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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039162 Staphylococcus aureus strain Lr12 chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 10 3 7 2
NZ_CP039163 Staphylococcus aureus strain Lr12 plasmid pLr12, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NZ_CP039162
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_1 340512-340613 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_2 718954-719032 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_3 724409-724678 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_4 731723-731802 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_5 767873-767954 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_6 1552695-1552779 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_7 1966605-1966686 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_8 2092306-2092386 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_9 2104627-2104712 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039162_10 2209243-2209323 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 677110-677131 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 767946-767967 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 1552771-1552792 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 1866388-1866409 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 102284-102305 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 102342-102363 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 225476-225497 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 553450-553471 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 1283136-1283157 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 1567305-1567326 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 677110-677131 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 767946-767967 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 1552771-1552792 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 1866388-1866409 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 102284-102305 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 102342-102363 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 225476-225497 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 553450-553471 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 1283136-1283157 0 1.0
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 1567305-1567326 0 1.0
NZ_CP039162_4 4.1|731747|32|NZ_CP039162|CRISPRCasFinder 731747-731778 32 NZ_CP039162.1 3655-3686 0 1.0
NZ_CP039162_4 4.1|731747|32|NZ_CP039162|CRISPRCasFinder 731747-731778 32 NZ_CP039162.1 768203-768234 0 1.0
NZ_CP039162_4 4.1|731747|32|NZ_CP039162|CRISPRCasFinder 731747-731778 32 NZ_CP039162.1 1567364-1567395 0 1.0
NZ_CP039162_4 4.1|731747|32|NZ_CP039162|CRISPRCasFinder 731747-731778 32 NZ_CP039162.1 1990682-1990713 0 1.0
NZ_CP039162_4 4.1|731747|32|NZ_CP039162|CRISPRCasFinder 731747-731778 32 NZ_CP039162.1 2377225-2377256 0 1.0
NZ_CP039162_7 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder 1966629-1966662 34 NZ_CP039162.1 718953-718986 0 1.0
NZ_CP039162_7 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder 1966629-1966662 34 NZ_CP039162.1 1072411-1072444 0 1.0
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 879440-879461 1 0.955
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 1587032-1587053 1 0.955
NZ_CP039162_3 3.1|724445|22|NZ_CP039162|CRT 724445-724466 22 NZ_CP039162.1 1587265-1587286 1 0.955
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 NZ_CP039162.1 102400-102422 1 0.957
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 NZ_CP039162.1 678282-678304 1 0.957
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 NZ_CP039162.1 1283252-1283274 1 0.957
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 NZ_CP039162.1 1866446-1866468 1 0.957
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 NZ_CP039162.1 2198414-2198436 1 0.957
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 879440-879461 1 0.955
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 1587032-1587053 1 0.955
NZ_CP039162_3 3.3|724562|22|NZ_CP039162|CRT 724562-724583 22 NZ_CP039162.1 1587265-1587286 1 0.955
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 NZ_CP039162.1 102400-102422 1 0.957
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 NZ_CP039162.1 678282-678304 1 0.957
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 NZ_CP039162.1 1283252-1283274 1 0.957
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 NZ_CP039162.1 1866446-1866468 1 0.957
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 NZ_CP039162.1 2198414-2198436 1 0.957
NZ_CP039162_4 4.1|731747|32|NZ_CP039162|CRISPRCasFinder 731747-731778 32 NZ_CP039162.1 1283310-1283341 1 0.969
NZ_CP039162_5 5.1|767897|34|NZ_CP039162|CRISPRCasFinder 767897-767930 34 NZ_CP039162.1 1283232-1283265 1 0.971
NZ_CP039162_6 6.1|1552721|33|NZ_CP039162|CRISPRCasFinder 1552721-1552753 33 NZ_CP039162.1 102381-102413 1 0.97
NZ_CP039162_6 6.1|1552721|33|NZ_CP039162|CRISPRCasFinder 1552721-1552753 33 NZ_CP039162.1 1283233-1283265 1 0.97
NZ_CP039162_7 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder 1966629-1966662 34 NZ_CP039162.1 1672704-1672737 1 0.971
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 731697-731727 1 0.968
NZ_CP039162_2 2.1|718978|31|NZ_CP039162|CRISPRCasFinder 718978-719008 31 NZ_CP039162.1 1587177-1587207 2 0.935
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 NZ_CP039162.1 1371570-1371592 2 0.913
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 NZ_CP039162.1 1966686-1966708 2 0.913
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 NZ_CP039162.1 1371570-1371592 2 0.913
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 NZ_CP039162.1 1966686-1966708 2 0.913
NZ_CP039162_4 4.1|731747|32|NZ_CP039162|CRISPRCasFinder 731747-731778 32 NZ_CP039162.1 1072708-1072739 2 0.938
NZ_CP039162_7 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder 1966629-1966662 34 NZ_CP039162.1 1287606-1287639 2 0.941
NZ_CP039162_7 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder 1966629-1966662 34 NZ_CP039162.1 2652864-2652897 2 0.941
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 3661-3691 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 768209-768239 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 975439-975469 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 1371623-1371653 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 2198467-2198497 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 2377231-2377261 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 301774-301804 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 553505-553535 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 1076821-1076851 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 1283191-1283221 2 0.935
NZ_CP039162_10 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder 2209268-2209298 31 NZ_CP039162.1 1567359-1567389 2 0.935

1. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 677110-677131, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 767946-767967, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 1552771-1552792, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 1866388-1866409, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 102284-102305, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 102342-102363, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 225476-225497, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 553450-553471, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 1283136-1283157, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 1567305-1567326, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 677110-677131, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 767946-767967, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 1552771-1552792, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 1866388-1866409, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 102284-102305, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 102342-102363, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 225476-225497, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 553450-553471, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 1283136-1283157, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 1567305-1567326, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 4.1|731747|32|NZ_CP039162|CRISPRCasFinder matches to position: 3655-3686, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

22. spacer 4.1|731747|32|NZ_CP039162|CRISPRCasFinder matches to position: 768203-768234, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

23. spacer 4.1|731747|32|NZ_CP039162|CRISPRCasFinder matches to position: 1567364-1567395, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

24. spacer 4.1|731747|32|NZ_CP039162|CRISPRCasFinder matches to position: 1990682-1990713, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

25. spacer 4.1|731747|32|NZ_CP039162|CRISPRCasFinder matches to position: 2377225-2377256, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

26. spacer 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder matches to position: 718953-718986, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

27. spacer 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder matches to position: 1072411-1072444, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

28. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 879440-879461, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

29. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 1587032-1587053, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

30. spacer 3.1|724445|22|NZ_CP039162|CRT matches to position: 1587265-1587286, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

31. spacer 3.2|724503|23|NZ_CP039162|CRT matches to position: 102400-102422, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

32. spacer 3.2|724503|23|NZ_CP039162|CRT matches to position: 678282-678304, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

33. spacer 3.2|724503|23|NZ_CP039162|CRT matches to position: 1283252-1283274, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

34. spacer 3.2|724503|23|NZ_CP039162|CRT matches to position: 1866446-1866468, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 3.2|724503|23|NZ_CP039162|CRT matches to position: 2198414-2198436, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 879440-879461, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

37. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 1587032-1587053, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

38. spacer 3.3|724562|22|NZ_CP039162|CRT matches to position: 1587265-1587286, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

39. spacer 3.4|724620|23|NZ_CP039162|CRT matches to position: 102400-102422, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

40. spacer 3.4|724620|23|NZ_CP039162|CRT matches to position: 678282-678304, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

41. spacer 3.4|724620|23|NZ_CP039162|CRT matches to position: 1283252-1283274, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

42. spacer 3.4|724620|23|NZ_CP039162|CRT matches to position: 1866446-1866468, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

43. spacer 3.4|724620|23|NZ_CP039162|CRT matches to position: 2198414-2198436, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

44. spacer 4.1|731747|32|NZ_CP039162|CRISPRCasFinder matches to position: 1283310-1283341, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

45. spacer 5.1|767897|34|NZ_CP039162|CRISPRCasFinder matches to position: 1283232-1283265, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

46. spacer 6.1|1552721|33|NZ_CP039162|CRISPRCasFinder matches to position: 102381-102413, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

47. spacer 6.1|1552721|33|NZ_CP039162|CRISPRCasFinder matches to position: 1283233-1283265, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

48. spacer 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder matches to position: 1672704-1672737, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

49. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 731697-731727, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

50. spacer 2.1|718978|31|NZ_CP039162|CRISPRCasFinder matches to position: 1587177-1587207, mismatch: 2, identity: 0.935

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** .******

51. spacer 3.2|724503|23|NZ_CP039162|CRT matches to position: 1371570-1371592, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

52. spacer 3.2|724503|23|NZ_CP039162|CRT matches to position: 1966686-1966708, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

53. spacer 3.4|724620|23|NZ_CP039162|CRT matches to position: 1371570-1371592, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

54. spacer 3.4|724620|23|NZ_CP039162|CRT matches to position: 1966686-1966708, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

55. spacer 4.1|731747|32|NZ_CP039162|CRISPRCasFinder matches to position: 1072708-1072739, mismatch: 2, identity: 0.938

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacatttttgtaagctgactttgcgc	Protospacer
************ *************** ***

56. spacer 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder matches to position: 1287606-1287639, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

57. spacer 7.1|1966629|34|NZ_CP039162|CRISPRCasFinder matches to position: 2652864-2652897, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

58. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 3661-3691, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

59. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 768209-768239, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

60. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 975439-975469, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

61. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 1371623-1371653, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

62. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 2198467-2198497, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 2377231-2377261, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

64. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 301774-301804, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

65. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 553505-553535, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

66. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 1076821-1076851, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

67. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 1283191-1283221, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

68. spacer 10.1|2209268|31|NZ_CP039162|CRISPRCasFinder matches to position: 1567359-1567389, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP039162_3 3.2|724503|23|NZ_CP039162|CRT 724503-724525 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP039162_3 3.4|724620|23|NZ_CP039162|CRT 724620-724642 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP039162_9 9.1|2104653|34|NZ_CP039162|CRISPRCasFinder 2104653-2104686 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP039162_9 9.1|2104653|34|NZ_CP039162|CRISPRCasFinder 2104653-2104686 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 3.2|724503|23|NZ_CP039162|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 3.2|724503|23|NZ_CP039162|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 3.4|724620|23|NZ_CP039162|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 3.4|724620|23|NZ_CP039162|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 9.1|2104653|34|NZ_CP039162|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 9.1|2104653|34|NZ_CP039162|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 656188 : 664009 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 675980 : 690565 17 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 776284 : 821970 69 Staphylococcus_phage(61.19%) terminase,holin,integrase,capsid,plate,head,portal,tail attL 771591:771606|attR 828792:828807
DBSCAN-SWA_4 976949 : 985404 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1602364 : 1611395 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 1725421 : 1794583 66 Staphylococcus_phage(95.56%) protease,tRNA NA
DBSCAN-SWA_7 1890419 : 1971569 108 Staphylococcus_phage(88.16%) terminase,holin,integrase,capsid,head,tail,protease,portal attL 1960188:1960204|attR 1977886:1977902
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP039162.1|WP_000681968.1|1915044_1915221_-|hypothetical-protein 1915044_1915221_- 58 aa aa NA NA NA 1890419-1971569 yes
NZ_CP039162.1|WP_000990056.1|1915463_1915562_-|hypothetical-protein 1915463_1915562_- 32 aa aa NA NA NA 1890419-1971569 yes