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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040441 Bacillus halodurans isolate LB-1 chromosome, complete genome 9 crisprs cas3,RT,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas5,cas8c,cas7,cas4,cas1,cas2,WYL,cas8b2,csa3,casR,DinG,DEDDh 0 28 11 0

Results visualization

1. NZ_CP040441
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_1 351618-352651 TypeIII I-C
15 spacers
PD-DExK,cas10,csm3gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_2 353843-355533 TypeIII NA:I-C
25 spacers
PD-DExK,cas10,csm3gr7,csm4gr5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_3 362740-364429 TypeI I-C
25 spacers
PD-DExK,cas10,csm3gr7,csm4gr5,cas6,cas3,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_4 372726-373284 TypeI I-C
8 spacers
cas6,csm4gr5,csm3gr7,cas10,PD-DExK,cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_5 374543-375042 TypeI I-C
7 spacers
cas6,csm4gr5,csm3gr7,cas10,PD-DExK,cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_6 383891-385513 TypeI I-C
24 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_7 399679-401818 Unclear NA
32 spacers
WYL,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_8 414990-416267 Unclear NA
19 spacers
cas2,cas1,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040441_9 1014433-1014534 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040441_6 6.15|384858|34|NZ_CP040441|CRISPRCasFinder,CRT,PILER-CR 384858-384891 34 NC_041879 Bacillus phage Mgbh1, complete genome 1104-1137 0 1.0
NZ_CP040441_8 8.10|415611|38|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 415611-415648 38 NC_041879 Bacillus phage Mgbh1, complete genome 38557-38594 0 1.0
NZ_CP040441_8 8.11|415678|36|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 415678-415713 36 NC_041879 Bacillus phage Mgbh1, complete genome 7566-7601 0 1.0
NZ_CP040441_1 1.7|352052|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 352052-352085 34 NC_041879 Bacillus phage Mgbh1, complete genome 23796-23829 1 0.971
NZ_CP040441_8 8.9|415545|37|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 415545-415581 37 NC_041879 Bacillus phage Mgbh1, complete genome 39755-39791 1 0.973
NZ_CP040441_2 2.12|354602|34|NZ_CP040441|CRT,CRISPRCasFinder 354602-354635 34 NC_041879 Bacillus phage Mgbh1, complete genome 32210-32243 2 0.941
NZ_CP040441_7 7.25|401295|37|NZ_CP040441|CRT,CRISPRCasFinder 401295-401331 37 NC_041879 Bacillus phage Mgbh1, complete genome 6241-6277 2 0.946
NZ_CP040441_7 7.56|401296|37|NZ_CP040441|PILER-CR 401296-401332 37 NC_041879 Bacillus phage Mgbh1, complete genome 6241-6277 2 0.946
NZ_CP040441_7 7.32|401753|37|NZ_CP040441|CRT,CRISPRCasFinder 401753-401789 37 NC_041879 Bacillus phage Mgbh1, complete genome 6241-6277 3 0.919
NZ_CP040441_7 7.63|401754|37|NZ_CP040441|PILER-CR 401754-401790 37 NC_041879 Bacillus phage Mgbh1, complete genome 6241-6277 3 0.919
NZ_CP040441_2 2.9|354403|35|NZ_CP040441|CRT,CRISPRCasFinder 354403-354437 35 NC_041879 Bacillus phage Mgbh1, complete genome 4449-4483 4 0.886
NZ_CP040441_2 2.16|354869|31|NZ_CP040441|CRT,CRISPRCasFinder 354869-354899 31 NC_024369 Vibrio phage X29, complete genome 3988-4018 6 0.806
NZ_CP040441_2 2.16|354869|31|NZ_CP040441|CRT,CRISPRCasFinder 354869-354899 31 KJ545483 Vibrio phage phi 2, complete genome 3988-4018 6 0.806
NZ_CP040441_6 6.15|384858|34|NZ_CP040441|CRISPRCasFinder,CRT,PILER-CR 384858-384891 34 NZ_LR134428 Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19 57376-57409 7 0.794
NZ_CP040441_2 2.8|354337|34|NZ_CP040441|CRT,CRISPRCasFinder 354337-354370 34 NZ_CP045339 Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence 1147049-1147082 8 0.765
NZ_CP040441_2 2.16|354869|31|NZ_CP040441|CRT,CRISPRCasFinder 354869-354899 31 MH622942 Microviridae sp. isolate ctcb16, complete genome 1422-1452 8 0.742
NZ_CP040441_2 2.17|354932|33|NZ_CP040441|CRT,CRISPRCasFinder 354932-354964 33 AP014020 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S27-C18, *** SEQUENCING IN PROGRESS *** 36321-36353 8 0.758
NZ_CP040441_2 2.17|354932|33|NZ_CP040441|CRT,CRISPRCasFinder 354932-354964 33 AP014021 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S44-C26, *** SEQUENCING IN PROGRESS *** 34160-34192 8 0.758
NZ_CP040441_4 4.3|372891|33|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 372891-372923 33 MN855994 Bacteriophage sp. isolate 396, complete genome 5405-5437 8 0.758
NZ_CP040441_4 4.4|372956|33|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 372956-372988 33 MN855994 Bacteriophage sp. isolate 396, complete genome 5405-5437 8 0.758
NZ_CP040441_2 2.20|355132|33|NZ_CP040441|CRT,CRISPRCasFinder 355132-355164 33 LC554890 Ralstonia phage RP13 DNA, nearly complete genome 73778-73810 9 0.727
NZ_CP040441_3 3.12|363496|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 363496-363529 34 MF346584 Acinetobacter phage AbP2, complete genome 41136-41169 9 0.735
NZ_CP040441_3 3.19|363960|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 363960-363993 34 MN692965 Marine virus AFVG_117M92, complete genome 11643-11676 9 0.735
NZ_CP040441_3 3.22|364163|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 364163-364196 34 NZ_CP017663 Cronobacter sp. JZ38 plasmid unnamed1, complete sequence 87693-87726 9 0.735
NZ_CP040441_4 4.2|372825|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 372825-372858 34 NZ_CP032156 Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence 26790-26823 9 0.735
NZ_CP040441_6 6.19|385120|34|NZ_CP040441|CRISPRCasFinder,CRT,PILER-CR 385120-385153 34 FQ482085 Erwinia tasmaniensis phage phiEt88 complete genome 42174-42207 9 0.735
NZ_CP040441_6 6.19|385120|34|NZ_CP040441|CRISPRCasFinder,CRT,PILER-CR 385120-385153 34 NC_015295 Erwinia phage phiEt88, complete genome 42174-42207 9 0.735
NZ_CP040441_2 2.3|354006|33|NZ_CP040441|CRT,CRISPRCasFinder 354006-354038 33 NZ_LN868946 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence 69519-69551 10 0.697
NZ_CP040441_2 2.34|354602|46|NZ_CP040441|PILER-CR 354602-354647 46 NC_041879 Bacillus phage Mgbh1, complete genome 32210-32255 10 0.783
NZ_CP040441_3 3.12|363496|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 363496-363529 34 MH853787 Acinetobacter phage vB_KpnM_IME284, complete genome 9291-9324 10 0.706
NZ_CP040441_6 6.4|384123|33|NZ_CP040441|CRISPRCasFinder,CRT 384123-384155 33 NZ_KX976485 Enterococcus avium strain 19081 plasmid pEA19081, complete sequence 61279-61311 10 0.697
NZ_CP040441_6 6.4|384123|33|NZ_CP040441|CRISPRCasFinder,CRT 384123-384155 33 NZ_KX853854 Enterococcus faecium strain A120 plasmid pEMA120, complete sequence 15131-15163 10 0.697
NZ_CP040441_6 6.4|384123|33|NZ_CP040441|CRISPRCasFinder,CRT 384123-384155 33 NC_016967 Enterococcus faecium plasmid pZB18, complete sequence 30677-30709 10 0.697
NZ_CP040441_7 7.16|400697|39|NZ_CP040441|CRT,CRISPRCasFinder 400697-400735 39 NC_022884 Enterococcus mundtii QU 25 plasmid pQY024, complete sequence 6870-6908 11 0.718
NZ_CP040441_7 7.47|400698|39|NZ_CP040441|PILER-CR 400698-400736 39 NC_022884 Enterococcus mundtii QU 25 plasmid pQY024, complete sequence 6870-6908 11 0.718
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP031563 Klebsiella pneumoniae strain 2-1 plasmid pKP21HI1, complete sequence 113025-113059 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP024875 Klebsiella pneumoniae strain NH25 plasmid pNH25.1, complete sequence 66985-67019 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP045194 Klebsiella pneumoniae strain YML0508 plasmid pYML0508_1, complete sequence 109808-109842 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 CP027603 UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence 158178-158212 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_MK773537 Klebsiella pneumoniae strain QDE2 plasmid pQDE2-C, complete sequence 82849-82883 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP050836 Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-2, complete sequence 202841-202875 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP029739 Klebsiella pneumoniae strain AR_0087 plasmid unnamed1, complete sequence 133266-133300 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP042482 Klebsiella pneumoniae strain C51 plasmid pC51_001, complete sequence 98093-98127 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP046613 Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-1, complete sequence 81061-81095 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP021697 Klebsiella pneumoniae strain AR_0158 plasmid tig00000161, complete sequence 124746-124780 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP043934 Klebsiella pneumoniae strain 555 plasmid pSCKLB555-2, complete sequence 72042-72076 12 0.657
NZ_CP040441_5 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT 374641-374675 35 NZ_CP028952 Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence 349357-349391 12 0.657

