZ_CP040247.1|WP_011724993.1|1818931_1819243_-|DUF732-domain-containing-protein
MIGAVLVGGAGIAAATPQDDAYLAQLRAAGLTWPPKTEEALIAEAHDVCYDLTWGWTPQQIADDLHARLDNKGVTLLDVGSLVNAAHNIYCPGNVCDAPSLCT
>NZ_CP040247.1|WP_033711481.1|1819393_1819795_-|glyoxalase
MTASNPTVWLTLQAHNAPKLIDYYVETFGFVLAARYGDGETVDHAQLNWPEGSGGIMLGSHKPGAEWCREPGTAGGYVVTADPDALYRRVRQHNAEIVRPLAETDYGAREFTVRDPEGNLWSFGDYGGANPPN
>NZ_CP040247.1|WP_011724991.1|1819748_1820591_-|AraC-family-transcriptional-regulator
MVGYRTLDVPEGVHRGMPSSMLTFIVSLDDGVEAADTATALPAARPTPLILGGLHLRASHVRQRRGQAGVQLAVHPLASRALFGLPSAELPVAEYDATAVLGRDIVDLHHRVAEAHRWPDVFALVAQYLIDARRRRDGATVRPEVLHAWHLLQRSRGLMPVTALADAVGVTTRHLATLFRREVGHSPKTVAMLMRFQHATGRIAESARRHGRVDLARVAADTGYSDQAHLSREFVRFAGVPPQRWLAEEFRNIQDGGHLLGSQWEHDCFESDRLVDTASP
>NZ_CP040247.1|WP_023861579.1|1820814_1821252_+|hypothetical-protein
MAGLDNHVKRCRTALHGAVSAVIVAVVAVLGLAIAPVADAAAPMATLTVEHTWQTGFIARFAITNSSTVPLSDWKLEFDMPAGQSVLHTWNSTLTQSGTHYVLTPANWNRVIAPGGSATGGFRGVLTGTYSPPTNCVLNGQYRCT
>NZ_CP040247.1|WP_003876695.1|1822187_1822841_+|HD-domain-containing-protein
MTTTSSIETIADIAIPDTALVREITEFIRDAEDDLLFHHSRRVFLFGALQGRRRGLQPDLELLYAGAMFHDLGLTERYRDSALRFEVDGANAAREFLLHRGVSKADADKVWLGIALHTTPGVPEFLDPEIALVTAGVETDVVGVGRDDLAPEALAAVIAAHPRPDFKTRILQAFNDGMKHRPHSTFGTMNADVLEHFDPTFARDNLVDLILNNGWPE
>NZ_CP040247.1|WP_062887756.1|1822864_1824685_-|long-chain-fatty-acid--CoA-ligase
MTHAPASRPTTLCEAFQATAAKHPDAVALRTLGDATTITWRQYRDRVRAIAAGLAGLGVGNGDTVALMMSNRPEFHLCDTAVLHTGATPFSVYNTNPPELLAYQFDNADNHVVICEGTFLPQVLAAAQQGGTVEHVVCVDGAANGAIGLDQLEASPAAGFDFERSWRAVGPDDVLTIVYTSGTTGPPKGVELTHTNFIENARITEEVGGITHADRAVSYLPDAHAANRWITHYQNLLYGLQITTVGDFKAVLPALTEVRPTLFLGVPRVWIKAKAGLEAAVDAEPAGKRALAKWAFGVGRARARAVSDGRPVGLAEKLRYAFADRLVLSKVRRRLGMDRLRIGVTGAAPIPREVHEFVLGLGIPVCEGYGMTECTAGATVNRPERIKIGTVGTPVPGTEVTVASDGEVLVRGKNVMRGYRKAPEKTAEAIDSDGWLHTGDIGEIDEDGYLRIVDRKKELIINAAGKNMSPTNIENTIAASCPLAGPVVVIGDARAYNTALITLDPDSITEYAHAHGLSGSLRELVRNPAVRAEIEKGMAAANRRLSRVEQIKRYTVLADVWEPGSQYLTPTAKLKRKPIATGYAAQIDAMYTEQGKRSAGHSAASD
>NZ_CP040247.1|WP_062887757.1|1824829_1825714_+|alpha/beta-fold-hydrolase
MFREPRIAYAATTVATHDGAQLHVRSYGSAFGQPIVLIHGFGCRIEYWNPQINALAAKYRVIAYDQRGLGRSTLGSDGVRPDVLGRDLAAVLNAVLAPGERAVLVGHSFGGITIMAWAQRFAAHAVSAVLLANTIAERFSATTMLLPFADRYRHIRRPLITALAGSTMTLPSIRWSRWPLQRMALSRYADRQAVDFIYEILADCRTDVRAVWGAGLSGLDVTAGLEKLTVPTTVVTGTEDRLTPPAVAHRIAETLQVRGSLHRFARFPRAGHCTNIEVPYAFNAEIEQLADATR
>NZ_CP040247.1|WP_011724988.1|1825734_1826328_-|TetR/AcrR-family-transcriptional-regulator
MVMTNPRATNEDLTAKARIRNAALDLYAQYGEDRISLRDIASAAGVTLGLVQHHFKTKAGVRDAVDQLVVDYFAHALAQVPAEGSARHVAAARDEAVARMLRDNPPVVNYVRRAVLDPSEDRLHLLDALIELTRREITALRGSGVASTKRPESTQILGVLIRQMGELLLQPMVDAVWDRVAKPTDARKPRLRITVEN
>NZ_CP040247.1|WP_019732280.1|1826435_1827254_+|CoA-transferase
MQPLIGVTVVSLAVNLPGPLAAARLAELGAAVTKVEPATGDPLAAAAPDWYARLIEHQNVLTLDLKDTGDRAKLDELLAGADLLITSMRPSALHRSGLARPQQKFPRLSLIEIVGHHGEHAETPGHDLNYQAAQGTLTPPHMPKVPIADVLGAERAVSSALAALLQAAKAGAGQRYRVVLEEAAARAGDAVRYGLMGEGAVLGGAYPGYGIYASADGYVALGAIEPHFFARTCQVFGADGSHESLGAAFAAKTTAELEDLARHMDIPLNEVR

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Crispr_ID: NZ_CP040247_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040247_4

4227429-4227560

Orphan

Consensus_repeat	Method
CGCTCGCCGAGGGGCAGGCGCTCGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040247_4

>merge|NZ_CP040247|4|4227429-4227560|CRISPRCasFinder
CGCGCGCCGAGCGTCACGCTGGCGTGACGCCAGAGCCCGACGGTCACGCTGGCGTGACGCTCGCCGAGGGGCAGGCGCTCGCTGAGAGAGGCGCTCGCCGAGAGAGGCGCTCGCCGAGGGGTAGGCGCTCGC

>NZ_CP040247|4|4|4227429-4227560|CRISPRCasFinder
CGCGCGCCGAGCGTCACGCTGGCGT	GACGCCAGAGCCCGACGGTCACGCTGGCGTGA
CGCTCGCCGAGGGGCAGGCGCTCGC	TGAGAGAGGCGCTCGCCGAGAGAGG
CGCTCGCCGAGGGGTAGGCGCTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040247.1\|WP_003874069.1\|4231761_4233018_+\|DUF3068-domain-containing-protein	unknown	unknown	gnl\|CDD\|371444
NZ_CP040247.1\|WP_023895717.1\|4222503_4224150_-\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236239
NZ_CP040247.1\|WP_023895716.1\|4221534_4222464_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP040247.1\|WP_003874076.1\|4239363_4239660_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040247.1\|WP_009979645.1\|4225715_4226651_-\|R2-like-ligand-binding-oxidase	unknown	unknown	gnl\|CDD\|236242
NZ_CP040247.1\|WP_088294882.1\|4230413_4231640_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP040247.1\|WP_003879120.1\|4238774_4239362_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040247.1\|WP_033711072.1\|4234707_4235874_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP040247.1\|WP_033710774.1\|4218477_4219455_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP040247.1\|WP_033710780.1\|4217307_4218462_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
NZ_CP040247.1\|WP_138017807.1\|4216456_4216756_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040247.1\|WP_009979644.1\|4224230_4225649_+\|NADP-dependent-succinic-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|181826
NZ_CP040247.1\|WP_009979649.1\|4229402_4230383_+\|phosphotriesterase	unknown	unknown	gnl\|CDD\|366928
NZ_CP040247.1\|WP_009979647.1\|4226647_4227331_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040247.1\|WP_023895718.1\|4227567_4229277_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173838
NZ_CP040247.1\|WP_033711070.1\|4233026_4234724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040247.1\|WP_019733639.1\|4235955_4236723_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP040247.1\|WP_009979657.1\|4236768_4238250_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143457
NZ_CP040247.1\|WP_033710775.1\|4220072_4221287_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379258
NZ_CP040247.1\|WP_031353758.1\|4219663_4220032_-\|ring-cleavage-extradiol-dioxygenase	unknown	unknown	gnl\|CDD\|319925

Protein	Function_ID	Function_description	E-value
NZ_CP040247.1\|WP_003874069.1\|4231761_4233018_+\|DUF3068-domain-containing-protein	gnl\|CDD\|371444	pfam11271, DUF3068, Protein of unknown function (DUF3068). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.	1.54086e-103
NZ_CP040247.1\|WP_023895717.1\|4222503_4224150_-\|acetolactate-synthase-large-subunit	gnl\|CDD\|236239	PRK08322, PRK08322, acetolactate synthase large subunit.	0
NZ_CP040247.1\|WP_023895716.1\|4221534_4222464_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.62003e-38
NZ_CP040247.1\|WP_009979645.1\|4225715_4226651_-\|R2-like-ligand-binding-oxidase	gnl\|CDD\|236242	PRK08326, PRK08326, R2-like ligand-binding oxidase.	0
NZ_CP040247.1\|WP_088294882.1\|4230413_4231640_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	7.479e-46
NZ_CP040247.1\|WP_033711072.1\|4234707_4235874_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.92444e-52
NZ_CP040247.1\|WP_033710774.1\|4218477_4219455_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.57888e-26
NZ_CP040247.1\|WP_033710780.1\|4217307_4218462_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
NZ_CP040247.1\|WP_009979657.1\|4236768_4238250_+\|aldehyde-dehydrogenase	gnl\|CDD\|143457	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.	0
NZ_CP040247.1\|WP_009979644.1\|4224230_4225649_+\|NADP-dependent-succinic-semialdehyde-dehydrogenase	gnl\|CDD\|181826	PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.	0
NZ_CP040247.1\|WP_009979649.1\|4229402_4230383_+\|phosphotriesterase	gnl\|CDD\|366928	pfam02126, PTE, Phosphotriesterase family.	3.54084e-157
NZ_CP040247.1\|WP_009979647.1\|4226647_4227331_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.86081e-11
NZ_CP040247.1\|WP_023895718.1\|4227567_4229277_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	1.41675e-27
NZ_CP040247.1\|WP_019733639.1\|4235955_4236723_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.28725e-21
NZ_CP040247.1\|WP_003879120.1\|4238774_4239362_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.17419e-10
NZ_CP040247.1\|WP_033710775.1\|4220072_4221287_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	4.14348e-17
NZ_CP040247.1\|WP_031353758.1\|4219663_4220032_-\|ring-cleavage-extradiol-dioxygenase	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	7.73549e-27

>NZ_CP040247.1|WP_009979647.1|4226647_4227331_-|TetR/AcrR-family-transcriptional-regulator
MPTVTWARVDPARRAAIIEAAESEFGAHGFSRGSLNVIARKAGVAKGSLFQYFADKRDLYAFIADIGSQRVRGYIEQLIRELDPTRPFFEFLTDLLDGWVAYFADHPHERALHAAATLEVDTEARISVQNVIHRHYLEVLRPLVRDARLRGDLRADSDTDALLSLLLLIFPHLALAPYMRGLDPVLGLDEPTPEQPALAVRRLVAVLAAAFSPAPAHFATPRSEEVT
>NZ_CP040247.1|WP_009979645.1|4225715_4226651_-|R2-like-ligand-binding-oxidase
MNRTRSASMVQGGLNWDSLPLKLFAGGNAKFWNPADIDFSRDRADWERLTDDERSYATRLCAEFIAGEESVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTDDLHHFLDDVPSYRTIFYEELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDLSVDEFMAYASDKGMRRFGTIASARGRPLAEIDLDYTPVQLEDTFADEDARALAAV
>NZ_CP040247.1|WP_009979644.1|4224230_4225649_+|NADP-dependent-succinic-semialdehyde-dehydrogenase
MPIATINPATGETVKTFTPASDAEVDAAIARAYERFLDYRHSTTFAQRAQWANATADLLEAEADEVAAMMTLEMGKTLKSAKAEALKCAKGFRYYAQNAEQLLADEPADAGKVGAARAYIRYQPLGVVLAVMPWNFPLWQAVRFAAPALMAGNVGILKHASNVPQSALYLADVITRGGFPEGCFQTLLVPSSAVERILRDPRVAAATLTGSEPAGQSVAAIAGDEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDTFVDKFVEQMKALKVGDPTDPATDVGPLATESGRDEIAKQVDDAVAAGATLRCGGKPLDGPGWFYPPTVVTDITKDMALYTEEVFGPVASMYRAADIDEAIEIANATTFGLGSNAWTNDAAEQQRFIDDIEAGQVFINGMTVSYPELGFGGVKRSGYGRELAGLGIRAFCNAKTVWIGSSKSGDAGGGSKVE
>NZ_CP040247.1|WP_023895717.1|4222503_4224150_-|acetolactate-synthase-large-subunit
MSKAAELIVKCLENEGVSVVFGLPGEENIRFVQALAASPIRYVLTRHEQAASFMAEMYGRVTGRAAVVSATLGPGAINMQLGVADATTNSTPLVAISAQVGHDREFKESHQYVDLVSMFAPITRWAAGIPTARAIPEMVRKAFKLAESERPAAVYLAVPEHIDADETDYELGPLPRNVVRPDAPSPRQVERAAQILRNAKRPVVLAGHGAARADATKALVRFSEEFGIQVANTFHGKGVMPDDHPNSIGTLGFMRHDYVNFGFDHADAVIAVGYELQEFDPVRINPQADKKIIHMHRFPAEVDAHYSVDVGIIGDISDSLNALTDALSGHRFEHAADVPGSGLLTDEFARGQQDSRYPLAPARVVADTRAALGRSDVVLVDTGATKMWMARLYPTYERNTCLISNGLSTMSFALPGALGVKLAQPESKVLAVVGDGAFLMNSQEIETAVRERIPLVVLIWEDGGYGLIEWKMDLELGAHYYVKFANPDVVTYAESFGAKGYRISHADELLPTLRAALDDDGVSLISCPVDYSENLRLTNRLGELDETL
>NZ_CP040247.1|WP_023895716.1|4221534_4222464_-|LysR-family-transcriptional-regulator
MLFRQLEYFVALASERHFARAARACYVSQPALSEAIRKLEQELNVPLVRRGQKFEGLTPEGERLVLWARRILADHDALKQEVAALQTGLTGELRLGVIPAASSIVALLTDPFCAAHPLVRVQLETSLRSAEIVQRLRRFELDAGVLYPDRQDVADLLVTPLYTEQQVLIAGAELLLDPSETISWSDALTLPMCLLNQGMRGRRLIDDALATLELTVTPQLETDSVATLLAHVGTGRWASIIPQTWIHSLRPPAGARILRLENPTVTATVALVTSATEPGSVLTRALVQTARGAGINDVLRKAAPGYSAG
>NZ_CP040247.1|WP_033710775.1|4220072_4221287_-|PucR-family-transcriptional-regulator
MKDLRAPVNGVDGDSASALVAVPKSQGAQTIRPDSVSRLVGALLDDHAAVVGRVRSVIRSRLPVYRSVADEALEAELEWVLRSAVGGREALHEPQIAGLAAIGEARARDGVPVDDMLRAWRIGVEVVVECAREAARRLGVDDARVLELVQSALAWSDIAMATSAKAHRRTERALALEAEESDAEFVRGALMGSLPAAELRMHAELRGLDPGAEYVAVRARLGGDGPHLRLEQSLGFQDPAHSRRGLCALLDGDLAGFLIEPPRDVEGVVGFGPPRPLTRLSESYRMAARALVTAEACGLRGAYDIAALGLRTAVAIDADVGELLRKRYLEPLSVGGSSRELIATVRTYLACGMHVERTATRLFVHQNTVRYRLARFEELTGASLRDTEVVTEVWWVLELAAMRL
>NZ_CP040247.1|WP_031353758.1|4219663_4220032_-|ring-cleavage-extradiol-dioxygenase
MRRVDYVIQYVESLERSVTFYRDVIGLEVRIEGDGYVEFEMPNTKFSLFERSKLFELIGREGGTAPCGEIGFLVDDVDEEATRLRGLGVEILSGPVDRPWRERTLHIADPDGNVIEFAQKLR
>NZ_CP040247.1|WP_033710774.1|4218477_4219455_-|aromatic-acid-exporter-family-protein
MWPIAQTTVAAGLAWYLAHDVLDHREPFFAPIAAAVCLWMTNRVRAELAVEMIIGVALGIGAGTVVLAVFGAGPIGMGAAVMLSLTLAVLIARSFSTQRSMFVNQSVISAILIMAFPHTGLGVERLYDALIGGGLAVVFSILLFPKNPLAVLHDASGELLTALHDILAQICCRSTDSASPDQGWALSAADRLQRCSASLIEARGTAGQLARVCPRRWPLRGAVGAADRQAVHVALFGSSVLQLARTLTSVRIPGGPHAEAFRAAVDDLRDAVSALAAGHPETAAAHAESARRHSAALPAGSPASVAVVIDACIDELQQAIGPRRS
>NZ_CP040247.1|WP_033710780.1|4217307_4218462_+|NAD-dependent-formate-dehydrogenase
MAKCVMVLYPDPVDGYPPKYARDSIPVIHSYPDGSSLPTPSKIDFTPGELLGCVSGALGLRKFFEDGGHELVVTSDKDGPDSEFERELPDADIVISQPFWPAYITKERFAKARNLKLALTAGIGSDHVDLAEAQARGVTVAEETWSNSISVAEHTVMQILALVRNFVPSHQWIRDGGWNIADCVQRSYDVEGMDVGVIAAGRIGRAVLERMKPFGVNLHYFDVHRLSPEYEKQLGVTYHPDVESLARSVDVVSIHSPLIAQTHHMFNEKLLKSMRRGSYIVNTARAEETDHKAIVAALESGQLAGYAGDVWFPQPPPPDHPWRTMPNHAMTPHISGSSLSAQARYCAGTREILEDWFAGRPIRSEYLIVEGGKFAGTGAKSYAQ
>NZ_CP040247.1|WP_138017807.1|4216456_4216756_-|hypothetical-protein
MQDETLAVIRSLVSDGLVRLGAQVMVGEHLGGVATEGERFVAWDQPLERSMHKISHVYLKHYDDPEQWMYAAWMQLTDEGEQLARSFEQADLDSYRKFQ
>NZ_CP040247.1|WP_023895718.1|4227567_4229277_-|acyl-CoA-dehydrogenase
MLLNPNHLQRRYPDRRSAEIMAATVDFFESRGKARLKSDDHERVWYSDFLEHIGRERIFASLLTPTRYGAPDCRWDTYRISGFAEILGFYGLNYWYPFQVTALGLGPIWMSDNDQAKRKAAGLLEAGEVFAFGLSEQTHGADVYQTDMNLTPAPGGGWTAAGQKYYIGNANVARMVSTFGKFAGGTTDSEYVFFAADSRHERYRLIKNVVNSQNYVGNFALSDYPVTEADILHRGPEAFHAALNTVNVCKYNLGWGAVGMCTHAMYEAVTHASNRILYGTVVTDFSHVRRLLIDAYARLVAMRLVATRACDYMRSASATDRRYLLYSPLTKAKITGEGERVITALWDVIAAKGVEKDTIFEAMTREIGLLPRLEGTVHINIGLLGKFMPNYLFAPSGELPVIGRRDDAADDEFLFAQGPTGGLGKVRFGDWRAPFNGFAHLPNVALLRAQIDVLAEMLASATPDALQQKDIDFAFAVGQLFATVPYAQLILEEATLSGVDDALIDEIFGVLVRDFNTYAVELSDKPATTEQQARFAMRMIRRPVHDPARYDQIWKEQVLPLSGAYQMRP
>NZ_CP040247.1|WP_009979649.1|4229402_4230383_+|phosphotriesterase
MSELNTARGPIDTAALGVTLMHEHVFIMTTEIAQNYPEAWGDEEQRVADAIDRLNELKARGVDTIVDLTVIGLGRYIPRIARVAAATELNIVVATGLYTYNDVPFYFHYLGPGAELGGPEIMTDMFVRDIEQGIADTGIKAGILKCATDAPGVTPGVERVLRAVAQAHKRTGVPISTHTHAGLRRGLDQQRIFEEEGVDLSRVVIGHSGDSTDVGYLEELIAAGSYLGMDRFGIDAISPFEDRVNIVAQMCERGHADKMVLSHDANCYFDALPEELVPQVMPNWHYLHIHNDVIPALKQRGVTDEQLHTMLVDNPRRIFERQGPYG
>NZ_CP040247.1|WP_088294882.1|4230413_4231640_-|acyltransferase
MPGCTRSPGRAHRQTVVVSDDQRVGGVRSFLPAVEGMRACAAMGVVVTHVAFQTGHSSGVDGRLFGRFDLAVAVFFALSGFLLWRGHAAAARDLAPRPRTGHYLRSRVVRIMPAYLVAVVVILTLLPDADHPSPTVWLANLTLTQIYVPLTLTGGLTQMWSLSVEVGFYLALPVLALLARRLPVTARVPAIATLGALSWAWGWVPVHPGSGLNPLNWPPAFFSWFAAGMLLAEWVHGGIGRPVRLAQSRTGRVLLAVVAVAAYLVAASPLAGPEGLVPGTPAQFAVKTAMGSLVAFALIAPLVLDRMDTPHRVLGTTVMVTLGRWSYGLFIWHLAALAMVFPVLGTFPFTGRMPAVLVLTLIFGFAIAAVSYALVESPCREALRRWGKRHQPAAPRQLIDAEADAIAP
>NZ_CP040247.1|WP_003874069.1|4231761_4233018_+|DUF3068-domain-containing-protein
MNRAVMLRFAACGIIGLGAALLIAALLLTTYTTSRITKVPLDVDATLISDGTGTALDSASLSTDHVVVNQNVPLVSQQQISVESPANADVVTLQVGSSLRRTDKQKDTGLLLAIVDTVTLNRKTATAVSDDTHTGGAVQKPRTINDENPPTAIPLRHDGLSYRFPFHTEKKTYPYFDPIAQKPFDVNYDSQEDVNGLTTYKFTQNVGYNADGKLVAPVAYPSLYADQATDSKFTAPASMWGIQGGDPNEQITMTRFYAAQRTFWVDPVSGTIVKQTEHAHHYFARDPLKPELTLADYKVTSNEDTVESQVNAARDERDRLALWSRVLPITFTAVGLIALVGGGLLASFSLRSESALTDPGLDRGDQDFFGRSGLEEPVSGAEAETEKLPTQRPDLRSESGPDEPTEAGPTEAKPPDRE
>NZ_CP040247.1|WP_033711070.1|4233026_4234724_+|hypothetical-protein
MRWTRPGYALVLALLVVGPLLRPGYLLLRDAVSTPRSYLSDTALGLTAAPRAAPQDFAVALASHLLDGGVVVKTLLLLGLWLAGWGAARLVALVLPGAGMPGEFVATTLAIWNPYVAERLLQGHWSLLVGYGCLPWVATAMLGLRTGGAGFFGLAFFIALAGLTPTGLLLAAAVALACVPVAGAGRRRWVCAAAAIGAAAVAALPWLVAAVTGAALPSHTPANRLGVEAFAPRAEPGLGTLTSLASLGGIWNADAVPGSRTTLFAVASAVVLLGVVAVGLPAVARRPAAVPLLVLAAAAVLIPAGLATGPGLRLLGAVVDAAPGVGVLRDGQKWVALAVPGYALAGAGAVLTLRRRLFGAAAPALVCCLALILALPDLVWGVGGRVSPVRYPRGWPAVAAAINARPDAVAVLPAGTMRLFSWSGPAPVLDPLPRWVRADVLSTGDLVISGTTIAGEGAHARAVQELLLSGPDPAALAAAGVGWLVLEADSAGEVGAAAHTLGAAAPVYRDDEIALYRIGGHTAGVAADRRAATLIAHLAWLVLLLGSGAGVLLGACRRRGVSRAR
>NZ_CP040247.1|WP_033711072.1|4234707_4235874_-|glycosyltransferase-family-4-protein
MSSLRSVLLLCWRDTGHPQGGGSEAYLQRIGAQLAAAGIAVTLRTARYPGAPRRDVVDGVRISRAGGRYSVYIWALLAMAVARLGLGPLRAVRPDVVVDTQNGLPFLARLIYGRRVVVLVHHCHREQWPVAGPVLGRLGWFVESTLSPRLNRRNQYVTVSLPSARDLVALGVDGTRIAVVRNGLDEAPAPSLSGPRAAAPRVVVLSRLVPHKQIEDALEAVARLRPRVPGLHLDIVGDGWWRQRLVEHVDRLGIGSAVTFHGHVDDVTKHHVLQGAWVHLLPSRKEGWGLAVVEAAQHRVPTIGYRSSGGLSDSIVDEVTGILVDTHAELVDRLEQLLADPVLRDQLGAKAHTRSGEFSWAQSADAMRGVLEAVQAGRTVSGLVSGRG
>NZ_CP040247.1|WP_019733639.1|4235955_4236723_+|class-I-SAM-dependent-methyltransferase
MAVTDIFARRATLARSVRLLSQFRYERSEPARFYGALAADTAAMVDDLWRAGHGESAAGRTLLDVGGGPGYFAAAFTDAGVRYLGVEPDPGEMHAAGPVVAADTGTFVRASGMALPFADDSVDICLSSNVAEHVPRPWQLGAEMLRVTRPGGLAVLSYTVWLGPFGGHEMGLTHYLGGARAAARYARKHGHPAKNNYGSSLFEVSVADGLAWAASTGAALAAFPRYHPRWAWWLTSVPVLREFLVSNLVLVLQPQ
>NZ_CP040247.1|WP_009979657.1|4236768_4238250_+|aldehyde-dehydrogenase
MSDIQTQAKTEYDKLFIGGKWTEPSTSEVIEVHCPATGEYVGKVPLAAAADVDAAVAAARAAFDNGPWPTTPPKERAAVIANALKVMEERKDLFTGLLAAETGQPPTSVETMHWMSSIGALNFFAGPAVDQVKWKEVRTGGYGQSIVHREPIGVVGAIVAWNVPLFLAVNKLGPALLAGCTVVLKPAAETPLSANALAEAFAEAGLPEGVLSVVPGGIETGQALTSNTDVDIFSFTGSSAVGREIGRRAADMLKPCTLELGGKSAAIVLDDVDLPSALPMLVFSGIMNSGQACVAQTRILAPRSRYDEIVDAVSTFVQSLPVGLPSDPAAQIGSLISEKQRARVEGYIAKGIEEGARLVCGGGRPEGLDSGFFVQPTVFADVDNKMTIAQEEIFGPVLSIIPYDTEEDAIKIANDSVYGLAGSVWTADVQRGIAVSEKIRTGTYAINWYAFDPCCPFGGYKNSGIGRENGPEGVEHFTQQKSVLMPMGYTLEG
>NZ_CP040247.1|WP_003879120.1|4238774_4239362_+|TetR/AcrR-family-transcriptional-regulator
MLASAAEVMRERGAAGVTIDAVLARSGAPRGSVYYHFPDGRNQILAEALRYSGDSITALIDQAAGRGGRALLREFVEYWERLLTEGGFTAGCPVVAAAIGCSEDEGPKLSAEAGAILGRWCTALTRAFVNDGFDDADAASLAVMSIAALEGGIVLSRSTRNAGPLHQVGEQLEFLIKAREFVVRNKIPGKQPGSR
>NZ_CP040247.1|WP_003874076.1|4239363_4239660_-|hypothetical-protein
MIKNGTRLASQVCDTQVIVVRSADSLDDLRCGGVPMVPVGAERSGELDPSFADGTVMGKRYVDETGAEVLVTKPGAGSLSIGQTPLQLKEVKPLPASD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040247_2	2.1\|1007240\|25\|NZ_CP040247\|CRISPRCasFinder	1007240-1007264	25	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	34490-34514	4	0.84
NZ_CP040247_2	2.1\|1007240\|25\|NZ_CP040247\|CRISPRCasFinder	1007240-1007264	25	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	481677-481701	4	0.84
NZ_CP040247_2	2.1\|1007240\|25\|NZ_CP040247\|CRISPRCasFinder	1007240-1007264	25	NC_031122	Gordonia phage Eyre, complete genome	22215-22239	4	0.84
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	279167-279198	6	0.812
NZ_CP040247_1	1.4\|676758\|35\|NZ_CP040247\|CRISPRCasFinder	676758-676792	35	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	620134-620168	8	0.771
NZ_CP040247_1	1.4\|676758\|35\|NZ_CP040247\|CRISPRCasFinder	676758-676792	35	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1192931-1192965	8	0.771
NZ_CP040247_1	1.4\|676758\|35\|NZ_CP040247\|CRISPRCasFinder	676758-676792	35	MN694530	Marine virus AFVG_250M438, complete genome	7767-7801	8	0.771
NZ_CP040247_1	1.4\|676758\|35\|NZ_CP040247\|CRISPRCasFinder	676758-676792	35	MN694240	Marine virus AFVG_250M436, complete genome	8280-8314	8	0.771
NZ_CP040247_1	1.4\|676758\|35\|NZ_CP040247\|CRISPRCasFinder	676758-676792	35	MN694170	Marine virus AFVG_250M437, complete genome	30879-30913	8	0.771
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MF141540	Mycobacterium phage Avocado, complete genome	31893-31924	8	0.75
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MK016494	Mycobacterium phage Filuzino, complete genome	35298-35329	8	0.75
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	619056-619087	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1050461-1050492	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	686591-686622	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	236107-236138	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	1603189-1603220	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	619056-619087	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MN369749	Mycobacterium phage MinionDave, complete genome	36157-36188	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MT684597	Mycobacterium phage Mandlovu, complete genome	34776-34807	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MN585973	Mycobacterium phage StAnnes, complete genome	36599-36630	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MT684593	Mycobacterium phage Moonbeam, complete genome	35674-35705	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MN586005	Mycobacterium phage Lorde, complete genome	34870-34901	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NC_048729	Mycobacterium phage Renaud18, complete genome	36966-36997	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MH077580	Mycobacterium phage Melissauren88, complete genome	35620-35651	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MT684595	Mycobacterium phage Mova, complete genome	35440-35471	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NC_011288	Mycobacterium phage Fruitloop, complete genome	37164-37195	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MN369752	Mycobacterium phage Flathead, complete genome	36671-36702	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	KR824843	Mycobacterium phage Ovechkin, complete genome	36001-36032	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MK494118	Mycobacterium phage Cornucopia, complete genome	37451-37482	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MF668270	Mycobacterium phage Emma, complete genome	35718-35749	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	KF114874	Mycobacterium phage Bobi, complete genome	36949-36980	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	KM652553	Mycobacterium phage CaptainTrips, complete genome	35382-35413	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	JN699012	Mycobacterium phage SG4, complete genome	35380-35411	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MN586004	Mycobacterium phage Strokeseat, complete genome	34833-34864	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MN585987	Mycobacterium phage Enby, complete genome	34895-34926	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	MT684601	Mycobacterium phage Hlubikazi, complete genome	34834-34865	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	KT281795	Mycobacterium phage XFactor, complete genome	35328-35359	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NC_025433	Mycobacteriophage Taj, complete genome	36887-36918	9	0.719
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	323951-323982	10	0.688
NZ_CP040247_4	4.1\|4227454\|32\|NZ_CP040247\|CRISPRCasFinder	4227454-4227485	32	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	719994-720025	10	0.688

1. spacer 2.1|1007240|25|NZ_CP040247|CRISPRCasFinder matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

tgcgctctgcatcgtcgtggcgcgt	CRISPR spacer
gacgctcttcatcgtcgtggcgcgg	Protospacer
 .****** ***************

2. spacer 2.1|1007240|25|NZ_CP040247|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

tgcgctctgcatcgtcgtggcgcgt	CRISPR spacer
cgcgctcttcttcgtcgtggcgcgc	Protospacer
.******* * *************.

3. spacer 2.1|1007240|25|NZ_CP040247|CRISPRCasFinder matches to NC_031122 (Gordonia phage Eyre, complete genome) position: , mismatch: 4, identity: 0.84

tgcgctctgcatcgtcgtggcgcgt	CRISPR spacer
ggcgctctgcatcgtcgtcgcgggc	Protospacer
 ***************** *** *.

4. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

gacgccagagcccgacggtcacgctggc-gtga	CRISPR spacer
gcacccagagccagacggtgacgctggctgtg-	Protospacer
*   ******** ****** ******** ***

5. spacer 1.4|676758|35|NZ_CP040247|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccgacggcgcagcg	CRISPR spacer
agggcgcggcgggtgccggatccgacggggccgac	Protospacer
.**  *************** ******* ** *

6. spacer 1.4|676758|35|NZ_CP040247|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccgacggcgcagcg	CRISPR spacer
agggcgcggcgggtgccggatccgacggggccgac	Protospacer
.**  *************** ******* ** *

7. spacer 1.4|676758|35|NZ_CP040247|CRISPRCasFinder matches to MN694530 (Marine virus AFVG_250M438, complete genome) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccga-cggcgcagcg	CRISPR spacer
tggtggcggcgggcggcggagccgacccgctcgac-	Protospacer
 ************.* ********* * ** *..*

8. spacer 1.4|676758|35|NZ_CP040247|CRISPRCasFinder matches to MN694240 (Marine virus AFVG_250M436, complete genome) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccga-cggcgcagcg	CRISPR spacer
tggtggcggcgggcggcggagccgacccgctcgac-	Protospacer
 ************.* ********* * ** *..*

9. spacer 1.4|676758|35|NZ_CP040247|CRISPRCasFinder matches to MN694170 (Marine virus AFVG_250M437, complete genome) position: , mismatch: 8, identity: 0.771

gggtggcggcgggtgccggagccga-cggcgcagcg	CRISPR spacer
tggtggcggcgggcggcggagccgacccgctcgac-	Protospacer
 ************.* ********* * ** *..*

10. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MF141540 (Mycobacterium phage Avocado, complete genome) position: , mismatch: 8, identity: 0.75

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agcgccagagcacgacggacacgctgtggtcg	Protospacer
..********* ****** *******  ** .

11. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MK016494 (Mycobacterium phage Filuzino, complete genome) position: , mismatch: 8, identity: 0.75

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
aattccctagcccgacggtcacgccgccgtgt	Protospacer
.*. **  ****************.* ****

12. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
aataccagagcccgacggccgcgctggctacc	Protospacer
.*..**************.*.*******

13. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
aataccagagcccgacggccgcgctggctacc	Protospacer
.*..**************.*.*******

14. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
aataccagagcccgacggccgcgctggctacc	Protospacer
.*..**************.*.*******

15. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
aataccagagcccgacggccgcgctggctacc	Protospacer
.*..**************.*.*******

16. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
aataccagagcccgacggccgcgctggctacc	Protospacer
.*..**************.*.*******

17. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
aataccagagcccgacggccgcgctggctacc	Protospacer
.*..**************.*.*******

18. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MN369749 (Mycobacterium phage MinionDave, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

19. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MT684597 (Mycobacterium phage Mandlovu, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

20. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MN585973 (Mycobacterium phage StAnnes, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

21. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MT684593 (Mycobacterium phage Moonbeam, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

22. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MN586005 (Mycobacterium phage Lorde, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

23. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NC_048729 (Mycobacterium phage Renaud18, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
cgttccctagcccgacggtcacgccgccgtgt	Protospacer
 .. **  ****************.* ****

24. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MH077580 (Mycobacterium phage Melissauren88, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

25. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MT684595 (Mycobacterium phage Mova, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

26. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NC_011288 (Mycobacterium phage Fruitloop, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

27. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MN369752 (Mycobacterium phage Flathead, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
cgttccctagcccgacggtcacgccgccgtgt	Protospacer
 .. **  ****************.* ****

28. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to KR824843 (Mycobacterium phage Ovechkin, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
cgttccctagcccgacggtcacgccgccgtgt	Protospacer
 .. **  ****************.* ****

29. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MK494118 (Mycobacterium phage Cornucopia, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

30. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MF668270 (Mycobacterium phage Emma, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

31. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to KF114874 (Mycobacterium phage Bobi, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

32. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to KM652553 (Mycobacterium phage CaptainTrips, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

33. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to JN699012 (Mycobacterium phage SG4, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

34. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MN586004 (Mycobacterium phage Strokeseat, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

35. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MN585987 (Mycobacterium phage Enby, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

36. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to MT684601 (Mycobacterium phage Hlubikazi, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

37. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to KT281795 (Mycobacterium phage XFactor, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
agttccctagcccgacggtcacgccgccgtgt	Protospacer
... **  ****************.* ****

38. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NC_025433 (Mycobacteriophage Taj, complete genome) position: , mismatch: 9, identity: 0.719

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
cgttccctagcccgacggtcacgccgccgtgt	Protospacer
 .. **  ****************.* ****

39. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 10, identity: 0.688

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
cgctggagaacccgacgggcacgctggcgccg	Protospacer
 .*   ***.******** **********. .

40. spacer 4.1|4227454|32|NZ_CP040247|CRISPRCasFinder matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 10, identity: 0.688

gacgccagagcccgacggtcacgctggcgtga	CRISPR spacer
cgctggagaacccgacgggcacgctggcgccg	Protospacer
 .*   ***.******** **********. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37763 : 78324

Brevibacillus_phage(50.0%)

transposase,integrase

attL 48042:48101|attR 57865:57998

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007172236.1\|37763_39002_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	1.9e-06	23.6
WP_040624285.1\|39415_39595_+	hypothetical protein	NA	NA	NA	NA
WP_080691069.1\|39879_40686_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_007172240.1\|40732_42298_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_007172469.1\|44252_44714_-	hypothetical protein	NA	NA	NA	NA
WP_047324300.1\|44703_46950_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_033717226.1\|46958_48041_-\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	5.5e-10	29.9
48042:48101	attL	NA	NA	NA	NA
WP_131727298.1\|49795_50320_+	hypothetical protein	NA	NA	NA	NA
WP_007172252.1\|50193_50973_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_007172254.1\|51325_51775_-	SRPBCC family protein	NA	NA	NA	NA
WP_007172255.1\|52084_52792_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007172469.1\|54074_54536_-	hypothetical protein	NA	NA	NA	NA
WP_033717226.1\|56781_57864_-\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	5.5e-10	29.9
WP_095764629.1\|60642_61476_+	hypothetical protein	NA	NA	NA	NA
57865:57998	attR	NA	NA	NA	NA
WP_085981747.1\|61553_62267_+	ABC transporter permease	NA	NA	NA	NA
WP_033721558.1\|62269_63139_+	ABC transporter permease	NA	NA	NA	NA
WP_007172259.1\|63145_64363_+	MCE family protein	NA	NA	NA	NA
WP_007172260.1\|64359_65403_+	MCE family protein	NA	NA	NA	NA
WP_007172261.1\|65399_66965_+	MCE family protein	NA	NA	NA	NA
WP_007172262.1\|66961_68476_+	virulence factor Mce family protein	NA	NA	NA	NA
WP_033721559.1\|68478_69606_+	virulence factor Mce family protein	NA	NA	NA	NA
WP_007172264.1\|69611_71156_+	MCE family protein	NA	NA	NA	NA
WP_019733492.1\|72236_73703_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_007172267.1\|74908_75832_-	hypothetical protein	NA	NA	NA	NA
WP_011724019.1\|77019_78324_-\|transposase	IS256-like element IS666 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.1e-210	83.4

DBSCAN-SWA_2

88996 : 179581

Enterobacteria_phage(30.0%)

transposase,integrase

attL 98799:98858|attR 131618:132749

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062887208.1\|88996_90583_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_062895396.1\|90579_91371_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.0e-29	34.9
WP_062895398.1\|91416_91995_+	hypothetical protein	NA	NA	NA	NA
WP_062887574.1\|91999_92338_+	DUF3024 domain-containing protein	NA	NA	NA	NA
WP_007172277.1\|92440_92728_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_007172278.1\|92754_93207_-	hypothetical protein	NA	NA	NA	NA
WP_050485493.1\|93194_94316_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_085981753.1\|94698_95466_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.2e-32	34.2
WP_079669096.1\|95504_97013_-\|transposase	IS21 family transposase	NA	NA	NA	NA
98799:98858	attL	NA	NA	NA	NA
WP_007172498.1\|100044_101094_+\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	3.8e-08	27.1
WP_007172497.1\|101090_103034_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_137987484.1\|103288_103474_-	hypothetical protein	NA	NA	NA	NA
WP_033721569.1\|103857_105366_-	carboxylesterase/lipase family protein	A0A0M4JT58	Mollivirus	8.1e-28	32.8
WP_033721570.1\|105498_106395_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_007172283.1\|106447_106888_-	PaaI family thioesterase	NA	NA	NA	NA
WP_033721572.1\|106936_107581_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007172286.1\|107704_109198_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA
WP_007172287.1\|109194_110292_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_007172600.1\|110334_111543_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007172288.1\|111813_112359_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_007172562.1\|115665_118599_-	MMPL family transporter	NA	NA	NA	NA
WP_007172563.1\|118595_119015_-	hypothetical protein	NA	NA	NA	NA
WP_007172294.1\|119119_120313_-	cytochrome P450	NA	NA	NA	NA
WP_033717422.1\|120378_120960_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_033717424.1\|121605_122229_-	hypothetical protein	NA	NA	NA	NA
WP_087139652.1\|122213_122825_-	hypothetical protein	NA	NA	NA	NA
WP_007172298.1\|123515_124592_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_007172299.1\|124588_124912_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007172300.1\|125052_126180_+\|integrase	integrase	NA	NA	NA	NA
WP_047324308.1\|127787_129299_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.0e-54	33.0
WP_080687315.1\|129959_130142_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011725525.1\|130325_131558_-\|transposase	IS256-like element IS1245 family transposase	A0A220NQR7	Corynebacterium_phage	2.5e-112	51.5
WP_094494180.1\|131676_132789_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-67	44.2
131618:132749	attR	NA	NA	NA	NA
WP_007168379.1\|137571_138216_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007168380.1\|138265_138706_+	PaaI family thioesterase	NA	NA	NA	NA
WP_007168381.1\|138758_139655_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_007168382.1\|139651_139918_+	hypothetical protein	NA	NA	NA	NA
WP_007168383.1\|140447_141896_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.4e-55	35.6
WP_085981614.1\|142603_143233_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_074021704.1\|144632_144824_+	ferredoxin	NA	NA	NA	NA
WP_007168388.1\|145000_145972_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_033712834.1\|146164_147034_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_046184162.1\|147137_147815_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_138017789.1\|147841_148513_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007168396.1\|152141_153665_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_138017790.1\|153661_154729_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_007168400.1\|156261_156918_+	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_033712837.1\|158617_159760_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_062887574.1\|160720_161059_-	DUF3024 domain-containing protein	NA	NA	NA	NA
WP_062895396.1\|161686_162478_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.0e-29	34.9
WP_138017752.1\|166289_166421_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_007168406.1\|168282_168558_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_007168407.1\|168557_168950_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_007168413.1\|174015_174969_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_007168415.1\|176567_177104_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_080576326.1\|177505_178195_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_109233510.1\|178279_179581_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	5.0e-34	28.4

DBSCAN-SWA_3

3170821 : 3177393

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024636978.1\|3170821_3172987_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	7.4e-208	51.6
WP_003874934.1\|3172956_3173409_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.7e-13	37.7
WP_003874933.1\|3173451_3173691_-	redoxin NrdH	V5UN81	Mycobacterium_phage	2.0e-21	64.5
WP_076220948.1\|3173766_3174033_-	hypothetical protein	NA	NA	NA	NA
WP_062886253.1\|3174220_3174775_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	5.4e-06	33.6
WP_062886254.1\|3174868_3175483_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062886255.1\|3175482_3176526_+	DNA polymerase IV	F1C5A5	Cronobacter_phage	1.5e-20	28.5
WP_062886256.1\|3176460_3177393_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	4.6e-05	35.9

DBSCAN-SWA_4

5182702 : 5240183

Gordonia_phage(16.67%)

tRNA,bacteriocin,integrase,protease,transposase

attL 5184422:5184438|attR 5246838:5246854

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019733270.1\|5182702_5183500_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_033713095.1\|5183496_5184507_-	Dyp-type peroxidase	NA	NA	NA	NA
5184422:5184438	attL	NA	NA	NA	NA
WP_138017810.1\|5184550_5185858_+	M18 family aminopeptidase	NA	NA	NA	NA
WP_019733919.1\|5185877_5186225_+	VOC family protein	NA	NA	NA	NA
WP_003875794.1\|5186225_5186447_-	hypothetical protein	NA	NA	NA	NA
WP_033717192.1\|5186575_5188873_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.0e-268	62.6
WP_050593748.1\|5188892_5189543_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_138017811.1\|5189555_5189942_+	hypothetical protein	NA	NA	NA	NA
WP_085978605.1\|5190007_5191606_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.2e-45	29.7
WP_003877203.1\|5191666_5192761_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-56	37.9
WP_003875800.1\|5192840_5193026_-	DUF3073 domain-containing protein	NA	NA	NA	NA
WP_011723733.1\|5193172_5194267_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_019732695.1\|5194377_5195247_+	aminodeoxychorismate lyase	NA	NA	NA	NA
WP_019732696.1\|5195518_5196181_-	FABP family protein	NA	NA	NA	NA
WP_003877205.1\|5196326_5196629_-	DUF1416 domain-containing protein	NA	NA	NA	NA
WP_003875806.1\|5196630_5197464_-	sulfurtransferase	NA	NA	NA	NA
WP_019732697.1\|5197500_5197971_-	DUF4395 domain-containing protein	NA	NA	NA	NA
WP_009974936.1\|5198193_5198613_-	thioredoxin family protein	NA	NA	NA	NA
WP_019732698.1\|5198609_5199422_-	DUF2993 domain-containing protein	NA	NA	NA	NA
WP_019732699.1\|5199590_5200373_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.1e-15	32.5
WP_019732700.1\|5200369_5201320_+	mycothiol synthase	NA	NA	NA	NA
WP_009974939.1\|5201482_5202607_+	phosphate ABC transporter substrate-binding protein PstS	A0A2R8FEI2	Cedratvirus	4.5e-07	47.7
WP_003877208.1\|5202658_5203702_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_009974941.1\|5203698_5204613_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_003875815.1\|5204625_5205402_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-16	33.7
WP_003875816.1\|5205474_5206143_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_033720292.1\|5206201_5208319_-	LCP family protein	NA	NA	NA	NA
WP_073578938.1\|5208277_5208493_+	hypothetical protein	NA	NA	NA	NA
WP_019732805.1\|5208526_5209660_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_003875819.1\|5209666_5210689_-	acyl-ACP desaturase	NA	NA	NA	NA
WP_023861897.1\|5210873_5211488_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_019732397.1\|5211556_5212630_+	DUF2236 domain-containing protein	NA	NA	NA	NA
WP_011723747.1\|5212646_5212850_-	hypothetical protein	NA	NA	NA	NA
WP_003877217.1\|5212906_5213308_-	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	4.6e-07	31.9
WP_019732396.1\|5213351_5213885_-	nucleoside deaminase	S4VYZ2	Pandoravirus	5.6e-16	39.3
WP_019732395.1\|5213939_5214836_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_132160402.1\|5215880_5217908_+	hypothetical protein	NA	NA	NA	NA
WP_062887574.1\|5219366_5219705_-	DUF3024 domain-containing protein	NA	NA	NA	NA
WP_009979999.1\|5225913_5226708_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.6e-30	33.9
WP_132160400.1\|5229275_5230346_-	hypothetical protein	NA	NA	NA	NA
WP_057969464.1\|5233205_5234099_+	hypothetical protein	NA	NA	NA	NA
WP_094494180.1\|5234303_5235416_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-67	44.2
WP_007172498.1\|5235484_5236534_+\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	3.8e-08	27.1
WP_138017812.1\|5236430_5238218_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_033717372.1\|5238219_5238474_+	hypothetical protein	NA	NA	NA	NA
WP_007172599.1\|5239091_5240183_-\|integrase	site-specific integrase	A0A0E3XBN7	Gordonia_phage	1.1e-42	33.7
5246838:5246854	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040245

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3023 : 12764

Mycobacterium_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_133438217.1\|3023_3599_-	ParA family protein	W0LIU2	Mycobacterium_phage	4.0e-52	58.2
WP_055577712.1\|3972_4176_+	hypothetical protein	NA	NA	NA	NA
WP_133438216.1\|4407_5655_+	rep protein	A0A286MQ55	Mycobacterium_phage	6.2e-42	40.7
WP_133438215.1\|6028_8830_+	relaxase domain-containing protein	V5UQN3	Mycobacterium_phage	1.3e-103	32.3
WP_137987265.1\|9129_10440_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.9e-227	89.1
WP_055578314.1\|10446_11148_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	5.8e-130	93.1
WP_137987266.1\|11498_12764_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.3e-39	28.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040247

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040245

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection