CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP040367	Bacillus flexus isolate 1-2-1 chromosome, complete genome	2 crisprs	DEDDh,cas3,RT,csa3,WYL,DinG	4
NZ_CP040365	Bacillus flexus isolate 1-2-1 plasmid punnamed2, complete sequence	0 crisprs	csa3	0
NZ_CP040364	Bacillus flexus isolate 1-2-1 plasmid punnamed1, complete sequence	0 crisprs	NA	0
NZ_CP040366	Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040367_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040367_1

3352453-3352661

Orphan

Consensus_repeat	Method
TGTAAATGAGGTGTTTGTCAAAGA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP040367_1

>merge|NZ_CP040367|1|3352453-3352661|CRISPRCasFinder
TGTAAATGAGGTGTTTGTCAAAGACCACGAACGACTTCGTTCAATTTATTTATCCATTCTACAAATTGCTTAAATGAGGTGTTTGTCAAAGAGAAGAAACGTTTTATTCTACGTTAATGCTTGTCATTAAAATGTCGAATGAGGTGTTTGTCGAAGACAATTTACATGAATTAGGCACATTATTACGTAAATGAGGTGTTCCTTAAACG

>NZ_CP040367|1|1|3352453-3352661|CRISPRCasFinder
TGTAAATGAGGTGTTTGTCAAAGA	CCACGAACGACTTCGTTCAATTTATTTATCCATTCTACAAATTG
CTTAAATGAGGTGTTTGTCAAAGA	GAAGAAACGTTTTATTCTACGTTAATGCTTGTCATTAAAAT
GTCGAATGAGGTGTTTGTCGAAGA	CAATTTACATGAATTAGGCACATTATTA
CGTAAATGAGGTGTTCCTTAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040367.1\|WP_061786420.1\|3354229_3355324_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NZ_CP040367.1\|WP_025907781.1\|3353557_3354010_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP040367.1\|WP_025907623.1\|3342819_3344955_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_CP040367.1\|WP_138117378.1\|3350126_3351335_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377581
NZ_CP040367.1\|WP_025907776.1\|3348080_3349283_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP040367.1\|WP_076513325.1\|3358243_3358336_-\|YjcZ-family-sporulation-protein	unknown	unknown	gnl\|CDD\|312989
NZ_CP040367.1\|WP_076513324.1\|3358113_3358203_-\|YjcZ-family-sporulation-protein	unknown	unknown	unknown
NZ_CP040367.1\|WP_076513310.1\|3345151_3345658_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NZ_CP040367.1\|WP_076513320.1\|3355440_3355965_+\|tryptophan-transporter	unknown	unknown	gnl\|CDD\|293704
NZ_CP040367.1\|WP_061786592.1\|3347223_3347889_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP040367.1\|WP_025907779.1\|3351327_3352068_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040367.1\|WP_062686528.1\|3356131_3356506_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227313
NZ_CP040367.1\|WP_025907780.1\|3352818_3353250_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP040367.1\|WP_025907625.1\|3340540_3341488_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|183526
NZ_CP040367.1\|WP_025907787.1\|3357895_3358075_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040367.1\|WP_025907786.1\|3357239_3357584_-\|DUF1878-family-protein	unknown	unknown	gnl\|CDD\|370213
NZ_CP040367.1\|WP_025907785.1\|3356636_3357236_+\|HTH-type-transcriptional-regulator-Hpr	unknown	unknown	gnl\|CDD\|237501
NZ_CP040367.1\|WP_076513312.1\|3345744_3347136_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040367.1\|WP_076513307.1\|3341583_3342627_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP040367.1\|WP_119544142.1\|3349390_3350113_+\|EcsC-family-protein	unknown	unknown	gnl\|CDD\|378945

Protein	Function_ID	Function_description	E-value
NZ_CP040367.1\|WP_061786420.1\|3354229_3355324_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NZ_CP040367.1\|WP_025907623.1\|3342819_3344955_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP040367.1\|WP_138117378.1\|3350126_3351335_-\|ABC-transporter-permease	gnl\|CDD\|377581	pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters.	5.98387e-112
NZ_CP040367.1\|WP_025907776.1\|3348080_3349283_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
NZ_CP040367.1\|WP_076513325.1\|3358243_3358336_-\|YjcZ-family-sporulation-protein	gnl\|CDD\|312989	pfam09680, Tiny_TM_bacill, Protein of unknown function (Tiny_TM_bacill). This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.	0.00314257
NZ_CP040367.1\|WP_076513310.1\|3345151_3345658_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	1.95574e-18
NZ_CP040367.1\|WP_076513320.1\|3355440_3355965_+\|tryptophan-transporter	gnl\|CDD\|293704	pfam17099, TrpP, Tryptophan transporter TrpP. TrpP is a bacterial transmembrane protein that is probably involved in tryptophan uptake. Its expression is regulated by tryptophan-activated RNA-binding regulatory protein (TRAP).	2.65505e-40
NZ_CP040367.1\|WP_025907780.1\|3352818_3353250_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	3.69974e-56
NZ_CP040367.1\|WP_061786592.1\|3347223_3347889_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.16536e-32
NZ_CP040367.1\|WP_025907779.1\|3351327_3352068_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.563e-80
NZ_CP040367.1\|WP_062686528.1\|3356131_3356506_+\|hypothetical-protein	gnl\|CDD\|227313	COG4980, GvpP, Gas vesicle protein [General function prediction only].	9.56839e-12
NZ_CP040367.1\|WP_025907781.1\|3353557_3354010_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	9.9082e-57
NZ_CP040367.1\|WP_025907625.1\|3340540_3341488_-\|ferrochelatase	gnl\|CDD\|183526	PRK12435, PRK12435, ferrochelatase; Provisional.	0
NZ_CP040367.1\|WP_025907786.1\|3357239_3357584_-\|DUF1878-family-protein	gnl\|CDD\|370213	pfam08963, DUF1878, Protein of unknown function (DUF1878). This domain is found in a set of hypothetical bacterial proteins.	1.06405e-29
NZ_CP040367.1\|WP_025907785.1\|3356636_3357236_+\|HTH-type-transcriptional-regulator-Hpr	gnl\|CDD\|237501	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr.	4.06367e-121
NZ_CP040367.1\|WP_076513307.1\|3341583_3342627_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP040367.1\|WP_119544142.1\|3349390_3350113_+\|EcsC-family-protein	gnl\|CDD\|378945	pfam12787, EcsC, EcsC protein family. Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.	6.75058e-88