1. spacer 6.15|384858|34|NZ_CP040441|CRISPRCasFinder,CRT,PILER-CR matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 0, identity: 1.0

cctttcgtttgattttcgtttacttcgatataaa	CRISPR spacer
cctttcgtttgattttcgtttacttcgatataaa	Protospacer
**********************************

2. spacer 8.10|415611|38|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 0, identity: 1.0

ggtcactgttatcgtcgtccaacgatattgcgtgatac	CRISPR spacer
ggtcactgttatcgtcgtccaacgatattgcgtgatac	Protospacer
**************************************

3. spacer 8.11|415678|36|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 0, identity: 1.0

gtgggactggcggagacgtaatacgttgtttatcga	CRISPR spacer
gtgggactggcggagacgtaatacgttgtttatcga	Protospacer
************************************

4. spacer 1.7|352052|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 1, identity: 0.971

gcaggttatctccgaatctgattggtttttcaga	CRISPR spacer
gcaggttatctccgaatctgatcggtttttcaga	Protospacer
**********************.***********

5. spacer 8.9|415545|37|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 1, identity: 0.973

tcgtaaatatcgggagcgtccgttttgtaccggtcct	CRISPR spacer
tcgtaaatatcgggagcgtccgttttgtaccggtctt	Protospacer
***********************************.*

6. spacer 2.12|354602|34|NZ_CP040441|CRT,CRISPRCasFinder matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 2, identity: 0.941

cgttagctttcttcgagaaagtcgaatgttgggg	CRISPR spacer
cgttagctttcttcgaaaaggtcgaatgttgggg	Protospacer
****************.**.**************

7. spacer 7.25|401295|37|NZ_CP040441|CRT,CRISPRCasFinder matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 2, identity: 0.946

gtataggcgtctgtatagcgttatatacgtattttag	CRISPR spacer
gtataggcgtctgtatagcgttacatacgtattttaa	Protospacer
***********************.************.

8. spacer 7.56|401296|37|NZ_CP040441|PILER-CR matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 2, identity: 0.946

gtataggcgtctgtatagcgttatatacgtattttag	CRISPR spacer
gtataggcgtctgtatagcgttacatacgtattttaa	Protospacer
***********************.************.

9. spacer 7.32|401753|37|NZ_CP040441|CRT,CRISPRCasFinder matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 3, identity: 0.919

gtataggcgtctgtatagcgttatatacgcattttga	CRISPR spacer
gtataggcgtctgtatagcgttacatacgtattttaa	Protospacer
***********************.*****.*****.*

10. spacer 7.63|401754|37|NZ_CP040441|PILER-CR matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 3, identity: 0.919

gtataggcgtctgtatagcgttatatacgcattttga	CRISPR spacer
gtataggcgtctgtatagcgttacatacgtattttaa	Protospacer
***********************.*****.*****.*

11. spacer 2.9|354403|35|NZ_CP040441|CRT,CRISPRCasFinder matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 4, identity: 0.886

atagtaagatcgctcctttattggttgttgttgtt	CRISPR spacer
atattaaaatcgctcctttattggttgttgttttc	Protospacer
*** ***.************************ *.

12. spacer 2.16|354869|31|NZ_CP040441|CRT,CRISPRCasFinder matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 6, identity: 0.806

tggatcatcgacaaagctagcaagcgctaac	CRISPR spacer
tttagcatcaacaaagctagcaagctctaaa	Protospacer
*  * ****.*************** **** 

13. spacer 2.16|354869|31|NZ_CP040441|CRT,CRISPRCasFinder matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 6, identity: 0.806

tggatcatcgacaaagctagcaagcgctaac	CRISPR spacer
tttagcatcaacaaagctagcaagctctaaa	Protospacer
*  * ****.*************** **** 

14. spacer 6.15|384858|34|NZ_CP040441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134428 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19) position: , mismatch: 7, identity: 0.794

cctttcgtttgattttcgtttacttcgatataaa	CRISPR spacer
tctttcgtttgaatttcgtttaattctttaaaga	Protospacer
.*********** ********* ***  ** *.*

15. spacer 2.8|354337|34|NZ_CP040441|CRT,CRISPRCasFinder matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 8, identity: 0.765

-ttcaatcactattatttcatctgccgcttttagt	CRISPR spacer
tctctggtac-attttttcatctgcagcttttagt	Protospacer
 .** . .** *** ********** *********

16. spacer 2.16|354869|31|NZ_CP040441|CRT,CRISPRCasFinder matches to MH622942 (Microviridae sp. isolate ctcb16, complete genome) position: , mismatch: 8, identity: 0.742

tggatcatcgacaaagctagcaagcgctaac	CRISPR spacer
aggaacatcgacaaagttagcaaggaagaaa	Protospacer
 *** ***********.******* .  ** 

17. spacer 2.17|354932|33|NZ_CP040441|CRT,CRISPRCasFinder matches to AP014020 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S27-C18, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

ttcgaagagaatcaagatctgatactgcttcca	CRISPR spacer
ctggatataaatcaaaaactgatactgcttcca	Protospacer
.* ** . .******.* ***************

18. spacer 2.17|354932|33|NZ_CP040441|CRT,CRISPRCasFinder matches to AP014021 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S44-C26, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

ttcgaagagaatcaagatctgatactgcttcca	CRISPR spacer
ctggatataaatcaaaaactgatactgcttcca	Protospacer
.* ** . .******.* ***************

19. spacer 4.3|372891|33|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to MN855994 (Bacteriophage sp. isolate 396, complete genome) position: , mismatch: 8, identity: 0.758

cacttatacttgagcaaggcaaaagttgaaatg	CRISPR spacer
aatgaaaactttagcaaagcaaaagttgaaacg	Protospacer
 *.  * **** *****.*************.*

20. spacer 4.4|372956|33|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to MN855994 (Bacteriophage sp. isolate 396, complete genome) position: , mismatch: 8, identity: 0.758

cacttatacttgagcaaggcaaaagttgaaatg	CRISPR spacer
aatgaaaactttagcaaagcaaaagttgaaacg	Protospacer
 *.  * **** *****.*************.*

21. spacer 2.20|355132|33|NZ_CP040441|CRT,CRISPRCasFinder matches to LC554890 (Ralstonia phage RP13 DNA, nearly complete genome) position: , mismatch: 9, identity: 0.727

tattcttaactactacttcgtaagtgatgtcgt	CRISPR spacer
gttccttaactacatcttcgtaagtgataaatt	Protospacer
  *.*********  *************.   *

22. spacer 3.12|363496|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to MF346584 (Acinetobacter phage AbP2, complete genome) position: , mismatch: 9, identity: 0.735

cattccccagttttgaacgataggttcaaactac	CRISPR spacer
aatctgatgattttgaacgatgggttcaaactac	Protospacer
 **..  ...***********.************

23. spacer 3.19|363960|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to MN692965 (Marine virus AFVG_117M92, complete genome) position: , mismatch: 9, identity: 0.735

catttgcg-----gatggttgaagccgaaacacctagat	CRISPR spacer
-----gcgaacacaatggttgaagcagaaacacttagac	Protospacer
     ***     .*********** *******.****.

24. spacer 3.22|364163|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017663 (Cronobacter sp. JZ38 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

tcgcggtggtacaaatacgccttatcccacggag-------	CRISPR spacer
tcgcggttgtacagatacgcctta-------gagttgatct	Protospacer
******* *****.**********       ***       

25. spacer 4.2|372825|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032156 (Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence) position: , mismatch: 9, identity: 0.735

tgataggaggtgattgatcaactcctcgttgttg	CRISPR spacer
cgcgcgcaggtggttgatcaactccacgttgcgg	Protospacer
.*   * *****.************ *****. *

26. spacer 6.19|385120|34|NZ_CP040441|CRISPRCasFinder,CRT,PILER-CR matches to FQ482085 (Erwinia tasmaniensis phage phiEt88 complete genome) position: , mismatch: 9, identity: 0.735

tatttcttcgtcggtcacatcgtaatagtcagcg	CRISPR spacer
tccgttcgggtcggtcatgtcgtaatagtcagcg	Protospacer
* . *..  ********..***************

27. spacer 6.19|385120|34|NZ_CP040441|CRISPRCasFinder,CRT,PILER-CR matches to NC_015295 (Erwinia phage phiEt88, complete genome) position: , mismatch: 9, identity: 0.735

tatttcttcgtcggtcacatcgtaatagtcagcg	CRISPR spacer
tccgttcgggtcggtcatgtcgtaatagtcagcg	Protospacer
* . *..  ********..***************

28. spacer 2.3|354006|33|NZ_CP040441|CRT,CRISPRCasFinder matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.697

attcccctgtaccggtagagcgatagtatcaaa	CRISPR spacer
taacccctgtaccggtagcgcgataatagtgtc	Protospacer
   *************** ******.** ..  

29. spacer 2.34|354602|46|NZ_CP040441|PILER-CR matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 10, identity: 0.783

cgttagctttcttcgagaaagtcgaatgttggggg---tcgcactctac	CRISPR spacer
cgttagctttcttcgaaaaggtcgaatgttggggacacccggacct---	Protospacer
****************.**.**************.   .** **..   

30. spacer 3.12|363496|34|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to MH853787 (Acinetobacter phage vB_KpnM_IME284, complete genome) position: , mismatch: 10, identity: 0.706

cattccccagttttgaacgataggttcaaactac	CRISPR spacer
aatctgatgattttgaacgatgggttcaaaccac	Protospacer
 **..  ...***********.*********.**

31. spacer 6.4|384123|33|NZ_CP040441|CRISPRCasFinder,CRT matches to NZ_KX976485 (Enterococcus avium strain 19081 plasmid pEA19081, complete sequence) position: , mismatch: 10, identity: 0.697

ttatcatgaggtgatcacatggaggtaaaaaac	CRISPR spacer
agaggttgaggtgatcacatgaaggtacaagca	Protospacer
  *   ***************.***** **.  

32. spacer 6.4|384123|33|NZ_CP040441|CRISPRCasFinder,CRT matches to NZ_KX853854 (Enterococcus faecium strain A120 plasmid pEMA120, complete sequence) position: , mismatch: 10, identity: 0.697

ttatcatgaggtgatcacatggaggtaaaaaac	CRISPR spacer
agaggttgaggtgatcacatgaaggtacaagca	Protospacer
  *   ***************.***** **.  

33. spacer 6.4|384123|33|NZ_CP040441|CRISPRCasFinder,CRT matches to NC_016967 (Enterococcus faecium plasmid pZB18, complete sequence) position: , mismatch: 10, identity: 0.697

ttatcatgaggtgatcacatggaggtaaaaaac	CRISPR spacer
agaggttgaggtgatcacatgaaggtacaagca	Protospacer
  *   ***************.***** **.  

34. spacer 7.16|400697|39|NZ_CP040441|CRT,CRISPRCasFinder matches to NC_022884 (Enterococcus mundtii QU 25 plasmid pQY024, complete sequence) position: , mismatch: 11, identity: 0.718

gggcgcgaccttgtttaaaagatagcatatgatttacag	CRISPR spacer
ataattgtccttatttaaaagatagcatattatttatat	Protospacer
. .  .* ****.***************** *****.* 

35. spacer 7.47|400698|39|NZ_CP040441|PILER-CR matches to NC_022884 (Enterococcus mundtii QU 25 plasmid pQY024, complete sequence) position: , mismatch: 11, identity: 0.718

gggcgcgaccttgtttaaaagatagcatatgatttacag	CRISPR spacer
ataattgtccttatttaaaagatagcatattatttatat	Protospacer
. .  .* ****.***************** *****.* 

36. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031563 (Klebsiella pneumoniae strain 2-1 plasmid pKP21HI1, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

37. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024875 (Klebsiella pneumoniae strain NH25 plasmid pNH25.1, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

38. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045194 (Klebsiella pneumoniae strain YML0508 plasmid pYML0508_1, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

39. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to CP027603 (UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

40. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK773537 (Klebsiella pneumoniae strain QDE2 plasmid pQDE2-C, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

41. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050836 (Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-2, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

42. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029739 (Klebsiella pneumoniae strain AR_0087 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

43. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042482 (Klebsiella pneumoniae strain C51 plasmid pC51_001, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

44. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046613 (Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-1, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

45. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021697 (Klebsiella pneumoniae strain AR_0158 plasmid tig00000161, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

46. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043934 (Klebsiella pneumoniae strain 555 plasmid pSCKLB555-2, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

47. spacer 5.2|374641|35|NZ_CP040441|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028952 (Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.657

gggacttaccttttttcaaacgattgtggtgtctt	CRISPR spacer
cttctttaccttttttctgacgattgtggtcgaaa	Protospacer
    .************ .***********     

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 14593 : 23549 7 Geobacillus_phage(100.0%) NA NA
DBSCAN-SWA_2 313330 : 368998 44 Planktothrix_phage(28.57%) bacteriocin,transposase NA
DBSCAN-SWA_3 711001 : 720813 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 1044238 : 1057897 13 Bacillus_phage(72.73%) integrase,holin attL 1053587:1053631|attR 1065921:1065965
DBSCAN-SWA_5 1663863 : 1673165 8 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1710682 : 1718240 9 Staphylococcus_phage(57.14%) NA NA
DBSCAN-SWA_7 3136124 : 3186373 49 Bacillus_phage(28.57%) protease,coat,tRNA,transposase NA
DBSCAN-SWA_8 3524295 : 3531713 9 Catovirus(33.33%) NA NA
DBSCAN-SWA_9 3608168 : 3709160 105 Bacillus_phage(38.18%) portal,coat,integrase,terminase,capsid,transposase,tail attL 3646830:3646848|attR 3687593:3687611
DBSCAN-SWA_10 3820010 : 3878300 47 uncultured_Caudovirales_phage(18.18%) capsid,transposase NA
DBSCAN-SWA_11 4183395 : 4295077 96 Paenibacillus_phage(13.33%) integrase,transposase attL 4279141:4279155|attR 4299074:4299088
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage