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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040379 Salmonella enterica subsp. enterica serovar Montevideo strain FCC0123 chromosome, complete genome 4 crisprs PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT 1 16 8 0

Results visualization

1. NZ_CP040379
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040379_1 125316-125410 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040379_2 641843-642094 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040379_3 963445-964816 TypeI-E I-E
22 spacers
cas3,cas8e,cse2gr11,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040379_4 981578-981850 TypeI-E I-E
4 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP040379_2 2.1|641897|59|NZ_CP040379|PILER-CR 641897-641955 59 NZ_CP040379.1 642315-642373 2 0.966

1. spacer 2.1|641897|59|NZ_CP040379|PILER-CR matches to position: 642315-642373, mismatch: 2, identity: 0.966

gaacccggcttatcggtcagtttcacctcttcataaaacccgcttcggcgggtttttgc	CRISPR spacer
gaaagcggcttatcggtcagtttcacctcttcataaaacccgcttcggcgggtttttgc	Protospacer
***  ******************************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040379_3 3.1|963474|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963474-963505 32 KT630649 Salmonella phage SEN34, complete genome 14244-14275 0 1.0
NZ_CP040379_3 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963597-963628 32 NZ_CP039495 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence 42224-42255 0 1.0
NZ_CP040379_3 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963597-963628 32 NC_006949 Enterobacteria phage ES18, complete genome 9177-9208 0 1.0
NZ_CP040379_3 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963597-963628 32 AY736146 Salmonella typhimurium bacteriophage ES18, complete sequence 9177-9208 0 1.0
NZ_CP040379_3 3.6|963780|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963780-963811 32 CP053320 Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence 20666-20697 0 1.0
NZ_CP040379_4 4.1|981607|32|NZ_CP040379|CRISPRCasFinder,CRT 981607-981638 32 KT630649 Salmonella phage SEN34, complete genome 40404-40435 0 1.0
NZ_CP040379_3 3.2|963535|33|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963535-963567 33 NZ_CP042502 Enterobacter sp. E76 plasmid pE76_003, complete sequence 75008-75040 2 0.939
NZ_CP040379_3 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963719-963750 32 AJ298298 Bacteriophage P27 complete genome 672-703 2 0.938
NZ_CP040379_3 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963719-963750 32 NC_003356 Enterobacteria phage phiP27, complete genome 672-703 2 0.938
NZ_CP040379_3 3.1|963474|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963474-963505 32 NZ_CP042502 Enterobacter sp. E76 plasmid pE76_003, complete sequence 72729-72760 3 0.906
NZ_CP040379_3 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963719-963750 32 MN098327 Klebsiella phage Mulock, complete genome 25459-25490 3 0.906
NZ_CP040379_3 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963719-963750 32 KY271400 Klebsiella phage 6 LV-2017, complete genome 17660-17691 4 0.875
NZ_CP040379_3 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT 964756-964787 32 NZ_CP024424 Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence 112052-112083 5 0.844
NZ_CP040379_3 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT 964756-964787 32 NZ_CP020440 Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence 224971-225002 5 0.844
NZ_CP040379_3 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT 964756-964787 32 NZ_CP044082 Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence 90792-90823 5 0.844
NZ_CP040379_3 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963597-963628 32 NZ_CP015231 Epibacterium mobile F1926 plasmid unnamed1, complete sequence 855708-855739 6 0.812
NZ_CP040379_3 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963719-963750 32 DQ231597 Phage 258-320 lysogen T2 Int protein (int) gene, complete cds; and YecE (yecE) gene, partial cds 644-675 6 0.812
NZ_CP040379_3 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963719-963750 32 DQ231596 Phage 258-320 Int protein (int) gene, complete cds; and YecE (yecE) gene, partial cds 644-675 6 0.812
NZ_CP040379_3 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT 964756-964787 32 NZ_CP031080 Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence 271400-271431 6 0.812
NZ_CP040379_3 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963597-963628 32 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1870333-1870364 7 0.781
NZ_CP040379_3 3.4|963658|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963658-963689 32 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 1647831-1647862 7 0.781
NZ_CP040379_3 3.4|963658|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963658-963689 32 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 1987208-1987239 7 0.781
NZ_CP040379_3 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964451-964482 32 NZ_CP012100 Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence 97528-97559 7 0.781
NZ_CP040379_3 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT 964756-964787 32 NC_008826 Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence 343727-343758 7 0.781
NZ_CP040379_3 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT 964756-964787 32 NC_009621 Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence 654402-654433 7 0.781
NZ_CP040379_4 4.1|981607|32|NZ_CP040379|CRISPRCasFinder,CRT 981607-981638 32 KM236246 Bacillus phage Moonbeam, complete genome 125991-126022 7 0.781
NZ_CP040379_3 3.2|963535|33|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963535-963567 33 NZ_CP007515 Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence 58048-58080 8 0.758
NZ_CP040379_3 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963597-963628 32 NZ_CP030828 Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence 638308-638339 8 0.75
NZ_CP040379_3 3.8|963902|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963902-963933 32 NZ_CP028970 Aminobacter sp. MSH1 plasmid pUSP2, complete sequence 56601-56632 8 0.75
NZ_CP040379_3 3.10|964024|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964024-964055 32 NC_008757 Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence 76794-76825 8 0.75
NZ_CP040379_3 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964451-964482 32 NC_018878 Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence 370450-370481 8 0.75
NZ_CP040379_3 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964451-964482 32 NZ_CP041065 Bacillus megaterium strain KNU-01 plasmid pKNU_01_2, complete sequence 24406-24437 8 0.75
NZ_CP040379_3 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964451-964482 32 NZ_CP018875 Bacillus megaterium strain JX285 plasmid unnamed2, complete sequence 4969-5000 8 0.75
NZ_CP040379_3 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT 964756-964787 32 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 2052295-2052326 8 0.75
NZ_CP040379_3 3.4|963658|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963658-963689 32 CP000618 Burkholderia vietnamiensis G4 plasmid pBVIE02, complete sequence 4267-4298 9 0.719
NZ_CP040379_3 3.8|963902|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963902-963933 32 NZ_CP039340 Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence 160861-160892 9 0.719
NZ_CP040379_3 3.8|963902|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963902-963933 32 NZ_CP025613 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence 389815-389846 9 0.719
NZ_CP040379_3 3.11|964085|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964085-964116 32 NZ_CP033609 Weissella hellenica strain 0916-4-2 plasmid pWHSP041, complete sequence 14587-14618 9 0.719
NZ_CP040379_3 3.11|964085|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964085-964116 32 NZ_CP042400 Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence 11176-11207 9 0.719
NZ_CP040379_3 3.14|964268|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964268-964299 32 NZ_CP015507 Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence 101710-101741 9 0.719
NZ_CP040379_3 3.15|964329|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964329-964360 32 NZ_CP041605 Streptomyces sp. S1D4-14 plasmid pS1D4-14.1, complete sequence 25291-25322 9 0.719
NZ_CP040379_3 3.16|964390|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964390-964421 32 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 19764-19795 9 0.719
NZ_CP040379_3 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964451-964482 32 NC_010180 Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence 63662-63693 10 0.688
NZ_CP040379_3 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964451-964482 32 NZ_CP031072 Bacillus mycoides strain BPN401 plasmid pl395, complete sequence 331550-331581 10 0.688
NZ_CP040379_3 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 964451-964482 32 CP037991 Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence 58062-58093 10 0.688
NZ_CP040379_3 3.9|963963|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT 963963-963994 32 NZ_CP016452 Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence 1185420-1185451 11 0.656

1. spacer 3.1|963474|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 0, identity: 1.0

gaatgccggagattaccggctcccccctgtcg	CRISPR spacer
gaatgccggagattaccggctcccccctgtcg	Protospacer
********************************

2. spacer 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039495 (Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence) position: , mismatch: 0, identity: 1.0

ttgaagaccgcgctgatgcaatccgccaggcg	CRISPR spacer
ttgaagaccgcgctgatgcaatccgccaggcg	Protospacer
********************************

3. spacer 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NC_006949 (Enterobacteria phage ES18, complete genome) position: , mismatch: 0, identity: 1.0

ttgaagaccgcgctgatgcaatccgccaggcg	CRISPR spacer
ttgaagaccgcgctgatgcaatccgccaggcg	Protospacer
********************************

4. spacer 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to AY736146 (Salmonella typhimurium bacteriophage ES18, complete sequence) position: , mismatch: 0, identity: 1.0

ttgaagaccgcgctgatgcaatccgccaggcg	CRISPR spacer
ttgaagaccgcgctgatgcaatccgccaggcg	Protospacer
********************************

5. spacer 3.6|963780|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gacaagctggaacgtgatcggcttactgatga	CRISPR spacer
gacaagctggaacgtgatcggcttactgatga	Protospacer
********************************

6. spacer 4.1|981607|32|NZ_CP040379|CRISPRCasFinder,CRT matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 0, identity: 1.0

gcagcattatatcctgtcaatactgggttatt	CRISPR spacer
gcagcattatatcctgtcaatactgggttatt	Protospacer
********************************

7. spacer 3.2|963535|33|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042502 (Enterobacter sp. E76 plasmid pE76_003, complete sequence) position: , mismatch: 2, identity: 0.939

attcgagccgattttgtcacgggccatgcctgc	CRISPR spacer
attagagccgattttgtcacgggtcatgcctgc	Protospacer
*** *******************.*********

8. spacer 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to AJ298298 (Bacteriophage P27 complete genome) position: , mismatch: 2, identity: 0.938

tgaccacaggtttttcgtctgctgatgtcggc	CRISPR spacer
tgaccacaggttttttgtctgctgatgccggc	Protospacer
***************.***********.****

9. spacer 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NC_003356 (Enterobacteria phage phiP27, complete genome) position: , mismatch: 2, identity: 0.938

tgaccacaggtttttcgtctgctgatgtcggc	CRISPR spacer
tgaccacaggttttttgtctgctgatgccggc	Protospacer
***************.***********.****

10. spacer 3.1|963474|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042502 (Enterobacter sp. E76 plasmid pE76_003, complete sequence) position: , mismatch: 3, identity: 0.906

gaatgccggagattaccggctcccccctgtcg	CRISPR spacer
gaataccagagattaccggctcccccctgtca	Protospacer
****.**.***********************.

11. spacer 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to MN098327 (Klebsiella phage Mulock, complete genome) position: , mismatch: 3, identity: 0.906

tgaccacaggtttttcgtctgctgatgtcggc	CRISPR spacer
tgaccacaggtttttcgtttgctgatgtttgc	Protospacer
******************.*********. **

12. spacer 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to KY271400 (Klebsiella phage 6 LV-2017, complete genome) position: , mismatch: 4, identity: 0.875

tgaccacaggtttttcgtctgctgatgtcggc	CRISPR spacer
tgaccacaggtttttcgtttgctgatgcttgc	Protospacer
******************.********.. **

13. spacer 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****. 

14. spacer 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****. 

15. spacer 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****. 

16. spacer 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

ttgaagaccgcgctgatgcaatccgccaggcg---	CRISPR spacer
tggaagaccgcgctgctgcaattcg---ggcgcaa	Protospacer
* ************* ******.**   ****   

17. spacer 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to DQ231597 (Phage 258-320 lysogen T2 Int protein (int) gene, complete cds; and YecE (yecE) gene, partial cds) position: , mismatch: 6, identity: 0.812

tgaccacaggtttttcgtctgctgatgtcggc	CRISPR spacer
ggaccacaggtttttcgtttgttgatggtgac	Protospacer
 *****************.**.***** .*.*

18. spacer 3.5|963719|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to DQ231596 (Phage 258-320 Int protein (int) gene, complete cds; and YecE (yecE) gene, partial cds) position: , mismatch: 6, identity: 0.812

tgaccacaggtttttcgtctgctgatgtcggc	CRISPR spacer
ggaccacaggtttttcgtttgttgatggtgac	Protospacer
 *****************.**.***** .*.*

19. spacer 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****. 

20. spacer 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

ttgaagaccgcgctgatgcaatccgccaggcg	CRISPR spacer
gtcaagaccacgctgatggaatccgccctggg	Protospacer
 * ******.******** ********  * *

21. spacer 3.4|963658|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 7, identity: 0.781

tcggcattgatcttgttcagttcagccggtga-	CRISPR spacer
tcggcgtagatcttgttcagttca-tgagcgat	Protospacer
*****.* **************** . .*.** 

22. spacer 3.4|963658|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 7, identity: 0.781

tcggcattgatcttgttcagttcagccggtga-	CRISPR spacer
tcggcgtagatcttgttcagttca-tgagcgat	Protospacer
*****.* **************** . .*.** 

23. spacer 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaaatataaagtatgttttgtttaattctaaa	CRISPR spacer
aaaatataaagtatgtagtgtttgaaacaaat	Protospacer
****************  *****.*  * ** 

24. spacer 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  ** 

25. spacer 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **. 

26. spacer 4.1|981607|32|NZ_CP040379|CRISPRCasFinder,CRT matches to KM236246 (Bacillus phage Moonbeam, complete genome) position: , mismatch: 7, identity: 0.781

gcagcattatatcctgtcaatactgggttatt	CRISPR spacer
acagctttatatcctgtccatacttttttagt	Protospacer
.**** ************ *****   *** *

27. spacer 3.2|963535|33|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007515 (Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

attcgagccgattttgtcacgggccatgcctgc	CRISPR spacer
attcgagcggattttgtctcgggcaagcggcgc	Protospacer
******** ********* ***** *    .**

28. spacer 3.3|963597|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 8, identity: 0.75

ttgaagaccgcgctgatgcaatccgccaggcg	CRISPR spacer
cggcagaccgcgccgatgcaatctgccaaagg	Protospacer
. * *********.*********.****.. *

29. spacer 3.8|963902|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 8, identity: 0.75

--gcgacctgctcgacagcattcagtttgttgtt	CRISPR spacer
tgccggc--actcgtcagcattcggtttgttgtc	Protospacer
   **.*  .**** ********.*********.

30. spacer 3.10|964024|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NC_008757 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence) position: , mismatch: 8, identity: 0.75

tgctgtttgcagaccacacaggcgacaaattc	CRISPR spacer
ggcgctttgcaggccacacaggcgaccaacca	Protospacer
 **  *******.************* **.. 

31. spacer 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatataaagtatgttttgtttaattctaaa	CRISPR spacer
tagataaaaagtatattttgtttaataaaaag	Protospacer
 *.*** *******.***********   **.

32. spacer 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041065 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_2, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatataaagtatgttttgtttaattctaaa	CRISPR spacer
ccaatcctaaggatgttttgtttaattataag	Protospacer
  *** . *** *************** ***.

33. spacer 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018875 (Bacillus megaterium strain JX285 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatataaagtatgttttgtttaattctaaa	CRISPR spacer
ccaatcctaaggatgttttgtttaattataag	Protospacer
  *** . *** *************** ***.

34. spacer 3.22|964756|32|NZ_CP040379|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***  

35. spacer 3.4|963658|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to CP000618 (Burkholderia vietnamiensis G4 plasmid pBVIE02, complete sequence) position: , mismatch: 9, identity: 0.719

tcggcattgatcttgttcagttcagccggtga	CRISPR spacer
tcggcatagatcttgttcagctcgtgcgcgat	Protospacer
******* ************.**.  **  . 

36. spacer 3.8|963902|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.719

gcgacctgctcgacagcattcagtttgttgtt	CRISPR spacer
ccgaactgctcgacagcattccgttcttacgg	Protospacer
 *** **************** ***. *    

37. spacer 3.8|963902|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgacctgctcgacagcattcagtttgttgtt	CRISPR spacer
aggggctgggcgacagcattcagtttgttcgc	Protospacer
. *. ***  *******************  .

38. spacer 3.11|964085|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033609 (Weissella hellenica strain 0916-4-2 plasmid pWHSP041, complete sequence) position: , mismatch: 9, identity: 0.719

---agggtgaacgaagtcactcttaaatttctgaa	CRISPR spacer
cctaatgc---tgaagacactcttaaaattctgaa	Protospacer
   *. *.   .**** ********** *******

39. spacer 3.11|964085|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042400 (Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

---agggtgaacgaagtcactcttaaatttctgaa	CRISPR spacer
cctaatgc---tgaagacactcttaaaattctgaa	Protospacer
   *. *.   .**** ********** *******

40. spacer 3.14|964268|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagtatcagtataaataaccacgtattcacc	CRISPR spacer
tcacctgttgtataaataatcacgttttcacc	Protospacer
*.* .  . **********.***** ******

41. spacer 3.15|964329|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041605 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.1, complete sequence) position: , mismatch: 9, identity: 0.719

tatgagccgatctggaacgtgagcgctgaaac	CRISPR spacer
cttgagtcgatctggaacgtgaacgccgctgg	Protospacer
. ****.***************.***.*  . 

42. spacer 3.16|964390|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

agttcggcaggttttagttccgtcgcgtttgc	CRISPR spacer
ttatcggcaggttccagttccgtcgcttggcc	Protospacer
   **********..*********** *   *

43. spacer 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatataaagtatgttttgtttaattctaaa	CRISPR spacer
gaattattaagtatgttttgtttataattgtc	Protospacer
.** *** ****************   .*.  

44. spacer 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatataaagtatgttttgtttaattctaaa	CRISPR spacer
gaattattaagtatgttttgtttataattgtc	Protospacer
.** *** ****************   .*.  

45. spacer 3.17|964451|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatataaagtatgttttgtttaattctaaa	CRISPR spacer
gaattattaagtatgttttgtttataattgtc	Protospacer
.** *** ****************   .*.  

46. spacer 3.9|963963|32|NZ_CP040379|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 11, identity: 0.656

gcagccgtgcgcaagcgtggcctgacgatgag	CRISPR spacer
ctggccgtgcgcaagggtgccctgaccgccct	Protospacer
 ..************ *** ****** ..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 63156 : 94191 45 Escherichia_phage(60.47%) head,tail,transposase,protease,plate NA
DBSCAN-SWA_2 1149983 : 1214614 65 Salmonella_phage(88.89%) head,tail,integrase,lysis,terminase,tRNA,portal,capsid,plate attL 1151428:1151474|attR 1185627:1185673
DBSCAN-SWA_3 1704601 : 1713772 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_4 1870946 : 1878213 8 Morganella_phage(33.33%) NA NA
DBSCAN-SWA_5 2164437 : 2171338 10 Salmonella_phage(28.57%) NA NA
DBSCAN-SWA_6 2622208 : 2636490 17 Escherichia_phage(50.0%) tail NA
DBSCAN-SWA_7 3016667 : 3056283 57 Salmonella_phage(62.5%) coat,integrase,lysis,terminase,protease,portal,holin attL 3016316:3016337|attR 3056349:3056370
DBSCAN-SWA_8 3525757 : 3586627 54 Saccharomonospora_phage(22.22%) protease,plate,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage