CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040461	Enterococcus sp. M190262 chromosome, complete genome	2 crisprs	csa3,cas3,WYL,cas14j,DEDDh,DinG	0	0	4	0
NZ_CP040462	Enterococcus sp. M190262 plasmid pM190262, complete sequence	1 crisprs	NA	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040461_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040461_1

631682-631774

Orphan

Consensus_repeat	Method
GCAAGCCAATCGCAGTGTTTCAAAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040461_1

>merge|NZ_CP040461|1|631682-631774|CRISPRCasFinder
GCAAGCCAATCGCAGTGTTTCAAAGCACCGAGTAGGTACTTTTCTACATCTGCTCTGCCTTGCTTTGCAAGCCAATCGCAGTGTTTCAAAGCA

>NZ_CP040461|1|1|631682-631774|CRISPRCasFinder
GCAAGCCAATCGCAGTGTTTCAAAGCA	CCGAGTAGGTACTTTTCTACATCTGCTCTGCCTTGCTTT
GCAAGCCAATCGCAGTGTTTCAAAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040461.1\|WP_138371291.1\|623716_626998_-\|cellobiose-phosphorylase	unknown	unknown	gnl\|CDD\|225990
NZ_CP040461.1\|WP_138371296.1\|638774_640907_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|223400
NZ_CP040461.1\|WP_138371292.1\|629178_629946_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197317
NZ_CP040461.1\|WP_138371288.1\|615345_616143_-\|WxL-domain-containing-protein	unknown	unknown	gnl\|CDD\|372694
NZ_CP040461.1\|WP_060813241.1\|616157_616871_-\|WxL-domain-containing-protein	unknown	unknown	gnl\|CDD\|372694
NZ_CP040461.1\|WP_138371295.1\|634341_635253_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_CP040461.1\|WP_003128097.1\|635603_636614_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP040461.1\|WP_096710885.1\|638211_638778_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|376812
NZ_CP040461.1\|WP_138371289.1\|616830_617169_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	unknown
NZ_CP040461.1\|WP_029486280.1\|627014_629165_-\|beta-glucosidase	unknown	unknown	gnl\|CDD\|185053
NZ_CP040461.1\|WP_060813249.1\|630860_631469_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040461.1\|WP_113849110.1\|637816_638215_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP040461.1\|WP_003128108.1\|622738_623704_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP040461.1\|WP_138371290.1\|617186_622115_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372694
NZ_CP040461.1\|WP_138371294.1\|631830_633432_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270298
NZ_CP040461.1\|WP_005470078.1\|629950_630874_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|368448
NZ_CP040461.1\|WP_003128096.1\|636626_637217_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP040461.1\|WP_060813256.1\|640922_643469_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP040461.1\|WP_021150594.1\|633446_634328_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP040461.1\|WP_060813252.1\|637311_637746_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692

Protein	Function_ID	Function_description	E-value
NZ_CP040461.1\|WP_096710885.1\|638211_638778_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|376812	pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.	4.16253e-82
NZ_CP040461.1\|WP_138371296.1\|638774_640907_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|223400	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair].	0
NZ_CP040461.1\|WP_138371292.1\|629178_629946_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	3.51114e-83
NZ_CP040461.1\|WP_138371288.1\|615345_616143_-\|WxL-domain-containing-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	3.73476e-64
NZ_CP040461.1\|WP_060813241.1\|616157_616871_-\|WxL-domain-containing-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	7.75912e-66
NZ_CP040461.1\|WP_138371295.1\|634341_635253_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	2.85291e-100
NZ_CP040461.1\|WP_003128097.1\|635603_636614_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP040461.1\|WP_029486280.1\|627014_629165_-\|beta-glucosidase	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	0
NZ_CP040461.1\|WP_138371291.1\|623716_626998_-\|cellobiose-phosphorylase	gnl\|CDD\|225990	COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism].	0
NZ_CP040461.1\|WP_113849110.1\|637816_638215_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.952e-23
NZ_CP040461.1\|WP_003128108.1\|622738_623704_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.11606e-90
NZ_CP040461.1\|WP_138371290.1\|617186_622115_-\|hypothetical-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	0.00119751
NZ_CP040461.1\|WP_138371294.1\|631830_633432_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270298	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	5.60279e-32
NZ_CP040461.1\|WP_005470078.1\|629950_630874_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|368448	pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyze the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.	2.99098e-57
NZ_CP040461.1\|WP_003128096.1\|636626_637217_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	7.34522e-85
NZ_CP040461.1\|WP_060813256.1\|640922_643469_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP040461.1\|WP_021150594.1\|633446_634328_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.78222e-63
NZ_CP040461.1\|WP_060813252.1\|637311_637746_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.434e-91

>NZ_CP040461.1|WP_060813249.1|630860_631469_-|hypothetical-protein
MKQIFSYEGWYYRVFSFAADMILLSFLFLVPAVTIVLTGPALIALYQTIDQLYQEKDVPVWQRYSRAFLANIKRGIVLEGIIVGYVAVTAAIIYGLMGITTYLGVLAVILSSLAGLFLTVFVLLFCLFSSTVKQTAHETAYAVLSSTANAIILLVIPVFVFLLLNKINFFLFVCLGISGFAYLQVLFFHKVWAKEGDVNEIN
>NZ_CP040461.1|WP_005470078.1|629950_630874_-|prolyl-oligopeptidase-family-serine-peptidase
MKSIRNEPSQEEIDRFWRQVKQEIKQIPLAFERKQQPALLTGIDVYQVNFQSLYNETIYGYLLVPKNKSQLPIVIDYLGYMNHLQEPFQFAHWALIDCACLVIDNRGQGGRTKDTHPYETTQHEAPFGRGILKKEDFYMKRMIADSLRLLEVAAELPEIDSERVILRGGSQGGGIALIVNALAETPIFATFADVPSHSNISHRIESRTGSYHVMQEYIDTFPDSKETIYYQMAYYDLKNLAAKITGPVFASVGSQDPICPMTDFFVSYHRISTPKQLTVYLNKGHGGGEAKQIRKEMQQIQKLLKRI
>NZ_CP040461.1|WP_138371292.1|629178_629946_-|endonuclease/exonuclease/phosphatase-family-protein
MKVATYNLRVDTDYDKEWQWSYRADKVLALIDYHDWDILCVQEVRPTQVADLARLTDYESVTAERDGDGTGEGIGIYYKQTMFSKVDSGSFWLSLTPDVPSIHPEAEYLRLCLWTVLRDRKGHDFLVIDTHLDNISEIARFEGMKVILERLADKIATLPVLLMGDLNAEAVERVHESLQTIFVNAKEQNEKRHYGPRGSYQNFDYQLPWNQLEEIDYIYTKGFRIIKTGCLTDSCDGRFPSDHFPLEADLRFDER
>NZ_CP040461.1|WP_029486280.1|627014_629165_-|beta-glucosidase
MEKTKLTHLLEQMTIDEKIDQLLQLAAAFYSDKAEEKTGPMSDLGLTQETINNAGTTLGVSGAKEAIRVQQEYIKNNRLQIPTILMADIIHGFRTIFPIPLALGSSWDLNAAEQMAEISAREAAVSGLHVTFSPMVDLVRDPRWGRVMESTGEDPYLNSRLAEAFVKGYQGEDLTNDFERVAACVKHFAAYGAAIGGRDYNTVNMSERQLRESYLPGYQAALAAGAKLVMTSFNTVDGIPATANRWLFRDVLRKEFGFDGVVISDWGAVKEIIAHGAAEDEKQAAELAIKAGVDIEMMTTCYNDYLKELIEEGAVAEELLDEAVLRILTLKNDLGLFENPHRGADEAAEARVVLSQEHRTAAREIAQKSMVLLKNENILPFKSTETVAIIGPAAHSKDILGAWSWQGKQEEAVSLIEGSKAVSENILYGKEPFDYFAPTEAAINEAVTLAKQADKVVLALGEQDWMSGEAASRSDIRLPEAQLALFKQLQAVNEQLVVTLYNGRPLDLQGIDEAKAIVEAWFPGTEGGHALANLLWGQYNPSGRLSMSFPETVGQVPVYYNTETTGRPYESAPDEKYVSKYLDVSNYAKYPFGFGLSYHEAQYSELSLDKSQLSAEETLTVSLQIKNNSDFAGEETVQLYLRDLVGEVVRPIKELKGFQKVWLEPGETKEVTFSITEDMLRYVHSNQETSSDAGTFQAMVGSNSRDLQMATFKFVR
>NZ_CP040461.1|WP_138371291.1|623716_626998_-|cellobiose-phosphorylase
MTQYITLEKNQTRLRFLKTGDLYEIDSNGMMINQLNGNPLDGSLNQLYLRVYTSEGIRWTPMVGSNSASKFGYSRQQLSWSGEFLDVHYQVDLQLAEDCWFWRIQLTGSGKADIIYGQDIGNALKGAVQSNEAYVSQYLDHHVTQDNGTIVVSSRQNQPQSGKFPLVEQGSFQPLRSYSTDGYQFFGRTYKVTNLPQALAHETLANEVYQYEFAYIALQSESYQLSDETTEVIFYSAVKADQPQAVSGPQFDRPSLKEQFQKLTFESLTTQLLPAKQLGAALTGETLSEADISALFPKQEAMERIDGQMYSFFTENYRHVVLKEKESAMERAHGHILLSGSDLVVDQPLLSTTVYMYGIFNSQIVLGNTSMNKLLSNSRNALNVMKRSGQRIYLKEQDMWRLLTMPSAFEMGLNSATWYYKTADDLITVTTYTLLDSREIRTTIHSKKAYSWAISNQFLMGPDEEAPTAVVKKEQQVVITSGTTSPVKEAYPELTYYLQADQPFDVTDDSLFLQENSDGALTVLTFADQSEVTLKIQGTLTGDPYREQESSKQQEEAKYVTFIDSLLNQFELTHEQAEVQTLNLLSRWYTHNMLVHYLSPHGLEQYGGAAWGTRDVSQGPTEFFLAVNRPEIVASIIKHLFANQFADDGNWPQWFMFDRYEKQKADESHGDVIVWPMKVVSDYLEKTKDFAILETQIPYTDRETFLKTSQTASLYDHLQKEIAYIEANFLEGTYLSCYGDGDWDDTLQPNNSKLKKQMASSWTVALTYEVMKKLAAQLKDYDPNYADHLQTIVSGIRTDFDKYILSSGTIPGFVYMEDPEHVELMIHPEDKKTGIQYRLLPMQQSMIGELLSPDEAEHHLGIIKEHLQHPDGVRLMNRPAAYHGGVSTNFKRAEQAANFGREIGLQYVHAHIRFTEAMAKLGQKEETWHALGVINPIQLQERVPNAELRQANVYFSSSDGDFKTRLEAQENFGKLRDGSVGVKGGWRVYSSGPGIYLNQLISNVLGIREMADDLFLDPVLPTELSDLTMTYRVFDQPVKIHFHEASKEQVLINGQPVDYTLAKNSYRKGAFCLDKSAVLPLFNKEINHIDIYR
>NZ_CP040461.1|WP_003128108.1|622738_623704_-|LacI-family-transcriptional-regulator
MVGIKDIAKKAGVSISTVSYALNGSPKVTEETRARIQAIARDLNYVPNMAARTLKRRQTNIIGVYLADYAGSFYGELLDGIKKSLETFGYEMIVCSGKKSHLFIPERMIDGAIILDWTFPSEEIERYAQRGHQIVVLDRILDHENIHQVLLDNKGGAALAIDKLISGGSQHVFLLAGPEKSYDSQERLEASIKELTRFGISYDVIAGDFTEPSGYRGAEEILAKNPLRPIDIFALNDEMAIGVYKYVRKTDLKIGEDIRIIGFDNTELGAFIQPRLSTISYSKHRWGMIASEKIVKSIQGEQVEDEHIYTTFIDGRSFPNN
>NZ_CP040461.1|WP_138371290.1|617186_622115_-|hypothetical-protein
MNRFLTNFLVFLLVSSPCFSYTEVVAHAESIAQKSETTDALNELEKLSDIDNKESNTSNKESSSESSEGTASQDNETNETSEATETAESDESPPHSASESHSQESVTSSSQESEKLTITFKSAEGRLLETGETSLQISKKKGERLTATDIPSFKNPASFEGWQLEGKIYSNEALQNVDLDHDQILQAVFKQGVSVRSSGSLVDLSIKDIIASADPSRLVAVPSPAGDGETYAEYANSVDGFRQALFDMYQNGNGGEFALYVGSGGTLTLPADLTAKTIPSTVDSSNITFYALQGKVSRLILTGHANDPITDATTLASGSRRVDFSTNNYFGSDIVFRNIDYRGSTIYMNGHSLFLNGGAVGNGFTIYGGTNSGDLEGNPTIHVNNTGSGTWNIYGGNQSGGTLKGNVTINVNNTVSGISTIAGGANVGTIDGNTKVAIKQLNGTLTNYYGGGVGSSATNAANVTGNVETTIATENANFRLGTFVGGVQYGTIDGRINSTVSGSGGWTGTANRFIGGSYYGNIGSEPAKDAIVTNLDSSLYSTGRATFEGGNRYSGTINGNIVNTVKAGPSASVGGIGDFNGGGGNNVSTLSQSSMGASNTTTYDNYTPAQRAQLAEAGASFKVYGNITSHLVSGSFSNGATYTTAAGRGGYIDGNTTIEVGSITADGSPGGDGIAYKGSKPTNLAYSTTTKNRGELSGWDIVGGGGYPGTAWDIYIKGNTKTILNNTVARWTYGGSFSGVIEGNASNTLNSGIVDTLEGTGYTGRRVYGNGETTVNNGQVDWFLSGGGWDDLLIGGDVAVTVYDGVINASMGASYGVASSHTINGNSNNRIFGGNFSGTPRTGSNGFSGGVTNNGRLLGNASLTLDLRNYDGEFKLPSGTNISGGNPFNSTNIVGTDTSNTITLNIYTKPGSDVLNGATIYGDGGRTASNTRSGKIMMNIQAEDSSIGNLYTTYYSNISSNQILRDVEMRIQGAKSINGISGGNATDNFTNAIVANSTNQVKMNFGENVDGTNAYQDEPISMTGLGLVNFTELTVTNGLTLMATGGDIKNGRSATAANHSTTYHQFGTIQLSKNAGIGISSANNMISGSKLTIEDEATIESPPGTGRINLSDFEVPDSKKDHLTWIKNTENDAAARVKSQGTWFGEVTSYQVLTINPVANNATPITPITFSGIEKATGKTFIGDNDVTGVNGYGIAIPGSVIDYEVEMPGIADGQGSITHDVTDVKENNAPLVIQAWGTDIAGIQVQKGRLLIPYTGSNLPTLTFTPETQNTGSWFYAGQIQSSKVTSATETIPEQSSSDPVDWQIPDGEYSYQVKVSYSNQAELRAQNAIITEQEAENLTKEDALDYLQAQGRPFFTDSLTEEAIAEIQKPLGSATSRKHLVSFKAGAANQSSVEQAVNLVVVKNESALASNRQFAVFAKDSRLTLGEATAITNQADLAAYTEAAMIFADGRDEQLPQVAPEALESIQQTSEEELLKNVTTTYHFTENGQTAEKTVNVAIAGELTLSSVPTTIDFGAQKITTTTQTYWPDIQGDLIVKDTRGSERSPWRLTVKEQQSLSNGTDHLENTLFFVKNGEEQLLTNGEIIVEETELTENGDYHVNQDWGETANKGLKLVVPVEKQKIGEYSGTLSWQLVSAPGNP
>NZ_CP040461.1|WP_138371289.1|616830_617169_-|LPXTG-cell-wall-anchor-domain-containing-protein
MKKIIIGSMLGWLFLFSATTLAAEIGAYDSNGVTSFYGVYEYPAENPEPPVKVPGNQQFDHRGNQILPATGSDYYSTMQLTGGACLLAALVILSKRSIRNEKDFINSGYRPH
>NZ_CP040461.1|WP_060813241.1|616157_616871_-|WxL-domain-containing-protein
MKKILLTAGIVLISSAFLQTTAVAAEYTSNGAITFEADNDPTKPVDPTDPEKPVDPVDPTDPDGPNLGTAGPLSIDFASSFQFGNQKITSETMDYYAKLQEFTSGSAGPNYVQVTDKRGTQEGWSLSVIQNGQFKTAQNEVLEGASLSISYGTAISVTDMHYAPTVVENHTFVPDSEMNLVNAPVGKGMGTWIYRFGADASEGAKAVKLNVPGRSVKLAKEYRTTLTWNLKNVPGTE
>NZ_CP040461.1|WP_138371288.1|615345_616143_-|WxL-domain-containing-protein
MKKRAFVGVGIALGITVGAVNVSAAETAAYRSNGAVDFIPNTDPTNPVNPENPDPEKPVNPVDPTDPDGPNPGTNGPLSIDYASSLDFGVNKISNKNETYYARAQTYLNDDGTAAMLKTANYVQVTDNRGNNAGWRLTVKQNGQFKNENTLNQELTGSVIKLTEPAVKSNALGVTAPVPTETITLDASGSEAIVMTAAAQSGAGTWVNAWGAVETVRENDSNGQEVESAITKAISLTVPGNTPKDAVSYETTLTWTLSDTPGNEV
>NZ_CP040461.1|WP_138371294.1|631830_633432_-|sugar-ABC-transporter-substrate-binding-protein
MKKVLGSLLAATALLSLAACGGSSDDASSSDFSIKDRYELDEKTPAWKLDTKKEPTKITWYINSDWTALPFGEDVTTAQIKKDLNIDIEFISGDDSKLNALISSGDMPDIVTLMDKTSQAATKADSWAYSLNDLAKKYDPYLLDVVTEDTFNWFALDDGKTYGYPNYSNTAADYESGNIPVNDNFVIREDVYEALGKPDISKPENFVKVMDQIKEKYPDLTPMGFTTVGDTAGPFLDKLQDFLGVPLEDESGNYYDRNLDEEYINWLKTFNKVYREGNISDDSFTDDGPTYDEKVKQGKYATMLVAGTSGQGGNFTEFMKNSDTRYIAIDGPASTSGRKPTLNQTGISGWLINYITKDAVDPAKVTQLFTYLIDEPGQILTKFGVEGVTYEYNDEGKIDYLPEVKEMEKTDNEGYNKKYGISRFNYFNNDRVNALKVETESALTQMQEWGEGKLYPHFVIENTDPDAGTAEARSNNSIKTKLNSTVISLIRSKDEKTFDSTLSDFESFLDSNNWDAIKEVKSEKMAENREKLK
>NZ_CP040461.1|WP_021150594.1|633446_634328_-|carbohydrate-ABC-transporter-permease
MIKRRTQENKWFYFFNTVILVLFSLLIIIPIWNILVSSVSSSSGLAENGLVLWPRGFTWENYRKVFSDDSIPRAFLISVLKTLIGAVTHTLFCAVVAYGLSKSRLIGRNIYTTLGVITMYFGGGMIPTYLLIKSLGLLDSFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASEFQIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQSNLSTMTESGSTDFVVQATTRGVQLATIVITTVPILIIYPLLQKHFIGGMMAGAVKE
>NZ_CP040461.1|WP_138371295.1|634341_635253_-|sugar-ABC-transporter-permease
MSKLKEIYRQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTVIDTISSAPWVGLENFRIILHDSFFWEAVGNTLAISMMKLGLGFAIPIILAIMIFEMRDGKLKKFIQTVSYIPHFFSWIVLGGMMISWLSTNGFINQVPMSLGMMDKGVNHLLDPDRYWWIAVLSDLWKEVGWGTILYLAGMSRIDPTFYEAARIDGATKLTQIRTITLPLLTPIISLNLILNVSGILGSNLDQTLVLMNSQNQNKSEVINSFVYKMGLTQGDFSYATAVGLGIAIISVILLVITDRVTRKLNNGNSVIL
>NZ_CP040461.1|WP_003128097.1|635603_636614_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MTDERIVSPETNETEELIEKSLRPQFLAQYIGQNKVKEELSIYIQAAKNREEALDHVLLYGPPGLGKTTMAMVIANEMAVNIKTTSGPAIEKPGDLIAILNELQPGDVLFIDEIHRLPRVAEEMLYSAMEDFFVDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISHMEYYEDQDLKEIVLRSADIFQTEIVEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQANGIIDRQIADKALLLLQVDHAGLDYVDQKLIRTMIELYGGGPVGLSTLSVNIGEETETVEDMYEPYLIQRGFLKRTPRGRIATTLAYTHFGYENHFEEL
>NZ_CP040461.1|WP_003128096.1|636626_637217_-|Holliday-junction-branch-migration-protein-RuvA
MYEYIIGKVTDIFPAYIVVETHGIGYQVAFGNPYAFSGKLNQEVKIYLHQVIREDAHSLYGFSTLEGKQLFLKLISVSGIGPKSALAIMANEDHAGLITAVENGDVTYLTKFPGVGKKTAQQMILDLKGKVAELVGEEPTAPVTVANTALDEAMAALKALGYSEKEIKKAEKYLAPNTTKSTDEYLREALKLMMKK
>NZ_CP040461.1|WP_060813252.1|637311_637746_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSESKEDLKAKLSPIEYAVTQENATERPFTGTYDDFYEKGIYVDIVSGEPLFASTDKYDAGCGWPSFSKPIDRKEIKEKADFSHGMHRVEVRSKEADSHLGHVFSDGPQDKGGLRYCINSAALRFVPLEEMVEQGYGEYTSLVE
>NZ_CP040461.1|WP_113849110.1|637816_638215_-|GFA-family-protein
MNLSGRCLCGQVTIELTEVHPQVTACHCSMCQKFHGGPFLALAACSRDQITFTGESLIQRYNSSNWAQRGFCRQCGSSLFYYAQETAEFFFATGLFQELTEAVFTEEIYTKDQPLFYHFAERTRRWPELPSS
>NZ_CP040461.1|WP_096710885.1|638211_638778_-|septum-formation-inhibitor-Maf
MIVLASQSPRRKELLAELVPSFQIQPADIDESVVFGEAPEEYVQRMAREKAAAVTACFPTDLVIASDTTVVVGQEIFGKPVDEADARRMLQKMSGKTHWVHTAVVLQKQEKRREKLVSAQVSFSLLTEQMITEYLKTGEYQDKAGGYGIQGAAKVFVEAIQGDFYTIVGFPVNTVAKLLKEFPEELEK
>NZ_CP040461.1|WP_138371296.1|638774_640907_-|DNA-mismatch-repair-endonuclease-MutL
MGKIQELSERLANQIAAGEVVERPASVVKELVENAVDAGSTQIDIFIEEAGLRKIQVIDNGEGIAEEDVVTAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSILTIETAVKDASQGSFLRLKGGTVEEHIPANLRQGTKITVENLFYNTPARLKYVKTLQTELANIGDIVNRIALSHPEVAFRLVHEGNKMLTTTGSGDLKQTIAGIYGVETAKKMLAINSEDLDFKLTGYVSLPEVTRASRNYLSTIINGRYIRNFALNKAIVAGYGSKLMVGRFPIAVLEITMDPLLVDVNVHPTKQEVRLSKEEELTKLISKSINDSLREENLIPNAADNLRFKKKVTTEPVEQTKLDLGTSPTTSSGLTFNRETGKFQVASSGYQQTVDNFVENPVEEGGKLPESAEQREKAPESSAYSVENQAVFDSLEETLPNKTLRDPFAATVPVTEIVQEVDQPAASVLEDASQQDLSLIEEQAQERLHPELHAGQKNYTKYVDRLLEETPAKQRFPHLEYFGQMHGTYLFAQSDEGLYIVDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVLDYPNNDAIKLKEQTEKLQEVGIHLEEFGANSFIVRAHPTWYPAGEEESIIREMIDMLLETGSVSVKKFREATAIMMSCKRSIKANHYLNEAQARILLADLAKCENPFNCPHGRPVLIHFTNSDMERMFKRIQDPHRARSGME
>NZ_CP040461.1|WP_060813256.1|640922_643469_-|DNA-mismatch-repair-protein-MutS
MPQKTKNTPMMEQYLSIKAQYQDAFLFYRLGDFYELFNEDAIKAAQILELTLTSRNKNAEEPIPMCGVPYHAASNYIDTLIEQGYKVAICEQVEDPKTTKGMVKREVVQLITPGTVMDSKGLSAKDNNFLTAVMKTTQGYSFAYADLSTGELKTALLEDEDAVLNEAAALQTKEVVLCSEVPDSLKELLTTRLSVVFSKQETYEENAEFRFLTSGLPEDEKTVTGKLLSYLAITQKRSLAHIQQAVEYQPDHSLKMDYYSKFNLELSRSIRTGKKHGTLLWLLDETKTAMGARLLKQWLDRPLIQPKKIFARQEMVQSLLDSFFERADLQDALTKVYDMERLVGRVAFGNVNGRDLLQLKSSLQQVPLIAQLIKGINRGEWNDLLIELEPLDELVALIDSAIDEDAPLQITEGNVIKDGFHEQLDKYREAMRNGKQWLAELEAKERQETGIKNLKVGFNRVFGYYIEITKANLAGLEEGRYERKQTLANAERFISPELKKLETVILEAEEKSVDLEYQLFLEVREEVKKSILRLQKLAKAISAVDVLQSFATIAERYQYVRPVLKKERSLNIIDGRHPVVEKVLGHQEYIPNSIVMHEDTDILLITGPNMSGKSTYMRQLALLVIMAQIGCFVPAQSAEMPIFDRIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHKEVKAKTLFSTHYHELTILDEELLRLRNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSGLLQRAATILKALEEHEPTIEKPVIEETQQLSLFSEVSTEEVGVIDQLKKLNLLEMTPMDALNKLYELQKRI

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Crispr_ID: NZ_CP040461_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040461_2

2211692-2211795

Orphan

Consensus_repeat	Method
TGAGCAACGGCGAGCCAAACGAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040461_2

>merge|NZ_CP040461|2|2211692-2211795|CRISPRCasFinder
TGAGCAACGGCGAGCCAAACGAGCGTGACCTTGAAAAGAATCACAAAGACTGGCACACGAAGAGTGACAGAGCAGATGATGAGCAACGGCGAGCCAAGCGAGCG

>NZ_CP040461|2|2|2211692-2211795|CRISPRCasFinder
TGAGCAACGGCGAGCCAAACGAGCG	TGACCTTGAAAAGAATCACAAAGACTGGCACACGAAGAGTGACAGAGCAGATGA
TGAGCAACGGCGAGCCAAGCGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040461.1\|WP_103299913.1\|2219627_2221073_+\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|181973
NZ_CP040461.1\|WP_003126959.1\|2209417_2209912_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP040461.1\|WP_029486972.1\|2203608_2205645_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP040461.1\|WP_003126967.1\|2214165_2214387_+\|YozE-family-protein	unknown	unknown	gnl\|CDD\|184229
NZ_CP040461.1\|WP_003126966.1\|2213651_2214173_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|237597
NZ_CP040461.1\|WP_138371742.1\|2216901_2217738_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP040461.1\|WP_138371739.1\|2212063_2213014_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|239947
NZ_CP040461.1\|WP_003126957.1\|2207685_2208633_+\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|213790
NZ_CP040461.1\|WP_138371743.1\|2217739_2219593_+\|PTS-beta-glucoside-transporter-subunit-IIBCA	unknown	unknown	gnl\|CDD\|273919
NZ_CP040461.1\|WP_113849906.1\|2209975_2210629_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NZ_CP040461.1\|WP_034704768.1\|2210755_2211598_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP040461.1\|WP_081131318.1\|2200897_2203018_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP040461.1\|WP_138371738.1\|2208661_2209414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040461.1\|WP_003126974.1\|2222041_2222911_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_CP040461.1\|WP_138371740.1\|2214462_2215884_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP040461.1\|WP_138371741.1\|2215910_2216459_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP040461.1\|WP_138371736.1\|2199501_2200599_+\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|181811
NZ_CP040461.1\|WP_003126954.1\|2203323_2203605_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040461.1\|WP_138371737.1\|2205766_2207671_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP040461.1\|WP_005472266.1\|2213013_2213652_+\|YpmS-family-protein	unknown	unknown	gnl\|CDD\|378302

Protein	Function_ID	Function_description	E-value
NZ_CP040461.1\|WP_103299913.1\|2219627_2221073_+\|family-1-glycosylhydrolase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP040461.1\|WP_003126959.1\|2209417_2209912_+\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	1.02532e-73
NZ_CP040461.1\|WP_029486972.1\|2203608_2205645_+\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.56665e-85
NZ_CP040461.1\|WP_003126967.1\|2214165_2214387_+\|YozE-family-protein	gnl\|CDD\|184229	PRK13672, PRK13672, hypothetical protein; Provisional.	3.60788e-30
NZ_CP040461.1\|WP_003126966.1\|2213651_2214173_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	1.27653e-87
NZ_CP040461.1\|WP_138371742.1\|2216901_2217738_+\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	5.44237e-49
NZ_CP040461.1\|WP_138371739.1\|2212063_2213014_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|239947	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.	1.77722e-80
NZ_CP040461.1\|WP_003126957.1\|2207685_2208633_+\|thymidylate-synthase	gnl\|CDD\|213790	TIGR03284, thym_sym, thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NZ_CP040461.1\|WP_138371743.1\|2217739_2219593_+\|PTS-beta-glucoside-transporter-subunit-IIBCA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP040461.1\|WP_113849906.1\|2209975_2210629_-\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	2.24654e-54
NZ_CP040461.1\|WP_034704768.1\|2210755_2211598_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.62829e-115
NZ_CP040461.1\|WP_081131318.1\|2200897_2203018_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	5.33859e-111
NZ_CP040461.1\|WP_003126974.1\|2222041_2222911_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	1.82331e-151
NZ_CP040461.1\|WP_138371740.1\|2214462_2215884_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	4.15147e-106
NZ_CP040461.1\|WP_138371741.1\|2215910_2216459_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	6.38696e-44
NZ_CP040461.1\|WP_138371736.1\|2199501_2200599_+\|LytR-family-transcriptional-regulator	gnl\|CDD\|181811	PRK09379, PRK09379, LytR family transcriptional regulator.	7.10319e-111
NZ_CP040461.1\|WP_138371737.1\|2205766_2207671_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP040461.1\|WP_005472266.1\|2213013_2213652_+\|YpmS-family-protein	gnl\|CDD\|378302	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140). This domain, found in various hypothetical prokaryotic proteins, has no known function.	5.25331e-78

>NZ_CP040461.1|WP_034704768.1|2210755_2211598_+|DegV-family-protein
MAKLKVVTDSSCTMEPTVRDQLNIHVVPLSVMIDGMVYPDDDSLPGERFMQMMAQAKELPKTSQPPIGHFVELFDELGKDGSDVLSIHMTKGLSGTVEAARQASNLSKANVTVIDSDTTDQALSFQVIRAAQLAQEGKTLAEVLPEVDKVRENTKLFIGVSTLENLVKGGRISRAKGLLSSLLNMKVIMDFDHSELIPIVKGRGVKTFNKWFEELKDELKRMPNVKQIGISHAEGLEITEQFKKELQQLFPEMNIPLLHTTPIIATHTGKGAFAITYYTE
>NZ_CP040461.1|WP_113849906.1|2209975_2210629_-|hemolysin-III-family-protein
MDHMKFTRRYLILNEVLNAVTHGIGFGLSIAGLVILLIKGARLDSPIHIISYAIYGSMMILLFLFSTLFHSLMFTRAKKVFQVFDHASIFLLIAGSYTPFCLLSIQGWLGWTLFILIWLLAISGIVYKSLTLHKKETVSKISTLIYIIMGWLCVIAFKPLIASLGFWGTFLLASGGVSYTVGALFYSIKSVRFMHVVWHLFVMLGAGLMYFSVLWFT
>NZ_CP040461.1|WP_003126959.1|2209417_2209912_+|dihydrofolate-reductase
MLIALWAQDKNGLIGENGTLPWHLPNDLKFFKEQTTGNSLIMGRKTFEGMKKKALPNRTTIVLTSDTAYEAEGVLVMHDRQEVLDYTAQQDHPVFLTGGSGVFESMIEDCDQLYRTVIDETFTGDVYFPEIDWSNWHLDKVIEGVVDEKNIYPHRFEFYSKQKK
>NZ_CP040461.1|WP_138371738.1|2208661_2209414_+|hypothetical-protein
MINDLQRGIVATLHITSKDTISLSDVEKTITILRSYFSQVILAVSEVTKPEIKRYLWQLPPQIYLFELPAVGAGPARRQAVARAGKTFPQLASFQLCDFDRLITWCEEYPDELSALSCQPFPTNTFCILGRTKKAFLSHPTAWQRTEKLVNEIAAEVFHIKGLDITAGSVLFSAELIPLLVSADSSRWTDGEWPTKVKHHGGHIFYQACEGLCYKEKNTDHLQAQPAYQLMRRLQIAAAIADSLYLEREF
>NZ_CP040461.1|WP_003126957.1|2207685_2208633_+|thymidylate-synthase
MEQAYLDLGKKILETGNVKGDRTGTGTKSIFGHQMRFDLSQGFPLLTTKRVPFGLIKSELLWFLKGDTNIRFLLQHKNHIWDEWAFERYIKSEDYTGPDMTDFGRRSLIDEEFNASYQEELQKFCERILNDEAFAEKFGDLGHVYGYQWRHWETTKGEFIDQIKEVIEMIKTTPDSRRLIVSAWNPEDVPTMALPPCHTMFQFYVHEGRLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLQVGEFIHTLGDAHLYSNHMEQMKEQLSRTIRSAPTLHLNPEKQSIFDFEMGDITIEGYDPHPTIKAPIAV
>NZ_CP040461.1|WP_138371737.1|2205766_2207671_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MKELKVSELTKTYGDKTLFDQLSFLIHEKDRIGLIGVNGTGKSSLLTILAGIEAGDGDRPSVFKPQDYRIGFLAQESQLKEELSVVDAVFQGTSPLIKTVRDYEKALIQLEQNGSDPTVQAAYSRAEEAMNKTDAWNTDTTAKIILQKLGISDLKQPVNELSGGQKKRVGLAQVLIDEPDLLLLDEPTNHLDYEAIQWLEGYLKNYRGALMMVTHDRYFLDRVANRVFELSFGKLYEYQGNYEDYLLARAERERIEETQEEKRQQLYKHELAWIRTGAKARTTKQQARIDRFDDLKENMNQVKRNGEVQIDVATSRLGKQVLEIKEGSYAIEGKPILSQFDLLIQSRERLGITGENGAGKSTLLNVLAGRLSLDSGTRIIGSTVKLAYYTQTNETMDPEQRMIAYLQEAAEEVEKTDGAHVSVAEMLEQFLFPRFMHGTKIGKLSGGEKRRLFLLKLLIGQPNVLLLDEPTNDLDIDTLTVLENYLESFPGAVITVSHDRYFLDKVAEKLLIFEGNAQIVRFYGSINEYLQKAATKQGTKKTAASQPDKGLQSKFVSEKPVKKKLSYMEQKEWATIEDEIALLEERVDALTEAMNQQGDDFTKLQQLQAEVTETEQLLEEKMTRWEYLSEFSDD
>NZ_CP040461.1|WP_029486972.1|2203608_2205645_+|sodium:proton-antiporter
MEFIELIIIIAILVTFSNIVSKILPSVPIFFIQIILGILLGLTEMGQEIAFEPEMFLVMIIGPLLFREGERADVPEILKNSKIVLFLAFGGVLLTLFAVGTTLHWLMPSIPLAACYAFGAALGPTDAVAVSSLAKRLKISKNIMHILEGEGLLNDASGVTALQFAIVALVTGSFSVMGAGFQLLFSSIGGGLIGYLIVWLKRRIIRFIEKISAQDVTVYLLIELLLPFAAYLIAEMVGVSGIIAAVVAGVAQAQRRRRVSLFDAELANISESTWSTIVFTLNALVFLFLGIELSQVFSPIWESNSYANGHLVLTIVVVTLVIFFIRFLFLLFYYQFLQSKKIVDLKQVALLTFGGVKGTVSLAAIFILPVTINGDQFEARSLLLFLTACVILATLVISVLVLPYLADGEAAESVDFNQLLILEEVIQILEEEEKETTDAKERLATDAVINTYENRRWELYRNSLTDSEKQEIQEIQGLILSIEQDGLDEAYRKGEVSSNGYRFYSRFISQQQHSLAKQFLSFFSFWLLIIQRFVRIIFHPKLFWQRQQQLKDALKQRDISEVQKIYIKNSDYIFHSLSNLEDVYDSSLINFFIRQREMSLKRFEHNNFIETIMIEQEPIFVKKVLRGYYLERKTIDEYEVAEKIPTISANEYRRNVNLLESYAMARADEQPKQRMFRR
>NZ_CP040461.1|WP_003126954.1|2203323_2203605_+|hypothetical-protein
MTKQCLTKQELMERLGEFSPAEKKEIREYLQRKNPLLFRKFERMKHELFRLESRRIQCEIEKNEKELNQLDHKILMKKEHFLELLIAIRKKRG
>NZ_CP040461.1|WP_081131318.1|2200897_2203018_+|penicillin-binding-protein-2
MKNLKDKVIKNIRKGPEEPKTKSYRKSHVPFRLNFLFFVIFGLFVALIVQLGYLQIVNGDNIEKQLKASSVVEVNGSSPRGMIYDASGKPLVKNQANAAITFTRGNKMTAEDLLKTAQKLATLIDIPIDKNLTERDLKDFWLADPENLKKAQDQLSSKQKALGASEQYAATVDKVTDEDIAFNDDQLKVASIFKRMNSAQSLSTVYLKNSDVSDEELAIVAENMTELPGVSTGTDWTRKIVEGSSLASLIGTVTTEEQGIPEENLDEYLAKGYARNDRVGRSYLEKQYEEVLQGSKSKSQITLDNSNNIESQKEIYAGSKGDNLVLTLDAKFQKEVDEILQDNFKSLMDSGAAEYSPGVYAVAINPKTGGILAMSGYQHEAESSKLQENAIGTFINAFVPGSVVKGGTLAAGWENGVLNGNEVLYDQPIRIGSDVKASIFNPTGANNRNLSAEQALEVSSNSYMMQVALRLMGIEYQPGISIPTVDRQTEAYSKLRTAFASFGMGTKTGIDLPGEATGISTPVDKLDTVSDGGKILDLAFGQFDTYTTLQLAQYAATVANGGQRLQPHIVSGIYGNDETGGLGSLKSAVEPTVLNEVGLTTDQMKIIQNGFYDAVHGTDAWATATGLASAKMELSAKTGTAETPIVDENGKTINLVNLNIVAYGPSDDADIAVAVVLPQVKSSTTSHPNVKIVKEIMDAYYDLYMK
>NZ_CP040461.1|WP_138371736.1|2199501_2200599_+|LytR-family-transcriptional-regulator
MRLYQKVILGLLGLVAVSVVGVTVYGMKVYDDTNKTFNNITQSADRKTKKRETAVSIEDREPFSILLLGIDTGALGRTEQGRSDSMMVVTVNPAKKQSTIVSLDRDIYTQIVGYGTLDKLNHAYAFGGEAMSMDSVENLLDIPIDHYVTINMQGMRDLIDAVGGIEVTNKIDFTLEGVHVPKGTITLDGKTGLAYARMRKQDPEGDIGRQKRQREVVTKIVKKVMSLDGVSNYQKILKAVEKNSKTDLTWDDMMDIATNYLPAFTTIDQEQLQGEGQMMNGVYYQLLGINQLLEMQNKLKEQLNLPTSETLSQGDEHTDGYTNYQLYDDTNYNSEENSNENLGEPSDIYDDGAGYQEDTGDYSGY
>NZ_CP040461.1|WP_138371739.1|2212063_2213014_+|SGNH/GDSL-hydrolase-family-protein
MKWKKVAIYLSVVLIVALGTGMLGHFLIPKAQPLLTPVARTAEEGKTKNVINYMALGDSLTEGVGDETQQGGFVPIVAADLQDRYHLANVVTTNYGIAGERSDQILKRVNKDKELRSDLKKADLITLTVGGNDVLKVIQTNFFGLSVDSFTKPMADYQERLVEMFEQIRQLNETAPIYVLGIYNPFYLNFPEITDMQTIIDNWNKATETFVKKQHNAYFIPINDLLYQGLSDEVGIADTDSSEAGASGSAETSDTTTSTTNGMTGTSETGGTKVTNNVLYDGDRFHPNNLGYQLMANAVRDELIKTQNVWLMKEEK
>NZ_CP040461.1|WP_005472266.1|2213013_2213652_+|YpmS-family-protein
MKQETNDVDKKSPIKKMNYWKIAFLVLVGILLGTTVFFASRVFQQRESGISESAELVKRDGNPVLTINSNKSQVNQLIDFYLTDFQKDQEVKYNFELRNEALLTGQFKVLNFPITFYLYFDPYVTEEGNVQLKAKSLSIGTLDLPTSEVLKMIKRSFKFPEWIEVNADEQIILIRLDQFRMQNGLFIKANKINLVDDEIQMSLYLPAETEDK
>NZ_CP040461.1|WP_003126966.1|2213651_2214173_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MERAIFAGGCFWCMIQPFDELEGVQSIFSGYTAGHTVDPTYEEVKSHKTGHTEAVEIIFDPEKISFEELLTIYWQQTDPTDAFGQFEDRGDNYRPVIFYFNEEQKQKAEASKAALQASGRFNAPIVTSIEPAQPFYLAEEEHQEYYKKHPENFARNHARRAAFLEDHWENTHA
>NZ_CP040461.1|WP_003126967.1|2214165_2214387_+|YozE-family-protein
MRKSFYTYLMAIKGPSHTDEAQIFATHASHDIQFPKHTDDYDEVSSYLELNVDYLPSMDIFDRIWEQYVEDNK
>NZ_CP040461.1|WP_138371740.1|2214462_2215884_+|S41-family-peptidase
MKNVSFHRYVISLICVAILSGGGVYIWQKSTAATQSPQNQPTVATSNELEKVQTLFDQIRANYYQEVDEDVLVEGALKGMTDALGDPYTTYLSESAANELDQSLSSSFEGIGATLTLVNDYPEVAQAPIKNSPAEKNGLRLNDRILKVDGKETKGLSLTEVVNNIRGKKGTTVKLTIQREKETFDVSITRDTIPVDTVHTDLDSEKKIGKIEITTFGESTASELKEGIESLRKKGAKSFILDVRQNPGGLLDQVQIMASMFLEDGKTIVKFADDSGVISETKASAALDEGFKVTEPVVVLVDGGSASAAEIFAAALQESADIPVVGTETFGKGTVQNVKELGDNSELKMTVMKWLTPNEEWVNEQGVMPDHQADFPEYAYLAPLPRDKELKEGQSSEAVDRLNQFLSALGYRTTGDTFDQTTVSAVQAVQQKAELEVTGKVNAETAQAIEKAVTDQLKQEDHAYLKAVDLLSK
>NZ_CP040461.1|WP_138371741.1|2215910_2216459_+|signal-peptidase-I
MQRRKIWIDRFWFIIKYAIIALASAFLIRAFLLIPVPVGGNSMEGTLRQGDIVLIEKISPIKRFDVVVFQMPDGSTYIKRVIGLPGESIRYENDQLYVNDQPVDENFLVKNRKNDHENVSYTNDFDLQSLLGVEKLGKDSYFVIGDNRRASKDSRSFGAISGDAILGNARFVYYPLTHMRFI
>NZ_CP040461.1|WP_138371742.1|2216901_2217738_+|PRD-domain-containing-protein
MKVKKIINNNVALVDRGGHESIIYLTGVAFKKKVGQHISDSEVEKTFVLDSQDRLEHFSYLLSRADDQLILLVNELVQYGEKEIGKSANDYLYLALLDHLSFALKRAKKDQYLRSPLTWEVKKFYPSYYKIGLEALERINQTFQVDFPEDEAVAIALHFVNLQETKAKFDEQLADMETLRDMLNIIKYHFTITLDENSMNYMRLVTHLQYFIGRLRNNQTYSDNESQLYKQVKAMYPEAFAAVEKIEIYVKGKFNSYLTQEEYTYLMIHINRVTERGE
>NZ_CP040461.1|WP_138371743.1|2217739_2219593_+|PTS-beta-glucoside-transporter-subunit-IIBCA
MNQYHDFNEQIIKLVGGKANIQAVVHCMTRLRFTLKDRSKADTKKLQELEGVIDVVSNNVAYQIIVGTHVNDVYKDLVDQLGMSGDEADQPKTKKNPIKAMLDVISESMNPILEPIICAGLLAAFLSIISLTGLISTDSSTYQIFDALRSAVFYFLPILMAMSCAKRLGASPYLAVALAATILSEPINNVSGLSLFGIGLPQITYSNSFIPILLAVWFMGYVTKFAKKVIPKSLQYFMSPLVIMLITLPATLLVFGPLGFYIGEGIIGFFNLLMDTIGSWFVMMLYSALQPFIIMLGAGNFIMPVVASLIAANGYDPAFISSCTISDIAVGGAMLGYFLRARNLKQKQLFGTVTLSAILGVTEPAIYGVFVKFRRPFIAVMIGGGLGGLFAGLTGVKAYSIAWGLFGLPAYIGEGDFMNLWLMVAAVAISFIGATIAAYMLGIPVESDEVPAVKEKEQPVSSEMIRSTALKSVVEGEVVPLNEINDQAFSTGALGKGIGIKPISHVIHSPIDGEVLTVFPTKHAIGLRSDQGVEVLIHIGIDTVSLEGKYFTMNVKQGDRVRTGQPIGEVDFEKVREAGYDPTTIVVITNTNDFLDVIPTSNNQLVKSDDLLNIVLQ
>NZ_CP040461.1|WP_103299913.1|2219627_2221073_+|family-1-glycosylhydrolase
MKLRNDFLWGGSIAAHQCEGAWQEDGKGPAIMDYVTVGSYEQPREIDKELLANKVYPSHTGIDFYHRYQEDIALFAEMGFKALRISIDWSRIYPKGDEAEPNQAGIDFYHRVVDTLLKHGIEPIITLYHFEMPIHLVTEYGSWTNRKVVDFYLRFCRTMFEAFKGKVRYWATFNEMNHIDPQSEASDIFTYIIAGLKYSEIDAKAQTLAMIGYNMTLASCAAVKMGHEIDENFQIGCVFGIEPVYPANCDPVNVLNAYKQMDRDFYQIDAMCNGLFPQYKLEEYADQGIKIVISESDKKVFAEGKIDFIGMNYYASSVAEYEGASEGKSALFGGLQNPYLESSKWGWTIDPIGMRYLLNYTYRKYGLPIMITENGLGAVDEIAEDGHVHDAYRIDYLHRHVEQLLLSVEEDQVDCIGYLTWAPIDLVSATTGEMKKRYGFIYVDKQDDGTGSYMRKKKDSFEWYRQVINSNGESIKRENHE
>NZ_CP040461.1|WP_003126974.1|2222041_2222911_+|ribosome-biogenesis-GTPase-YlqF
MSTIQWFPGHMAKAKREVSEKLKFVDIVFELVDARLPISSRNPMLDQILQQKPRLILINKADLADPQQTKLWEGYFRKQGFLAMAINAQDSQGIKMIVPKAKEVLQEKIARDKARGLKPRPIRAMVIGIPNVGKSTLMNRLVGKKIAQTGNKPGVTKGQQWLRFGTELELLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALFGLDFFARYYEGRIAQRYSLSAEEEQCLAPELLMKITEKRGYKDNYDRGSELVVFDIRQGKLGRYTLDRYEELGEKDERAD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1323371 : 1332900

Only_Syngen_Nebraska_virus(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005472769.1\|1323371_1324418_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-20	30.9
WP_003128581.1\|1324432_1325368_+	ABC transporter ATP-binding protein	A0A1J0FA64	Only_Syngen_Nebraska_virus	2.7e-05	23.5
WP_081131391.1\|1325384_1326422_+	helix-turn-helix domain-containing protein	A0A288TXV8	Enterococcus_phage	1.7e-61	45.1
WP_060813097.1\|1326620_1327451_-	NUDIX hydrolase	G3MA14	Bacillus_virus	2.7e-25	31.7
WP_003128585.1\|1327496_1327787_-	hypothetical protein	NA	NA	NA	NA
WP_003128586.1\|1327950_1329957_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.9e-96	37.7
WP_138371473.1\|1330221_1332900_+	cation-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	1.4e-70	28.2

DBSCAN-SWA_2

1879976 : 1897258

Streptococcus_phage(92.31%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103300911.1\|1879976_1880291_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	2.7e-26	54.4
WP_029487158.1\|1880303_1880678_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	1.1e-34	67.0
WP_103300910.1\|1880678_1881032_+	damage-inducible protein J	NA	NA	NA	NA
WP_103300909.1\|1881100_1882468_+	DUF87 domain-containing protein	A0A1S5SFB5	Streptococcus_phage	3.3e-161	63.2
WP_138371660.1\|1882513_1883656_+	DNA cytosine methyltransferase	A0A1S5SEK0	Streptococcus_phage	5.6e-130	64.7
WP_103300908.1\|1883681_1883936_+	hypothetical protein	NA	NA	NA	NA
WP_103300907.1\|1884192_1885377_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	3.5e-143	62.1
WP_103300906.1\|1885373_1885511_+	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_002298822.1\|1885515_1885737_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.5e-28	87.7
WP_103300905.1\|1885749_1886253_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	2.9e-54	62.2
WP_103300904.1\|1886353_1887418_+	nucleoid-associated protein	NA	NA	NA	NA
WP_103300903.1\|1887436_1888918_+	hypothetical protein	NA	NA	NA	NA
WP_103300902.1\|1888977_1889367_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	2.5e-42	67.5
WP_138371661.1\|1889353_1891801_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	75.6
WP_103300900.1\|1891805_1893929_+	FUSC family protein	A0A1S5SF30	Streptococcus_phage	7.3e-184	59.8
WP_138371662.1\|1893925_1894930_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	9.6e-118	63.2
WP_103300898.1\|1894948_1895860_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	7.5e-61	42.7
WP_138371663.1\|1896280_1897258_+	choloylglycine hydrolase family protein	M1H001	Paramecium_bursaria_Chlorella_virus	4.2e-25	29.3

DBSCAN-SWA_3

2709860 : 2718749

Lactobacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003126538.1\|2709860_2712284_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	66.7
WP_138371906.1\|2712302_2712908_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	3.7e-72	67.2
WP_138371907.1\|2713207_2714122_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.0e-71	45.1
WP_113849678.1\|2714363_2715314_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_003126533.1\|2715428_2715890_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.9e-37	54.0
WP_005471510.1\|2715909_2717088_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.6e-101	50.4
WP_021149731.1\|2717080_2717701_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.5e-32	39.4
WP_138371908.1\|2717669_2718749_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.2e-35	35.3

DBSCAN-SWA_4

2758707 : 2795307

Bacillus_phage(30.0%)

holin,terminase,portal,capsid,tail,integrase

attL 2765877:2765892|attR 2797728:2797743

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138371934.1\|2758707_2759154_-\|holin	phage holin family protein	A0A097BY69	Enterococcus_phage	1.6e-45	72.1
WP_138371935.1\|2759185_2759392_-	hypothetical protein	NA	NA	NA	NA
WP_138371936.1\|2759391_2760285_-	hypothetical protein	A0A2H4J3N3	uncultured_Caudovirales_phage	4.5e-10	45.9
WP_138371937.1\|2760250_2761390_-	hypothetical protein	A0A2H4J3N3	uncultured_Caudovirales_phage	4.3e-90	47.8
WP_138371938.1\|2761373_2762369_-	acyltransferase family protein	NA	NA	NA	NA
WP_138371939.1\|2762423_2764793_-	hypothetical protein	NA	NA	NA	NA
WP_138371940.1\|2764856_2765114_+	hypothetical protein	NA	NA	NA	NA
WP_138371941.1\|2765163_2765982_-	hypothetical protein	NA	NA	NA	NA
2765877:2765892	attL	NA	NA	NA	NA
WP_138371942.1\|2765983_2769436_-	tape measure protein	Q938K3	Temperate_phage	2.9e-89	55.5
WP_138371943.1\|2769428_2769998_-	hypothetical protein	Q5YA62	Bacillus_phage	4.2e-38	45.6
WP_138371944.1\|2770007_2770451_-	hypothetical protein	Q5YA63	Bacillus_phage	6.7e-15	30.3
WP_138371945.1\|2770496_2770811_-	fibronectin type III domain-containing protein	D2J067	Enterococcus_phage	1.2e-21	49.0
WP_138371946.1\|2770836_2771295_-\|tail	phage tail protein	Q5YA64	Bacillus_phage	3.4e-22	42.1
WP_113849974.1\|2771294_2771702_-\|capsid	capsid protein	Q5YA65	Bacillus_phage	2.0e-37	56.6
WP_138371947.1\|2771701_2772034_-\|capsid	capsid protein	Q5YA66	Bacillus_phage	1.5e-22	48.1
WP_138371948.1\|2772033_2772372_-	hypothetical protein	NA	NA	NA	NA
WP_138371949.1\|2772371_2772761_-	hypothetical protein	Q5YA68	Bacillus_phage	6.1e-20	43.4
WP_138371950.1\|2772790_2773036_-	Ig domain-containing protein	A5GYM0	Lactococcus_phage	8.8e-17	69.7
WP_138371951.1\|2773047_2773908_-\|capsid	capsid protein	U3PDP8	Lactobacillus_phage	5.0e-99	63.8
WP_138371952.1\|2773910_2774477_-\|capsid	capsid protein	K4K7P1	Streptococcus_phage	5.0e-07	40.2
WP_138371953.1\|2774599_2775748_-\|capsid	phage capsid protein	Q5YA73	Bacillus_phage	1.2e-52	33.9
WP_138371954.1\|2775752_2777291_-\|portal	phage portal protein	Q5YA75	Bacillus_phage	1.1e-107	46.2
WP_138371955.1\|2777278_2778601_-\|terminase	PBSX family phage terminase large subunit	I1TLD6	Bacillus_phage	1.3e-141	57.7
WP_138371956.1\|2778548_2779091_-\|terminase	terminase small subunit	A0A0B5CU16	Listeria_phage	1.3e-36	55.0
WP_138371957.1\|2779194_2779983_-	hypothetical protein	NA	NA	NA	NA
WP_040013712.1\|2780417_2780831_-	autolysin	D2IYV6	Enterococcus_phage	1.9e-43	64.0
WP_138371958.1\|2781022_2781211_-	hypothetical protein	NA	NA	NA	NA
WP_138371959.1\|2781200_2781383_-	hypothetical protein	A0A1D7XFI0	Escherichia_phage	9.4e-08	51.9
WP_138371960.1\|2781421_2781640_-	hypothetical protein	NA	NA	NA	NA
WP_138371961.1\|2781639_2782008_-	hypothetical protein	NA	NA	NA	NA
WP_138371962.1\|2782007_2782373_-	hypothetical protein	NA	NA	NA	NA
WP_138371963.1\|2782669_2782855_-	hypothetical protein	NA	NA	NA	NA
WP_138371964.1\|2782923_2783139_-	hypothetical protein	NA	NA	NA	NA
WP_138371965.1\|2783186_2783465_-	hypothetical protein	NA	NA	NA	NA
WP_138371966.1\|2783476_2783866_-	DUF1064 domain-containing protein	A0A1P8BKR1	Lactococcus_phage	1.1e-16	43.9
WP_138371967.1\|2783862_2784165_-	hypothetical protein	NA	NA	NA	NA
WP_138371968.1\|2784145_2785006_-	DnaD domain protein	A0A1L2JY26	Aeribacillus_phage	7.4e-18	33.6
WP_138371969.1\|2785021_2785816_-	hypothetical protein	E9LUM4	Lactobacillus_phage	6.7e-66	45.8
WP_138371970.1\|2785787_2786666_-	hypothetical protein	A0A290GJN8	Caldibacillus_phage	5.6e-98	65.6
WP_138371971.1\|2786662_2786986_-	hypothetical protein	NA	NA	NA	NA
WP_138371972.1\|2787053_2787245_-	hypothetical protein	NA	NA	NA	NA
WP_138372223.1\|2787248_2787497_-	hypothetical protein	NA	NA	NA	NA
WP_138371973.1\|2787498_2788026_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138371974.1\|2788089_2788344_-	hypothetical protein	NA	NA	NA	NA
WP_138371975.1\|2788340_2788589_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_138371976.1\|2788754_2789120_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	3.6e-14	44.1
WP_138371977.1\|2789131_2789605_+	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	3.3e-20	38.1
WP_138371978.1\|2789616_2790414_+	DUF4428 domain-containing protein	X5JB37	Clostridium_phage	5.4e-23	41.4
WP_138371979.1\|2790479_2790695_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_138371980.1\|2790744_2791668_+	hypothetical protein	A0A1S5SBK8	Streptococcus_phage	1.2e-21	28.5
WP_138371981.1\|2792221_2793376_+\|integrase	site-specific integrase	A0A2I7SCV1	Paenibacillus_phage	1.4e-91	47.5
WP_003126516.1\|2793471_2795307_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	3.8e-19	41.0
2797728:2797743	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040462

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040462_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040462_1

180750-180846

Orphan

Consensus_repeat	Method
TTTTTTAGGTACAATTTTTGAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040462_1

>merge|NZ_CP040462|1|180750-180846|CRISPRCasFinder
TTTTTTAGGTACAATTTTTGAACCACTTTTTTTCATCATTTTATAAAATGATGAAAAATCCCCCTGAAAACCTTTTTTTAGGTACAAATTTTGAACC

>NZ_CP040462|1|1|180750-180846|CRISPRCasFinder
TTTTTTAGGTACAATTTTTGAACC	ACTTTTTTTCATCATTTTATAAAATGATGAAAAATCCCCCTGAAAACCT
TTTTTTAGGTACAAATTTTGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040462.1\|WP_103301188.1\|176433_176622_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_138372337.1\|180861_181836_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_103301190.1\|177744_178110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_138372340.1\|183749_185243_-\|replication-protein-RepR	unknown	unknown	gnl\|CDD\|378031
NZ_CP040462.1\|WP_138372333.1\|170147_174878_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|227268
NZ_CP040462.1\|WP_138372339.1\|183310_183598_-\|type-III-secretion-system-protein-PrgN	unknown	unknown	unknown
NZ_CP040462.1\|WP_103301192.1\|179335_179521_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_138372335.1\|177426_177714_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_103301197.1\|185630_185957_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_002300091.1\|186330_187296_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP040462.1\|WP_138372342.1\|189446_189950_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_138372338.1\|181940_183110_-\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|224828
NZ_CP040462.1\|WP_138372332.1\|169576_170089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_103301198.1\|187295_187760_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_138372343.1\|190043_190631_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP040462.1\|WP_138372331.1\|168492_169221_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040462.1\|WP_103301181.1\|169237_169573_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226852
NZ_CP040462.1\|WP_138372336.1\|178407_179190_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP040462.1\|WP_138372334.1\|175039_176413_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375875
NZ_CP040462.1\|WP_138372341.1\|188083_189463_+\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|176454

Protein	Function_ID	Function_description	E-value
NZ_CP040462.1\|WP_138372343.1\|190043_190631_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	1.04769e-43
NZ_CP040462.1\|WP_138372338.1\|181940_183110_-\|TraB/GumN-family-protein	gnl\|CDD\|224828	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown].	8.03098e-83
NZ_CP040462.1\|WP_002300091.1\|186330_187296_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	3.46417e-34
NZ_CP040462.1\|WP_138372340.1\|183749_185243_-\|replication-protein-RepR	gnl\|CDD\|378031	pfam08708, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	2.85672e-15
NZ_CP040462.1\|WP_138372333.1\|170147_174878_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	6.77152e-39
NZ_CP040462.1\|WP_103301181.1\|169237_169573_-\|hypothetical-protein	gnl\|CDD\|226852	COG4443, COG4443, Uncharacterized protein conserved in bacteria [Function unknown].	9.7665e-18
NZ_CP040462.1\|WP_138372336.1\|178407_179190_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.55132e-19
NZ_CP040462.1\|WP_138372334.1\|175039_176413_-\|hypothetical-protein	gnl\|CDD\|375875	pfam18449, Endotoxin_C2, Delta endotoxin. This is domain (D-VI) can be found in Bacillus thuringiensis (Bt) insecticidal protein Cry1Ac. Full length structural analysis reveal that Cry1Ac contains seven distinct domains (DI-DVII): the three canonical toxin core domains (D-I through D-III) and four protoxin domains (D-IV through D-VII). Cry1Ac is sickle-shaped with the toxic core as handle and the protoxin domains as the blade. Domains IV and VI are alpha-bundles that resemble structural/interaction domains such as spectrin [PDB ID: 1CUN] or bacterial fibrinogen-binding complement inhibitor.	1.31591e-06
NZ_CP040462.1\|WP_138372341.1\|188083_189463_+\|Y-family-DNA-polymerase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	7.87552e-123

>NZ_CP040462.1|WP_103301192.1|179335_179521_+|hypothetical-protein
MANNIEFEVEQVYKGRTNEIFVITDPETQVQYIQTIVIGSDGKGVAITPRLEPDGSIHYKD
>NZ_CP040462.1|WP_138372336.1|178407_179190_+|alpha/beta-hydrolase
MDTIHYKEFGSGKLIYFIHGNSLNLESMIEFYEPFFETNQSFRRIYLDIPGMGDSYLKPSINNSDDILEEIYSFILDHSNNKNFSLCGHSYGGYLCLGLATLFPNISNLFLTCPVVKAKHRERILENHKVIVQEEVIPVDNKEYFEDYLDMNVQISNLSWSKYQHSILPGLKKGTDSFWTNISEEDYMLSFENLLFDRIKDTHCTVLLGRYDQIVGYKDQLELMNDRKNFEVKLLSHSGHNLPIDEPDSLFLFFKNFIES
>NZ_CP040462.1|WP_103301190.1|177744_178110_-|hypothetical-protein
MNKLKLVLIVKIGMLVGLFSFLIMIAMTLQRQQSYFENTIDSIKFECGLAYDEKYELRETIDHNYVQQIVWKIGSIRNYPVSFTSKILLKEEANEKSLDETWENVMYLVEMYSEKRIDSQK
>NZ_CP040462.1|WP_138372335.1|177426_177714_-|hypothetical-protein
MEYTLALESMTALNSKSDQFKEQVILFAEENSGIGVTFDDFEKWLNQKGFRLVATDKKWKAVLSSIIKRRFYYEVSYKYDCDRNLITVFTLKCIT
>NZ_CP040462.1|WP_103301188.1|176433_176622_-|hypothetical-protein
MEWNMSTEKELPRYDAYGRPLHRFEIGITYTVINKGNYLVCLLPGETEQIKPVIINAVRFDD
>NZ_CP040462.1|WP_138372334.1|175039_176413_-|hypothetical-protein
MKKWNELSKATKRISIVIGAAVVLGGGFGGYKVYAQQQHTQAKAAIEASLEEVGNQGALAKTIATFANEKGYLAKDLDSKAIDTAKQQLNTLRNSVADYEEKYSNEDLANEAEISNLEKEISTVESKLSTQLTVNKLYQQETQALNGSEVAKSLVLADKVDAKAVEAVKLDKFSEDEWKKSVQGLLDQATTQVKDIESATKAVNDCYKDNKVKSDVTKKSYESAKKAVDKVKRQTDKEALQNKLTEIKKVVDANEKKAKEAEEKKKAEAKKKAEAEASENGGTVVETKEGEYEVVSESNGEGNTGSQSQSQVGNNSSGGPSRNSGSGSYSSGNSSSYKGGGSSSNSGNSGGSSIGGVSGSSGSNSGSGSNSNAGNSGSGGGSNSSSGTNSGSNSGNTGGAPTIVSGYVGNSGRVFSTALEANTWANNILDTDFSKNGYYLVGIFYSDGSEKFSIDWY
>NZ_CP040462.1|WP_138372333.1|170147_174878_-|LPXTG-cell-wall-anchor-domain-containing-protein
MCMSKVKKLMTTLMLVLTFSGTIAEPVSVFADTTAGTSETKTVKEESSSAEVAEDSVEETETSTAYSDQTLNTKSDQEEKIGESQNANDSPISEGEKQSVNKYLDGYGFKMLDDGKIVSTNGTSYRDDYLSVIQEVKNMLNPNRISFRMARAAGQSVYVKRDYGSSTIGWTYSNGISELGWYAKKDKNGGMLWCIEPGIPLNWGENSPYTTSEDTHEKYVRASLAVYYGWEKQKSVINAFYTERLVQEITTGVTTSGIHDSNGKASQSGYNTFRKKVLAEVETFYNLPSFARKTYTVRLGETLTLTDSNGSLSKYKVTADTANVTVAQSGNTLKITPKSSSNASGSLRLKYQISPSYSYASLLFSAPYLQDVLRAGISDPKAFNVNLNVELQGQGEIIKVDENGKGLAGAQFEIKNKKTKRTETKTTDKDGKISGKWDLGTVLEIQEVKAPKGYILSTEKKTLTIEANKTKSVTFANKAQLGTITVDKSGAEFGTTMPNSNYTLKGNTFDVYAGTKASGTSVATITTDSNGQAKTKNLPLGTYTLKEKAASEGYILNNDTWTVEIKYAGQNVEITNVDQKIENKEQKGSVVLTKQDSSTGSTPQGDTTFAGAEFDLFRKSDNKKLGHYKTNAKGQLTVDNLLIDNYYFVETKAPVGYVLDKTPVEFSIEYAGQTASVAKQATAIKKNKVITGGFDLIKTGNYNWYTNAWNWITGKDTSDQPTVLEGVEFTVTQDFGNKAVVDKALTDEQGYVSFENLPYGTYVVSETKTPTGYKGIADFKVTINKDGQRFHYVVENKVKEAQVKFVKIDSETRKPIVRSNAGFEIYSKTTGEQLIMKDLQGKDQSVFYTDDKGILQLPTQFAFGNYFAKEVKAPEGYVLAKDTIDFKVTGEEKDGLVVVTIKNDNQKGQLTLHKTVQTAMSVAEKENEHGSYSEIKFEQGHGEGFSFKIRATEDIVTADGTTRMKAGEFLQKDGQDQVWTTDSEGNFQTQANLYIGNYELVEVKAPAGVNLEDNKPITFEITYAGQSVEISSTTATAENYLQSINIYGHKKQEVITGWEDGKAVVELEDANNGQVFALKTGQDLQIGETTLPGGTTLGYAVVKDGVISFGNMLLPNVQADYYLQEVNAGSDHVLSEEQHFFTYTPANNNRKHEIYVWSDSFAENKQTLTRITRNPIINKLARATVKLVKTDDLDGQALENVAFDLVRIDSTTDENGEESTTETVISKHATNAAGEIVVENLPTGHYKFVESRPLEWYEDNTDDLSFTVTPKEDDTVIELSAVNYRKPFEITTKFATTKDGLKQVNPDIDNDLTDYVSVDGMKPGHTYYVDTTYSNRDTKEVVSTSPSEITTDKEGTFEFTTNLLVPKGTLKDGTRLTATHIIYEDKEKTKEIGRHDDLENDDQTVTFKTPKISIHTKAHTGDNKTQTFTHGDIITAYDNVELSHENVLDGTQRALEAILVAQTPDGKTTDIWSSGKIDYVVNDSTIVKQVKTKVDTSKYPEGTTFFFKEVGYNEAGEKDSEHNFDGKDTEQSLTPVKKGTLPKTGSKASIYLTVAGAVLVLVVFGGYFYLRNRKNK
>NZ_CP040462.1|WP_138372332.1|169576_170089_-|hypothetical-protein
MAEITNNGPGILHLTLGLDVFLTYDDTGKKIKTIQLSKSRLGELFRNNIVTRTSITRVKKIGLIIGVNNKLVINIEEIVGLDEKGPIVLNVDNEKTQAKYADKDIFQMSYFEFIASNEQELSSEQIEMLYKLNQKYTAYLEEQISAIKAKRRKRNIRRSAIAHQKSSRRK
>NZ_CP040462.1|WP_103301181.1|169237_169573_-|hypothetical-protein
MVLDLTKNQPQEKKEMSFEKVERIGIIAKSNTGWTTELNRISYNGRDPVYDLRTWSPEGKMGKGMTLTDQTLENLLIVLKAHLEGITPDGESGQTEQEKESEISAHLPDNF
>NZ_CP040462.1|WP_138372331.1|168492_169221_-|hypothetical-protein
MSQSQQEAYQVICKGTPQKLYQLFRLLSMLKRAAKTREMKKKETEVTSSDWNKFQKLREELELPDNPELERKFKTLSREQRIELIRDCEKKVLIKAGEKDYEFFMASNKMLAEPQLLNKEVNLEQLKAMMTEYGMQFHLKELPDQSMELHFFAKDANIASHAIRRTIDTIVNDPSTVTKPTLESLIKDARDRVKEKAAQVEQAKESTVQLSQIGGEVGDSAKEAKEALDALSLFESSGGIEL
>NZ_CP040462.1|WP_138372337.1|180861_181836_+|hypothetical-protein
MDYKSKLITLREERELTKSALYGGICSKGKYLSLEDETNTTSVTISEMTAILDRLGMGWSEFIEYTDLSTKKNMSYGRWKLELLDIAQNLNDRKEVKQNLTDFIEKIRNSNFNTTQSFSIYIAAIHLCVLLDLPISYDRTQIYEFALNLYKDRNEYYVVDYEIIGNIASLLTVKELTTLADYLFPCQLNRGYTHDDIVQISATNIIEFLIKQKEYSLASEWIEKIRNMIYTKGFIKNTLTTLKLLFLKEEVKFRITKNIKHYLELLRYADLFKELGETVLHKAILNDSLHQISKEYNIEIPHDYLLYHNYYTEQLDQLEDKVDY
>NZ_CP040462.1|WP_138372338.1|181940_183110_-|TraB/GumN-family-protein
MNIDHCENVNRLDYAGKTYYIVGTNHVSSESALLVTEVLETVQPDTVCIELDEKRYDAFENGNNWNELDIVQVFKQKKASMLLMQVFFSGFQKRLAMNLKEKVGGEVRVAIDYVKSEKKFLNLVDRDVNITFKKIWRSMSFREKVFLPIAFFENIDISDELTETELTEKLMEMDMVDSFFGQLEDRFPNIYQQMIGERDLYQVSKIRESSGEVIVVILGKAHVEGVLENFDMNVDREKLEKIPDKKFSDKVLEWIFPIVLVLLLSLGFFNGFESGMSQVIRLLLWNGSCAALFTLFTLAHPLTILTSFITAPIGTFSPFLSVGMFSGIVEATLRKPVVKDFENLSSDIFNVKSYYKNRALRVLFIFVVASLGGVVGNIIAGFDIIKNLI
>NZ_CP040462.1|WP_138372339.1|183310_183598_-|type-III-secretion-system-protein-PrgN
MGVNTFVYPYPVSVFIIQRLGISVEEFCELYGYRQSTVATWAYRNRSVKVLPCDFLYCLSLSSGWSMDKVYQDLLVLEEEYLKKIDPKKSKEWVD
>NZ_CP040462.1|WP_138372340.1|183749_185243_-|replication-protein-RepR
MTVTLDVVYATVLHDGIRKFKYKNSRLKPVSFSEQTGKGAIFAYRSKEHMIEGIGLVITSEEGIIENNNKFSHWTPNVFRYGTYADEGRMFTKGHSEDNLRQINTFFVDFDTLDPNFDYGEILLASHELGFMPTMVLQTPHGYQAFYVLDQPAFVTKKSNFKVINVAKMISNNLRKTLAKDFPVDVNANHFGITRMPTEDNILFFEPQYRYSFSDWINWSMRIDADKAAAYKNIFELPSNQDFRQVDEPWFRLLMCSEKIKGEKGRYGRNNVIFTLSLAYFSSGYEIEECELAMLEFNDRLAYPLIDRELTRIIRSAYSKKYQAAHREKIVLLCQEWVDENLSEEQLFNKKKGWWKFKKERKMRKYSHSHEWAQDLLDYLNKQSYTYKPYIVSTKKELREELKIPERSLDKVLKQLKNENKIYYRIRSGRNGGITLASVYGLMRSIIRVKKEVQEAYFSALSEAFGLARTFIYATLEQLIEPPKKAEQIELFEVDTG
>NZ_CP040462.1|WP_103301197.1|185630_185957_-|hypothetical-protein
MKKNSKEFRNEYDRFVLKFLIDNYYISRIDLSKAIGLAPSYVREFYNGSRSFGNEALEKLESTIFNLYKPLLENHSFELNQVQEMIGSIDSEEELELFRLKGANVLDI
>NZ_CP040462.1|WP_002300091.1|186330_187296_+|AAA-family-ATPase
MAVVLTVAANKGGVGKTLITINLAGAIRRSFPEAKILVVDTDAQGNSTKSFRVKVAKDQNTIYDVFMDNATVEETIVQTYDDHIDVLPANSDNNYLEFDKMEQFRDTILEWFVSLLKKFKDNLTEIMTVSGLKKKMNNIIDPSANYFNALDGKFDNVSDKYDYIIFDTPPELKQVTSSVLSIADVVIVPYEPDLNGVDGVTHLISRVNTLKEKYNPNLRIGGVLANKVYNTNLHAKMINAMMKYTNRNNYHYFDSELPRSITFADKLVRNGMPITMSSPENKFAQHFYKLIIEMNKLGLLSKNGKELEIPHKLYVESDGEE
>NZ_CP040462.1|WP_103301198.1|187295_187760_+|hypothetical-protein
MPRINRKKPAGDFESVFDDELEELETPSDTIDSIPETEVTASNSFPSDKETITENFNEANRFGLSKTSKSASSELVARTFKYKKETIQRVESLVYKDQRHSKKIPGTKGFISDFMDNAIWQHLLQLGLATEEEVQKHLNSYSKYPLNFDNYEKK
>NZ_CP040462.1|WP_138372341.1|188083_189463_+|Y-family-DNA-polymerase
MVVQFGVNPTFDYAKEPSRDILCIDCKSFYSSVECVERGLNPLKTKLVVMSYPSDDPLLRGSGLILASSPASKAAYGISNVSRARDLPFPYPKDLIIAPPRMALYMRKNMEINNIYKEYADEQNHAVYSIDESFLDVTDSLRLFGAKDANELARMIQIDVYKRTGIYTTVGIGDNPLLAKFALDLESKKNPHMRAEWRYEDVPGKLWTIDNLTDVWGIGSKTAVKLYRMGIFNMHDLAHAYYYKLKDKFGVLGTQLYASSWGIDRSFLGQKYSPKSKSIGNSQVLNRDYTRRNEIEIVIKEMADQVATRLRRAGAKAEVVSLWIGFSMGYVDRAGNRGFSQQMKVPATNSSKQIASYLLQIFNRHYKYQDIRHVGVNCSKLVFSNSLQLDLFTDPDEQVKDLKIDYVVDTIRKKYGFKSIVHANSLLEGGRAIARSSLVGGHAGGLAGLEGGESHGKAN
>NZ_CP040462.1|WP_138372342.1|189446_189950_+|hypothetical-protein
MVKRTKKAFLDYNEFRDRPFGLKWGTAYAVDELVKGIKENEAWAIKEVAALELMNREEIDVILSESFLYHKPVSIQLNTKDEFGRLLDPIEGLFVGEAYEDYFVINDQQIFWTDVRHVEIKKEKKWFDIDYFRNKSSPSKIEEKKKKRDPEIEIIKNEYYQPFVEDD
>NZ_CP040462.1|WP_138372343.1|190043_190631_+|SOS-response-associated-peptidase
MCGRYFFDLSSNELKNYYDQVTPNATNTHVRIGYNEIFPSNHVVTLALNQESKIVPGITRWGFEGFKKGQLMINARSETVEEKKTFSKHFKETRCVFPMSGFYEWNQEKKKILFSAEDNDLLYVGGFYRIHKNGAGFETESVIMTTTPSKSVEPIHDRMPLIIKKNDINNWLSDIEFARNYLSTDMPELALSDAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040462_1	1.1\|180774\|49\|NZ_CP040462\|CRISPRCasFinder	180774-180822	49	NZ_CP040462	Enterococcus sp. M190262 plasmid pM190262, complete sequence	180774-180822	0	1.0

1. spacer 1.1|180774|49|NZ_CP040462|CRISPRCasFinder matches to NZ_CP040462 (Enterococcus sp. M190262 plasmid pM190262, complete sequence) position: , mismatch: 0, identity: 1.0

actttttttcatcattttataaaatgatgaaaaatccccctgaaaacct	CRISPR spacer
actttttttcatcattttataaaatgatgaaaaatccccctgaaaacct	Protospacer
*************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040461

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040462

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection