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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039160 Staphylococcus aureus strain Lr6 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,WYL 6 2 10 0
NZ_CP039161 Staphylococcus aureus strain Lr6 plasmid pLr6, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP039160
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_1 344460-344560 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_2 581286-581378 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_3 796021-796102 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_4 1635102-1635185 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_5 1882450-1882715 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_6 2118403-2118483 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_7 2130724-2130809 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_8 2231715-2231907 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039160_9 2382193-2382290 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP039160_5 5.3|1882603|20|NZ_CP039160|CRT 1882603-1882622 20 NZ_CP039160.1 1882774-1882793 0 1.0
NZ_CP039160_8 8.2|2231793|36|NZ_CP039160|CRT 2231793-2231828 36 NZ_CP039160.1 1062495-1062530 0 1.0
NZ_CP039160_8 8.2|2231793|36|NZ_CP039160|CRT 2231793-2231828 36 NZ_CP039160.1 1782038-1782073 1 0.972
NZ_CP039160_8 8.3|2231852|33|NZ_CP039160|CRT 2231852-2231884 33 NZ_CP039160.1 2220935-2220967 1 0.97
NZ_CP039160_8 8.3|2231852|33|NZ_CP039160|CRT 2231852-2231884 33 NZ_CP039160.1 2506336-2506368 1 0.97
NZ_CP039160_8 8.3|2231852|33|NZ_CP039160|CRT 2231852-2231884 33 NZ_CP039160.1 1271106-1271138 1 0.97
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 961128-961158 1 0.968
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 1600733-1600763 1 0.968
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 2220933-2220963 1 0.968
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 2506334-2506364 1 0.968
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 305812-305842 1 0.968
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 1271110-1271140 1 0.968
NZ_CP039160_4 4.1|1635126|36|NZ_CP039160|CRISPRCasFinder 1635126-1635161 36 NZ_CP039160.1 1600732-1600767 2 0.944
NZ_CP039160_5 5.2|1882543|23|NZ_CP039160|CRT 1882543-1882565 23 NZ_CP039160.1 845037-845059 2 0.913
NZ_CP039160_8 8.2|2231793|36|NZ_CP039160|CRT 2231793-2231828 36 NZ_CP039160.1 1600674-1600709 2 0.944
NZ_CP039160_8 8.3|2231852|33|NZ_CP039160|CRT 2231852-2231884 33 NZ_CP039160.1 165058-165090 2 0.939
NZ_CP039160_8 8.3|2231852|33|NZ_CP039160|CRT 2231852-2231884 33 NZ_CP039160.1 750929-750961 2 0.939
NZ_CP039160_8 8.3|2231852|33|NZ_CP039160|CRT 2231852-2231884 33 NZ_CP039160.1 796360-796392 2 0.939
NZ_CP039160_8 8.3|2231852|33|NZ_CP039160|CRT 2231852-2231884 33 NZ_CP039160.1 1919143-1919175 2 0.939
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 165056-165086 2 0.935
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 750927-750957 2 0.935
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 796358-796388 2 0.935
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 1919141-1919171 2 0.935
NZ_CP039160_8 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder 2231850-2231880 31 NZ_CP039160.1 230559-230589 2 0.935

1. spacer 5.3|1882603|20|NZ_CP039160|CRT matches to position: 1882774-1882793, mismatch: 0, identity: 1.0

aaagtcagcttaaaataaca	CRISPR spacer
aaagtcagcttaaaataaca	Protospacer
********************

2. spacer 8.2|2231793|36|NZ_CP039160|CRT matches to position: 1062495-1062530, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

3. spacer 8.2|2231793|36|NZ_CP039160|CRT matches to position: 1782038-1782073, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

4. spacer 8.3|2231852|33|NZ_CP039160|CRT matches to position: 2220935-2220967, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

5. spacer 8.3|2231852|33|NZ_CP039160|CRT matches to position: 2506336-2506368, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

6. spacer 8.3|2231852|33|NZ_CP039160|CRT matches to position: 1271106-1271138, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

7. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 961128-961158, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

8. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 1600733-1600763, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

9. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 2220933-2220963, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

10. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 2506334-2506364, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

11. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 305812-305842, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

12. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 1271110-1271140, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

13. spacer 4.1|1635126|36|NZ_CP039160|CRISPRCasFinder matches to position: 1600732-1600767, mismatch: 2, identity: 0.944

gcacattattgaaagctgacttttggtcagcttcta	CRISPR spacer
gcacattattgtaagctgacttttcgtcagcttcta	Protospacer
*********** ************ ***********

14. spacer 5.2|1882543|23|NZ_CP039160|CRT matches to position: 845037-845059, mismatch: 2, identity: 0.913

cctcaatttctacaaacattgca	CRISPR spacer
cctcaatttctacagacaatgca	Protospacer
**************.*** ****

15. spacer 8.2|2231793|36|NZ_CP039160|CRT matches to position: 1600674-1600709, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

16. spacer 8.3|2231852|33|NZ_CP039160|CRT matches to position: 165058-165090, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgccagcttctg	Protospacer
********** ************.*********

17. spacer 8.3|2231852|33|NZ_CP039160|CRT matches to position: 750929-750961, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgtcagcttctg	Protospacer
********** *********.************

18. spacer 8.3|2231852|33|NZ_CP039160|CRT matches to position: 796360-796392, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgtcagcttctg	Protospacer
********** *********.************

19. spacer 8.3|2231852|33|NZ_CP039160|CRT matches to position: 1919143-1919175, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattatcgtaagctgacttttcgtcagcttctg	Protospacer
******.*** **********************

20. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 165056-165086, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgccagct	Protospacer
************ ************.*****

21. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 750927-750957, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
************ *********.********

22. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 796358-796388, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
************ *********.********

23. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 1919141-1919171, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattatcgtaagctgacttttcgtcagct	Protospacer
********.*** ******************

24. spacer 8.4|2231850|31|NZ_CP039160|CRISPRCasFinder matches to position: 230559-230589, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtatgctgactttccgccagct	Protospacer
**********************.**.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP039160_5 5.2|1882543|23|NZ_CP039160|CRT 1882543-1882565 23 MG969427 Anoxybacillus phage A403, complete genome 23290-23312 2 0.913
NZ_CP039160_7 7.1|2130750|34|NZ_CP039160|CRISPRCasFinder 2130750-2130783 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP039160_7 7.1|2130750|34|NZ_CP039160|CRISPRCasFinder 2130750-2130783 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 5.2|1882543|23|NZ_CP039160|CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 2, identity: 0.913

cctcaatttctacaaacattgca	CRISPR spacer
cctcaatttatagaaacattgca	Protospacer
********* ** **********

2. spacer 7.1|2130750|34|NZ_CP039160|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

3. spacer 7.1|2130750|34|NZ_CP039160|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 675742 : 683562 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 695534 : 709876 16 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 760639 : 775248 17 Staphylococcus_phage(76.92%) integrase attL 760562:760576|attR 765703:765717
DBSCAN-SWA_4 962638 : 971111 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1431626 : 1515670 105 Staphylococcus_phage(83.54%) portal,tRNA,capsid,tail,head,integrase,terminase,holin,protease attL 1457437:1457452|attR 1519826:1519841
DBSCAN-SWA_6 1572295 : 1580607 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1650291 : 1659334 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1787157 : 1799892 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_9 1803051 : 1834976 36 Staphylococcus_phage(90.32%) protease NA
DBSCAN-SWA_10 1944464 : 2000998 55 Staphylococcus_phage(56.52%) terminase,coat,protease,integrase attL 1956398:1956414|attR 1979851:1979867
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage