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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039168 Staphylococcus aureus strain R50 plasmid pR50, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039167 Staphylococcus aureus strain R50 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,WYL 6 2 12 0

Results visualization

1. NZ_CP039167
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_1 230452-230585 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_2 344435-344535 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_3 580458-580550 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_4 801969-802050 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_5 1679773-1679856 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_6 2154975-2155055 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_7 2167296-2167381 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_8 2263708-2263900 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039167_9 2414209-2414306 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP039167_8 8.2|2263786|36|NZ_CP039167|CRT 2263786-2263821 36 NZ_CP039167.1 1111134-1111169 0 1.0
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 230586-230617 1 0.969
NZ_CP039167_1 1.2|230530|33|NZ_CP039167|CRISPRCasFinder 230530-230562 33 NZ_CP039167.1 10423-10455 1 0.97
NZ_CP039167_1 1.2|230530|33|NZ_CP039167|CRISPRCasFinder 230530-230562 33 NZ_CP039167.1 1111189-1111221 1 0.97
NZ_CP039167_1 1.2|230530|33|NZ_CP039167|CRISPRCasFinder 230530-230562 33 NZ_CP039167.1 1195333-1195365 1 0.97
NZ_CP039167_1 1.2|230530|33|NZ_CP039167|CRISPRCasFinder 230530-230562 33 NZ_CP039167.1 1660067-1660099 1 0.97
NZ_CP039167_8 8.2|2263786|36|NZ_CP039167|CRT 2263786-2263821 36 NZ_CP039167.1 1825050-1825085 1 0.972
NZ_CP039167_8 8.3|2263845|33|NZ_CP039167|CRT 2263845-2263877 33 NZ_CP039167.1 2252928-2252960 1 0.97
NZ_CP039167_8 8.3|2263845|33|NZ_CP039167|CRT 2263845-2263877 33 NZ_CP039167.1 2538746-2538778 1 0.97
NZ_CP039167_8 8.3|2263845|33|NZ_CP039167|CRT 2263845-2263877 33 NZ_CP039167.1 1319681-1319713 1 0.97
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 1009908-1009938 1 0.968
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 1009966-1009996 1 0.968
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 1645404-1645434 1 0.968
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 2252926-2252956 1 0.968
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 2538744-2538774 1 0.968
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 305787-305817 1 0.968
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 1319685-1319715 1 0.968
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 743039-743070 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 743097-743128 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 743155-743186 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 802039-802070 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 1009853-1009884 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 1319623-1319654 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 1423002-1423033 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 1423060-1423091 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 1645465-1645496 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 1660010-1660041 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 1964073-1964104 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 2571822-2571853 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 2865813-2865844 2 0.938
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP039167.1 2865871-2865902 2 0.938
NZ_CP039167_1 1.2|230530|33|NZ_CP039167|CRISPRCasFinder 230530-230562 33 NZ_CP039167.1 2703369-2703401 2 0.939
NZ_CP039167_5 5.1|1679797|36|NZ_CP039167|CRISPRCasFinder 1679797-1679832 36 NZ_CP039167.1 1645403-1645438 2 0.944
NZ_CP039167_8 8.2|2263786|36|NZ_CP039167|CRT 2263786-2263821 36 NZ_CP039167.1 1645345-1645380 2 0.944
NZ_CP039167_8 8.3|2263845|33|NZ_CP039167|CRT 2263845-2263877 33 NZ_CP039167.1 165033-165065 2 0.939
NZ_CP039167_8 8.3|2263845|33|NZ_CP039167|CRT 2263845-2263877 33 NZ_CP039167.1 750305-750337 2 0.939
NZ_CP039167_8 8.3|2263845|33|NZ_CP039167|CRT 2263845-2263877 33 NZ_CP039167.1 750361-750393 2 0.939
NZ_CP039167_8 8.3|2263845|33|NZ_CP039167|CRT 2263845-2263877 33 NZ_CP039167.1 802308-802340 2 0.939
NZ_CP039167_8 8.3|2263845|33|NZ_CP039167|CRT 2263845-2263877 33 NZ_CP039167.1 1962730-1962762 2 0.939
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 165031-165061 2 0.935
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 750303-750333 2 0.935
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 750359-750389 2 0.935
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 802306-802336 2 0.935
NZ_CP039167_8 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder 2263843-2263873 31 NZ_CP039167.1 1962728-1962758 2 0.935

1. spacer 8.2|2263786|36|NZ_CP039167|CRT matches to position: 1111134-1111169, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

2. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 230586-230617, mismatch: 1, identity: 0.969

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggtaa	Protospacer
**.*****************************

3. spacer 1.2|230530|33|NZ_CP039167|CRISPRCasFinder matches to position: 10423-10455, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

4. spacer 1.2|230530|33|NZ_CP039167|CRISPRCasFinder matches to position: 1111189-1111221, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

5. spacer 1.2|230530|33|NZ_CP039167|CRISPRCasFinder matches to position: 1195333-1195365, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

6. spacer 1.2|230530|33|NZ_CP039167|CRISPRCasFinder matches to position: 1660067-1660099, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

7. spacer 8.2|2263786|36|NZ_CP039167|CRT matches to position: 1825050-1825085, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

8. spacer 8.3|2263845|33|NZ_CP039167|CRT matches to position: 2252928-2252960, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

9. spacer 8.3|2263845|33|NZ_CP039167|CRT matches to position: 2538746-2538778, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

10. spacer 8.3|2263845|33|NZ_CP039167|CRT matches to position: 1319681-1319713, mismatch: 1, identity: 0.97

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** **********************

11. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 1009908-1009938, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

12. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 1009966-1009996, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

13. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 1645404-1645434, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

14. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 2252926-2252956, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

15. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 2538744-2538774, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

16. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 305787-305817, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

17. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 1319685-1319715, mismatch: 1, identity: 0.968

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
************ ******************

18. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 743039-743070, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

19. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 743097-743128, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

20. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 743155-743186, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

21. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 802039-802070, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

22. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 1009853-1009884, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

23. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 1319623-1319654, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

24. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 1423002-1423033, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

25. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 1423060-1423091, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

26. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 1645465-1645496, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

27. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 1660010-1660041, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

28. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 1964073-1964104, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

29. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 2571822-2571853, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

30. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 2865813-2865844, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

31. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to position: 2865871-2865902, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

32. spacer 1.2|230530|33|NZ_CP039167|CRISPRCasFinder matches to position: 2703369-2703401, mismatch: 2, identity: 0.939

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcaggttacaataatg	Protospacer
*********************  **********

33. spacer 5.1|1679797|36|NZ_CP039167|CRISPRCasFinder matches to position: 1645403-1645438, mismatch: 2, identity: 0.944

gcacattattgaaagctgacttttggtcagcttcta	CRISPR spacer
gcacattattgtaagctgacttttcgtcagcttcta	Protospacer
*********** ************ ***********

34. spacer 8.2|2263786|36|NZ_CP039167|CRT matches to position: 1645345-1645380, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

35. spacer 8.3|2263845|33|NZ_CP039167|CRT matches to position: 165033-165065, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgccagcttctg	Protospacer
********** ************.*********

36. spacer 8.3|2263845|33|NZ_CP039167|CRT matches to position: 750305-750337, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgtcagcttctg	Protospacer
********** *********.************

37. spacer 8.3|2263845|33|NZ_CP039167|CRT matches to position: 750361-750393, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgtcagcttctg	Protospacer
********** *********.************

38. spacer 8.3|2263845|33|NZ_CP039167|CRT matches to position: 802308-802340, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgtcagcttctg	Protospacer
********** *********.************

39. spacer 8.3|2263845|33|NZ_CP039167|CRT matches to position: 1962730-1962762, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcagcttctg	CRISPR spacer
cattatcgtaagctgacttttcgtcagcttctg	Protospacer
******.*** **********************

40. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 165031-165061, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgccagct	Protospacer
************ ************.*****

41. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 750303-750333, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
************ *********.********

42. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 750359-750389, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
************ *********.********

43. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 802306-802336, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
************ *********.********

44. spacer 8.4|2263843|31|NZ_CP039167|CRISPRCasFinder matches to position: 1962728-1962758, mismatch: 2, identity: 0.935

cacattattgtatgctgacttttcgtcagct	CRISPR spacer
cacattatcgtaagctgacttttcgtcagct	Protospacer
********.*** ******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_KY270853 Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence 37339-37370 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_KX839207 Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence 106205-106236 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP021328 Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence 319442-319473 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP025467 Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence 229082-229113 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP019048 Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence 17455-17486 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NC_018107 Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence 206727-206758 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP022441 Klebsiella sp. LY plasmid unnamed3, complete sequence 191028-191059 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 KU318421 Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence 37881-37912 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NC_023911 Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence 256422-256453 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP025964 Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence 172857-172888 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP038277 Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence 221440-221471 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP024641 Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence 281239-281270 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 CP027603 UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence 71493-71524 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP046614 Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence 37800-37831 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP026014 Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence 118204-118235 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP026019 Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence 275327-275358 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_MF344561 Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence 38947-38978 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_MF344566 Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence 37553-37584 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_MF344562 Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence 40101-40132 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_MF344567 Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence 37881-37912 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_MF344563 Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence 37792-37823 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_MF344564 Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence 38947-38978 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP026369 Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence 83124-83155 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NZ_CP028952 Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence 436045-436076 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 MN661402 Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence 222862-222893 7 0.781
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 MK599315 Pseudomonas phage PA1C, complete genome 261289-261320 7 0.781
NZ_CP039167_7 7.1|2167322|34|NZ_CP039167|CRISPRCasFinder 2167322-2167355 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP039167_7 7.1|2167322|34|NZ_CP039167|CRISPRCasFinder 2167322-2167355 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 NC_010371 Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence 149144-149175 10 0.688
NZ_CP039167_1 1.1|230475|32|NZ_CP039167|CRISPRCasFinder 230475-230506 32 MN103543 Pseudomonas phage vB_PaeM_PS119XW, complete genome 261900-261931 10 0.688

1. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_KY270853 (Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

2. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_KX839207 (Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

3. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP021328 (Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

4. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP025467 (Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

5. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP019048 (Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

6. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NC_018107 (Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

7. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP022441 (Klebsiella sp. LY plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

8. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to KU318421 (Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

9. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NC_023911 (Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

10. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP025964 (Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

11. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP038277 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

12. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP024641 (Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

13. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to CP027603 (UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

14. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP046614 (Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

15. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP026014 (Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

16. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP026019 (Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

17. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_MF344561 (Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

18. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_MF344566 (Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

19. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_MF344562 (Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

20. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_MF344567 (Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

21. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_MF344563 (Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

22. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_MF344564 (Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

23. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP026369 (Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

24. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NZ_CP028952 (Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

25. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .  

26. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa--	CRISPR spacer
gaaacaattgcgaaaagaaattct--gagtaata	Protospacer
 *** **** **************  ..****  

27. spacer 7.1|2167322|34|NZ_CP039167|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

28. spacer 7.1|2167322|34|NZ_CP039167|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

29. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 10, identity: 0.688

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
gaaagaatttcaaaaagaaatactctttagca	Protospacer
 **********.********* ** .  .  *

30. spacer 1.1|230475|32|NZ_CP039167|CRISPRCasFinder matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 10, identity: 0.688

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
gaaacaattgcgaaaagaaattctgagcaata	Protospacer
 *** **** **************. . .  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 675117 : 682937 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 694909 : 708493 15 uncultured_Caudovirales_phage(55.56%) NA NA
DBSCAN-SWA_3 760071 : 777579 22 Staphylococcus_phage(73.68%) coat,terminase,integrase attL 762733:762748|attR 776656:776671
DBSCAN-SWA_4 810325 : 856427 70 Staphylococcus_phage(76.12%) tail,integrase,capsid,plate,portal,holin,head,terminase attL 812137:812153|attR 820973:820989
DBSCAN-SWA_5 1011476 : 1019949 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1477103 : 1560341 103 Staphylococcus_phage(83.12%) tail,integrase,capsid,holin,portal,protease,head,terminase,tRNA attL 1502914:1502929|attR 1564497:1564512
DBSCAN-SWA_7 1616966 : 1625278 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_8 1694962 : 1704005 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 1830169 : 1842904 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_10 1846063 : 1877726 36 Staphylococcus_phage(90.32%) protease NA
DBSCAN-SWA_11 2025736 : 2030655 6 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_12 2760573 : 2825883 50 Staphylococcus_phage(33.33%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage