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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP035309 Macrococcus canis strain KM0218 chromosome, complete genome 4 crisprs WYL,RT,cas3,DEDDh,DinG,csa3 11 2 6 0

Results visualization

1. NZ_CP035309
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035309_1 1161710-1161795 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035309_2 1565266-1565439 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035309_3 1756710-1756818 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035309_4 2011027-2012352 Orphan NA
24 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP035309_4 4.16|2011969|18|NZ_CP035309|CRT 2011969-2011986 18 NZ_CP035309.1 2011009-2011026 0 1.0
NZ_CP035309_2 2.1|1565323|22|NZ_CP035309|PILER-CR 1565323-1565344 22 NZ_CP035309.1 1904072-1904093 1 0.955
NZ_CP035309_2 2.1|1565323|22|NZ_CP035309|PILER-CR 1565323-1565344 22 NZ_CP035309.1 1904196-1904217 1 0.955
NZ_CP035309_4 4.13|2011849|18|NZ_CP035309|CRT 2011849-2011866 18 NZ_CP035309.1 2011021-2011038 1 0.944
NZ_CP035309_4 4.20|2012137|18|NZ_CP035309|CRT 2012137-2012154 18 NZ_CP035309.1 2011021-2011038 1 0.944
NZ_CP035309_4 4.9|2011657|18|NZ_CP035309|CRT 2011657-2011674 18 NZ_CP035309.1 2011021-2011038 2 0.889
NZ_CP035309_4 4.12|2011801|30|NZ_CP035309|CRT 2011801-2011830 30 NZ_CP035309.1 2011021-2011050 2 0.933
NZ_CP035309_4 4.15|2011933|18|NZ_CP035309|CRT 2011933-2011950 18 NZ_CP035309.1 543847-543864 2 0.889
NZ_CP035309_4 4.16|2011969|18|NZ_CP035309|CRT 2011969-2011986 18 NZ_CP035309.1 2010997-2011014 2 0.889
NZ_CP035309_4 4.17|2012005|18|NZ_CP035309|CRT 2012005-2012022 18 NZ_CP035309.1 2010997-2011014 2 0.889
NZ_CP035309_4 4.17|2012005|18|NZ_CP035309|CRT 2012005-2012022 18 NZ_CP035309.1 2011009-2011026 2 0.889
NZ_CP035309_4 4.18|2012041|30|NZ_CP035309|CRT 2012041-2012070 30 NZ_CP035309.1 2010997-2011026 2 0.933
NZ_CP035309_4 4.22|2012233|18|NZ_CP035309|CRT 2012233-2012250 18 NZ_CP035309.1 2011021-2011038 2 0.889
NZ_CP035309_4 4.23|2012269|30|NZ_CP035309|CRT 2012269-2012298 30 NZ_CP035309.1 2010997-2011026 2 0.933

1. spacer 4.16|2011969|18|NZ_CP035309|CRT matches to position: 2011009-2011026, mismatch: 0, identity: 1.0

tactgagtctgtcactga	CRISPR spacer
tactgagtctgtcactga	Protospacer
******************

2. spacer 2.1|1565323|22|NZ_CP035309|PILER-CR matches to position: 1904072-1904093, mismatch: 1, identity: 0.955

cgctcactgcaaaggactctca	CRISPR spacer
cgctcacttcaaaggactctca	Protospacer
******** *************

3. spacer 2.1|1565323|22|NZ_CP035309|PILER-CR matches to position: 1904196-1904217, mismatch: 1, identity: 0.955

cgctcactgcaaaggactctca	CRISPR spacer
cgctcacttcaaaggactctca	Protospacer
******** *************

4. spacer 4.13|2011849|18|NZ_CP035309|CRT matches to position: 2011021-2011038, mismatch: 1, identity: 0.944

cactgaatctgttactga	CRISPR spacer
cactgaatctgttaatga	Protospacer
************** ***

5. spacer 4.20|2012137|18|NZ_CP035309|CRT matches to position: 2011021-2011038, mismatch: 1, identity: 0.944

cactgaatctgttactga	CRISPR spacer
cactgaatctgttaatga	Protospacer
************** ***

6. spacer 4.9|2011657|18|NZ_CP035309|CRT matches to position: 2011021-2011038, mismatch: 2, identity: 0.889

cactgaatccgttactga	CRISPR spacer
cactgaatctgttaatga	Protospacer
*********.**** ***

7. spacer 4.12|2011801|30|NZ_CP035309|CRT matches to position: 2011021-2011050, mismatch: 2, identity: 0.933

cactgaatctgttactgaatccgttactga	CRISPR spacer
cactgaatctgttaatgaatccgtcactga	Protospacer
************** *********.*****

8. spacer 4.15|2011933|18|NZ_CP035309|CRT matches to position: 543847-543864, mismatch: 2, identity: 0.889

tactgaatccgttactga	CRISPR spacer
tattgcatccgttactga	Protospacer
**.** ************

9. spacer 4.16|2011969|18|NZ_CP035309|CRT matches to position: 2010997-2011014, mismatch: 2, identity: 0.889

tactgagtctgtcactga	CRISPR spacer
taatgagtctgttactga	Protospacer
** *********.*****

10. spacer 4.17|2012005|18|NZ_CP035309|CRT matches to position: 2010997-2011014, mismatch: 2, identity: 0.889

tactgagtccgttactga	CRISPR spacer
taatgagtctgttactga	Protospacer
** ******.********

11. spacer 4.17|2012005|18|NZ_CP035309|CRT matches to position: 2011009-2011026, mismatch: 2, identity: 0.889

tactgagtccgttactga	CRISPR spacer
tactgagtctgtcactga	Protospacer
*********.**.*****

12. spacer 4.18|2012041|30|NZ_CP035309|CRT matches to position: 2010997-2011026, mismatch: 2, identity: 0.933

tactgaatctgttactgagtctgtcactga	CRISPR spacer
taatgagtctgttactgagtctgtcactga	Protospacer
** ***.***********************

13. spacer 4.22|2012233|18|NZ_CP035309|CRT matches to position: 2011021-2011038, mismatch: 2, identity: 0.889

cactgaatctgtcactga	CRISPR spacer
cactgaatctgttaatga	Protospacer
************.* ***

14. spacer 4.23|2012269|30|NZ_CP035309|CRT matches to position: 2010997-2011026, mismatch: 2, identity: 0.933

tactgaatctgttactgagtctgtcactga	CRISPR spacer
taatgagtctgttactgagtctgtcactga	Protospacer
** ***.***********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021803 Cellulophaga phage phi13:2, complete genome 2699-2728 3 0.9
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021803 Cellulophaga phage phi13:2, complete genome 2711-2740 3 0.9
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021789 Cellulophaga phage phi19:3, complete genome 3608-3637 3 0.9
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021789 Cellulophaga phage phi19:3, complete genome 3620-3649 3 0.9
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021789 Cellulophaga phage phi19:3, complete genome 3632-3661 3 0.9
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021803 Cellulophaga phage phi13:2, complete genome 2723-2752 4 0.867
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021789 Cellulophaga phage phi19:3, complete genome 3596-3625 4 0.867
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021789 Cellulophaga phage phi19:3, complete genome 3644-3673 4 0.867
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NC_021803 Cellulophaga phage phi13:2, complete genome 2687-2716 5 0.833
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 MK250029 Prevotella phage Lak-C1, complete genome 118908-118937 6 0.8
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 MK250016 Prevotella phage Lak-A1, complete genome 158682-158711 6 0.8
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 MK250019 Prevotella phage Lak-A2, complete genome 81729-81758 6 0.8
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NZ_AP019369 Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence 16743-16772 7 0.767
NZ_CP035309_4 4.12|2011801|30|NZ_CP035309|CRT 2011801-2011830 30 MK250029 Prevotella phage Lak-C1, complete genome 118908-118937 7 0.767
NZ_CP035309_4 4.12|2011801|30|NZ_CP035309|CRT 2011801-2011830 30 MK250016 Prevotella phage Lak-A1, complete genome 158682-158711 7 0.767
NZ_CP035309_4 4.12|2011801|30|NZ_CP035309|CRT 2011801-2011830 30 MK250019 Prevotella phage Lak-A2, complete genome 81729-81758 7 0.767
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 MN693411 Marine virus AFVG_25M210, complete genome 22329-22358 8 0.733
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 NZ_AP018723 Thiomicrorhabdus aquaedulcis strain HaS4 plasmid pTmrp1, complete sequence 4790-4819 8 0.733
NZ_CP035309_4 4.7|2011561|30|NZ_CP035309|CRT 2011561-2011590 30 MN693698 Marine virus AFVG_250M751, complete genome 20699-20728 8 0.733

1. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021803 (Cellulophaga phage phi13:2, complete genome) position: , mismatch: 3, identity: 0.9

tactgaatctgttactgaatctgttactga	CRISPR spacer
tactgtatctgttactgtatctgttactgt	Protospacer
***** *********** *********** 

2. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021803 (Cellulophaga phage phi13:2, complete genome) position: , mismatch: 3, identity: 0.9

tactgaatctgttactgaatctgttactga	CRISPR spacer
tactgtatctgttactgtatctgttactgt	Protospacer
***** *********** *********** 

3. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021789 (Cellulophaga phage phi19:3, complete genome) position: , mismatch: 3, identity: 0.9

tactgaatctgttactgaatctgttactga	CRISPR spacer
tactgtatctgttactgtatctgttactgt	Protospacer
***** *********** *********** 

4. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021789 (Cellulophaga phage phi19:3, complete genome) position: , mismatch: 3, identity: 0.9

tactgaatctgttactgaatctgttactga	CRISPR spacer
tactgtatctgttactgtatctgttactgt	Protospacer
***** *********** *********** 

5. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021789 (Cellulophaga phage phi19:3, complete genome) position: , mismatch: 3, identity: 0.9

tactgaatctgttactgaatctgttactga	CRISPR spacer
tactgtatctgttactgtatctgttactgt	Protospacer
***** *********** *********** 

6. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021803 (Cellulophaga phage phi13:2, complete genome) position: , mismatch: 4, identity: 0.867

tactgaatctgttactgaatctgttactga	CRISPR spacer
tactgtatctgttactgtatctgttactat	Protospacer
***** *********** **********. 

7. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021789 (Cellulophaga phage phi19:3, complete genome) position: , mismatch: 4, identity: 0.867

tactgaatctgttactgaatctgttactga	CRISPR spacer
aactgtatctgttactgtatctgttactgt	Protospacer
 **** *********** *********** 

8. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021789 (Cellulophaga phage phi19:3, complete genome) position: , mismatch: 4, identity: 0.867

tactgaatctgttactgaatctgttactga	CRISPR spacer
tactgtatctgttactgtatctgttactat	Protospacer
***** *********** **********. 

9. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NC_021803 (Cellulophaga phage phi13:2, complete genome) position: , mismatch: 5, identity: 0.833

tactgaatctgttactgaatctgttactga	CRISPR spacer
atctgtatctgttactgtatctgttactgt	Protospacer
  *** *********** *********** 

10. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 6, identity: 0.8

tactgaatctgttactgaatctgttactga	CRISPR spacer
acttaaatctgttactaaatctgttactgt	Protospacer
  .*.***********.************ 

11. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 6, identity: 0.8

tactgaatctgttactgaatctgttactga	CRISPR spacer
acttaaatctgttactaaatctgttactgt	Protospacer
  .*.***********.************ 

12. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 6, identity: 0.8

tactgaatctgttactgaatctgttactga	CRISPR spacer
atttaaatctgttactaaatctgttactgt	Protospacer
  .*.***********.************ 

13. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NZ_AP019369 (Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence) position: , mismatch: 7, identity: 0.767

tactgaatctgttactgaatctgttactga	CRISPR spacer
ctctgaatctattactaaatctgttaattc	Protospacer
. ********.*****.********* *  

14. spacer 4.12|2011801|30|NZ_CP035309|CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 7, identity: 0.767

cactgaatctgttactgaatccgttactga	CRISPR spacer
acttaaatctgttactaaatctgttactgt	Protospacer
  .*.***********.****.******* 

15. spacer 4.12|2011801|30|NZ_CP035309|CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

cactgaatctgttactgaatccgttactga	CRISPR spacer
acttaaatctgttactaaatctgttactgt	Protospacer
  .*.***********.****.******* 

16. spacer 4.12|2011801|30|NZ_CP035309|CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.767

cactgaatctgttactgaatccgttactga	CRISPR spacer
atttaaatctgttactaaatctgttactgt	Protospacer
  .*.***********.****.******* 

17. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to MN693411 (Marine virus AFVG_25M210, complete genome) position: , mismatch: 8, identity: 0.733

tactgaatctgttactgaatctgttactga	CRISPR spacer
acccttgcctgttgctgaatctgttactga	Protospacer
  *.  ..*****.****************

18. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to NZ_AP018723 (Thiomicrorhabdus aquaedulcis strain HaS4 plasmid pTmrp1, complete sequence) position: , mismatch: 8, identity: 0.733

tactgaatctgttactgaatctgttactga	CRISPR spacer
aactgaatttgttactgaatttgtaaacct	Protospacer
 *******.***********.*** * .  

19. spacer 4.7|2011561|30|NZ_CP035309|CRT matches to MN693698 (Marine virus AFVG_250M751, complete genome) position: , mismatch: 8, identity: 0.733

tactgaatctgttactgaatctgttactga	CRISPR spacer
tactggatctgttactgcatctgccatatc	Protospacer
*****.*********** *****..*.   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 614966 : 623610 7 Acinetobacter_phage(33.33%) NA NA
DBSCAN-SWA_2 850709 : 859100 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 1410531 : 1428510 14 uncultured_Mediterranean_phage(27.27%) tRNA NA
DBSCAN-SWA_4 1600261 : 1607569 8 Staphylococcus_phage(71.43%) NA NA
DBSCAN-SWA_5 1658475 : 1666336 8 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_6 2210656 : 2222306 13 Staphylococcus_phage(55.56%) transposase,integrase attL 2205718:2205735|attR 2219131:2219148
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage