CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP035541	Staphylococcus haemolyticus strain PK-01 chromosome, complete genome	2 crisprs	csa3,WYL,DEDDh,cas3,DinG	0	1	10	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP035541_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035541_1

1981597-1981683

Orphan

Consensus_repeat	Method
GAATTTCCATGTGAAATTCTCTCTGCTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035541_1

>merge|NZ_CP035541|1|1981597-1981683|CRISPRCasFinder
GAATTTCCATGTGAAATTCTCTCTGCTGGGCCCCAACCCCAGCCTGCTTTGCTTGTGGAATTTCCATGTGAAATTCTCTTTGCTGGG

>NZ_CP035541|1|1|1981597-1981683|CRISPRCasFinder
GAATTTCCATGTGAAATTCTCTCTGCTGGG	CCCCAACCCCAGCCTGCTTTGCTTGTG
GAATTTCCATGTGAAATTCTCTTTGCTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035541.1\|WP_011276257.1\|1995028_1996411_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP035541.1\|WP_016931173.1\|1973086_1975696_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP035541.1\|WP_016931172.1\|1978772_1979597_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP035541.1\|WP_011276241.1\|1972598_1972793_+\|YjzD-family-protein	unknown	unknown	gnl\|CDD\|371396
NZ_CP035541.1\|WP_016931174.1\|1971451_1972393_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_CP035541.1\|WP_016931169.1\|1982929_1986607_-\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP035541.1\|WP_033079773.1\|1986599_1990088_-\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_CP035541.1\|WP_011276252.1\|1990250_1990823_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP035541.1\|WP_037570611.1\|1979678_1981001_+\|CoA-disulfide-reductase	unknown	unknown	gnl\|CDD\|184103
NZ_CP035541.1\|WP_016931170.1\|1981898_1982804_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP035541.1\|WP_011276244.1\|1978263_1978572_-\|metal-sulfur-cluster-assembly-factor	unknown	unknown	gnl\|CDD\|225062
NZ_CP035541.1\|WP_011276243.1\|1975990_1977817_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP035541.1\|WP_011276258.1\|1996598_1997561_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_CP035541.1\|WP_033079774.1\|1993833_1995036_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP035541.1\|WP_011276247.1\|1981074_1981476_-\|YisL-family-protein	unknown	unknown	gnl\|CDD\|237465
NZ_CP035541.1\|WP_011276255.1\|1992168_1993500_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
NZ_CP035541.1\|WP_016931175.1\|1970193_1971438_-\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|274452
NZ_CP035541.1\|WP_016931167.1\|1991366_1991939_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP035541.1\|WP_016931176.1\|1969743_1970121_+\|DUF3899-domain-containing-protein	unknown	unknown	gnl\|CDD\|372441
NZ_CP035541.1\|WP_011276253.1\|1990837_1991362_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044

Protein	Function_ID	Function_description	E-value
NZ_CP035541.1\|WP_011276257.1\|1995028_1996411_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP035541.1\|WP_016931173.1\|1973086_1975696_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP035541.1\|WP_016931172.1\|1978772_1979597_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.2792e-77
NZ_CP035541.1\|WP_011276241.1\|1972598_1972793_+\|YjzD-family-protein	gnl\|CDD\|371396	pfam11151, DUF2929, Protein of unknown function (DUF2929). This family of proteins with unknown function appears to be restricted to Firmicutes.	3.7724e-11
NZ_CP035541.1\|WP_016931174.1\|1971451_1972393_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
NZ_CP035541.1\|WP_016931169.1\|1982929_1986607_-\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP035541.1\|WP_033079773.1\|1986599_1990088_-\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP035541.1\|WP_011276252.1\|1990250_1990823_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.60968e-52
NZ_CP035541.1\|WP_037570611.1\|1979678_1981001_+\|CoA-disulfide-reductase	gnl\|CDD\|184103	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.	0
NZ_CP035541.1\|WP_016931170.1\|1981898_1982804_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	3.73716e-87
NZ_CP035541.1\|WP_011276244.1\|1978263_1978572_-\|metal-sulfur-cluster-assembly-factor	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	5.04644e-41
NZ_CP035541.1\|WP_011276243.1\|1975990_1977817_-\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.63283e-79
NZ_CP035541.1\|WP_011276258.1\|1996598_1997561_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	1.28079e-136
NZ_CP035541.1\|WP_033079774.1\|1993833_1995036_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP035541.1\|WP_011276247.1\|1981074_1981476_-\|YisL-family-protein	gnl\|CDD\|237465	PRK13673, PRK13673, hypothetical protein; Provisional.	9.78366e-34
NZ_CP035541.1\|WP_011276255.1\|1992168_1993500_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP035541.1\|WP_016931175.1\|1970193_1971438_-\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_CP035541.1\|WP_016931167.1\|1991366_1991939_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	2.23065e-27
NZ_CP035541.1\|WP_016931176.1\|1969743_1970121_+\|DUF3899-domain-containing-protein	gnl\|CDD\|372441	pfam13038, DUF3899, Domain of unknown function (DUF3899). Putative Tryptophanyl-tRNA synthetase.	2.26232e-12
NZ_CP035541.1\|WP_011276253.1\|1990837_1991362_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.23511e-34

>NZ_CP035541.1|WP_011276247.1|1981074_1981476_-|YisL-family-protein
MLHMHIASWALTIILYVIAFLHISKSQGPTPMFKPLQMALRVFMLLTLFSGFWLLIQEFMAASHGGGGNHMLLTLKMLCGIAVVALMEVSIAKRKKHEASHGLFWATIILIIITMSLGIILPWGPISSLFGIS
>NZ_CP035541.1|WP_037570611.1|1979678_1981001_+|CoA-disulfide-reductase
MRKIIVVGAVAGGATCASQIRRLDKDSEITIFEKDRDMSFANCGLPYFIGNIVNERKDVLPITPDVFKEKKDITVKTYHEVIAINDKDQTVTVVNRQTNEKFKASYDKLILSPGAGANSLGFDSDYIFTLRNMEDTDAIDQFIDQHQAKKALVVGAGYISLEVLENLYARGLDVTLIHRSEKVNKLMDQDMNQVIFDELDSRHIPYRLNEEIVSVKDHLVTFKSGIQEDFDIIIEGVGTHPNSKFIESSNVALDDKGFVKVNYKFETNIPNIYALGDVITSTYRHVNLPAQVPLAWGAHRGASVIAEQLAGNKNIIFKGFLGTNIVKFFDYTLASVGIKVEELTHFDYQMVELNSGTHAGYYPGNTNVHLRVYFDTNNRHLLRAAAVGKTGVDKRIDVLSMAMMSELTIDELTEFEVAYAPPYSHPKDLVNMIGYKARDL
>NZ_CP035541.1|WP_016931172.1|1978772_1979597_+|Cof-type-HAD-IIB-family-hydrolase
MKPYLICLDLDGTLLNDNKEISDYTKQVLTTLKKQGHRIMIATGRPYRASQIYYHELNMDTPIVNFNGAYVHHPKSDDFKTTHEVLDVDLARNMIETLQKAKVTNIIAEVRDHVFINNHDPRLFEGFSMGNPKIETGNLLEELDEAPTSLLVEAEEIYIPRIKQMLTRFYAENIEHRRWGAPFPVIEIVKRGISKARGIDQVKDYLGIEPSHIIAFGDEDNDIEMIKYAKYGIAMDNGLDELKHIANHITYSNNDDGIGRYLNDFFKLNIPYKG
>NZ_CP035541.1|WP_011276244.1|1978263_1978572_-|metal-sulfur-cluster-assembly-factor
MEEALKDSILGALEMVIDPELGIDIVNLGLVYKVNVDDDGLCTVEMTLTSMGCPLGPQIIEQIKTVLAEIPEIQDTEVNIVWNPPWNKDMMSRYAKIALGVG
>NZ_CP035541.1|WP_011276243.1|1975990_1977817_-|acetyltransferase
MKQDFEKGKQRKTKMRYMPGLDGLRAIAVLGIIIYHLNRKWLTGGFIGVDTFFVISGYLITSLLLKEYEERGIISLKQFWIRRVKRLLPAVVALLIVVGIATLIFEPQQIVRVKHDIIAALFYVSNWWYIAKDVNYFEQFSFMPLKHLWSLAIEEQFYLFFPFVLVILLLTIKKYRNVTLILWIISLVSLLAMVIISQPNVGYSRVYFGTDTRLQTLLLGVILAFVWPPFKLKANPPKVLQRSIDGIGILGLIILIYLFFTVKDTSAWIYNGGFYLISGMTLFIIASVVHPSSILAKVLGHRIFVYIGKRSYSLYLWHFPVISFIHIHFVDGQLPIYVYFVDIILTVLFAELSYRYIETPFRREGLKAFSFNYLKRPKFIRTIVSIIAVIPIVLLFLGVFDRFGKDEIDNKANSFNTNDQDKYLVRMMPGENIKIDGSSSNSKSKKQVYTNISPLLIGDSVMVDIGEEFKSQVPKATIDGKVGRHLQEALSIAGNYSNYNKPSDKVVLELGTNGDFTEEELNQLINKFGKAQIYLVNTRVPRDWQDNVNKQLANAAKKHKNVTLVDWYQRSAGHSEYFAPDGVHLENSGVKALSDEIIKTIKKNSKNK
>NZ_CP035541.1|WP_016931173.1|1973086_1975696_-|ATP-dependent-chaperone-ClpB
MDINQMTYAIQGALQKAVELSKENELQNIEIEAILKGTLEETDSLFKSILERANIDTDELNQAYTNKLKNYPSVQGDNIQYGQYIGAKANELLNKAESYMKEYEDEYISMEHVLRAAMDIDDTTKQFVGNKEEVVKEIITKVRGGNHVTSQNPEVNYEALEKYGRDLVEEVRQGKMDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPESLLDKTIFELDLSALVAGAKFRGEFEERLKAVLKEVKESDGRIILFIDEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVGVSEPDVEDTISILRGLKERYEVYHGVRIQDRALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDQVNRRVMQLEIEESALKNESDNASKHRLEELQEELSNEKEKQASLQSRVEQEKEKIANVQEKRAELDRSRQALEDAQTEGNLEKAAELQYGTIPQLENELKEFEEAYQDEQGDSERMIREVVSDEEIGDIVSQWTGIPVSKLVETEREKLLNLSDILHERVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHSVSRLIGAPPGYVGHDEGGQLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLENVKDTGDITEETEKAVMDSLHAFFKPEILNRMDDIVLFKPLSINDMSMIVDKILTQLNIRLMDQRISIEVSDDAKKWLGEEAYEPQFGARPLKRFVQRQIETPLARMMIKESMPEGTVVKVDINDDHELTFDVQKPENE
>NZ_CP035541.1|WP_011276241.1|1972598_1972793_+|YjzD-family-protein
MKYLVTFIWAVILLQMVNFVLNSLNGGGTLNFITPIVLAVIFTIVIAILAAMIKPDDFTRSGNR
>NZ_CP035541.1|WP_016931174.1|1971451_1972393_-|ketoacyl-ACP-synthase-III
MNVGIKGFGAYAPEKVVDNAYFESFLETSDEWISKMTGIKERRWASEDQDTSDLAFEASKKAIEDAGITPADIDMIIVATATGDMPFPSVANILQEKLGTRKVPTMDQLAACSGFMYSMITAKQYVQSGDYKNILVVGADKLSKITDLTDRSTAVLFGDGAGAVVIGEVSEGRGIISYEMGSDGNGGKYLYLNKDTGKLVMNGREVFKFAVRIMGEASTRVVDKAGLQSDDIDMFIPHQANIRIMESARERLGIEREKMSVSVNRFGNTSAASIPLSISQELENGRIKDDDTLVLVGFGGGLTWGAMVIKWGK
>NZ_CP035541.1|WP_016931175.1|1970193_1971438_-|beta-ketoacyl-ACP-synthase-II
MTENKRVVITGMGALSPIGNDAQTSWENALKGVNGIDTITRIDTEDYNVHLAGELKDFNVEDHIEKKEARRMDRFTQYAVVAARQAVEDAKLEINDETANRIGVWIGSGIGGMETFETAHTTLQNKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGSTVTACATGTNSIGEAFKIIQRGDADAMITGGTEAPITHMALAGFSASRALSTNDDKETACRPFQEGRDGFVMGEGAGILVIESLESAQARGAQIYAEIVGYGSTGDAYHITAPAPEGEGGSRAMQAALDDAGIEAKDVQYLNAHGTSTPVGDMYEIRAIKNTFGDAANQLKVSSTKSMTGHLLGATGGLEAIFSALSIRDSKVAPTIHANTPDPECDLDIVPNEAQDLEITYAMSNSLGFGGHNAVLVFKKFED
>NZ_CP035541.1|WP_016931176.1|1969743_1970121_+|DUF3899-domain-containing-protein
MKNLKNWMIWLIITPILSMILWIIFTNHTFVSYINTLFYLSLIIFICIFFILLVQEGIFDATSYGFRRIRYQLSSSSKKRTMADDEFLNPQQVKKEHYFISTWIAPALICNIAYFVMTIIISFLL
>NZ_CP035541.1|WP_016931170.1|1981898_1982804_-|fumarylacetoacetate-hydrolase-family-protein
MKFLSFNYKDAESYGVKVKREDAVWDLKKVFAEFGEGDFHPQTLLEGLQQNQTLDFQEQVRKAVVAAEDSGKADEFKIAFNDIEFLPPVTPPNNVIAFGRNYQDHASELNHEVQRLYVFTKAASSLTGDESTIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYIYGYTIINDITDRNAQNEQDQAFLSKSLTGGCPMGPYIVTKDELPTPENVNIVTKVNNDIRQDGNTSQMINKIDDLIEEISKYVALHPGDIIATGTPAGVGAGLQPPQFLQPGDEVKVTIDNIGTLTTYIAKD
>NZ_CP035541.1|WP_016931169.1|1982929_1986607_-|helicase-exonuclease-AddAB-subunit-AddA
MNNIPIKPKDAQWTDAQWKSIYANGQDILVAAAAGSGKTAVLVERIIQKIIRDEIDVDKLLVVTFTNLSAREMKHRVDQRIQQASIENPNNEHLKNQRIKIHQAQISTLHSFCLKIIQQHYDVIDLDPNFRTISDVENVLLLEQSIDEVLEKHYDTPDIEFLTLVEQLSSDRNDDNFRDLLKRFYNFSIANPSPFEWLDSLVEIYTDDNKHKLYLDELERLSKIYIKAAYHTLLEAENNFLNCIEAEKHLDVIKLEKFKCEKMIEGNVINFEEIINYTSEKLPTITKKLKDTNEDEGISSQFLTNAKDFYDDYKKLLSEVKNKYLMRSYEDLKVDMKRLAPRIQYLVQIVKDIINGFAEKKRSRNVLDFSDYEHFALQILTDQEGNASPIAKEYRSQFEEILVDEYQDTNQVQEAIISKIKRGDESNGNLFMVGDVKQSIYKFRQADPTLFMDKYHRFTKDGDQSGLRIDLSKNFRSRKEVLATTNYLFDHMMDEEVGEIEYDADARLYFGATKYSDKSMPLELHALIQDKSSDNDLEKSEQEARYIAEQVKYIIEHKQVYDMKSETYRQATFKDIVILERGLKNARNLQQVFKDYNIPFHVNSKEGYFEQTEVRLVLSFLRTVDNPLQDIYLVGLMRSVIYQFTEDELANIRVQSMNDDYFYQSILHYMKDQEANPLLVEKLEHFMDDINMYQEYSQSHPVYQLIDKFYNDHYVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFIDELIERNKDFGEENVIGPNDNVVRMMTVHSSKGLEFPYVIYSELSKNFNKGDLRKPLILNQKYGLGIDYFDLEQNVTYPSLSSVVIKSITEKELISEEMRLMYVALTRAKEQLILIGTIDKEETLEKLERLPISGNQIALHKRLSADRPFDLIYSILAKYQSTSLLPEYQFEKSIDNLDESLRPTVDIKIAQFEELSIEDSESEQESRNISDLEVEGSHDDTLKQQINDQLSFKYPYLKDTEKPSKQSVSELKRQLETEESGTSYERVRQYRIGVSTYERPKFLRENKKRKANEIGTLMHTVMQHLPFKETRMTETELNDYINELIEKHIIEEDAKKDIQFEAVMNFIRSDLYMTITQADKVYRELPFVVNQARVDEMPESDEDVSIIQGMIDLIFLKDDQYYFVDYKTDAFNKRRGMTDEEVGIQLRDKYKIQMKYYKNTLETILNSKVYGYLYFFQFGQMSIEEDV
>NZ_CP035541.1|WP_033079773.1|1986599_1990088_-|helicase-exonuclease-AddAB-subunit-AddB
MELNAYIGRAGTGKSHHMIDNIKQQMKEDPLGDPIVLIAPTQSTFQLEQAFVNDKELNGSLRTEVLHFERLSYRVFQEVGGLTEERLTQAATEMMIYDLVQQHKSELKLYQSQVNYYGFSEKLSEQIQDFKKYSVTPEHLHTFLQDNDLKTRTRHKLEDISLIYQYFEERINGEFITSEDSLNHFIDILSQSEWIKRAEVYIDGFHNFSTLEYQIIKALVQSAKKVTVLLTTDGNEDPFSLFRKPSEVLTHLKEIAKDLNIELQQQFFKQQYRFNNKDLIQLEQQFDALQINPIAYDGSINILESSSIREEVNEVARQIIKDTRDKQYRYQDIAILYRDEAYAYLFDSVLPQYDIPFNIDTKRSMTHHPIMEMVRSLLEVIQTNWNISPMMRLIKTNILTNHFKDSAYLIDLLENFVVERGVYGKRWLDEKLFSIDNFTKMGRKEHKLTTEEREDFEQVVHLKNDIIDKILTFEKAMNEAENVRGFATAFYETMEAFDLPKYLMTHRDQLDVDGRHEEAEEIDQIWNGLIQILDDLVTVFDNEEMTLKRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGAMPQPVSSSSLITDEEKKVFEQQAQVELSPTSDILQMDEAFVCYIAMTRGSEQVTFSYSLMGAQGEDKEKSPFIDQIQGLFNGLEVMNIHYQHNAQPLSLMEHPHQTKVVLFESLKAWLEAEMVADVWVDAYQVMRDNDKLNNGLEYLLTALTYDNETVKLDEPLAASLYGSTINASVSRFEGYNDCPFKHYANHGLRLNERTKYKLENFDLGNIFHTALKYISDKVDGDFKNLDNKKIHALTVEALENVLPQVQFNLMDSNAYYRYVSKRIGVIVESTLKALRYQNKNTKFKPQRFEAGFRKTPNNSEELIAQPLITKQGIPVNIRGQIDRIDAYTKDDKSYINIIDYKSSNPSAKLDLKKVYYGKQMQMMTYMDIALQNAQRLGLSNEIKPGGLLYFHVHDERLSFKDWGELEDDALTQDKLEQAFLKEYKLRGLVNSDMDVVDALDIRLEEISKSDIVPVSLKKDGSIGSRGSSVADETTIHKFIKHNKDNFIKTATNIMEGHTEVAPLKFDDQLPCQFCNFQSVCHVDTIIDSKHYRHVDETIDPIKAIQDVELESGDHNE
>NZ_CP035541.1|WP_011276252.1|1990250_1990823_-|signal-peptidase-I
MKKEIVEWIVAIAVGLLLVWVMVNFVAKSYTIKGDSMDPTLKDGEHVMVNILGYKVGDIKKGNVIVFHANQQDDYVKRVIGVPGDNVIYKNDKLYVNGKKINEPYLDYNEKRKQGEYITGSFETKDLLNANPKSNIIPKGKYLVLGDNREVSKDSRAFGLIDRDQIVGKVSFRFWPFSEFKFNFNPDNEK
>NZ_CP035541.1|WP_011276253.1|1990837_1991362_-|signal-peptidase-I
MRRVTSWIVAFLFACLFVMFIQMFLVKSAVVQTDDMSPTLNKGDRVIINKIKVTFNMLKDGDIIMYRHNNQLHFGRLVGKPGESIEVRNGKLYRDDRQVNKFYAKNRDINNFAIRDLHDSDGDIILPNSYFILNDNGDKQSDSRTYGLIDKDDIVGDVSLKYYPFKEFTYQFNK
>NZ_CP035541.1|WP_016931167.1|1991366_1991939_-|TVP38/TMEM64-family-protein
MFHQIEQWFDLLQGFGYLAGFIILFFRAIVPVLPLTLYVILCVHAYGFIAGTIISWLGVVAGTYTVFFFCRKFVNANFMKRIKSRRSIERLIHFIDRQGLVPIFILMCFPFTPNTLVNFVASFSHIRGKYYFIILLISKLISITFLAIMGKSVTSFFTHPVRAIMVLIVTIALWFVGKKVEGYFMGSDKE
>NZ_CP035541.1|WP_011276255.1|1992168_1993500_-|glucose-6-phosphate-isomerase
MTHIQLDYGKALEFFGQHEIDQQQDIVKTIHKTIHEGTGAGSDFLGWVNLPEDYDKKEFSRIVEASKRIKSNSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLSDKDFSVNVISKSGTTTEPAVAFRLFKQLVEDKYGKAEAKKRIFATTDKAKGALKQLADNEGYETFVVPDDVGGRYSVLTAVGLLPIATAGINIESIMIGANKARKELSSDKLDENIAYQYATIRNILYSKGYTTEMLINYEPSMQYFNEWWKQLYGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNNPKHDITIEEDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNVVVNIPRLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDKKKELEERL
>NZ_CP035541.1|WP_033079774.1|1993833_1995036_+|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVKWLIDKGYDVVAVCLDVGEGKDLDVVYSKALDMGAVECHIIDATKEFSDDFVSYAIKGNLMYENSYPLVSALSRPLIAKKLVEIAEQTNSVGIAHGCTGKGNDQVRFEVAIKALNPNLKAFAPVREWGWSREEEIDYAIKHNIPVGINHDSPYSIDQNLWGRANECGILEDPYAAPPKDAYDLTAELEDTPDTPDEIILSFKNGVPVQLNHQDYDLDQLILTLNELAGKHGIGRIDHVENRLVGIKSREIYETPGAEVILKAHKALETLTLTKDVAHFKPVIEKQFAEQTYNGLWFSPLTDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRKSLYTLYDEKLATYTKEDAFNQSAAVGFIDIYGLPTQVNAYLHGGYSNE
>NZ_CP035541.1|WP_011276257.1|1995028_1996411_+|argininosuccinate-lyase
MSSKAWGGRFQQQPEDWVDEFNASIDFDQTLLDEDVQGSIAHATMLANQNIISQDDKDAIINGLKEIQQDFHNGKLAFKKSLEDIHLNIEHELIQRVGDAGGKLHTGRSRNDQVATDLHLYVKKEVLEIQDLIRSFQTSILKLAQSHVDTIMPGYTHLQRAQPISFAHHVMTYFWMLERDYSRFVDSMKRIDISPLGAAALSGTTHPIDRHETQQLLEFSSVYENSLDAVSDRDYIIETLHNISLTMIHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRATGHLMSMLVTLKGLPLAYNKDLQEDKEGLFDSVRTIKGSLRIFEGMLDTMTVNTDRLNETVHQDFSNATELADYLVAKDVPFRKAHEIVGKIVFECIQQGIYLLDVPLERYKELNSNIDQDVYDYLKPENCLSRRKSYGSTGQDAVRHQLKVAEKLLNND
>NZ_CP035541.1|WP_011276258.1|1996598_1997561_+|glycerophosphodiester-phosphodiesterase
MKASNKGIISCLTVASLSLAIIHTPVEASGGESSNTTTTNLTNASKTQNNHTNWSRNLTGERHTTIAHRGASGYAPEHTFAAYDKSYNELGASYIEIDLQRTKDGHLVAMHDETVDRTTNGSGRVEDYTLAELKKLDAGSSFNEQNPQLAKDSYKGATVPTLDEILTRYGTDANYYIETKQPDVYPGMEQQLLDTLNRHNMLTSNSLENGHVLVQSFSEASLLKMHQLNSNVPLIRLLDKGELAQQSEADLQRIRSYAIGVGPEYSDLNAQNTAHLKDLGFLVHPFTVNETADMQRLNQYGVDGVFTNYADQYKAISSQK

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Crispr_ID: NZ_CP035541_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035541_2

2292600-2292689

Orphan

Consensus_repeat	Method
TGTAGAATTTCTTTAGGAAATTCTCTTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035541_2

>merge|NZ_CP035541|2|2292600-2292689|CRISPRCasFinder
TGTAGAATTTCTTTAGGAAATTCTCTTTGTTGGGGCCCCGAACCCCAACTTGCTTATCTTGTAGTATTTCTTTAGGAAATTCTCTTTGTT

>NZ_CP035541|2|2|2292600-2292689|CRISPRCasFinder
TGTAGAATTTCTTTAGGAAATTCTCTTTGTT	GGGGCCCCGAACCCCAACTTGCTTATCT
TGTAGTATTTCTTTAGGAAATTCTCTTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035541.1\|WP_046464824.1\|2299996_2300656_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP035541.1\|WP_011276653.1\|2288165_2288369_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP035541.1\|WP_011276662.1\|2297088_2297541_+\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|226137
NZ_CP035541.1\|WP_033079582.1\|2299216_2299588_-\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|225238
NZ_CP035541.1\|WP_033079589.1\|2283745_2284222_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP035541.1\|WP_016930866.1\|2286183_2286624_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP035541.1\|WP_033079583.1\|2297611_2299090_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP035541.1\|WP_002455702.1\|2300797_2301628_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|223428
NZ_CP035541.1\|WP_048668186.1\|2293646_2294636_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236609
NZ_CP035541.1\|WP_048668185.1\|2290137_2291121_-\|diphosphomevalonate-decarboxylase	unknown	unknown	gnl\|CDD\|225941
NZ_CP035541.1\|WP_011276661.1\|2296308_2297076_+\|threonine/serine-exporter-ThrE-family-protein	unknown	unknown	gnl\|CDD\|225514
NZ_CP035541.1\|WP_016930867.1\|2285118_2286054_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NZ_CP035541.1\|WP_016930864.1\|2289048_2290125_-\|phosphomevalonate-kinase	unknown	unknown	gnl\|CDD\|130287
NZ_CP035541.1\|WP_016930868.1\|2284337_2284874_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP035541.1\|WP_033079581.1\|2299612_2299996_-\|DUF5327-family-protein	unknown	unknown	gnl\|CDD\|379956
NZ_CP035541.1\|WP_011276657.1\|2291125_2292049_-\|mevalonate-kinase	unknown	unknown	gnl\|CDD\|273130
NZ_CP035541.1\|WP_011276654.1\|2288499_2288841_-\|DUF1450-domain-containing-protein	unknown	unknown	gnl\|CDD\|377806
NZ_CP035541.1\|WP_016930865.1\|2286610_2287933_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180907
NZ_CP035541.1\|WP_048668187.1\|2294809_2295559_+\|heme-dependent-peroxidase	unknown	unknown	gnl\|CDD\|237033
NZ_CP035541.1\|WP_016930863.1\|2292804_2293647_-\|lipoate--protein-ligase-family-protein	unknown	unknown	gnl\|CDD\|319742

Protein	Function_ID	Function_description	E-value
NZ_CP035541.1\|WP_046464824.1\|2299996_2300656_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	3.20183e-136
NZ_CP035541.1\|WP_011276653.1\|2288165_2288369_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.54842e-30
NZ_CP035541.1\|WP_011276662.1\|2297088_2297541_+\|threonine/serine-exporter-family-protein	gnl\|CDD\|226137	COG3610, COG3610, Uncharacterized conserved protein [Function unknown].	6.6567e-40
NZ_CP035541.1\|WP_033079582.1\|2299216_2299588_-\|DUF423-domain-containing-protein	gnl\|CDD\|225238	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown].	2.40321e-42
NZ_CP035541.1\|WP_033079589.1\|2283745_2284222_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.17261e-14
NZ_CP035541.1\|WP_016930866.1\|2286183_2286624_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.11175e-17
NZ_CP035541.1\|WP_033079583.1\|2297611_2299090_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	4.17613e-42
NZ_CP035541.1\|WP_002455702.1\|2300797_2301628_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|223428	COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism].	2.21532e-117
NZ_CP035541.1\|WP_048668186.1\|2293646_2294636_-\|phosphate-acetyltransferase	gnl\|CDD\|236609	PRK09653, eutD, phosphotransacetylase.	0
NZ_CP035541.1\|WP_048668185.1\|2290137_2291121_-\|diphosphomevalonate-decarboxylase	gnl\|CDD\|225941	COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism].	1.84457e-131
NZ_CP035541.1\|WP_011276661.1\|2296308_2297076_+\|threonine/serine-exporter-ThrE-family-protein	gnl\|CDD\|225514	COG2966, COG2966, Uncharacterized conserved protein [Function unknown].	1.84179e-68
NZ_CP035541.1\|WP_016930867.1\|2285118_2286054_-\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	1.83962e-164
NZ_CP035541.1\|WP_016930864.1\|2289048_2290125_-\|phosphomevalonate-kinase	gnl\|CDD\|130287	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase. [Central intermediary metabolism, Other].	0
NZ_CP035541.1\|WP_016930868.1\|2284337_2284874_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.55435e-22
NZ_CP035541.1\|WP_033079581.1\|2299612_2299996_-\|DUF5327-family-protein	gnl\|CDD\|379956	pfam17261, DUF5327, Family of unknown function (DUF5327). This bacterial family of proteins has no known function and is mostly found in Bacilli.	7.23352e-05
NZ_CP035541.1\|WP_011276657.1\|2291125_2292049_-\|mevalonate-kinase	gnl\|CDD\|273130	TIGR00549, Mevalonate_kinase, mevalonate kinase. This model represents mevalonate kinase, the third step in the mevalonate pathway of isopentanyl pyrophosphate (IPP) biosynthesis. IPP is a common intermediate for a number of pathways including cholesterol biosynthesis. This model covers enzymes from eukaryotes, archaea and bacteria. The related enzyme from the same pathway, phosphmevalonate kinase, serves as an outgroup for this clade. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped. [Central intermediary metabolism, Other].	6.92339e-97
NZ_CP035541.1\|WP_011276654.1\|2288499_2288841_-\|DUF1450-domain-containing-protein	gnl\|CDD\|377806	pfam07293, DUF1450, Protein of unknown function (DUF1450). This family consists of several hypothetical bacterial proteins of around 80 residues in length. Members of this family contain four highly conserved cysteine residues. The function of this family is unknown.	1.13464e-06
NZ_CP035541.1\|WP_016930865.1\|2286610_2287933_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|180907	PRK07251, PRK07251, FAD-containing oxidoreductase.	2.05673e-180
NZ_CP035541.1\|WP_048668187.1\|2294809_2295559_+\|heme-dependent-peroxidase	gnl\|CDD\|237033	PRK12276, PRK12276, putative heme peroxidase; Provisional.	7.12837e-173
NZ_CP035541.1\|WP_016930863.1\|2292804_2293647_-\|lipoate--protein-ligase-family-protein	gnl\|CDD\|319742	cd16443, LplA, lipoate-protein ligase. Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.	1.28108e-50

>NZ_CP035541.1|WP_011276657.1|2291125_2292049_-|mevalonate-kinase
MVQRGYGESNGKIILIGEHAVTFGEPAIAIPFTSGKVKVLIESLEKGNYSAIQSDVYDGPLYDAPEHLKSLIGHFVENKKVEEPLLIKIQANLPPSRGLGSSAAVAVAFIRASYDYLGLPLTDKELLENADWAERIAHGKPSGIDTKTIVTNQPVWYQKGEVEILKTLDLDGYMVVIDTGVKGSTKQAVEDVHQLCDNDKNYMQVVKHIGSLVYSASEAIEHHSFDQLATIFNQCQDDLRTLTVSHDKIEMFLRLGEENGSVAGKLTGGGRGGSMLILAKELQTAKNIVAAVEKAGAQHTWIEKLGG
>NZ_CP035541.1|WP_048668185.1|2290137_2291121_-|diphosphomevalonate-decarboxylase
MKKNGKARAHTNIALIKYWGKADEALIIPMNNSLSVTLDRFYTETRVTFDETLTEDQLILNGEAVNAKESAKIQRYMEMIRKEAGISEHALIESENFVPTAAGLASSASAYAALAGACNEALQLGLSDKDLSRLARRGSGSASRSIYGGFAEWEKGNDDETSFAHRVEADGWENELAMVFVVINNKSKKVSSRSGMSLTRDTSRFYQYWLDNVEPDLKETKEAIAQKDFKRMGEVIEANGLRMHATNLGAQPPFTYLVPESYDAMRIVHECREAGLPCYFTMDAGPNVKVLIEKKNQQAIVDKFLQEFDQSQIITSDITQSGVEIIK
>NZ_CP035541.1|WP_016930864.1|2289048_2290125_-|phosphomevalonate-kinase
MIQVKAPGKLYVAGEYAVTEPGYKSVLIAVDRFVTASIEASNAVTSTIHSKTLHYEPVTFNRNEDKIDISDANAASQLKYVVTAIEVFEQYARSCNVKLKHFHLEIDSNLDDASGNKYGLGSSAAVLVSVVKALNEFYDMQLSNLYIYKLAVISNMRLQSLSSCGDIAVSVYSGWLAYSTFDHDWVKQQMEETSVNEVLEKNWPGLHIEPLQAPENMEVLIGWTGSPASSPHLVSEVKRLKSDPSFYGRFLDQSHTCVENLIYAFKTNNIKGVQKMIRQNRMIIQQMDNEATVDIETENLKMLCDIGERYGAAAKTSGAGGGDCGIAIIDNRIDKNRIYNEWASHGIKPLKFKIYHGQ
>NZ_CP035541.1|WP_011276654.1|2288499_2288841_-|DUF1450-domain-containing-protein
MKNKFLICDECQAVNIKTLKRKLEKLDPEAEIEIGCQSYCGPGRRKTFAFVNNRPLAALTEDELLEKVTAQLKKPRDPEEEERLRKRNEERKRRKEEQDRKLKEKLAKRKAIK
>NZ_CP035541.1|WP_011276653.1|2288165_2288369_+|cold-shock-protein
MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSGIAGEGYKTLEEGQKVDFDITEGQRGEQATNVVVLS
>NZ_CP035541.1|WP_016930865.1|2286610_2287933_+|FAD-dependent-oxidoreductase
MTHFNLLVIGFGKAGKTLAKYAASQGQHVALVEQSSDNFGGTCINHGCIPSKVLVHDGIDGTDFGTAFSRKKDVVSALNKKNYDNLANDTNIEVFNYKAQFKSNTEVNLLDEDGAIVHTLTADRIVINTGAKSNIPSIPGIESAKHLFDSQGLLNISYQPKHLVIIGGGYIALEFASMFANFGSKVTVIEHGEHIMPREDQDVVAHAIKDLEDKGITFVTNADTLEFKNNNNQTTIVTSKGNFSADAVLIATGRIPNTDLALEETGVELGERGEIKVNEHLQTSVEHIYAVGDVKGGLQFTYISLDDFRILKSTLYGDQSRTTLNRGTIPYTVFIDPPFSRVGLTAKEAQSQGYNYNENTLLVAQIPRHKINNDARGIFKVVIDKDTDLILGATLYGKESEEIINLIKLAIDQHIPYQVLRDTIYTHPTIVESFNDLFNI
>NZ_CP035541.1|WP_016930866.1|2286183_2286624_+|Rrf2-family-transcriptional-regulator
MNLEFNIAVHVLSFLTKHSEEQFNSQDLAELTCLNPVQLRRVTTTLNNQQYIDSIRGKGGGYRANARTPTITLDTLYQLFVLDKLPTQRIFTGSEESYCTISRNIATTMNKYKEQETALALNFYRNLTINDVIKDTLQEDTSNDTF
>NZ_CP035541.1|WP_016930867.1|2285118_2286054_-|aldo/keto-reductase
MADLVQLGKSDVHVFPIALGTNAVGGHNLYPNLDEEQGKDVVRKAIDNGITLLDTAYIYGPERSEELVGQVVQEYPREQVQIATKGSHVIKENDEVVQNNDPDYLKQQVENSLKRLQVDYIDLYYIHFPDEDTPKDKAVAALKELKDEGKIKAIGVSNFSLEQLKEANKDGYVDVVQLEYNLLHRENEEVMKYAAENNITFIPYFPLASGILAGKYEENQTFDDHRAPRRDFQPEVFNDNVRRVKQLQGIAEAHNTSIANVVLAFYLTRPALDVVIPGAKRAEQVVQNIEAANIQLTDDELNKIDELFPIE
>NZ_CP035541.1|WP_016930868.1|2284337_2284874_-|flavodoxin-family-protein
MITVLFGGSRPEGNTAQLTKSAVEGLDYKWIDLTDYQFNPVRDFRHENRDITSYNDDYKQVIDQVLESDTVIFASPVYWYSVSASLKAFIDHWSETLIDDNYKDFKEKMAKKDFRLILVGGDCPKVKAKPGITQMKYTLDFIGAELNGYIIGTAERPGDISKDTFALERAKEWNETLA
>NZ_CP035541.1|WP_033079589.1|2283745_2284222_-|GNAT-family-N-acetyltransferase
MFKVREATPNDVVAIRDVATKAWYNTYLNIYAASTINELLAASYNEQHLKKRLEEQLFLVAEDNDEIIGFANFIYGKELYLSAHYVHPESQHKGYGSSLLKKGLEQFDGKYDAVFLEVDNKNKDAIQYYQNNGFEIVRSYQPEMYGEQMDLALMKRSL
>NZ_CP035541.1|WP_016930863.1|2292804_2293647_-|lipoate--protein-ligase-family-protein
MDLASKYFNDIDWRYVDHSSGLAPMQSFAFDDTFSESVGKDLSCNVVRTWIHQHTVILGIHDSRLPFLKDGIRYLTDEIGYNAIVRNSGGLGVVLDQGVLNISLIFKGQTETTIDEAFTVMYLLICKMFENEDVEIDTREIEHSYCPGKFDLSIDGKKFAGISQRRVRGGIAVQIYLCVEGSGSERAEMMRVFYEHALKGEVTKFKYPDIQPECMASLETLFGREIKVQDVMFQLLHAIKDLGGNLNMDPITEDEWTRYEGYFDKMIDRNEKMNRSIEAD
>NZ_CP035541.1|WP_048668186.1|2293646_2294636_-|phosphate-acetyltransferase
MSSLLDVLQEKLSGKNVKIVLPEGEDERVLTAATQLQATDYVTPVVLGDYDKINLLAKDKGLDVSDIEVINPSTSELKPELVKSFVERRKGKATEEQADELLNNVNYFGTMLVYAGHADGLVSGAAHSTGDTVRPALQIIKTKPGVSKTSGIFFMIKDDQQYVFGDCAINPTLESSDLAEIAVESAKSAKSFGMDPRVAMLSFSTKGSAKSDDVDKVANAVKLAQEKVESEGLTDVVIDGEFQFDAAIVPSVAEKKAPGAKIQGNANVFVFPSLEAGNIGYKIAQRLGGFDAVGPVLQGLNSPVNDLSRGCSTEDVYKLSIITAAQTLQ
>NZ_CP035541.1|WP_048668187.1|2294809_2295559_+|heme-dependent-peroxidase
MSEAAETLDGWYSLHLFYAVDWATFRLVPEDEREAMINEFKTFINDKASAREQQAGDYALYNITGQKADILLWYLRPEMKELNEIENELNKLRIADFLIQTYSYVSVIELGNYLAGKSDEDPYQNPHVRARLYPELPRTEYICFYPMDKRRNETYNWYMLPMEERKKLMYNHGMIGRQYAGKIKQFITGSVGFDDFEWGVTLFSDDVLQFKKIVYEMRFDETTARYGEFGGFYIGHILKTDDFEHFFAI
>NZ_CP035541.1|WP_011276661.1|2296308_2297076_+|threonine/serine-exporter-ThrE-family-protein
MDNTQIHENADEKLIKDVVMMAGRILLESGAEGTRVEDTMTRIARKLGYPESNSFVTNTVIQFTLHNESYPRIFRINSRDTNLIKISQTNEISRLITKGAITLEEAKLKLENIYVAKRDSSLLFKGIAAAIIAISFLYLQDGKLVDVITALLAGGLGYLVVEILDRRLHAQFIPEFLGSLVIGIISVLGHYLLPTGDLATIIIASVMPIVPGVLITNAIQDLFGGHMLMFTTKSLEALVTAFGIGAGVGSVLILV
>NZ_CP035541.1|WP_011276662.1|2297088_2297541_+|threonine/serine-exporter-family-protein
MFWILNLIFSYTASLFFCVIFDAPRKLYLSCGFVGACGWMVYILFYQGLNTHTIYSSFFGSLALGLISHYMARTKREPAIIFMVPGIIPLVPGGLAFDATKNLVLLDFSKAINTMLEVTLIAGAIALGLLFADQISKIILSGFARTRKRI
>NZ_CP035541.1|WP_033079583.1|2297611_2299090_-|APC-family-permease
MSKNNQNQDIDRGDLKQNLSEKFVWAIAYGSCIGWGAFILPGDWIKQSGPIAASIGIVIGALLMILIAVSYGALVEKFPVSGGAFAFSYLSFGRYVSFFSSWFLTFGYVCVVALNATAFSLLVKFLLPDLLNNGKLYTIAGWDVYITEIIIATVLLLVFMLVAIRGASVSGSLQYYFCVAMVIVVLLMFFGSFFGNNFAFENLQPLANPKSGWFTSIIMIVAVAPWAYVGFDSIPQTAEEFNFSPNKTFKLIVYSLLAASLTYVVMILYTGWLSTNNASLNGNLWVTGAETQSAFGYIGLGVLAIAIIMGIFTGLNGFLMSASRLLFSMGRSGIMPTAFSKLHSKYKTPYVAIIFLVAVTLIAPWLGRTALTWIVDMSSTGVSIAYFITCLSAAKLFSFNKESNTYGPVYKTFAIFGSIVSFIFLLLLLVPGSPASLSMPSYIALGGWLVIGLIFFVIRYPKLKRMDNDELSRLILNRSEKEVEDMVDDTYK
>NZ_CP035541.1|WP_033079582.1|2299216_2299588_-|DUF423-domain-containing-protein
MMKLFIILGALCTMMSVGTGAFGAHGLEGKLSDKYMSVWEKAVNYQMYHGLGLIIIGVISGTTSINVNWAGWLLFLGVVFFSGSLYILALTQIRILGAITPIGGVLFIAGWLMLIISTFKFVG
>NZ_CP035541.1|WP_033079581.1|2299612_2299996_-|DUF5327-family-protein
MNRAQVIQLIEHELVQADEATNEQQFEKHMYAIHTLTSIYANNESKPASSKSQGQDFTNTVTTSFSKVNQSLNTSSSQGKSKVTAAEIEAMGRKVPDSMKSSQNNSLPSNTMVTDDEIGNGESIFDF
>NZ_CP035541.1|WP_046464824.1|2299996_2300656_-|uracil-DNA-glycosylase
MEWSDIFHDITTKHDFKAMHDFLEKEYTTQIVYPDRENIYQAFDLTPFEDIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYQELEDDIGCHRTSPHLQDWAREGVLLLNTVLTVRKGEAHSHKDIGWEIFTDEVIQAISKHRDDVVFILWGKPAQQKIKLIDTSKHYIIKSPHPSPLSAYRGFFGSKPYSKTNGYLESKGKSPINWCENGEA
>NZ_CP035541.1|WP_002455702.1|2300797_2301628_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MALKKVLTIAGSDTSAGAGMQADLKTFQELNTYGMVALTAVVTMDKETWSHDVTPLPMDVFEKQLETVISIGPDAVKTGMLGTEEIIKRAGEAFEQSGAKYFVVDPVMVCKGEDEVLNPGNTDAMIKYLLPKATVVTPNLFEAGQLSGLGKLTSIEDMKKAAKIIYDQGAQHIIIKGGKALDQDKSYDLYYDGQTYYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYNRVEHIDVDVKEV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP035541_1	1.1\|1981627\|27\|NZ_CP035541\|CRISPRCasFinder	1981627-1981653	27	MN693238	Marine virus AFVG_25M402, complete genome	24675-24701	6	0.778

1. spacer 1.1|1981627|27|NZ_CP035541|CRISPRCasFinder matches to MN693238 (Marine virus AFVG_25M402, complete genome) position: , mismatch: 6, identity: 0.778

ccccaaccccagcctgctttgcttgtg	CRISPR spacer
taagaatcccagcctgcgttgcttgtg	Protospacer
.   **.********** *********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

83823 : 148641

Staphylococcus_phage(58.82%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001105999.1\|83823_84498_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	2.0e-127	99.1
WP_078098711.1\|84529_85171_+	hypothetical protein	NA	NA	NA	NA
WP_031775208.1\|85447_86029_-	hypothetical protein	NA	NA	NA	NA
WP_001631039.1\|86535_86895_-	hypothetical protein	NA	NA	NA	NA
WP_000391495.1\|87101_87428_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_088403147.1\|87530_87629_+	hypothetical protein	NA	NA	NA	NA
WP_088403146.1\|87748_89683_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.6e-99	36.3
WP_138109455.1\|90844_92173_-	persulfide dioxygenase-sulfurtransferase CstB	NA	NA	NA	NA
WP_000085030.1\|92191_93259_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_000456195.1\|93397_93658_+	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA
WP_000623679.1\|93654_94413_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_016187230.1\|94830_95355_+	DUF1541 domain-containing protein	NA	NA	NA	NA
WP_000653291.1\|95706_96693_+	ADP-ribosylglycohydrolase family protein	A0A172WZB4	Catopsilia_pomona_nucleopolyhedrovirus	6.1e-08	22.2
WP_000842690.1\|98041_98980_+	ribokinase	NA	NA	NA	NA
WP_002499392.1\|99846_100818_+	hypothetical protein	NA	NA	NA	NA
WP_086045745.1\|101254_101335_-	hypothetical protein	A0A0N9SIX5	Staphylococcus_phage	1.0e-06	96.2
WP_000011355.1\|101796_101940_+	hypothetical protein	NA	NA	NA	NA
WP_138109456.1\|101981_102605_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_011274386.1\|103120_103816_-	response regulator transcription factor	NA	NA	NA	NA
WP_016931274.1\|103790_106460_-	sensor histidine kinase KdpD	A0A2K9L0Z8	Tupanvirus	6.0e-10	21.5
WP_000631574.1\|106626_106707_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_011274388.1\|106727_108404_+	potassium-transporting ATPase subunit A	NA	NA	NA	NA
WP_011274389.1\|108422_110444_+	K(+)-transporting ATPase subunit B	E4ZFI9	Streptococcus_phage	1.0e-41	29.2
WP_016931276.1\|110459_111017_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA
WP_016931279.1\|112558_112858_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_053016564.1\|113168_113843_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.9e-125	97.8
WP_002434548.1\|114356_114704_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002434046.1\|114781_115465_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
WP_002434095.1\|115486_116152_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002434486.1\|116155_117160_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_002434567.1\|117168_117534_+	hypothetical protein	NA	NA	NA	NA
WP_011274431.1\|118069_118687_+	CadD family cadmium resistance transporter	NA	NA	NA	NA
WP_011274432.1\|118705_119047_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011274433.1\|119066_119468_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	1.3e-57	82.2
WP_011274434.1\|119485_120775_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.6e-187	81.6
WP_011274435.1\|120774_121092_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.5e-32	64.4
WP_136719840.1\|121383_123405_+	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.3e-65	29.9
WP_087671611.1\|123443_123968_+	DUF1541 domain-containing protein	NA	NA	NA	NA
WP_138109457.1\|124343_124829_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016931284.1\|125009_125423_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_016931285.1\|125491_127030_-	sodium/proline symporter PutP	NA	NA	NA	NA
WP_050897638.1\|128241_128877_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.4e-114	94.8
WP_016931288.1\|129014_130136_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_016931289.1\|130129_131470_+	ferrous iron transporter B	NA	NA	NA	NA
WP_016931293.1\|133403_135566_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	5.4e-41	25.7
WP_126717176.1\|136288_136519_+	hypothetical protein	NA	NA	NA	NA
WP_138109458.1\|136527_137838_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.3e-42	31.4
WP_049426475.1\|138093_139245_-	chromate efflux transporter	NA	NA	NA	NA
WP_016930481.1\|139285_139678_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	3.9e-59	84.6
WP_070499327.1\|139695_140985_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	1.0e-188	81.8
WP_016930483.1\|140987_141302_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	6.4e-36	69.2
WP_016930485.1\|142542_143430_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_053020187.1\|143663_143852_+	hypothetical protein	NA	NA	NA	NA
WP_011274452.1\|143938_144463_+	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_011274453.1\|144536_145415_-	GTP-binding protein	NA	NA	NA	NA
WP_011274454.1\|145681_146665_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_053020186.1\|147270_148641_+\|protease	trypsin-like serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

1100709 : 1155652

Staphylococcus_phage(56.82%)

tRNA,integrase

attL 1106326:1106342|attR 1148456:1148472

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000420682.1\|1100709_1101024_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000985015.1\|1101039_1101426_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000813488.1\|1101454_1102840_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000879507.1\|1102842_1102995_+	hypothetical protein	NA	NA	NA	NA
WP_000398284.1\|1103017_1104223_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_001009056.1\|1104265_1104487_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000342539.1\|1104603_1105101_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_000506270.1\|1105075_1105582_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000331160.1\|1105565_1108013_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
1106326:1106342	attL	NA	NA	NA	NA
WP_000804748.1\|1108015_1110193_+	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_053023762.1\|1110189_1111191_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	1.9e-190	99.7
WP_001224318.1\|1111187_1112120_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-171	99.4
WP_012386611.1\|1112394_1112481_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_000691736.1\|1112496_1114416_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.5
WP_011058338.1\|1114516_1114702_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	3.9e-17	67.9
WP_001227347.1\|1114761_1115115_-	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_013670292.1\|1115319_1115391_+	hypothetical protein	NA	NA	NA	NA
WP_000804885.1\|1115619_1116042_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_000857133.1\|1116038_1116269_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_024273489.1\|1116494_1116635_-	hypothetical protein	NA	NA	NA	NA
WP_000814511.1\|1116729_1116933_+	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_001291561.1\|1117014_1118232_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_053023761.1\|1118565_1119954_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-168	62.2
WP_011275434.1\|1119955_1120963_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.0e-98	52.9
WP_011275435.1\|1120959_1121196_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	6.4e-33	75.9
WP_011275436.1\|1121262_1121736_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.9e-48	57.7
WP_011275437.1\|1121716_1122487_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	4.3e-94	67.1
WP_053035006.1\|1122551_1124144_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	6.1e-276	86.8
WP_037538587.1\|1124535_1125732_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	7.2e-197	87.2
WP_049394701.1\|1125826_1126735_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	8.1e-108	79.4
WP_049394687.1\|1127395_1128232_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	4.8e-123	74.7
WP_049394686.1\|1128297_1128651_-	CrcB family protein	NA	NA	NA	NA
WP_011275444.1\|1128647_1129013_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.9e-34	59.3
WP_011275445.1\|1129105_1129411_-	hypothetical protein	NA	NA	NA	NA
WP_011275446.1\|1129674_1130388_+	transaldolase	M1PR54	Cyanophage	5.0e-20	35.0
WP_011275447.1\|1130608_1131079_+	membrane protein	A0A2H4PQT8	Staphylococcus_phage	1.7e-16	41.2
WP_011275448.1\|1131062_1131509_-	competence protein ComK	NA	NA	NA	NA
WP_011275449.1\|1131510_1131987_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.6e-30	47.4
WP_011275450.1\|1132243_1132465_+	hypothetical protein	NA	NA	NA	NA
WP_011275451.1\|1132672_1133524_+	autolysin	A0A1J0MFB0	Staphylococcus_phage	1.0e-35	36.9
WP_037571131.1\|1134444_1135935_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	9.8e-18	80.7
WP_011275454.1\|1136369_1137413_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.2e-128	62.4
WP_011275455.1\|1137419_1138052_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-79	68.1
WP_011275456.1\|1138067_1139249_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	4.7e-172	73.5
WP_011275457.1\|1139260_1139719_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.8e-59	85.3
WP_011275458.1\|1139770_1140772_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.5e-134	71.2
WP_011275459.1\|1140996_1141824_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_016931327.1\|1142554_1142956_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011275461.1\|1143095_1143656_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	3.3e-75	72.4
WP_011275462.1\|1143652_1144612_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.0e-68	85.4
WP_011275463.1\|1144722_1145910_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	3.9e-179	79.2
WP_011275464.1\|1146208_1148623_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	86.2
1148456:1148472	attR	NA	NA	NA	NA
WP_016931328.1\|1148643_1148955_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	2.8e-36	72.8
WP_138109567.1\|1149181_1155652_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	4.6e-11	29.2

DBSCAN-SWA_3

1413843 : 1423698

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011275715.1\|1413843_1414731_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	3.6e-36	30.7
WP_033079845.1\|1414833_1415355_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_011275717.1\|1415448_1416180_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.2e-08	24.4
WP_011275718.1\|1416172_1416712_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-10	31.2
WP_011275719.1\|1416708_1417446_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_011275720.1\|1417597_1418323_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.1e-46	41.3
WP_011275721.1\|1418303_1420061_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	3.7e-24	32.3
WP_011275723.1\|1420400_1420943_+	ECF transporter S component	NA	NA	NA	NA
WP_002449743.1\|1421014_1421263_-	ferredoxin	A0A127AYY7	Bacillus_phage	5.8e-16	49.3
WP_011275724.1\|1421372_1422326_+	hypothetical protein	NA	NA	NA	NA
WP_011275725.1\|1422318_1423698_+	ATP-dependent DNA helicase RecQ	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	3.8e-56	33.3

DBSCAN-SWA_4

1739402 : 1808734

Staphylococcus_phage(81.54%)

capsid,head,terminase,tail,holin,tRNA,portal,plate,integrase

attL 1794724:1794740|attR 1814106:1814122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016930699.1\|1739402_1742153_-\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	3.3e-88	27.1
WP_138109606.1\|1742377_1743070_-	DivIVA domain-containing protein	NA	NA	NA	NA
WP_016930701.1\|1743112_1743940_-	RNA-binding protein	NA	NA	NA	NA
WP_011276010.1\|1743973_1744264_-	YggT family protein	NA	NA	NA	NA
WP_011276011.1\|1744276_1744870_-	cell division protein SepF	NA	NA	NA	NA
WP_011276012.1\|1744881_1745550_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_011276013.1\|1745648_1746440_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_011276014.1\|1746672_1747854_-	cell division protein FtsZ	NA	NA	NA	NA
WP_011276015.1\|1747883_1749317_-	cell division protein FtsA	NA	NA	NA	NA
WP_011276016.1\|1749420_1750749_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_011276017.1\|1750764_1752114_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_011276018.1\|1752115_1753081_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_016930702.1\|1753373_1755692_-	penicillin-binding protein	NA	NA	NA	NA
WP_016930703.1\|1755672_1756074_-	cell division protein FtsL	NA	NA	NA	NA
WP_011276021.1\|1756087_1757023_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_011276022.1\|1757037_1757469_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_011276023.1\|1757610_1759224_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA
WP_011276024.1\|1759414_1759858_+	N-acetyltransferase	NA	NA	NA	NA
WP_011276025.1\|1759940_1760633_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_011276026.1\|1760743_1760878_-	phenol-soluble modulin PSM-beta-1	NA	NA	NA	NA
WP_011276027.1\|1760941_1761076_-	phenol-soluble modulin PSM-beta-2	NA	NA	NA	NA
WP_011276028.1\|1761132_1761267_-	phenol-soluble modulin PSM-beta-3	NA	NA	NA	NA
WP_011276027.1\|1761321_1761456_-	phenol-soluble modulin PSM-beta-2	NA	NA	NA	NA
WP_011276028.1\|1761515_1761650_-	phenol-soluble modulin PSM-beta-3	NA	NA	NA	NA
WP_117276929.1\|1762722_1763055_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.8e-49	90.0
WP_138109608.1\|1763473_1764868_-	CHAP domain-containing protein	A0A2H4J4H5	uncultured_Caudovirales_phage	1.1e-215	76.9
WP_049395076.1\|1764868_1765129_-\|holin	phage holin	A0A1W6JNV9	Staphylococcus_phage	2.4e-25	67.0
WP_138109610.1\|1765168_1766401_-	hypothetical protein	A0A1W6JNN1	Staphylococcus_phage	3.6e-82	50.3
WP_138109612.1\|1766397_1768044_-\|plate	BppU family phage baseplate upper protein	A0A1W6JNN2	Staphylococcus_phage	3.4e-189	58.6
WP_138109614.1\|1768102_1769710_-	CHAP domain-containing protein	A0A1W6JNK9	Staphylococcus_phage	1.7e-233	90.4
WP_138109761.1\|1769948_1770575_-	hypothetical protein	A0A1W6JQ05	Staphylococcus_phage	2.2e-48	55.8
WP_053028469.1\|1770594_1770963_-	CHAP domain-containing protein	H9A0P7	Staphylococcus_phage	4.4e-44	68.9
WP_049394923.1\|1771016_1771409_-	hypothetical protein	A0A1W6JNM7	Staphylococcus_phage	1.8e-64	100.0
WP_080351961.1\|1771395_1771812_-	hypothetical protein	A0A1W6JNI9	Staphylococcus_phage	5.2e-62	100.0
WP_138109616.1\|1771832_1773071_-\|plate	BppU family phage baseplate upper protein	A0A1W6JNJ0	Staphylococcus_phage	2.6e-197	94.2
WP_138109618.1\|1773083_1774958_-	DUF2817 domain-containing protein	A0A1W6JNJ6	Staphylococcus_phage	0.0e+00	94.9
WP_138109620.1\|1774950_1776285_-	hypothetical protein	A0A1W6JNL7	Staphylococcus_phage	6.3e-250	99.1
WP_138109622.1\|1776295_1777243_-\|tail	phage tail family protein	A0A1W6JNQ4	Staphylococcus_phage	2.0e-181	99.4
WP_138109624.1\|1777254_1781031_-\|tail	phage tail protein	A0A1W6JNM2	Staphylococcus_phage	8.1e-186	88.7
WP_053036870.1\|1781035_1781392_-	hypothetical protein	A0A1W6JNM4	Staphylococcus_phage	1.0e-50	87.6
WP_138109626.1\|1781433_1781799_-\|tail	phage tail protein	A0A1W6JNK2	Staphylococcus_phage	1.2e-57	96.7
WP_070111125.1\|1781864_1782410_-\|tail	phage major tail protein, TP901-1 family	H9A0V7	Staphylococcus_phage	1.5e-80	96.7
WP_138109628.1\|1782455_1782845_-	hypothetical protein	A0A1W6JNL2	Staphylococcus_phage	5.6e-58	87.6
WP_138109629.1\|1782855_1783212_-	hypothetical protein	A0A1W6JNH8	Staphylococcus_phage	2.0e-54	90.7
WP_138109762.1\|1783211_1783493_-	hypothetical protein	A0A1W6JNI2	Staphylococcus_phage	3.6e-46	93.5
WP_053028458.1\|1783510_1783840_-\|head,tail	phage head-tail connector protein	A0A1W6JNH7	Staphylococcus_phage	2.4e-54	100.0
WP_138109631.1\|1783841_1784111_-	hypothetical protein	A0A1W6JNK7	Staphylococcus_phage	8.7e-42	96.6
WP_037570295.1\|1784134_1785064_-\|capsid	phage major capsid protein	A0A1W6JNP7	Staphylococcus_phage	7.4e-141	78.6
WP_037570297.1\|1785079_1785691_-	DUF4355 domain-containing protein	A0A1W6JNL4	Staphylococcus_phage	1.6e-35	93.1
WP_138109633.1\|1786028_1786208_-	hypothetical protein	A0A1W6JNJ1	Staphylococcus_phage	1.0e-22	96.6
WP_138109635.1\|1786204_1787155_-\|head	phage head morphogenesis protein	A0A2H4IYR8	uncultured_Caudovirales_phage	3.6e-151	86.1
WP_138109637.1\|1787161_1788658_-\|portal	phage portal protein	A0A1W6JNG9	Staphylococcus_phage	7.2e-279	96.0
WP_138109639.1\|1788671_1789952_-\|terminase	PBSX family phage terminase large subunit	I1W649	Staphylococcus_phage	1.2e-213	84.7
WP_138109641.1\|1789944_1790385_-\|terminase	terminase small subunit	A0A1J0MFQ9	Staphylococcus_phage	2.7e-64	88.2
WP_037570310.1\|1790601_1791021_-	transcriptional regulator	I1W651	Staphylococcus_phage	5.5e-59	84.2
WP_080365705.1\|1791095_1791263_-	transcriptional regulator	A0A1W6JNK3	Staphylococcus_phage	1.4e-18	90.7
WP_138109643.1\|1791255_1791468_-	DUF1381 domain-containing protein	A0A1W6JQI3	Staphylococcus_phage	2.1e-27	95.6
WP_138109645.1\|1791487_1791808_-	hypothetical protein	A0A2H4JGL4	uncultured_Caudovirales_phage	4.3e-48	87.5
WP_138109647.1\|1791881_1792304_-	dUTP diphosphatase	A0A1W6JQI5	Staphylococcus_phage	5.3e-70	97.1
WP_138109649.1\|1792577_1792961_-	hypothetical protein	A0A0D4DC71	Staphylococcus_phage	6.0e-28	87.3
WP_138109651.1\|1792941_1793388_-	HNH endonuclease	A0A0D4DD61	Staphylococcus_phage	1.5e-83	99.3
WP_049394860.1\|1793406_1793586_-	hypothetical protein	A0A1W6JQN5	Staphylococcus_phage	1.4e-24	100.0
WP_138109653.1\|1793572_1793770_-	hypothetical protein	A0A1W6JNI7	Staphylococcus_phage	1.7e-26	95.2
WP_138109655.1\|1793766_1795047_-	DNA (cytosine-5-)-methyltransferase	A0A0D4DCJ3	Staphylococcus_phage	3.4e-245	98.8
1794724:1794740	attL	NA	NA	NA	NA
WP_138109657.1\|1795043_1795511_-	hypothetical protein	A0A1W6JNM3	Staphylococcus_phage	3.4e-78	92.2
WP_138109763.1\|1795507_1796053_-	DUF3310 domain-containing protein	A0A2H4J5G4	uncultured_Caudovirales_phage	1.9e-40	57.7
WP_053021993.1\|1796074_1796269_-	hypothetical protein	A0A2H4JBC1	uncultured_Caudovirales_phage	7.1e-30	95.3
WP_053021992.1\|1796273_1796498_-	hypothetical protein	A0A2H4JE91	uncultured_Caudovirales_phage	1.7e-19	95.9
WP_053015886.1\|1796647_1796842_-	hypothetical protein	A0A1W6JNG1	Staphylococcus_phage	2.9e-31	98.4
WP_049396971.1\|1796841_1797246_-	RusA family crossover junction endodeoxyribonuclease	A0A2H4J5E6	uncultured_Caudovirales_phage	3.5e-71	98.5
WP_138109659.1\|1797263_1797668_-	hypothetical protein	NA	NA	NA	NA
WP_070111155.1\|1797674_1797920_-	hypothetical protein	A0A0D4DC62	Staphylococcus_phage	4.0e-38	95.0
WP_138109661.1\|1797894_1798119_-	hypothetical protein	H9A0Z4	Staphylococcus_phage	1.0e-16	50.7
WP_138109663.1\|1798118_1799366_-	AAA family ATPase	H9A0S1	Staphylococcus_phage	4.1e-203	85.1
WP_034172825.1\|1799352_1799715_-	hypothetical protein	H9A0S0	Staphylococcus_phage	1.1e-28	62.6
WP_138109665.1\|1799721_1800516_-	DnaD domain protein	I6SB74	Staphylococcus_virus	2.9e-85	81.2
WP_138109667.1\|1800508_1801186_-	hypothetical protein	A0A0D4DC57	Staphylococcus_phage	4.8e-121	94.1
WP_138109669.1\|1801197_1801614_-	single-stranded DNA-binding protein	A0A0D4DD48	Staphylococcus_phage	6.6e-65	92.0
WP_138109671.1\|1801606_1802248_-	DUF1071 domain-containing protein	A0A2H4J5F4	uncultured_Caudovirales_phage	3.2e-111	91.1
WP_070852473.1\|1802240_1802498_-	DUF2483 family protein	A0A1W6JNE4	Staphylococcus_phage	2.6e-43	97.6
WP_053024788.1\|1802472_1802724_-	hypothetical protein	A0A0D4DCD7	Staphylococcus_phage	2.4e-25	100.0
WP_138109673.1\|1802786_1802978_-	hypothetical protein	A0A1W6JQF5	Staphylococcus_phage	6.8e-17	74.6
WP_126567609.1\|1802980_1803298_-	DUF771 domain-containing protein	A0A2H4JAF6	uncultured_Caudovirales_phage	6.8e-54	98.1
WP_053019422.1\|1803352_1803535_+	hypothetical protein	NA	NA	NA	NA
WP_053034945.1\|1803882_1804422_-	hypothetical protein	NA	NA	NA	NA
WP_053035437.1\|1804414_1805341_-	DUF3102 domain-containing protein	A0A2H4JAH5	uncultured_Caudovirales_phage	3.0e-89	76.8
WP_037557781.1\|1805371_1805611_-	helix-turn-helix transcriptional regulator	A0A1Q1PVY0	Staphylococcus_phage	3.8e-33	92.4
WP_138109675.1\|1805751_1806372_+	helix-turn-helix domain-containing protein	A0A1Q1PVX8	Staphylococcus_phage	8.9e-98	86.4
WP_053024779.1\|1806423_1806987_+	DUF5067 domain-containing protein	A0A1W6JND4	Staphylococcus_phage	6.8e-89	100.0
WP_138109677.1\|1807010_1807649_+	hypothetical protein	A0A1W6JNC8	Staphylococcus_phage	4.6e-41	92.9
WP_138109679.1\|1807708_1808734_+\|integrase	site-specific integrase	A0A1W6JQE7	Staphylococcus_phage	9.6e-190	96.5
1814106:1814122	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1889341 : 1897811

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011276158.1\|1889341_1889908_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.7e-29	40.3
WP_011276159.1\|1889907_1890939_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.7e-69	45.5
WP_011276160.1\|1890931_1892416_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.7e-47	33.6
WP_011276161.1\|1892394_1894584_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.1e-137	39.4
WP_011276162.1\|1894576_1895248_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_011276163.1\|1895249_1895510_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_011276164.1\|1895509_1896214_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.6e-47	42.9
WP_029376687.1\|1896217_1897342_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_011276166.1\|1897328_1897811_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	46.0

DBSCAN-SWA_6

2065827 : 2081832

uncultured_Caudovirales_phage(44.44%)

terminase,integrase

attL 2060731:2060751|attR 2078263:2078283

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2060731:2060751	attL	NA	NA	NA	NA
WP_046309576.1\|2065827_2066190_-	hypothetical protein	I1W651	Staphylococcus_phage	8.1e-19	44.9
WP_046309578.1\|2066247_2066517_-	hypothetical protein	A0A2H4JBE4	uncultured_Caudovirales_phage	3.2e-44	96.6
WP_002476275.1\|2066522_2067095_-\|terminase	terminase small subunit	A0A2H4JBF3	uncultured_Caudovirales_phage	1.4e-102	100.0
WP_046309584.1\|2067105_2067435_-	transcriptional regulator	A0A2H4JEH8	uncultured_Caudovirales_phage	3.8e-39	76.1
WP_053021607.1\|2067431_2067869_-	pathogenicity island protein	A0A2H4JBD6	uncultured_Caudovirales_phage	1.6e-61	86.1
WP_046309589.1\|2067923_2068133_-	hypothetical protein	NA	NA	NA	NA
WP_053021608.1\|2068132_2068720_-	pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	6.5e-74	75.5
WP_053021609.1\|2068797_2069130_-	hypothetical protein	A0A2H4JHK4	uncultured_Caudovirales_phage	1.2e-53	98.2
WP_053027867.1\|2069491_2070076_-	hypothetical protein	NA	NA	NA	NA
WP_138109693.1\|2070072_2070717_-	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	1.7e-75	63.3
WP_049395903.1\|2070718_2071240_-	hypothetical protein	NA	NA	NA	NA
WP_117276939.1\|2071570_2073385_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	8.0e-147	48.8
WP_049395904.1\|2074261_2074552_-	DUF1474 family protein	A0A1W6JPG5	Staphylococcus_phage	3.1e-37	81.4
WP_049395906.1\|2074566_2074773_-	hypothetical protein	A0A2H4JHP9	uncultured_Caudovirales_phage	1.1e-28	97.1
WP_046309612.1\|2074784_2075123_-	hypothetical protein	A0A1W6JPD3	Staphylococcus_phage	4.0e-28	59.8
WP_046309615.1\|2075126_2075540_-	pathogenicity island protein	NA	NA	NA	NA
WP_046309617.1\|2075543_2075744_-	hypothetical protein	A0A2H4JD47	uncultured_Caudovirales_phage	1.0e-26	89.4
WP_138109695.1\|2075756_2075975_-	helix-turn-helix transcriptional regulator	B3GVX4	Streptococcus_phage	4.7e-06	45.6
WP_049395912.1\|2076161_2077079_+	transcriptional regulator	Q9AZH9	Lactococcus_phage	8.4e-12	50.0
WP_049395913.1\|2077068_2078157_+\|integrase	site-specific integrase	H0UST3	Bacillus_phage	2.3e-77	44.4
WP_011276368.1\|2078958_2079429_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.5e-70	86.5
2078263:2078283	attR	NA	NA	NA	NA
WP_138109697.1\|2079453_2081832_-	ribonuclease R	Q0GXV6	Lactococcus_phage	3.6e-91	38.1

DBSCAN-SWA_7

2133630 : 2147799

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011276420.1\|2133630_2134413_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.4e-15	29.6
WP_011276421.1\|2134409_2135369_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	5.7e-11	72.0
WP_011276422.1\|2135358_2136327_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.7e-151	88.5
WP_011276423.1\|2136576_2137545_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	1.4e-177	94.7
WP_011276424.1\|2137672_2139778_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	94.0
WP_011276425.1\|2139740_2140139_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.9e-53	75.8
WP_087503729.1\|2140912_2141812_+	DMT family transporter	NA	NA	NA	NA
WP_011276427.1\|2141817_2142318_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.7e-51	70.8
WP_011276428.1\|2142618_2144124_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.9e-61	32.7
WP_011276429.1\|2145036_2145963_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_011276430.1\|2146035_2146569_-	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	8.0e-31	39.0
WP_011276431.1\|2146743_2147799_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	2.5e-20	27.2

DBSCAN-SWA_8

2162602 : 2169839

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016930964.1\|2162602_2163748_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	5.4e-24	34.9
WP_011276446.1\|2163731_2164325_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	7.1e-36	40.1
WP_011276447.1\|2164687_2165359_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.4e-64	55.9
WP_011276448.1\|2165360_2165780_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	2.2e-07	26.9
WP_011276449.1\|2165779_2166496_+	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	1.6e-50	41.9
WP_076690076.1\|2166600_2167212_+	hypothetical protein	NA	NA	NA	NA
WP_011276451.1\|2167846_2168836_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	5.3e-60	41.2
WP_011276452.1\|2168999_2169839_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.6e-62	44.4

DBSCAN-SWA_9

2456758 : 2462515

uncultured_Caudovirales_phage(83.33%)

terminase,integrase

attL 2459391:2459406|attR 2472598:2472613

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011276817.1\|2456758_2457028_-	hypothetical protein	A0A2H4JBE4	uncultured_Caudovirales_phage	1.0e-42	94.4
WP_011276818.1\|2457033_2457606_-\|terminase	terminase small subunit	A0A2H4JBF3	uncultured_Caudovirales_phage	2.1e-98	95.3
WP_011276819.1\|2457607_2457946_-	helix-turn-helix transcriptional regulator	A0A2H4JEH8	uncultured_Caudovirales_phage	8.9e-44	82.1
WP_011276820.1\|2457942_2458392_-	hypothetical protein	A0A2H4JBD6	uncultured_Caudovirales_phage	3.9e-63	86.4
WP_119881013.1\|2458621_2459842_+	SAP domain-containing protein	NA	NA	NA	NA
2459391:2459406	attL	NA	NA	NA	NA
WP_016931194.1\|2460515_2460710_+	hypothetical protein	NA	NA	NA	NA
WP_100208220.1\|2461013_2461193_+	hypothetical protein	A0A2H4JA11	uncultured_Caudovirales_phage	2.0e-10	56.0
WP_011276827.1\|2461300_2462515_+\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	1.4e-91	46.1
2472598:2472613	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2530383 : 2579265

Staphylococcus_phage(46.15%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016931271.1\|2530383_2531058_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	8.1e-121	92.4
WP_138109733.1\|2531054_2531558_-	GNAT family N-acetyltransferase	A0A1B0RXL7	Streptococcus_phage	4.0e-72	98.6
WP_001105960.1\|2532330_2533005_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.7e-126	97.3
WP_000505741.1\|2533034_2533238_-	hypothetical protein	NA	NA	NA	NA
WP_000369394.1\|2533251_2533989_-	ABC transporter permease	NA	NA	NA	NA
WP_000793446.1\|2533981_2534911_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-41	42.2
WP_000866106.1\|2535904_2536579_-	response regulator transcription factor	NA	NA	NA	NA
WP_001105960.1\|2536664_2537339_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.7e-126	97.3
WP_002380758.1\|2538805_2539213_+	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA
WP_000746201.1\|2539229_2539583_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_002380761.1\|2540384_2540732_+	mercury transporter	NA	NA	NA	NA
WP_012818079.1\|2540789_2542433_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.7e-50	29.4
WP_000790334.1\|2542514_2543165_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_001802816.1\|2543167_2543350_-	hypothetical protein	NA	NA	NA	NA
WP_001105986.1\|2543718_2544393_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	1.5e-127	99.1
WP_138109735.1\|2544422_2545364_-	protein rep	NA	NA	NA	NA
WP_000119405.1\|2545640_2546903_-	plasmid recombination protein	NA	NA	NA	NA
WP_001242578.1\|2547409_2547814_-	bleomycin binding protein	NA	NA	NA	NA
WP_001795128.1\|2548030_2548801_-	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NA	NA	NA	NA
WP_001105986.1\|2549043_2549718_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	1.5e-127	99.1
WP_138109736.1\|2549801_2550020_+	hypothetical protein	E9LUK4	Lactobacillus_phage	1.2e-09	42.9
WP_002497230.1\|2550176_2550278_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_138109737.1\|2550412_2551279_-	DNA adenine methylase	NA	NA	NA	NA
WP_138109738.1\|2551294_2553007_-	AAA family ATPase	NA	NA	NA	NA
WP_016931397.1\|2554130_2554589_+	DUF1307 domain-containing protein	NA	NA	NA	NA
WP_016931398.1\|2555269_2555371_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_083297561.1\|2555601_2556201_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.7e-25	34.9
WP_049426552.1\|2556200_2557343_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.9e-13	27.2
WP_016931400.1\|2557418_2557835_+	hypothetical protein	NA	NA	NA	NA
WP_016931401.1\|2557851_2558799_+	cation transporter	NA	NA	NA	NA
WP_016931402.1\|2559070_2559589_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_053020041.1\|2559677_2560313_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA
WP_053023833.1\|2560414_2560765_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_138109739.1\|2560969_2562466_+	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_100208223.1\|2562484_2562586_+	DUF2648 domain-containing protein	NA	NA	NA	NA
WP_033080167.1\|2563704_2564127_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_033080168.1\|2564328_2565459_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_033080169.1\|2565808_2567302_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_000664727.1\|2571335_2571812_-	replication/maintenance protein RepL	NA	NA	NA	NA
WP_001003263.1\|2572259_2572994_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C)	E4ZFQ0	Streptococcus_phage	2.1e-61	50.4
WP_002497446.1\|2573054_2573114_-	23S rRNA methylase leader peptide ErmCL	NA	NA	NA	NA
WP_138109740.1\|2577669_2579265_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.2e-239	79.3

Anti-CRISPR protein detection

Acr_ID: NZ_CP035541.1|WP_117276929.1|1762722_1763055_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP035541.1|WP_117276929.1|1762722_1763055_-|hypothetical-protein

1762722_1763055_-

110 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|66	0.9727272727272728	1	0.8527131782945736

1739402-1808734

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP035541

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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