>NZ_CP040367.1|WP_025907779.1|3351327_3352068_-|ABC-transporter-ATP-binding-protein
MSLLQIQHLTGGYTKTPVLKDVSFEVNAGELVGLIGLNGAGKSTTIKHIIGLMEPKKGSIAIHNKTFQQDSTGYRTQFTFIPETPILYDELTLKEHLDMTAMAYGLDSKTYEARLKPLLKEFRMDKKLKWFPAHFSKGMKQKVMIMCAFLVQPSLYIIDEPFLGLDPLGIQSLLDLMTDMKKQGAGILMSTHILATAERYCDKFVILHNGQVRAQGTLADLRAQFNKPNATLDEIYIELTKEEDYE
>NZ_CP040367.1|WP_138117378.1|3350126_3351335_-|ABC-transporter-permease
MSSIEGLWQQRFQQHLKDTRRYMKYIFNDHLKLVLVFAIGAAAYYYQQWLDTLTPAFPSAFLIAVIMSLILTSGSIRTFLKRPDLVFMLALESKLQLYFKKSFFYTFSTYIYVLLILTAAVAPLHVKVTDQTYSTIFTHLILLLILKAINLKMTWWSVYFEEKYARWIDYLVRFLLNGVFVYFLFVGSYAFFPAVTGAIIIGLALYYRSLVKAKPLKWETLIELEERRVAMFYRLANLFTDVPQLKEQVKRRAYLDTILKSIPFQQQATHRYLYTRTFLRAGDYLGLLVRLTVISGLILIATPFAYGNIVIVLLTLYITGFQIMPLWKHHKQVLWLSLYPLQEQTRRAAFLSIIRNVLFLQAACLSIVVAASNLLVGLLAFVAGGLFVQFFVTAYIKKKAIA
>NZ_CP040367.1|WP_119544142.1|3349390_3350113_+|EcsC-family-protein
MTEYEQRALADAEHWKITLLKRPSAFQRNAKQLQNKLNKKVPESIHKIITESIKKMVETTIIGSTITTKKDYNRHLSFEEREAEIKATISKYRKTAAVEGAGTGAGGLLLGAADFPLFLSIKMKCLFDIATIYGFDVRKQDERLFILYIFHLAFCSEEKRTEVFALIQEWNQSSQHNLDWKSFQQEYRDYIDVIKMLQLMPGFGAFVGAFANYHLLDHVTQVAMNVYRLRLLSSNEKNLP
>NZ_CP040367.1|WP_025907776.1|3348080_3349283_+|amidohydrolase
MISELHSLLEKSYDEMVQIRRYLHQYPEPSFKEFQTATYIRSFYDKIGVPYRANVGGNGIVATIKGEKPGPTVALRADFDALAIQDEKDVPYKSTVPGVMHACGHDGHTATLLVLAKSIQQLKDHLEGTIVFIHQHAEEYAPGGAKPMIEDGCLDGVDAIFGTHLWAVTPTGVIQHRNGPFMAAADRFEITIKGAGGHGAQPHKTKDAIVIASQLVVNLQQIISRRVNPVESAVITVGSFVAENAFNVIADSAKLVGTVRTFSEDVRNDMEREIERIIQGTCLAADASYDYSFKRGYPAVVNHSEENAFLAKVAETIPEVEKVEETEPQMGGEDFAYYLQHIKGTFFFTGAQPEGVDTPYPHHHPKFDFNEKAMLIASKTLGTAAIEYLSKEQKAESITS
>NZ_CP040367.1|WP_061786592.1|3347223_3347889_-|phosphatase-PAP2-family-protein
MRKWRMKYRFILLLLLALMGMFIGVVMTINGPVHGIDAFFLTIATNIHNHELVIRILEVTSFFASKPMIIILSLLLVGVLGFNKRDTVGAVTVLAFVLSGYLLNNAVKAWIERLRPTLGVEGYSFPSGHAMLGLMLYGFLLFFIIFYVKNETVRKASIIVFSLLILFIGVSRFLLAEHYMTDVLGGYLLGGFWLTVGLLFYTLVKAYLTPTAPMNSKQYMG
>NZ_CP040367.1|WP_076513312.1|3345744_3347136_+|hypothetical-protein
MGMDLVSLHWIYISFILLILGFMIIRRDTTIICIIGIFLLSFTATSSLTGSISGVFSSFIYAITELLPTILIISIIVSMSKALITTGVNDMMISPFARFIKTPTLAYWVIGLVMMIISFFFWPSPAIALLGAVLLPVALRAGLPALGVAMAMNLFGHGIALSGDFVIQAAPKLTADAAGLPVSDVIQASVPLVITMGVVTTVTAFIFLKRDLKNGTLPVQASPLIEAAENTEKVQMPLVLKRILALLIPILFALNVWAMFTFNLQGGDATALIGGTSLFILMIISIIGHQNKGLEKTTSYLIEGFQFGFKVFGPVIPIAAFFYLGDAGFTSIIGDFLPKGSHGIVNDLGVAISSVVPLNEQIAAVTVMTIGAITGLDGSGFSGISLVGSISQLFATAIGSGTATLTALGQVAGIWVGGGTLIPWALIPAAAICGVSPFELARRNLKPVAIGLVVTTVVAMFLI
>NZ_CP040367.1|WP_076513310.1|3345151_3345658_+|antibiotic-biosynthesis-monooxygenase
MNFFITYGTVEFLQHLKEQHPEEKLYLLHKEGDQGCLLHETTGETIFKEGHNYEALDYVGSIADGKYVVMNNIAVTDEGRPLFESRFNQRARLIEKEPGFAAIRVLRPLSNDTYIILTAWEEEKAFTDWQASQAYNQAHKKRGTSEGVDKQPAIFLRPSYVTSYHVMH
>NZ_CP040367.1|WP_025907623.1|3342819_3344955_-|PBP1A-family-penicillin-binding-protein
MYKRALYIFSIVAGILLFALIGYIMILFFGSYVIDEKKFVMNSATKLVDQNGDEITKLYVENRDPVSIEEVPKHVQNAFVAVEDVRFYEHHGIDVKAIGRALYKDILAGSKVEGGSTLTQQLAKNIFLTNDKSWLRKTKEVMVAINLEQRYSKQKILEMYLNQIYFGHGAYGIQAASQLYFNKDVSELTVEEGALLAALPKGPNSYSPILHPEKSIERRNVVLNSMQKADFLSAEEVVRLQGRTLSLDVQQKTKNPAYLTYIDMVIEEAAEKHHISSDDLLRGGYTVTVPMNRDYQETAYELFQQAAYFPGVDEQAQGAFVLMNHRTGGVLSVMGGRDYVQKGLNRVKVKRQPGSTMKPLAVYGPALQESLYKPYSLLSDKKQNFGQYKPQNINGQYAGKVTMYDAIKDSKNIPAVWTLNKLGISTAKAYLTKLDIETEDKGLSIALGGLTEGVTPLQLASAYSTFAQDGEKKEPYFISEIKDQNGDVIAKAEQGTTNVFSNQNAWYMTKMLEAVVKDGTASVGKYEGALAGKTGSTSYAGVKGATRDAWFVGYTPSVVGAVWMGYDRTDNQHYLTKGSSYPSQLFKDILTEAKQETGKVFKKPKGVKDLPDPIRLPIINSLQQELTFQPFGLLTVNLTWEPSEDKRVVYYVYEKQGSERNVIGKVKGKGSYEVERINLFKSPTYYIVPYNSQTKEEGMPSNEVTPTLFSD
>NZ_CP040367.1|WP_076513307.1|3341583_3342627_-|uroporphyrinogen-decarboxylase
MSQQLMNDTFLKACRGEKTDHVPVWYMRQAGRSQPEYRALKEKYSLFEITHQPELGAYVTRLPVEQYGVDAAILYKDIMTPLPAIGVDVEIKTGIGPVISNPIRSMQDVENLGYITPEEDVAYVLDTIKLLTTEQLNVPLIGFAGAPFTVASYMIEGGPSKNYNKTKAFMYTEPKAWFALMDKLADMTITYVKAQIDAGARAIQIFDSWVGALNVADYRYFIKPVMNRIFTELKEKNVPLIMFGVGASHLAKEWHDLPLDVVGLDWRMQVQEARELGLTKTLQGNLDPAILLAPWEVIEERAKTILDQGMQQDGYIFNLGHGVFPQVNPETLKRLTAFIHEYSTNRQ
>NZ_CP040367.1|WP_025907625.1|3340540_3341488_-|ferrochelatase
MSKKVMGLLVMAYGTPYKEEDIERYYTHIRRGRKPSAEALEDLKQRYEAIGGISPLAKITEEQMRCLEQHLNEIQDEIEFKAYLGLKHIEPFVEEAVEQMHKDGIKEAVSIVLAPHFSTFSVKSYNGRAKETAEKLGGLVIHSIESWYKEPKFINYWVEKVKQTFDLMSDDEKQKAVLIVSAHSLPEKIIAAGDPYPKQLQETADLIAEGAGVSNYEVGWQSEGNTPDPWIGPDVQDLTRDLYEHKGYRSFVYTPVGFIADHLEVLYDNDYECKVVTDELGANYYRPEMPNAKPEFIDALATVVLKKLNNESENQ
>NZ_CP040367.1|WP_025907780.1|3352818_3353250_+|HIT-family-protein
MSNLDENCIFCKIIRGEIPCAKVFENEHVLAFLDISQVTKGHTLVIPKVHKKDIHELTPEIARHLFEVVPQIATAIKETYEPVGINILNNNGEKAGQSVFHYHMHIIPRYGEGDGFGAVWKEHTSDYTPEKLQSIAAEISERL
>NZ_CP040367.1|WP_025907781.1|3353557_3354010_-|GNAT-family-N-acetyltransferase
MTWHIKTFDQLTTHELYDILQERTRVFVVEQECAYLEVDGKDQASYHLFKVENAQIIAYIRLMPKGVSYQEASFGRVLVHSDYRKTGMGRELVQKGLAFLKDQMGEEVVKIQAQSHLQHFYESFGFYAISNVYDDDGIPHVDMIKEEIET
>NZ_CP040367.1|WP_061786420.1|3354229_3355324_+|3-phosphoserine/phosphohydroxythreonine-transaminase
MISVKRAYNFNAGPSALPLPVLQLAQQELTDFKGTGMSVMELSHRSKEFENVLNHAKETLTELLSIPDTHEILFLQGGASLQFSMIPMNFLGKDQVGAFVLTGAWSEKALKEAKKVGETTVVASTKEENYRSIPTLDRAALPSNTAYLHITSNNTIFGTQWAEYPKFENIDLIADMSSDILCRPIDVSKFSLIYAGAQKNLGPSGVTVVIIKKDLLKRIPANLPTMLDYNTHIKSNSLYNTPPTFGIYMLSLVLDWIKEQGGVTVVAENNKKKAELIYSSIDKSNGFYTPHATNDSRSLMNVTFTLPNEELTAAFLAQSKEQGFVGLAGHRSVGGCRASIYNAVPLEACQALAAFMDEFASVHA
>NZ_CP040367.1|WP_076513320.1|3355440_3355965_+|tryptophan-transporter
MNTKTLVSLSLLVGIGAVLHAIMPPVLFGMKPDMMLTMMFLGILLFPGVKNVLLLGLTTGAISALTTGFPGGQVPNIIDKPITAFIIFGLLLLVRNVTTVKTPVAAALTAVGTLVSGIIFLSAAALIVGLPGGLMALIVGVVLPATVVNTIVMVVVYPIVNSVLKRTSISAKVS
>NZ_CP040367.1|WP_062686528.1|3356131_3356506_+|hypothetical-protein
MKRTTSLFTGIAAGSIAAAAATLLLTPTSGKTLRQRIAQESHQVKETKEDISGKIKHLKTQIQTTAKDGNTIVKNIAKDLSKTLNEFQKDIRPHQQSIQSHLNEIEDSLSHLEKHIQTTKTEGK
>NZ_CP040367.1|WP_025907785.1|3356636_3357236_+|HTH-type-transcriptional-regulator-Hpr
MKKTSDQVYDLKEALLFSQRIAQLSKALWKTVEKDWQQWIKPYDLNINEHHILWISYHLNGASISEIAKFGVMHVSTAFNFSKKLEERGLLEFSKKETDKRNTYIQLTQKGEDILLALMENYKPSENSVFNGALPLRNLYGKFPEFMELMTVIRKIYGEDFMDIFERSFHHIEEEFVDNDGKLEKREKIVTDQKESISN
>NZ_CP040367.1|WP_025907786.1|3357239_3357584_-|DUF1878-family-protein
METLESRVSRLEYYIKLLAGTPEQEAKPFIELVVKEELTRREVEDVLLLCEEIKEVYIEQKAEGLTDFVPLLTQFVGMLNYKLDPQETIESLLNQSSYQDVMTELFNIVQWIRD
>NZ_CP040367.1|WP_025907787.1|3357895_3358075_+|hypothetical-protein
MYIFFIPFALFILFYINTLTNTLCLQKEIPEEKQPKVFRTINILITILLISSYVEVLFT
>NZ_CP040367.1|WP_076513324.1|3358113_3358203_-|YjcZ-family-sporulation-protein
MGKHGYGNGFSLIVVLFILLVIIGYGLAY
>NZ_CP040367.1|WP_076513325.1|3358243_3358336_-|YjcZ-family-sporulation-protein
MSHGYGYGNGFALLVVLFILLVIIGCACYY

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Crispr_ID: NZ_CP040367_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040367_2

3465994-3466100

Orphan

Consensus_repeat	Method
CAGCTTGTGCGTTTTGTTGCTTCACTTGTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040367_2

>merge|NZ_CP040367|2|3465994-3466100|CRISPRCasFinder
CAGCTTGTGCGTTTTGTTGCTTCACTTGTTGCACATCTGTTTCGCTAGCAAATTCTGCACCGTATTGGTTGTTTGCAGCTTGTGCGTTTTGTTGCTTTACTTGTTGC

>NZ_CP040367|2|2|3465994-3466100|CRISPRCasFinder
CAGCTTGTGCGTTTTGTTGCTTCACTTGTTGC	ACATCTGTTTCGCTAGCAAATTCTGCACCGTATTGGTTGTTTG
CAGCTTGTGCGTTTTGTTGCTTTACTTGTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040367.1\|WP_061786517.1\|3471341_3472151_-\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|237619
NZ_CP040367.1\|WP_025909534.1\|3468601_3469582_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP040367.1\|WP_138116520.1\|3460959_3462537_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_CP040367.1\|WP_061786176.1\|3457095_3458109_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226952
NZ_CP040367.1\|WP_138117392.1\|3455028_3455430_-\|two-pore-domain-potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NZ_CP040367.1\|WP_025909539.1\|3464612_3465146_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP040367.1\|WP_025909541.1\|3459769_3460858_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP040367.1\|WP_138117394.1\|3473614_3473866_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040367.1\|WP_076512914.1\|3467367_3468462_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP040367.1\|WP_025909538.1\|3465450_3465711_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP040367.1\|WP_061786171.1\|3467099_3467324_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040367.1\|WP_138117393.1\|3470650_3471310_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187643
NZ_CP040367.1\|WP_025909544.1\|3456311_3457103_-\|daunorubicin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226953
NZ_CP040367.1\|WP_025909545.1\|3455522_3456308_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226218
NZ_CP040367.1\|WP_025909537.1\|3466201_3466951_-\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145
NZ_CP040367.1\|WP_025909533.1\|3469639_3469909_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379438
NZ_CP040367.1\|WP_061786174.1\|3462695_3464444_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP040367.1\|WP_061786175.1\|3458256_3459555_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493
NZ_CP040367.1\|WP_025909532.1\|3470045_3470204_+\|small,-acid-soluble-spore-protein-K	unknown	unknown	gnl\|CDD\|285399
NZ_CP040367.1\|WP_025909531.1\|3470248_3470569_-\|YfhH-family-protein	unknown	unknown	gnl\|CDD\|378063

Protein	Function_ID	Function_description	E-value
NZ_CP040367.1\|WP_061786517.1\|3471341_3472151_-\|recombination-regulator-RecX	gnl\|CDD\|237619	PRK14135, recX, recombination regulator RecX; Provisional.	6.83717e-109
NZ_CP040367.1\|WP_025909534.1\|3468601_3469582_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	3.29111e-36
NZ_CP040367.1\|WP_138116520.1\|3460959_3462537_-\|IS1182-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.76155e-36
NZ_CP040367.1\|WP_061786176.1\|3457095_3458109_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226952	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	1.2808e-122
NZ_CP040367.1\|WP_138117392.1\|3455028_3455430_-\|two-pore-domain-potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	0.00019294
NZ_CP040367.1\|WP_025909539.1\|3464612_3465146_-\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	4.22971e-126
NZ_CP040367.1\|WP_025909541.1\|3459769_3460858_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.09642e-66
NZ_CP040367.1\|WP_076512914.1\|3467367_3468462_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	5.92605e-149
NZ_CP040367.1\|WP_025909538.1\|3465450_3465711_-\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	1.7119e-17
NZ_CP040367.1\|WP_138117393.1\|3470650_3471310_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187643	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR. These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.92478e-57
NZ_CP040367.1\|WP_025909544.1\|3456311_3457103_-\|daunorubicin-ABC-transporter-permease	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.37189e-29
NZ_CP040367.1\|WP_025909545.1\|3455522_3456308_-\|ABC-transporter-permease	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	2.15372e-48
NZ_CP040367.1\|WP_025909537.1\|3466201_3466951_-\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	4.62746e-168
NZ_CP040367.1\|WP_025909533.1\|3469639_3469909_-\|hypothetical-protein	gnl\|CDD\|379438	pfam14043, WVELL, WVELL protein. This family includes the B. subtilis YfjH protein, which is functionally uncharacterized. This is not a homolog of E. coli YfjH, a synonym for IscX, which belongs to pfam04384. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length and contain a highly conserved WVELL motif.	7.99796e-42
NZ_CP040367.1\|WP_061786174.1\|3462695_3464444_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP040367.1\|WP_061786175.1\|3458256_3459555_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
NZ_CP040367.1\|WP_025909532.1\|3470045_3470204_+\|small,-acid-soluble-spore-protein-K	gnl\|CDD\|285399	pfam08176, SspK, Small acid-soluble spore protein K family. This family consists of the small acid-soluble spore proteins (SASP) belonging to the K type (sspK). The sspK are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspK gene is monocistronic and transcription is primarily by the RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspK results in loss of SspK from the spore but had no discernible effect on sporulation, spore properties or spore germination.	1.20665e-15
NZ_CP040367.1\|WP_025909531.1\|3470248_3470569_-\|YfhH-family-protein	gnl\|CDD\|378063	pfam08838, DUF1811, Protein of unknown function (DUF1811). This is a bacterial family of uncharacterized proteins. Some of the proteins are annotated as being transcriptional regulators. The structure of one of the proteins in this family has revealed a beta-barrel like structure with helix-turn-helix like motif.	1.40097e-57

>NZ_CP040367.1|WP_025909538.1|3465450_3465711_-|hypothetical-protein
MEQFTKLVSQQLETMDQLLFLQSEIERCQQIEEELIKLQAEAKLDCIRGEISVMKQRLKEIQQTFEVQTEEIISSYKKDSHYPVSR
>NZ_CP040367.1|WP_025909539.1|3464612_3465146_-|DUF402-domain-containing-protein
MGFPMEGETIQIHSYKHDGKLHRVWDQTTVLKSTSSLMIGGNDRTVVTESDGRTWITREPAICYFHSQYWFNVIGMIREDGIYYYCNISSPFTHDQEALKYIDYDLDIKVYPDMTYTLLDEDEYEKHRQEMNYPEAVDRILHTHVEHLKTWIRQRKGPFAPEFIDTWYERFLTYRHA
>NZ_CP040367.1|WP_061786174.1|3462695_3464444_-|ABC-transporter-ATP-binding-protein
MGSIRRYMEFVKPYKWQIVGTVLIGVVKFSIPLLIPLLLKYVLDDVIDSDTLSDSEKVKQLLMIMGGSFFVFLILRPPVEYYRQYYAQWVSSKVLYDIRNQLFDHIQKLSLRYYSNTRVGEIISRVINDVEQTKNFVITGLMNVWLDMFTIVIAIIIMFTMNVPLTLVSIILLPLYALSVRYFYGRLRHLTRVRSQALAEVQGHLHERVQGISVIRSFAIENHEQAQFDDQNRNFLQKAIDHTNWNAKTFAVVNTITDLAPLIVIAFAGYQVINENLSIGTMVAFVGYIDRLYNPLRRLVNSSTTLTQSVASMDRMFEFIDEQYDIVDSPNAKDALEIKGAVQFNNVSFAYEEDEYILHDINLDVEQGKSVAFVGMSGGGKSTIISLIPRFYDVSSGEILIDGVNVKDYQTKNLRDQIGIVLQDTVLFSDTIRNNILLGKPGATDEDVVAAAKAANAHDFIMKLPNGYDTKVGERGMKLSGGQKQRVSIARVFLKNPPILIFDEATSALDLESEHYIQETLEKLAKERTTFIVAHRLSTITHVDEIVLVQDGKVVEQGSHGELMKKKGYYYDLFTVQQLGQN
>NZ_CP040367.1|WP_138116520.1|3460959_3462537_-|IS1182-family-transposase
MFKDYNMNQVVLPLDLEIKLQENDIAFAVHHLVEHIPDEAFAGFLQKTGCPAYHPRMMMKIILCAYTQSVFSGRKIEALLKDSIRMMWLAQGYEPSYRTINRFRVHPEVQVLLRECFVQFRCQLIQENEIDNEAIFIDGTKIEANANKFTFVWRKSIEKYSASLLEKSTQLYDELVEREIIPQIERESSDELSVEELSLITKKLEEKVEELTKEIEASEDADERKQLRSSRKEPKKAYKQFQDFVKRKLKYEKDMEIFNERNSYSKTDHDATFMRMKDDYMKNGQLKAGYNVQIATEGQYTLAYDVFSNPTDTRTLCPFLDAIEHHYFELPDYIVADAGYGSEENYLDVQNRKRTPLITYSMYRKEKKKRVKNDPFQTANWDYHEEDDSFTCPNGNKLTFRYKSHRTDRYGFTRLFNVYECEDCSGCPFRSQCTKAKEGKNRRIHYNEKWEQQKKSIQQLLSEEKTGKIYGKRKIDVEPVFGYLKANLRFTRMSVRGKENVKNELGFAFMAVNVRKYIASSVKCA
>NZ_CP040367.1|WP_025909541.1|3459769_3460858_+|aromatic-acid-exporter-family-protein
MKLGARILKTGIAITLSLLVAELLNLPSPTFAAIAAVFAIQPSIYRSYLTVLEQIQANVIGALLAVGFGLLFGTHPFIIGLTAVMVITLNLKLKIGNTIGLALVTVIAIMESPSDDFVQFAVIRFATVLLGVFSAFIVNLIFLPPKYETKLYYKIVGTTEEIIKWIRMNIYHASEYTLLKEDIEKIKDQLTKANQLFDFYKEERTNSKKKVFVKSRKLVLFRQMITTTSHALKTLKQLHRLENDIQHMPQSFQNLIKSEMECLLMYHEQALLKFIGKLKVQLTTSVPTEAYTKKRALIDAFMKYKLLEDDEDNKMLYHLFPLIASIIEYSEELEHLDRLIDSFHNYHKEDNALEINHEREQD
>NZ_CP040367.1|WP_061786175.1|3458256_3459555_+|glutamate-1-semialdehyde-2,1-aminomutase
MQFTKSEQLHGEALQHIVGGVNSPSRSYKAVGGGSPVAMEKAKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITHAAETGVLYGTPTAHEVKFAKMLKEAMPAMDKVRFVNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAKEVITVPFNDIQPFKEALEKWGDQIAGVLVEPIVGNFGIVEPHPGFLEQVNELTHAAGALVIYDEVITAFRFMYGGAQDLLGVKPDLTALGKIIGGGLPIGAYGGKQEIMEKVAPLGPAYQAGTMAGNPASMLSGIACLEVLKEEGVYDKMDKLGAMLEEGILKHARTYKMPITINRLKGALTLYFTTETVTNYEQAENTDGELFAKFFKLMLHQGINLAPSKYEAWFLTTEHTEEDIHVTLEAVEKAFEQLSKEL
>NZ_CP040367.1|WP_061786176.1|3457095_3458109_-|ATP-binding-cassette-domain-containing-protein
MTNAIEVKGLRKEFKAYSSRSGLKGAFRDLFTRNYKVLKAVNDISFTVKQGEMVGYIGENGAGKSTTIKMLTGILTPTGGEIQVNGMNPHKEREQFTRTIGVVFGQRSQLWWDIAVQESFRLLKKVYKVSDEDYNNHMEHVIRTLDIGPLLDKPVRKLSLGQRMRCELAAALIHNPPLLFLDEPTIGLDVLVKLKIRQFLKEINEKYNTTILLTTHDLADIEALCERVVMLDEGNIIYDGSLQKLRSNWGDMKQVIFEFTKEPLQEQLQLITQGLPVTWVRGDRLNSWVANLENKGDSMSQLIAKVAAKYEIADLSIHEISTEEVIRNIYEEGVVNG
>NZ_CP040367.1|WP_025909544.1|3456311_3457103_-|daunorubicin-ABC-transporter-permease
MDKYIEMIRIRFLMMLAYRTNYYSGILIYAINIGAYYFLWSAIYGGKENIQGLSMTQMTTYVAVSWMARAFYFNNIDREMAMEIKDGKVAVELIKPYNYLGMKMMQGLGEGIFRLLFFSIPGMVIVWFLFPIDLSGHVQTWIYFSFSIIFSFIVNTQINLLTGITTFFLFNNDGLIRAKRVIIDLFSGLLLPISFYPLWAQDLMGYLPFQAISYIPSMIFTEGFTGSEVVTALVTQLIWSLLLFIPIVFLWNVAKKKMVIQGG
>NZ_CP040367.1|WP_025909545.1|3455522_3456308_-|ABC-transporter-permease
MFYFSMFFQYISQYIKTRLQYRADMVVEVVSDLLFQAVNLIFILVVFGHTQFLNGWSREEIIFIYGFFLVPFAVFSSFFNIWDFNERYIVKGEMDRILTRPIHSLFQVILERMELESLFGAITGVAVMIYAGSILDLSFAWYDFFIFILFVLGGALVYAGIFIALASIGFWSDARTSIMPTMYNIGNYGRYPVDIYNNVIRYVLTWILPFAFVGVYPAAYFLGREEWYGYAFLTPVMGVIFFTLAIVLWNVGVKRYRGAGN
>NZ_CP040367.1|WP_138117392.1|3455028_3455430_-|two-pore-domain-potassium-channel-family-protein
MTVSLILVIVFLMVGSMKFLFEKELGEFHFFSLGHFFVLLYSYLTVLLGFSLIYTVCEMSNIEVISGGFYHQEHYFYTLFNSMYFSAITLFSVGYGDMYPVGIGKMFATIEALIGYMMPAVFMIRTVSRNEKV
>NZ_CP040367.1|WP_025909537.1|3466201_3466951_-|enoyl-[acyl-carrier-protein]-reductase-FabL
MEQKVALVTGSSRGIGKEIALRLAKDGYNIVLNYARSKSAALEVAEEVKALGREVLVVKANVGKVEKIKEMFEQIDEAFGRLDVFISNAASGVLRPVMELEETHWDWTMDINSKGYLFCAQEAAKRMEKVGGGKIVTISSLGSIRYLENYTTVGVSKAAVEALTRYLAVELAPKNIIVNAVSGGAVDTEALKHFPNRNELLDDARQHTPTGRMVEPNDMVDAVQFLVSDKANMICGQTLIVDGGRSLLM
>NZ_CP040367.1|WP_061786171.1|3467099_3467324_+|hypothetical-protein
MYVGRDMTELSMMAKTEWRDNELAYFHHSLQQIMPYLNTEGQGIHRQIIEEIENRGGLHRNEADYTHSTNVIYD
>NZ_CP040367.1|WP_076512914.1|3467367_3468462_-|A/G-specific-adenine-glycosylase
MKQSKDIVKDFQIEQFQHDLISWFETEQRILPWRQDQDPYKVWVSEIMLQQTRVDTVIPYFNNFIEKFPTIVDLAYAPEDDVLKAWEGLGYYSRARNLQAAVREVHEQYGGKVPHTPDEISKLKGVGPYTTGAILSIAYGVPQPAVDGNVMRVLSRILSIWDDIAKPKTRKVFEEVVHEIISKDSPSFFNQGLMELGAIVCTPTSPSCLLCPVREHCRAFEQGVQQELPVKSKKKPPRAVQIAAAVVTDEQGNFLIHKRPNKGLLANLWEFPNVEVDLTIGTEQTQLTSFVEADYDTEVVLDPPFTVIQHVFSHIVWNINVYKGVLTGNIANRDDLKLVSVKEIEEYAFPVSHQKILKEYHKIT
>NZ_CP040367.1|WP_025909534.1|3468601_3469582_+|metal-dependent-hydrolase
MDTGTHIAMGIAIGALATLDPVVAASSVTTEAVMIGVIAGSLAPDLDTILKLKNNAHYIRNHRGITHSIPAVALWPLLIIVIVSLFFPNANLFHLWIWTFAAVIIHVFVDVFNAYGTQALRPFTDKWIALGVINTFDYFIFAVHVVAILIWFLGMSPGPTFITMYSIIALYYVWRFYMRHQIAKKIRQKFPDVVKMNISPTIRFTHWHLAITTKENFHVGRAVGQKIFIYDTFKKIPIPESDIIDVAKRDENLAAFLSFSPIYRWEVDEYSDHIEVRFIDLRYRSKDYYPFVAVVQLDYDLNIICSYTGWIFSEKKLRKKLAYLPH
>NZ_CP040367.1|WP_025909533.1|3469639_3469909_-|hypothetical-protein
MEDIFERLTNQLLAKNDTLSYAQARTWVELFWEDFESTYAKAGYEYKGKEAAEQVVKMYINHYGDKLHEVAVKNPKYKHLLNNDDYLKH
>NZ_CP040367.1|WP_025909532.1|3470045_3470204_+|small,-acid-soluble-spore-protein-K
MRNKEKNFPNQSNNKLEGEPRAKAEFASKRADGTINTNPQERMHASNQRTDG
>NZ_CP040367.1|WP_025909531.1|3470248_3470569_-|YfhH-family-protein
MSDKRYSEMSTYEIQQEISVLNDKARKAEQLGMINEYAVLERKIVMAKSYLLDPSSYKPGEVYEIEGAPGQYFKIDYMNGVFAWGFRLGTSEKEEALPISMLKSDS
>NZ_CP040367.1|WP_138117393.1|3470650_3471310_+|SDR-family-NAD(P)-dependent-oxidoreductase
MKTILITGGATGLGNELAKLYVQNGDQVILLGRNEERLNKAQEELGTSCIATVSADLTNYQELTQKMDNLLSFHSVDVLVNNAGMGHFGPLTSYTKEMIDEVIDTNVKGTIYLTQALLPHLQTREQASILTIISTAGLRGKKNESVYVASKFALRGFVESLKVECEHTSVSCTAAYMGGMDTPFWDNSDHIADKSRLKHPSEVASIIFNQRMTKKDIMM
>NZ_CP040367.1|WP_061786517.1|3471341_3472151_-|recombination-regulator-RecX
MTVITKITTQKNSAERFNVYIDQGKGEEFAFGVDANVLIQYDLKKGRVLDEFELAEIQFADEEKKAYNLAVTYLSYRMRSEKEVRDYLKKKEVGDMIVQQVIQRLDSHRYLNDEEFAKAYVLTQVNTTSKGPSVIKRELQEKGIKPDIVQSTLEHFSKEEQIETVMKLIAKLKGKYKKYSEIVMKQKIEQFLVNKGYSFSIINEAMQHVDVEKNSDEEWQALTQQGMKAHRKYAKYSGWEYEQKMKQNLYRKGFSIDQIEAFISSLEEE
>NZ_CP040367.1|WP_138117394.1|3473614_3473866_-|hypothetical-protein
MLGIRVKKDNGKLIIKWQLSTIEIPLDEIIEVTEDETYGGKKAEAIRIGTSYATTDRILIRTTKQDYILFSTNKSAILKQLNS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

920806 : 930130

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094910682.1\|920806_921523_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.7e-48	42.2
WP_061784722.1\|921522_923301_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.3e-24	33.1
WP_025908351.1\|923459_924143_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2D0WXW0	Clostridium_phage	3.3e-13	37.8
WP_138116651.1\|924178_925753_-	phosphoglycerate dehydrogenase	A0A2H4PQU8	Staphylococcus_phage	4.2e-27	28.8
WP_025908353.1\|926415_926991_+	ECF transporter S component	NA	NA	NA	NA
WP_061784720.1\|927037_927286_-	ferredoxin	A0A127AYY7	Bacillus_phage	5.6e-19	56.0
WP_138116652.1\|927544_928597_+	recombinase RecQ	NA	NA	NA	NA
WP_138116653.1\|928612_930130_+	ATP-dependent DNA helicase RecQ	A0A1V0SGM9	Hokovirus	1.8e-51	36.1

DBSCAN-SWA_2

1186806 : 1231370

Bacillus_phage(34.62%)

portal,integrase,terminase,coat,capsid,tail,protease,tRNA,head

attL 1214960:1214975|attR 1216955:1216970

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025908606.1\|1186806_1188336_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_061785716.1\|1188337_1188769_+	hypothetical protein	NA	NA	NA	NA
WP_025908608.1\|1188967_1189513_+\|coat	outer spore coat protein CotE	NA	NA	NA	NA
WP_138116703.1\|1189649_1192298_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.0e-38	25.1
WP_138116704.1\|1192317_1194219_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.1e-66	31.6
WP_138116705.1\|1194457_1194976_+	hypothetical protein	NA	NA	NA	NA
WP_076513904.1\|1195418_1196369_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_025908613.1\|1196403_1196628_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_078989387.1\|1196862_1197819_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	1.2e-53	40.8
WP_061785712.1\|1197849_1198461_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_025908616.1\|1198711_1199974_+	GTPase HflX	NA	NA	NA	NA
WP_025908617.1\|1199989_1201252_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_025908618.1\|1201444_1201867_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_025908619.1\|1201948_1203283_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_025908620.1\|1203385_1204576_-\|integrase	site-specific integrase	S6C485	Thermus_phage	3.6e-63	39.2
WP_062686188.1\|1204588_1205101_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	6.1e-28	44.5
WP_138116706.1\|1205181_1205775_-	hypothetical protein	NA	NA	NA	NA
WP_138116707.1\|1205788_1206415_-	hypothetical protein	NA	NA	NA	NA
WP_138116708.1\|1206383_1207556_-	hypothetical protein	NA	NA	NA	NA
WP_138117552.1\|1207726_1208089_-	helix-turn-helix transcriptional regulator	A0A2I7SDF8	Paenibacillus_phage	7.9e-14	37.3
WP_138116709.1\|1208246_1208459_+	helix-turn-helix domain-containing protein	W8CYU0	Bacillus_phage	1.0e-05	39.6
WP_025908625.1\|1208673_1208964_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025908626.1\|1209076_1209589_+	helix-turn-helix transcriptional regulator	A0A290FZK9	Caldibacillus_phage	1.2e-12	29.7
WP_138116710.1\|1209585_1209843_+	hypothetical protein	NA	NA	NA	NA
WP_138116711.1\|1210389_1211436_+	DnaD domain protein	D2XR43	Bacillus_phage	4.3e-60	47.9
WP_025908629.1\|1211443_1211626_+	Fur-regulated basic protein FbpA	A0A0S2SXY0	Bacillus_phage	8.0e-07	65.1
WP_025908630.1\|1211799_1212111_+	hypothetical protein	NA	NA	NA	NA
WP_062686177.1\|1212107_1212287_+	hypothetical protein	NA	NA	NA	NA
WP_138116712.1\|1212283_1212406_+	DUF1064 domain-containing protein	NA	NA	NA	NA
WP_138116713.1\|1212469_1212784_+	hypothetical protein	NA	NA	NA	NA
WP_138116714.1\|1212814_1213117_+	hypothetical protein	A0A0S2MVE9	Bacillus_phage	3.6e-28	59.0
WP_138116715.1\|1213156_1213387_+	hypothetical protein	NA	NA	NA	NA
WP_138116716.1\|1213402_1213615_+	hypothetical protein	NA	NA	NA	NA
WP_025907123.1\|1213838_1214048_+	hypothetical protein	NA	NA	NA	NA
1214960:1214975	attL	NA	NA	NA	NA
WP_138116717.1\|1214997_1215192_+	hypothetical protein	NA	NA	NA	NA
WP_025907117.1\|1215210_1215654_+	ArpU family transcriptional regulator	S6AVV9	Thermus_phage	5.6e-38	57.4
WP_025907115.1\|1215650_1216193_+\|integrase	site-specific integrase	D2XR58	Bacillus_phage	5.4e-59	62.8
WP_138116718.1\|1216992_1217286_+	HNH endonuclease	R9TNN2	Paenibacillus_phage	1.8e-32	67.7
1216955:1216970	attR	NA	NA	NA	NA
WP_025907113.1\|1217409_1217772_+	hypothetical protein	A0A1B0YE76	Lactobacillus_phage	2.4e-26	55.3
WP_025907112.1\|1217768_1219460_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	7.7e-245	71.0
WP_025907110.1\|1219477_1220683_+\|portal	phage portal protein	A0A290G4I4	Caldibacillus_phage	1.4e-139	60.0
WP_025907109.1\|1220660_1221245_+\|head,protease	HK97 family phage prohead protease	A0A2I7SBY1	Paenibacillus_phage	2.2e-37	48.4
WP_051567033.1\|1221291_1222497_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_062954750.1\|1222513_1222762_+	hypothetical protein	A6XMJ7	Bacillus_virus	5.8e-08	42.9
WP_100346959.1\|1222761_1223040_+	DNA-packaging protein	R9TMB7	Paenibacillus_phage	1.9e-20	54.5
WP_062954752.1\|1223026_1223335_+\|head	phage head closure protein	NA	NA	NA	NA
WP_025907102.1\|1223331_1223694_+	HK97 gp10 family phage protein	A0A0S2SXK7	Bacillus_phage	2.3e-21	49.6
WP_025907100.1\|1223690_1224029_+	DUF3168 domain-containing protein	A0A0S2SY15	Bacillus_phage	8.4e-26	52.3
WP_138116719.1\|1224041_1224626_+\|tail	phage tail protein	A0A0S2SXT6	Bacillus_phage	4.4e-38	45.0
WP_025907096.1\|1224675_1225044_+	hypothetical protein	NA	NA	NA	NA
WP_138116720.1\|1224979_1225186_+	hypothetical protein	NA	NA	NA	NA
WP_138116721.1\|1225200_1229085_+	transglycosylase SLT domain-containing protein	A0A0S2SXL7	Bacillus_phage	4.1e-193	45.9
WP_138116722.1\|1229091_1229907_+\|tail	phage tail family protein	A6M962	Geobacillus_virus	2.7e-54	43.6
WP_138116723.1\|1229915_1231370_+	hypothetical protein	Q9T1A5	Listeria_phage	6.6e-27	30.8

DBSCAN-SWA_3

1236519 : 1242724

Bacillus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138116729.1\|1236519_1236759_+	hypothetical protein	A0A0S2SXN3	Bacillus_phage	7.2e-32	86.1
WP_138116730.1\|1236814_1237846_+	LysM peptidoglycan-binding domain-containing protein	A0A0S2SXM5	Bacillus_phage	4.4e-158	78.6
WP_062954768.1\|1238072_1238705_+	hypothetical protein	NA	NA	NA	NA
WP_082823086.1\|1238848_1239511_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_062954770.1\|1239565_1240237_-	hypothetical protein	A0A0Y0AUX7	Bacillus_phage	2.0e-26	34.0
WP_025907069.1\|1240233_1240440_-	helix-turn-helix transcriptional regulator	A0A0S2SXU5	Bacillus_phage	3.1e-07	45.2
WP_062686132.1\|1240771_1240978_+	hypothetical protein	NA	NA	NA	NA
WP_138116731.1\|1240977_1242144_+	cell division protein FtsK	A0A0S2GLG9	Bacillus_phage	5.4e-64	38.4
WP_138116732.1\|1242031_1242724_+	hypothetical protein	Q0H249	Geobacillus_phage	2.8e-20	37.9

DBSCAN-SWA_4

3660870 : 3669126

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025909070.1\|3660870_3661449_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-30	38.1
WP_025909071.1\|3661445_3662483_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F0L1	Synechococcus_phage	1.7e-69	44.7
WP_025909072.1\|3662509_3663922_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	8.9e-53	31.7
WP_025909073.1\|3663906_3666129_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.3e-162	42.8
WP_076513836.1\|3666112_3666796_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_138117462.1\|3666792_3667044_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_025909076.1\|3667051_3667759_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FGF0	Synechococcus_phage	5.1e-41	39.5
WP_025909077.1\|3667833_3669126_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	3.4e-19	25.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040366

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43362 : 78998

Synechococcus_phage(25.0%)

integrase,transposase,tRNA

attL 37318:37334|attR 86769:86785

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
37318:37334	attL	NA	NA	NA	NA
WP_138116238.1\|43362_44358_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_138116240.1\|45001_46117_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_138116242.1\|46764_47913_-	glutathione-dependent formaldehyde dehydrogenase	E3SJ82	Synechococcus_phage	1.7e-09	27.4
WP_138116244.1\|48777_49335_-	6-phospho-3-hexuloisomerase	NA	NA	NA	NA
WP_138116246.1\|49342_49975_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA
WP_138116248.1\|50207_50552_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_138116250.1\|51150_52605_+	glucose-6-phosphate dehydrogenase	M4SP85	Cyanophage	3.0e-72	35.1
WP_138116252.1\|52672_53566_+	decarboxylating 6-phosphogluconate dehydrogenase	A0A1D8KGX1	Synechococcus_phage	5.8e-58	36.5
WP_138116254.1\|53624_54971_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_138116256.1\|55053_56220_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_138116258.1\|56482_57172_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	5.5e-16	62.9
WP_098366728.1\|57141_57462_-\|transposase	transposase	A0A0N7GFG6	Staphylococcus_phage	7.9e-26	56.9
WP_138116260.1\|57723_58365_-	hypothetical protein	NA	NA	NA	NA
WP_138116262.1\|58846_59083_+	DUF3850 domain-containing protein	A0A059T699	Listeria_phage	1.4e-16	55.1
WP_138116264.1\|59394_59856_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA
WP_138116266.1\|60086_60629_-	recombinase family protein	A0A219YA40	Aeromonas_phage	1.5e-13	30.9
WP_138116268.1\|60809_62273_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.6e-142	56.2
WP_138116270.1\|62293_62713_+	universal stress protein	NA	NA	NA	NA
WP_138116272.1\|62830_64495_+	ribonuclease J	NA	NA	NA	NA
WP_138116274.1\|64788_65334_+	recombinase family protein	M9Q1K0	Clostridium_phage	8.2e-31	41.5
WP_138116276.1\|65376_68325_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.0e-80	26.3
WP_138116252.1\|70090_70984_+	decarboxylating 6-phosphogluconate dehydrogenase	A0A1D8KGX1	Synechococcus_phage	5.8e-58	36.5
WP_138116278.1\|71153_71648_+	hypothetical protein	NA	NA	NA	NA
WP_138116280.1\|72697_73207_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138116282.1\|74102_75251_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_138116284.1\|75730_76702_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138116286.1\|76941_77616_+	hypothetical protein	NA	NA	NA	NA
WP_138116288.1\|77759_78998_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.2e-53	34.1
86769:86785	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040367

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040366

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection