CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040465	Campylobacter hyointestinalis subsp. hyointestinalis strain S12 plasmid pCh1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP040464	Campylobacter hyointestinalis subsp. hyointestinalis strain S12 chromosome, complete genome	3 crisprs	cas9,cas1,cas2,cas3,WYL,DEDDh,cas4,cas5,cas7,cas8b1,c2c9_V-U4	1	20	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040464_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040464_1

99674-99793

Orphan

Consensus_repeat	Method
TTTAGATTTAGTTCTTTAGTACGAATTTATTCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040464_1

>merge|NZ_CP040464|1|99674-99793|CRISPRCasFinder
TTTAGATTTAGTTCTTTAGTACGAATTTATTCGTATAATTTAAAAGAATATAAATTTCTAAAGCGTGAGCAAAAGCGAACGGACTTTAGTATTTAGTTCTTTAGTACGAATTTATTCGTA

>NZ_CP040464|1|1|99674-99793|CRISPRCasFinder
TTTAGATTTAGTTCTTTAGTACGAATTTATTCGTA	TAATTTAAAAGAATATAAATTTCTAAAGCGTGAGCAAAAGCGAACGGACT
TTAGTATTTAGTTCTTTAGTACGAATTTATTCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040464.1\|WP_034963094.1\|96281_96638_+\|50S-ribosomal-protein-L18	unknown	unknown	gnl\|CDD\|235524
NZ_CP040464.1\|WP_059426546.1\|96652_97096_+\|30S-ribosomal-protein-S5	unknown	unknown	gnl\|CDD\|234790
NZ_CP040464.1\|WP_034963090.1\|95228_95624_+\|30S-ribosomal-protein-S8	unknown	unknown	gnl\|CDD\|234658
NZ_CP040464.1\|WP_059426549.1\|102779_103136_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_CP040464.1\|WP_002848031.1\|99828_100047_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP040464.1\|WP_034963100.1\|98771_99530_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP040464.1\|WP_002848032.1\|100206_100320_+\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179039
NZ_CP040464.1\|WP_034963107.1\|101121_101748_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NZ_CP040464.1\|WP_034963093.1\|95735_96272_+\|50S-ribosomal-protein-L6	unknown	unknown	gnl\|CDD\|235495
NZ_CP040464.1\|WP_059426547.1\|97506_98769_+\|preprotein-translocase-subunit-SecY	unknown	unknown	gnl\|CDD\|236412
NZ_CP040464.1\|WP_034963097.1\|97105_97507_+\|50S-ribosomal-protein-L15	unknown	unknown	gnl\|CDD\|235523
NZ_CP040464.1\|WP_034963106.1\|100701_101094_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NZ_CP040464.1\|WP_138297573.1\|104127_105432_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NZ_CP040464.1\|WP_059426550.1\|103336_103603_+\|NifU-family-protein	unknown	unknown	gnl\|CDD\|376458
NZ_CP040464.1\|WP_034963088.1\|95032_95218_+\|type-Z-30S-ribosomal-protein-S14	unknown	unknown	gnl\|CDD\|181216
NZ_CP040464.1\|WP_059426551.1\|103592_104144_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040464.1\|WP_034963109.1\|101760_102759_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NZ_CP040464.1\|WP_034963084.1\|94252_94486_+\|50S-ribosomal-protein-L24	unknown	unknown	gnl\|CDD\|183399
NZ_CP040464.1\|WP_034963086.1\|94488_95031_+\|50S-ribosomal-protein-L5	unknown	unknown	gnl\|CDD\|178791
NZ_CP040464.1\|WP_034963104.1\|100323_100692_+\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358

Protein	Function_ID	Function_description	E-value
NZ_CP040464.1\|WP_034963094.1\|96281_96638_+\|50S-ribosomal-protein-L18	gnl\|CDD\|235524	PRK05593, rplR, 50S ribosomal protein L18; Reviewed.	4.9035e-46
NZ_CP040464.1\|WP_059426546.1\|96652_97096_+\|30S-ribosomal-protein-S5	gnl\|CDD\|234790	PRK00550, rpsE, 30S ribosomal protein S5; Validated.	3.65962e-84
NZ_CP040464.1\|WP_034963090.1\|95228_95624_+\|30S-ribosomal-protein-S8	gnl\|CDD\|234658	PRK00136, rpsH, 30S ribosomal protein S8; Validated.	2.43149e-70
NZ_CP040464.1\|WP_059426549.1\|102779_103136_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	3.10791e-62
NZ_CP040464.1\|WP_002848031.1\|99828_100047_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	1.98936e-46
NZ_CP040464.1\|WP_034963100.1\|98771_99530_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	4.94979e-141
NZ_CP040464.1\|WP_002848032.1\|100206_100320_+\|50S-ribosomal-protein-L36	gnl\|CDD\|179039	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed.	4.10973e-12
NZ_CP040464.1\|WP_034963107.1\|101121_101748_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	1.15849e-118
NZ_CP040464.1\|WP_034963093.1\|95735_96272_+\|50S-ribosomal-protein-L6	gnl\|CDD\|235495	PRK05498, rplF, 50S ribosomal protein L6; Validated.	3.49556e-96
NZ_CP040464.1\|WP_059426547.1\|97506_98769_+\|preprotein-translocase-subunit-SecY	gnl\|CDD\|236412	PRK09204, secY, preprotein translocase subunit SecY; Reviewed.	0
NZ_CP040464.1\|WP_034963097.1\|97105_97507_+\|50S-ribosomal-protein-L15	gnl\|CDD\|235523	PRK05592, rplO, 50S ribosomal protein L15; Reviewed.	5.75225e-50
NZ_CP040464.1\|WP_034963106.1\|100701_101094_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	9.95571e-75
NZ_CP040464.1\|WP_138297573.1\|104127_105432_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	8.40626e-167
NZ_CP040464.1\|WP_059426550.1\|103336_103603_+\|NifU-family-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	9.69743e-25
NZ_CP040464.1\|WP_034963088.1\|95032_95218_+\|type-Z-30S-ribosomal-protein-S14	gnl\|CDD\|181216	PRK08061, rpsN, type Z 30S ribosomal protein S14.	5.47809e-34
NZ_CP040464.1\|WP_034963109.1\|101760_102759_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.3425e-133
NZ_CP040464.1\|WP_034963084.1\|94252_94486_+\|50S-ribosomal-protein-L24	gnl\|CDD\|183399	PRK12281, rplX, 50S ribosomal protein L24; Reviewed.	6.36517e-28
NZ_CP040464.1\|WP_034963086.1\|94488_95031_+\|50S-ribosomal-protein-L5	gnl\|CDD\|178791	PRK00010, rplE, 50S ribosomal protein L5; Validated.	1.67904e-112
NZ_CP040464.1\|WP_034963104.1\|100323_100692_+\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	7.33217e-75

>NZ_CP040464.1|WP_034963100.1|98771_99530_+|type-I-methionyl-aminopeptidase
MAISIKTAKDIEGLRAANKIVAQVLDHMHEFIKPGLSLLEIDKVCEDMIRSAGAKPAFKGLYGFPTAACISVNEVVIHGIPNEYKLKEGDIVSIDIGSNLKGYFGDSARTYPVGKISANDEALISCSKDALYFAIDYIKVGMHFKEVCSAVEEFIIDRGFVPLRGFCGHGIGKRPHEEPEIPNYLEGNNPKSGPKIRNGMVFCIEPMICQKDGTPVIAKDNWTVTSKDGLRTSHYEHCLAMVDGKVEILSQI
>NZ_CP040464.1|WP_059426547.1|97506_98769_+|preprotein-translocase-subunit-SecY
MNKTLINKILITLGFLFAYRVLAYVPVPGVNIDVIKEFFTSNSSNALGMFNMFSGGAAERLSIISLGIMPYITSSIIMELLAATFPNLGKMKKERDGMQKYMQIIRYVTIVITVVQAIGVSIGLQSLTGRGGEQAIMIDINLFIAISCASMLTGTMLLMWIGEQITQRGIGNGISLIIFAGIVSGIPNAIGGTINLVNTGEMNFLVVIGIALVILITVGIVIFVEMGERRVPISYSRKTVMQNQNKRIMNYIPIKVNLSGVIPPIFASAILMFPSTILQASTNEFILAINDFLNPNSYFFNFLTFLFILFFAYFYASITFNAKDISENLKRQGGFIPGVRPGESTATYLNEVASRLTFTGSIYLGLISTLPWILVKFMGVPFYFGGTSVLIVVSVALDTMRKIEAQIYMNKYQTLSAVGL
>NZ_CP040464.1|WP_034963097.1|97105_97507_+|50S-ribosomal-protein-L15
MGLENLQKAAGSTRNTKRIGRGQGSGWGKTATKGGKGQTARKGYNEKRGFEGGQQPLQRRLPKVGFDSKFVKPYAINVDKNESIKTLSEITLDSLKTVHKFSNSIQKVKLIGAGAKDLASKIKDENITVTGIN
>NZ_CP040464.1|WP_059426546.1|96652_97096_+|30S-ribosomal-protein-S5
MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVVVGDKKGHVGFGFGKAKEVPDAMRKAVDDAFKNIVEVKLKGSTIPHDIEVKFNASRILLKPASEGTGVIAGGGARPVVELAGIKNILTKSLGSNNSANVVRATIKALSMLKA
>NZ_CP040464.1|WP_034963094.1|96281_96638_+|50S-ribosomal-protein-L18
MVANILKRKISLRIKRKRRIRAKINGTASCPRISIFKSNRTIYVQAIEDINATTLCASDGRKLGIKANKEGAVILAKDIAGKLSAKGINEAVFDRNGYLYHGVVAAFAEALRENGIKL
>NZ_CP040464.1|WP_034963093.1|95735_96272_+|50S-ribosomal-protein-L6
MSRIGKQPISIPNGLDVSLNGDVLVFKKGNLTKELDTKNNVNVEVKDGHIVFTSKGDDRQSRAYWGTYRSLANNIVIGLTAGFTKQLEINGVGYKAAAKGKVLELALGFSHPINYELPEGIEVSVEKNVVTIKGSDKQVVGQVAAEVRGFRPPEPYKGKGVKYVEERIIRKAGKTSKK
>NZ_CP040464.1|WP_034963090.1|95228_95624_+|30S-ribosomal-protein-S8
MINDLISDGLTRIRNASMRRLDTTKLLHSNVVEATLKILADKGYIESYNVVEEGNKKFINVVLKYDERGRSVINELKRVSKPGRRVYQGKDEIKRFKNGYGTIIVSTSKGVLSNDEAHKIGVGGEVLCTVW
>NZ_CP040464.1|WP_034963088.1|95032_95218_+|type-Z-30S-ribosomal-protein-S14
MAKKSMIAKAARAPKFSSRGYTRCQICGRPHSVYKDFGICRVCLRKMANEGLIPGLKKASW
>NZ_CP040464.1|WP_034963086.1|94488_95031_+|50S-ribosomal-protein-L5
MRLKAKYNESIKPALVKEFDIKNPMLIPALEKIVISVGAGEGAKDQKLLQNMADTISLIAGQKAVVTNAKKSVAGFKVREGFPVGIKVTLRKERMYAFLDKLISVALPRVKDFRGLPRDGFDGRGNYNFGLNEQLMFPEVVYDQILRTHGMNITVVTTANDDKQAFKLLELFGVPFAKGK
>NZ_CP040464.1|WP_034963084.1|94252_94486_+|50S-ribosomal-protein-L24
MAIKYKIKKGDEVKVIAGDDKGKVAKVLAVLPKKGQVIVEGVKVAKKAVKPTDKNPNGGFVSKEMPIDISNVAKVEG
>NZ_CP040464.1|WP_002848031.1|99828_100047_+|translation-initiation-factor-IF-1
MAKDDVIEIDGNVVEALPNATFKVELDNKHIILCHIAGKMRMHYIKIMPGDRVKVELTPYSLDKGRITYRYK
>NZ_CP040464.1|WP_002848032.1|100206_100320_+|50S-ribosomal-protein-L36
MKVRPSVKKMCDKCKIVKRKGIVHVICENPKHKQRQG
>NZ_CP040464.1|WP_034963104.1|100323_100692_+|30S-ribosomal-protein-S13
MARIAGVDLPKKKRVEYGLTYIYGIGLFSSRKILDAVGISYDKRVYELSEDEAAAIRKEIQEHYMVEGDLRKSVAMDIKALMDLGSYRGLRHRKGLPVRGQKTKTNARTRKGRRKTVGAATK
>NZ_CP040464.1|WP_034963106.1|100701_101094_+|30S-ribosomal-protein-S11
MAKRKVIKKKVVRKNIAKGIVYISATFNNTMVTVTDEMGNAIAWSSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSIGAVEGIKVLYLKDITPLAHNGCRPPKRRRV
>NZ_CP040464.1|WP_034963107.1|101121_101748_+|30S-ribosomal-protein-S4
MARYRGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQRKTKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARRDGNTGALLVSLLEQRLDNVVYRMGFATTRRFARQLVTHGHILVNGKRVDIPSYRVAAGEKIEVAEKSKANPQIVRAIELTNQTGIVAWVDVEKDKKYGIFTRIPEREEVVIPVEERYIVELYSK
>NZ_CP040464.1|WP_034963109.1|101760_102759_+|DNA-directed-RNA-polymerase-subunit-alpha
MRKITTSAYMPTEIEVVNVSENVAKIIAYPFETGYAVTLAHPLRRLLYTSTVGFAPTGVKIEGVAHEFDSMRGMLEDVTLFIINLKNLRFKLKNNSQREVIEYNFKGPKEITGSDLNNDIVEIVNPDAYLATINEDADFKFSVIIEKGIGYVPSEEIRDYIEPDYIALDAFFTPVKKAVYEIENVLVEDNPDYEKIVLTVTTDGQVGPVEAFKHSIEAMYKQMSVFNNVLNIDVNVALSSSVGSNEHSKLFESVENLNLSARSFNCLDKAEIRYIGELALMEESELKELKNLGKKSLDEIKAVMAEIGYPFGENTLGDSKEMLRKKIAELKS
>NZ_CP040464.1|WP_059426549.1|102779_103136_+|50S-ribosomal-protein-L17
MRHNHGYRKLGRTSSHRAALLKNLTIAIVKAGKIETTLPKAKELRGYVEKLITRARKGDFNAHKFVFAALQDKEATNKLVTEIAPKYATRNGGYTRIIKTRVRKGDAAEMAYIELVSE
>NZ_CP040464.1|WP_059426550.1|103336_103603_+|NifU-family-protein
MIPFSDEELLEPVKQSLDTVRPMLERDGGGMDLLGIKNGVVYVRLTGHCHGCAASSQTLKYGVERQLKLDIHPELSVVNIPIGEKFEL
>NZ_CP040464.1|WP_059426551.1|103592_104144_+|hypothetical-protein
MSYKISYKQLGIELFRKYKFDEAKSCFSLAYEEEKSEELLSFIDLCELAKTEPDEVMSLFEIYINLKLPDQEKEINKIINILEENSNQFIKELDYENAITYSDFKKLVSEQGNFKTIFQDIMFSTKVIISDKNDLLEFVENLIKNGYKEMGLNYLENSSAIFLGDQRVEKIIKDLGKSNENNA
>NZ_CP040464.1|WP_138297573.1|104127_105432_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MKITLKNGNFITDNSKDCTFGCYFALSNSNAKFENVAKSLGAKIITPKEAKTLLGLDDSIKLVGITGTNGKTTTASAIYETLLNLGFKAGISGTRGAFINGKQIADKGLTTSQILETLNYLKLSKEAGCEYFVMEVSSHAIAQDRIEGLKFALKIFTNLSQDHLDFHKTIEEYARVKSSFFKDITPKLINGDDKNLSYDKINSMTYGFTSDATFYAFDYSLKGGINATIKTNGEEIKFQSSLQGKFNLYNLLCAFGALKFLTKKSSDEISKALSKFSGAPGRVEIVSRNPLVIVDFAHTPDGIEKVLDALKDEELIVVFGAGGDRDKTKRSVMGQIVQKYAKIAIVTSDNPRSEEPSSIIEDIVSKIELGDNIIKEVDRKKAINLALNLAKNGEAVVILGKGDEPYQEIKSVKYPFSDKDVVRDILNLNNKGNI

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Crispr_ID: NZ_CP040464_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040464_2

1171550-1173149

TypeI-B

Consensus_repeat	Method
GTTTCAAATCCTAAAAGGATAAATTTATAC	PILER-CR
GTTTCAAATCCTAAAAGGATAAATTTATAC	CRISPRCasFinder
GTTTCAAATCCTAAAAGGATAAATTTATAC	CRT

24 spacers

The CRISPR arrays of NZ_CP040464_2

>merge|NZ_CP040464|2|1171550-1173149|PILER-CR,CRISPRCasFinder,CRT
GTTTAAAATCCTAAAAGGATAAATTTATACAACATTACACCAGCGACATCAGTTGCAAGATCAAATCTGTTTCAAATCCTAAAAGGATAAATTTATACGTTTATGATCTCTATCGTATCGTTCTCATCACGGAGTTTCAAATCCTAAAAGGATAAATTTATACGCTTGGCTTGACGCTCAAGAGCAAAAAGCAAAAAAGTTTCAAATCCTAAAAGGATAAATTTATACAGCAACTTTTCAGATTAATACCATAGTGAAATTGTTTCAAATCCTAAAAGGATAAATTTATACTTCAAGCCAAAGTATATCAAGGGCGAACCTCTGCAGTTTCAAATCCTAAAAGGATAAATTTATACCCCAAACCCAGTGACCATTTCAAATACACCTATACGTTTCAAATCCTAAAAGGATAAATTTATACAAAAGCCTTGGAAAACACTACAGGCTCGACGTGATTTTTGTTTCAAATCCTAAAAGGATAAATTTATACTCAAGGCATCAAATGAACAATAGAGCAGCAAGACGTTTCAAATCCTAAAAGGATAAATTTATACTCTGTTTATTTATCGTCTGATGCTGATAGATAAAAGTTTCAAATCCTAAAAGGATAAATTTATACCCCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTAGTTTCAAATCCTAAAAGGATAAATTTATACTGAAATAGCTAAGTTCGACTAGATTATTATTTATTCGTTTCAAATCCTAAAAGGATAAATTTATACAAAACCAAACCACGTTTTTAAGGCTATTTAAACAGTTTCAAATCCTAAAAGGATAAATTTATACTTCAAAGGGGAAGGTAAAATGGTTTTTTGATTATCGTTTCAAATCCTAAAAGGATAAATTTATACCATAATCACAAAAATTCGTAGAGAATTTGGCGATGAAAGTTTCAAATCCTAAAAGGATAAATTTATACCCTAGGCACCCCTCAAACAGAGGAGAGTATCTATAAGTTTCAAATCCTAAAAGGATAAATTTATACATGCTCAAACTCAGCAACAAAGCAATTATAGCTAGTTTCAAATCCTAAAAGGATAAATTTATACGTTATCGGAGAGAATGAATTTGCAAAGGTAATATAGTTTCAAATCCTAAAAGGATAAATTTATACCGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAAAAGTTTCAAATCCTAAAAGGATAAATTTATACCTATTATTTTTAGCCCTTTTGCTTTATTATCATCAGTTTCAAATCCTAAAAGGATAAATTTATACATTGCAAGATTTTTACCTATGCCTTTCTCATTTGCGTTTCAAATCCTAAAAGGATAAATTTATACTTGATTATAAACTTAGTTGCAATTAGTTCTTATTGTTTCAAATCCTAAAAGGATAAATTTATACCGCCGCTTTTAAATCAGATTGATAATGTCTTTTAGTTTCAAATCCTAAAAGGATAAATTTATACTCTCATTATCTTTTTCAAGATTATTAATTGTATTATGTTTCAAATCCTAAAAGGATAAATTTATACTAGAGTTTCAAGTTTAATACTACTATTTTTAATTTCGTTTCAAATCCTAAAAGGATAAATTTATAC

>NZ_CP040464|2|1|1171550-1173149|PILER-CR
GTTTAAAATCCTAAAAGGATAAATTTATAC	AACATTACACCAGCGACATCAGTTGCAAGATCAAATCT
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTTATGATCTCTATCGTATCGTTCTCATCACGGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GCTTGGCTTGACGCTCAAGAGCAAAAAGCAAAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGCAACTTTTCAGATTAATACCATAGTGAAATT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCAAGCCAAAGTATATCAAGGGCGAACCTCTGCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCAAACCCAGTGACCATTTCAAATACACCTATAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAAGCCTTGGAAAACACTACAGGCTCGACGTGATTTTT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCAAGGCATCAAATGAACAATAGAGCAGCAAGAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCTGTTTATTTATCGTCTGATGCTGATAGATAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGAAATAGCTAAGTTCGACTAGATTATTATTTATTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAACCAAACCACGTTTTTAAGGCTATTTAAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCAAAGGGGAAGGTAAAATGGTTTTTTGATTATC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATAATCACAAAAATTCGTAGAGAATTTGGCGATGAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCTAGGCACCCCTCAAACAGAGGAGAGTATCTATAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATGCTCAAACTCAGCAACAAAGCAATTATAGCTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTATCGGAGAGAATGAATTTGCAAAGGTAATATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTATTATTTTTAGCCCTTTTGCTTTATTATCATCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATTGCAAGATTTTTACCTATGCCTTTCTCATTTGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTGATTATAAACTTAGTTGCAATTAGTTCTTATT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGCCGCTTTTAAATCAGATTGATAATGTCTTTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCTCATTATCTTTTTCAAGATTATTAATTGTATTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TAGAGTTTCAAGTTTAATACTACTATTTTTAATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC

>NZ_CP040464|2|2|1171550-1173149|CRISPRCasFinder
GTTTAAAATCCTAAAAGGATAAATTTATAC	AACATTACACCAGCGACATCAGTTGCAAGATCAAATCT
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTTATGATCTCTATCGTATCGTTCTCATCACGGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GCTTGGCTTGACGCTCAAGAGCAAAAAGCAAAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGCAACTTTTCAGATTAATACCATAGTGAAATT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCAAGCCAAAGTATATCAAGGGCGAACCTCTGCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCAAACCCAGTGACCATTTCAAATACACCTATAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAAGCCTTGGAAAACACTACAGGCTCGACGTGATTTTT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCAAGGCATCAAATGAACAATAGAGCAGCAAGAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCTGTTTATTTATCGTCTGATGCTGATAGATAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGAAATAGCTAAGTTCGACTAGATTATTATTTATTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAACCAAACCACGTTTTTAAGGCTATTTAAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCAAAGGGGAAGGTAAAATGGTTTTTTGATTATC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATAATCACAAAAATTCGTAGAGAATTTGGCGATGAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCTAGGCACCCCTCAAACAGAGGAGAGTATCTATAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATGCTCAAACTCAGCAACAAAGCAATTATAGCTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTATCGGAGAGAATGAATTTGCAAAGGTAATATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTATTATTTTTAGCCCTTTTGCTTTATTATCATCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATTGCAAGATTTTTACCTATGCCTTTCTCATTTGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTGATTATAAACTTAGTTGCAATTAGTTCTTATT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGCCGCTTTTAAATCAGATTGATAATGTCTTTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCTCATTATCTTTTTCAAGATTATTAATTGTATTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TAGAGTTTCAAGTTTAATACTACTATTTTTAATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC

>NZ_CP040464|2|1|1171550-1173149|CRT
GTTTAAAATCCTAAAAGGATAAATTTATAC	AACATTACACCAGCGACATCAGTTGCAAGATCAAATCT
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTTATGATCTCTATCGTATCGTTCTCATCACGGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GCTTGGCTTGACGCTCAAGAGCAAAAAGCAAAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGCAACTTTTCAGATTAATACCATAGTGAAATT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCAAGCCAAAGTATATCAAGGGCGAACCTCTGCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCAAACCCAGTGACCATTTCAAATACACCTATAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAAGCCTTGGAAAACACTACAGGCTCGACGTGATTTTT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCAAGGCATCAAATGAACAATAGAGCAGCAAGAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCTGTTTATTTATCGTCTGATGCTGATAGATAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGAAATAGCTAAGTTCGACTAGATTATTATTTATTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAACCAAACCACGTTTTTAAGGCTATTTAAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCAAAGGGGAAGGTAAAATGGTTTTTTGATTATC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATAATCACAAAAATTCGTAGAGAATTTGGCGATGAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCTAGGCACCCCTCAAACAGAGGAGAGTATCTATAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATGCTCAAACTCAGCAACAAAGCAATTATAGCTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTATCGGAGAGAATGAATTTGCAAAGGTAATATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTATTATTTTTAGCCCTTTTGCTTTATTATCATCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATTGCAAGATTTTTACCTATGCCTTTCTCATTTGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTGATTATAAACTTAGTTGCAATTAGTTCTTATT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGCCGCTTTTAAATCAGATTGATAATGTCTTTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCTCATTATCTTTTTCAAGATTATTAATTGTATTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TAGAGTTTCAAGTTTAATACTACTATTTTTAATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040464.1\|WP_138297686.1\|1163359_1164628_-\|DUF945-family-protein	unknown	unknown	gnl\|CDD\|377603
NZ_CP040464.1\|WP_059430765.1\|1183846_1184641_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP040464.1\|WP_059430776.1\|1169389_1170733_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP040464.1\|WP_034963926.1\|1184941_1185949_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP040464.1\|WP_059430766.1\|1179444_1180002_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040464.1\|WP_059430774.1\|1173421_1174516_-\|DUF4405-domain-containing-protein	unknown	unknown	gnl\|CDD\|378226
NZ_CP040464.1\|WP_059427778.1\|1167973_1168519_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP040464.1\|WP_059430772.1\|1176203_1176446_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP040464.1\|WP_059426755.1\|1184624_1184939_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP040464.1\|WP_059430777.1\|1168518_1169403_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP040464.1\|WP_059429845.1\|1155565_1156006_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NZ_CP040464.1\|WP_104151483.1\|1176432_1177284_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|316042
NZ_CP040464.1\|WP_059430778.1\|1165807_1167361_-\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NZ_CP040464.1\|WP_059426758.1\|1175033_1175447_-\|DUF1924-domain-containing-protein	unknown	unknown	gnl\|CDD\|378118
NZ_CP040464.1\|WP_059430779.1\|1165204_1165798_-\|lipid-binding-SYLF-domain-containing-protein	unknown	unknown	gnl\|CDD\|211400
NZ_CP040464.1\|WP_059427777.1\|1167293_1167923_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NZ_CP040464.1\|WP_059426757.1\|1183344_1183761_-\|histidine-phosphotransferase	unknown	unknown	gnl\|CDD\|223716
NZ_CP040464.1\|WP_059434799.1\|1174508_1175024_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|378226
NZ_CP040464.1\|WP_034963891.1\|1164632_1165196_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP040464.1\|WP_059430775.1\|1170884_1171088_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040464.1\|WP_138297686.1\|1163359_1164628_-\|DUF945-family-protein	gnl\|CDD\|377603	pfam06097, DUF945, Bacterial protein of unknown function (DUF945). This family consists of several hypothetical bacterial proteins of unknown function.	4.8393e-09
NZ_CP040464.1\|WP_059430765.1\|1183846_1184641_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	3.13381e-142
NZ_CP040464.1\|WP_059430776.1\|1169389_1170733_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP040464.1\|WP_034963926.1\|1184941_1185949_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP040464.1\|WP_059430774.1\|1173421_1174516_-\|DUF4405-domain-containing-protein	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	2.25382e-49
NZ_CP040464.1\|WP_059427778.1\|1167973_1168519_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.07772e-28
NZ_CP040464.1\|WP_034963891.1\|1164632_1165196_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.74152e-29
NZ_CP040464.1\|WP_059430772.1\|1176203_1176446_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.09952e-07
NZ_CP040464.1\|WP_059426755.1\|1184624_1184939_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.44825e-14
NZ_CP040464.1\|WP_104151483.1\|1176432_1177284_+\|ATP-binding-protein	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	7.06955e-10
NZ_CP040464.1\|WP_059429845.1\|1155565_1156006_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	1.05534e-17
NZ_CP040464.1\|WP_059430778.1\|1165807_1167361_-\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NZ_CP040464.1\|WP_059426758.1\|1175033_1175447_-\|DUF1924-domain-containing-protein	gnl\|CDD\|378118	pfam09086, DUF1924, Domain of unknown function (DUF1924). This domain is found in a set of bacterial proteins, including Cytochrome c-type protein. It is functionally uncharacterized.	1.30649e-39
NZ_CP040464.1\|WP_059430779.1\|1165204_1165798_-\|lipid-binding-SYLF-domain-containing-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	7.19723e-39
NZ_CP040464.1\|WP_059427777.1\|1167293_1167923_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	8.8425e-23
NZ_CP040464.1\|WP_059426757.1\|1183344_1183761_-\|histidine-phosphotransferase	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.01908e-09
NZ_CP040464.1\|WP_059434799.1\|1174508_1175024_-\|cytochrome-C	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	2.87258e-53
NZ_CP040464.1\|WP_059430777.1\|1168518_1169403_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	3.64189e-141

>NZ_CP040464.1|WP_059430775.1|1170884_1171088_-|hypothetical-protein
MESIYKTILELIAHTFITIILLVFAFVLGFVAYFFFGGAAMFYTTLGVFFTLFMLFVVGLALYSLKS
>NZ_CP040464.1|WP_059430776.1|1169389_1170733_+|DNA-repair-protein-RadA
MAKTKTIFECEACGNQQSKWMGKCPGCGAWESFVELSSEQIKVINEISKISNSPSSKAKAITDIKIEEISRRTTGDVELDIVLGGGLVDGSLVLIGGSPGIGKSTLLLKIASNLAEFGENVLYVSGEESESQIKLRANRLNANSKNLYLLTEINLDNILAEISKKEYKTLVVDSIQTLYSDKISSAPGSVSQVREITFELMRLAKSKNICVFIIGHITKEGSIAGPRILEHMVDVVLYFEGDSSMELRLLRGFKNRFGSTSEVGIFEMSKFGLISAKDATSKFFTRGDAVSGSAITVTMEGSRALIVEIQALVCESSYPKRSSTGFDKNRLDMILALLERKLEIPLGHYDVFINVTGGVKINETACDLAVVAAIISSFRNRPISKESIFIGELSLNGEIRDIFNLDARLKEASMQKFKNIIAPSKPIEKSNLKIFVAKEISQVIEWM
>NZ_CP040464.1|WP_059430777.1|1168518_1169403_+|signal-recognition-particle-docking-protein-FtsY
MFDFLKKGLEKTISSITSNKPKDKKITKDILEELLLEADVPFEIVEEIVYYLPPRDLVDRADLARVMETYFLYDNPNDLETKPFVQMIIGVNGAGKTTTIAKLANLYKNSGRSVILGASDTFRAGAIEQLRQWATRLNVPIIATAQGHDPAAVAFDTISSAVAKDYDNVIIDTAGRLQNQKNLANELEKIVRISSKALASAPHQKIIVLDGTQGNAALAQAKAFNEIINLDGVIITKLDGTSKGGALLGIARELELPILYIGVGEQMDDIIKFDPKDFVKTICDAIYLDNDGKN
>NZ_CP040464.1|WP_059427778.1|1167973_1168519_+|TlpA-family-protein-disulfide-reductase
MKLKSLIIACLLIFMYGCSKNDKSEDTTPISSSMSENYDRSFTLTLNDGKNLNMQRNSEGFDIEDNNKAVLFTFFTTWCPPCKAEIPHLVSLQDKFKNELRIIGVLMEERTADEISEFIKMYNINYRVAYGESNFFFAKALGEVVGIPYSVLYYPNGKYATHYIGLVPEEMLESDIKKVIS
>NZ_CP040464.1|WP_059427777.1|1167293_1167923_-|5-formyltetrahydrofolate-cyclo-ligase
MGVKFSKTEYRKIVKSSLNKIVKFRAKSFSYKIHKTLLYIFDKFKSKNILLFLPLLYEPNLVILRRRLIKSHNIFLPFMVDKSLKMVKLRLPFNESKFGVKEANDSNAFFGRIDVAVIPVIGVDGNMARIGHGFGYYDRFFDTLAYKPVVIFVQIEDFYTKEKICDSHDIKCDFYITPRKNYIKKGNYDRDFYRAHCRGSRRWSRVFCS
>NZ_CP040464.1|WP_059430778.1|1165807_1167361_-|ribonuclease-Y
MIEIFIGLTAAAAGAGAGYFAAKKINDANYNVFLEQAKAKAKAIEFEAESILKDAKVKVSEAEFEAKKRYEEKGSKLQKEFNQKFDEIAKKEQVLLSEHEILKNSKEELEKSRNEAKTLYEEGLNLKATYQDKLSEALRVLEHSAGLTEEEAREVVLKKVEEKSRADIAHIVRKYEEEAKREAKKRVNYILAQATSRYAGEFAAERLINVVNIKNDELKGRIIGKEGRNIKTLEMVLGVDVIIDDTPHAIVLSSFNLYRRAIATRVIELLVEDGRIQPARIEELHKKVCDEFEESILEEGENILIDLGISKVHPEIVKLIGKLKFRASYGQNALAHSLEVAHLAGIIAAETGGDEKLAKRAGILHDIGKALTHEYEGSHVDLGAEICKRYKEHPVVINAIYAHHGHEEALSVECAAVCAADALSAARPGARREVLESFLKRVEEIENIATSKEGIKGAYAINAGREIRVIANAKLVNDDEAVLLAKEIADEIQEKVQFPGEIKVNVIRELRAIEFAK
>NZ_CP040464.1|WP_059430779.1|1165204_1165798_-|lipid-binding-SYLF-domain-containing-protein
MKKIFLILALFCSFVFCDDELLLDSANAYKVVLKANSGIPASSLVEKSSAVVILPKFVKAGFIIGGSIGKGVMMVKNADSWMPIGVKMGGGSLGFQIGYEDSYLVIFVLKNSIVQDIKDAKFTISADASASFNNVGAKAGKLSDFTFSDDIYAYSNNSGYFAGAKLGGSVISVDKKMKFDTNSYGFNALIEALNVSF
>NZ_CP040464.1|WP_034963891.1|1164632_1165196_-|DedA-family-protein
MQDMLNSLSTYGYIILFFYSLGGGMVAIIAAGLLSYIGKLDLWVCISIAAIANFIGDMILFYLGRYNKSSILPYFKSHKRKLALAQILFKRYGDKIIFIKKYIYGLKTLVPIAIGITKYSMNKFIVINAICSVVWAVSLGILSYKAGDFLQKIMNYFGDNTFIIPVMMVALLVLIWFYFSLATKKVR
>NZ_CP040464.1|WP_138297686.1|1163359_1164628_-|DUF945-family-protein
MMKKTVIFIVLLIICALATQFSVWWFFQKNSKSVLLNLQSDEYINVLDKNFSSGFFKFDSFIDIELKNNNLKEIFNANEFIKIRLNLSGKQDVFSAFSTGYITVLNSPYIDFVRSIFGDEKFINLNTYFKFNGDSVVDTYILPAKFKYNDLSIDISSAKLSAIISKDMIKDVNATLDYAKFSIDDMQANITNLSYAIKPKIPINIMNIDKTALTDANTTTKISKIDIVSNFVNLYFDDISSFWQVSSQDDTAWFVNDLNIKNIDILGVKFKNFNFLSNAQNIDKISYQNIIYGLKKSSYYDINNEILHIMRKNPRFNIEKFSFENTNGDKFTLDCSFWIDSSSNIANFDEIEERIKFAGNLELTNSLSSFLPLFPFLAMYEDKLVEAGILIKTPNSYKAKFKISDDNKDIIFNDVNILSNFL
>NZ_CP040464.1|WP_059429845.1|1155565_1156006_-|helix-hairpin-helix-domain-containing-protein
MRLFGLIALLASLTYAAVNLNTATKEELMELPGIGEAKANAIIEYRSKNKFNSIEDIKNIKGIGDKRYEAIKADLTTSGNTDLSNLKTKANNKTKDIKKNSDKIKELKNNKNKEINKENNKNKKEIKDKKVKIKKDINDKVDSLKE
>NZ_CP040464.1|WP_059430774.1|1173421_1174516_-|DUF4405-domain-containing-protein
MIKSYIWSFGARFSHIVLIFSFIISYILSEFDSLLYFHAAFGVVFGVAVIFRIVWGFIGTKHSKFSDFKFYGLMAYFRSFFGKKEKFIGHNPASSIAIIIMLSLGFVCAVSGLMLYAIDKNSGIFAFLYDSYSELKFVKSIHEVSANLLLIVAIIHICGALIDKLIHKNDALNSMITGYKLTKNDESVRANLTQKIFCLVWILAIIATFLYILNRDNFILKSHALKVDYSSQNAVFAKECGSCHMLYPPFLLPKKSWGIMMSGLENHFGTDASIDDDTNKNILNFLVANSAQTRGDKTAFNILKYAKNDQNIAITQNEYWIKKHRKIDEKVFLRKDVKSKANCVACHKEIENGIIGLIDYEKIK
>NZ_CP040464.1|WP_059434799.1|1174508_1175024_-|cytochrome-C
MKFLLFVCIAILGLYAKGDGVRGGLDVKPVDNELYKKECASCHFGYQPGLMPTQSWEFIMKNLADHYGTDASIDDETNKSILSYLLANSSQNAMNYKRSAKITKSLENGVLYQSITDIPYHIKKHKKIEKWMITQKEVKTLSNCTACHKKAELGIYGKKSIDIPNYGAWRD
>NZ_CP040464.1|WP_059426758.1|1175033_1175447_-|DUF1924-domain-containing-protein
MKKIALLFLCAYALNAAQFNAAMQEYIAELKSEALKLDPNFKDFDAAKGELIFVTKNIGKNSQNISCQSCHGEDLTKESMNIFTNKTIAPLSPNANSSRLSDVKEVKKWLKRNFKDVYLREGTAIEKGDVLYYLIKQ
>NZ_CP040464.1|WP_059430772.1|1176203_1176446_+|helix-turn-helix-domain-containing-protein
MYITDIESDEFMTPTQLKRMLGISIPTQTKMRARQGCFANDKNPLPFIKLGARVLYRKSSIDEWIKANENKGSKKGNENE
>NZ_CP040464.1|WP_104151483.1|1176432_1177284_+|ATP-binding-protein
MKMNNIMGGLPPHKNSNDIITSLSKSAIKITSKRLKIFYQECLIPNFLYKNSLVMVYASAGSGKSWFAYSLCNLLLKLHSNITIRYLDADNGIRTLKNRNIDIVLKDSKFNAYQINGSKDFDIFKKLKKCNLKDEIIIIDSIRNFMSHVNLISDKEVMSFLNDLQEMRNSGGTIIFLHHQPKQINGENNKTYKGSTAFVDSVDEAYFLNNTSKNKQEFIICLEPQKCRDETKTTAFLLDTSKLDLKILDEKTTKFSVLNEKEQITINLVCEIINSSKKINQSN
>NZ_CP040464.1|WP_059430766.1|1179444_1180002_-|hypothetical-protein
MSKVIKRLETAIEKIEQIEKICNLKEVQKALEDELILKPAIMKHFDVIYQQFKKINDDQEYKILSKFDKDELRGLSEFKKWSLCDCDNIENEIIEDTIRNDLPNFKKNIQKVLQETKKELCKDLEKKVDYFTKKQDILMPEAKTDLAKTIEKEYKRLQESGVELDKSYSDKIKNIIKENSKENQR
>NZ_CP040464.1|WP_059426757.1|1183344_1183761_-|histidine-phosphotransferase
MGILKQLETDYDLDIVEDFLTHFDFMSSSLDPLIINLSRKEVCSGNLDEIFRIFHNIKSAAGFLKLEPLIKLATLCENILDEAKNQKDENSEASDEFIDWLLLVADQVETYRADIENDELYFHILNPKIINMPKRFFS
>NZ_CP040464.1|WP_059430765.1|1183846_1184641_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKKITISDLFAMKNKQKIVMITAYDALFAKLFDDYADMILVGDSLNMSFNGKNETIGLSVKEMIYHAKAVRTGSKRAFLVVDVPFGAIYSKKVALKNCIEIYKKTGCDAVKIEGGSEIKGIVKALSQNGVGVMGHIGLKPQLSRKEGGFKVAGRDEETAKKILDDALELELAGAGLLLLEGIPSELGKKITNSVKIPTIGIGAGSDTDGQVLVWSDAFGFFEEFKPKFVKRFLDGANLIRNAIQDYADEVRTKKFPSSEHEYTK
>NZ_CP040464.1|WP_059426755.1|1184624_1184939_+|rhodanese-like-domain-containing-protein
MNIPNNHIVDIRRPSEWMEFGVLEGSKLITFENLNGKINPMFLPLIEQNFKKDDEIVLMCHTALRSKAAMKFLQEKGYSNVKDIKGGAYYFEKMGAKFMPYSGE
>NZ_CP040464.1|WP_034963926.1|1184941_1185949_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MDRIVEIEKVSFESEYEVNLRPASFDDYIGQEKIKSNLKVFIAAAKKRSECLDHALFYGPPGLGKTTIAHIIASEMNTNIKITAAPMIEKSGDLAAILTNLEAGDVLFIDEIHRLSSAIEEVLYSAMEDFRLDIIIGSGPAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLQFYTPEELALIVSKASNKLGKNCQKEASLEIAKRSRGTPRIALRLLKRIRDFAEINDENNITKDRAKEALDSLGVNDLGFDEMDLKYLDILLDAKDRPLGLSTIAAALSEDEGTIEDVIEPYLLANGYIQRTAKGRTLSYKSFDTLGIKPSKGLFDE

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Crispr_ID: NZ_CP040464_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040464_3

1190837-1193694

Orphan

Consensus_repeat	Method
GTTTCAAATCCTAAAAGGATAAATTTATAC	PILER-CR
GTTTCAAATCCTAAAAGGATAAATTTATAC	CRISPRCasFinder
GTTTCAAATCCTAAAAGGATAAATTTATAC	CRT

43 spacers

The CRISPR arrays of NZ_CP040464_3

>merge|NZ_CP040464|3|1190837-1193694|PILER-CR,CRISPRCasFinder,CRT
GTTTCAAATCCTAAAAGGATAAATTTATACGTTTATGAAAATAAAATGTAAAGAAGTGTAAAGTGTTTCAAATCCTAAAAGGATAAATTTATACCTGAAATTGCCCCTACTAAGAGTTGCTATAAGACTAAGTTTCAAATCCTAAAAGGATAAATTTATACTACGGCGAGTTTGTAGATGGCTCGTCAAACCTACTGCGTTTCAAATCCTAAAAGGATAAATTTATACCATATACAAATTTACCAAACAATGAAAAACATAAAAGTTTCAAATCCTAAAAGGATAAATTTATACTGGAAACGCAATAGCAAGTAATTCACTAGCAATCACGTTTCAAATCCTAAAAGGATAAATTTATACAAAATGATAGAGATAATAGATGAATATAACCTATGTTTCAAATCCTAAAAGGATAAATTTATACTTAAATTTAATGATAAAGGAAATACCGATGAAAAAGAGTTTCAAATCCTAAAAGGATAAATTTATACCGAAGTTTTTAAAAATCTCAACCTAGAAGCTTTCAGGTTTCAAATCCTAAAAGGATAAATTTATACTTATTCTTTCAATCTCCGGCTTATTTTTTTTCATTTCGTTTCAAATCCTAAAAGGATAAATTTATACCCGTTGCCCCAAAACTAAAAGACAGTTTTTAAAAAAACGTTTCAAATCCTAAAAGGATAAATTTATACCATATTACCACTATTATCTACTATGTACCACATATGTTTCAAATCCTAAAAGGATAAATTTATACCCAACAGTACCAAGTGATTTAGACATAGCGGTATTGAAGTTTCAAATCCTAAAAGGATAAATTTATACATACTAGTCATGATAAGAACTCCGAAGAAGAGTTGTTTCAAATCCTAAAAGGATAAATTTATACTTATGTCAGCAGTGCCGACGCTCTCATTGGCGCTGGTTTCAAATCCTAAAAGGATAAATTTATACTTTGGCAAATAGTTAAGTAAATAAAACCAAATCAAAGTTTCAAATCCTAAAAGGATAAATTTATACGACAACTTGGAGCTTAGAAAACTTCATAAAAACCAGTTTCAAATCCTAAAAGGATAAATTTATACATCACGCTTGGGCTAGTTATCGTAGTAGCCTCAGCTAGTTTCAAATCCTAAAAGGATAAATTTATACAGAGTTCATAGATATGACTTTTCGAGAGTATGATAAGTTTCAAATCCTAAAAGGATAAATTTATACAATGGCAAAGGCTATCTTGGAGTTACAAAAAAACGTTTCAAATCCTAAAAGGATAAATTTATACCAAGCTGGAAATTCGCCCTAATTTGTTTCTCCCTGAAAGTTTCAAATCCTAAAAGGATAAATTTATACATATATAGTTTGGGATAAAAAAGAAGATGGCAAACCGTTTCAAATCCTAAAAGGATAAATTTATACTCGTTGGCTTTCTGTTCATCTGATAAATCGTAAGTCCGGTTTCAAATCCTAAAAGGATAAATTTATACTCAATATCTTTTATCTTGATTTCAAGTGGTTTTAGTTTCAAATCCTAAAAGGATAAATTTATACACTATAGTTTTGCTCTGCAACACCTTTGGATACAGTTTCAAATCCTAAAAGGATAAATTTATACCATTACAAAACTTACTCTAAAAGCAAAATATATGCGTTTCAAATCCTAAAAGGATAAATTTATACAAAACCAAACCACGTTTTTAAGGCTATTTAAACAGTTTCAAATCCTAAAAGGATAAATTTATACTGGTCAGATATCGACTTTGCAAGGAACTTGATAAATAGTTTCAAATCCTAAAAGGATAAATTTATACCCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTAGTTTCAAATCCTAAAAGGATAAATTTATACCCCTGAGTATTGGCTAGTTTCAGGGAGAAAAATTCAGTTTCAAATCCTAAAAGGATAAATTTATACCGAGCGAAAAAGGGCGTATGTTATTGCCTACACCGAGTTTCAAATCCTAAAAGGATAAATTTATACCTTTAAAGCCTTCATTTTCTTTTATGCTATCTATGTTTCAAATCCTAAAAGGATAAATTTATACCGCTTCCTTATACGCAAGTTCAAACTCAAAACTTAGTTTCAAATCCTAAAAGGATAAATTTATACCTACTCATCTCAAATGCAGTAGCACCAGTAGCAAGGTTTCAAATCCTAAAAGGATAAATTTATACTTAAAAAACAAGCTCCACAGCACTACAAAGAGAGGTTTCAAATCCTAAAAGGATAAATTTATACAAGGAGATGGAAAATGAACACGCAAACTATGCAAAGTGTTTCAAATCCTAAAAGGATAAATTTATACGCGAACAGAGCGAAGAAAGTAGTGAAAGTGCAAATAGTTTCAAATCCTAAAAGGATAAATTTATACAGCCTTGGAAAACACTACAGGCTAGACGTGACTTTCGTTTCAAATCCTAAAAGGATAAATTTATACAAATCTTCAGTCGGAAAAGCTTCTTTAAGCAACAGTTTCAAATCCTAAAAGGATAAATTTATACAGTTTGGCAATGCAGGTAGAGTTTTAGCTATCTCTGAGTTTCAAATCCTAAAAGGATAAATTTATACAATTTGATCCGTTGATTGTTGAAACTAAAATCGTAACGTTTCAAATCCTAAAAGGATAAATTTATACTTCTGCTTGAAAGTCAATTGTGGCAACATTTTGGCTGTTTCAAATCCTAAAAGGATAAATTTATACCCGACTTATAGCTATGGAATCCTTAGAAAGTCTTGGTTTCAAATCCTAAAAGGATAAATTTATACTAGAGTTTCAAGTTTAATACTACTATTTTTAATTTCGTTTCAAATCCTAAAAGGATAAATTTATAC

>NZ_CP040464|3|2|1190837-1193694|PILER-CR
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTTATGAAAATAAAATGTAAAGAAGTGTAAAGT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTGAAATTGCCCCTACTAAGAGTTGCTATAAGACTAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TACGGCGAGTTTGTAGATGGCTCGTCAAACCTACTGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATATACAAATTTACCAAACAATGAAAAACATAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGGAAACGCAATAGCAAGTAATTCACTAGCAATCAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAATGATAGAGATAATAGATGAATATAACCTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTAAATTTAATGATAAAGGAAATACCGATGAAAAAGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGAAGTTTTTAAAAATCTCAACCTAGAAGCTTTCAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTATTCTTTCAATCTCCGGCTTATTTTTTTTCATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCGTTGCCCCAAAACTAAAAGACAGTTTTTAAAAAAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATATTACCACTATTATCTACTATGTACCACATAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCAACAGTACCAAGTGATTTAGACATAGCGGTATTGAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATACTAGTCATGATAAGAACTCCGAAGAAGAGTT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTATGTCAGCAGTGCCGACGCTCTCATTGGCGCTG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTTGGCAAATAGTTAAGTAAATAAAACCAAATCAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GACAACTTGGAGCTTAGAAAACTTCATAAAAACCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATCACGCTTGGGCTAGTTATCGTAGTAGCCTCAGCTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGAGTTCATAGATATGACTTTTCGAGAGTATGATAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AATGGCAAAGGCTATCTTGGAGTTACAAAAAAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CAAGCTGGAAATTCGCCCTAATTTGTTTCTCCCTGAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATATATAGTTTGGGATAAAAAAGAAGATGGCAAACC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCGTTGGCTTTCTGTTCATCTGATAAATCGTAAGTCCG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCAATATCTTTTATCTTGATTTCAAGTGGTTTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ACTATAGTTTTGCTCTGCAACACCTTTGGATACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATTACAAAACTTACTCTAAAAGCAAAATATATGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAACCAAACCACGTTTTTAAGGCTATTTAAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGGTCAGATATCGACTTTGCAAGGAACTTGATAAATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCTGAGTATTGGCTAGTTTCAGGGAGAAAAATTCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGAGCGAAAAAGGGCGTATGTTATTGCCTACACCGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTTTAAAGCCTTCATTTTCTTTTATGCTATCTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGCTTCCTTATACGCAAGTTCAAACTCAAAACTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTACTCATCTCAAATGCAGTAGCACCAGTAGCAAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTAAAAAACAAGCTCCACAGCACTACAAAGAGAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAGGAGATGGAAAATGAACACGCAAACTATGCAAAGT
GTTTCAAATCCTAAAAGGATAAATTTATAC	GCGAACAGAGCGAAGAAAGTAGTGAAAGTGCAAATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGCCTTGGAAAACACTACAGGCTAGACGTGACTTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAATCTTCAGTCGGAAAAGCTTCTTTAAGCAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGTTTGGCAATGCAGGTAGAGTTTTAGCTATCTCTGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AATTTGATCCGTTGATTGTTGAAACTAAAATCGTAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCTGCTTGAAAGTCAATTGTGGCAACATTTTGGCT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCGACTTATAGCTATGGAATCCTTAGAAAGTCTTG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TAGAGTTTCAAGTTTAATACTACTATTTTTAATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC

>NZ_CP040464|3|3|1190837-1193694|CRISPRCasFinder
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTTATGAAAATAAAATGTAAAGAAGTGTAAAGT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTGAAATTGCCCCTACTAAGAGTTGCTATAAGACTAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TACGGCGAGTTTGTAGATGGCTCGTCAAACCTACTGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATATACAAATTTACCAAACAATGAAAAACATAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGGAAACGCAATAGCAAGTAATTCACTAGCAATCAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAATGATAGAGATAATAGATGAATATAACCTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTAAATTTAATGATAAAGGAAATACCGATGAAAAAGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGAAGTTTTTAAAAATCTCAACCTAGAAGCTTTCAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTATTCTTTCAATCTCCGGCTTATTTTTTTTCATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCGTTGCCCCAAAACTAAAAGACAGTTTTTAAAAAAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATATTACCACTATTATCTACTATGTACCACATAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCAACAGTACCAAGTGATTTAGACATAGCGGTATTGAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATACTAGTCATGATAAGAACTCCGAAGAAGAGTT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTATGTCAGCAGTGCCGACGCTCTCATTGGCGCTG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTTGGCAAATAGTTAAGTAAATAAAACCAAATCAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GACAACTTGGAGCTTAGAAAACTTCATAAAAACCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATCACGCTTGGGCTAGTTATCGTAGTAGCCTCAGCTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGAGTTCATAGATATGACTTTTCGAGAGTATGATAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AATGGCAAAGGCTATCTTGGAGTTACAAAAAAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CAAGCTGGAAATTCGCCCTAATTTGTTTCTCCCTGAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATATATAGTTTGGGATAAAAAAGAAGATGGCAAACC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCGTTGGCTTTCTGTTCATCTGATAAATCGTAAGTCCG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCAATATCTTTTATCTTGATTTCAAGTGGTTTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ACTATAGTTTTGCTCTGCAACACCTTTGGATACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATTACAAAACTTACTCTAAAAGCAAAATATATGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAACCAAACCACGTTTTTAAGGCTATTTAAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGGTCAGATATCGACTTTGCAAGGAACTTGATAAATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCTGAGTATTGGCTAGTTTCAGGGAGAAAAATTCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGAGCGAAAAAGGGCGTATGTTATTGCCTACACCGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTTTAAAGCCTTCATTTTCTTTTATGCTATCTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGCTTCCTTATACGCAAGTTCAAACTCAAAACTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTACTCATCTCAAATGCAGTAGCACCAGTAGCAAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTAAAAAACAAGCTCCACAGCACTACAAAGAGAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAGGAGATGGAAAATGAACACGCAAACTATGCAAAGT
GTTTCAAATCCTAAAAGGATAAATTTATAC	GCGAACAGAGCGAAGAAAGTAGTGAAAGTGCAAATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGCCTTGGAAAACACTACAGGCTAGACGTGACTTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAATCTTCAGTCGGAAAAGCTTCTTTAAGCAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGTTTGGCAATGCAGGTAGAGTTTTAGCTATCTCTGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AATTTGATCCGTTGATTGTTGAAACTAAAATCGTAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCTGCTTGAAAGTCAATTGTGGCAACATTTTGGCT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCGACTTATAGCTATGGAATCCTTAGAAAGTCTTG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TAGAGTTTCAAGTTTAATACTACTATTTTTAATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC

>NZ_CP040464|3|2|1190837-1193694|CRT
GTTTCAAATCCTAAAAGGATAAATTTATAC	GTTTATGAAAATAAAATGTAAAGAAGTGTAAAGT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTGAAATTGCCCCTACTAAGAGTTGCTATAAGACTAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TACGGCGAGTTTGTAGATGGCTCGTCAAACCTACTGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATATACAAATTTACCAAACAATGAAAAACATAAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGGAAACGCAATAGCAAGTAATTCACTAGCAATCAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAATGATAGAGATAATAGATGAATATAACCTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTAAATTTAATGATAAAGGAAATACCGATGAAAAAGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGAAGTTTTTAAAAATCTCAACCTAGAAGCTTTCAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTATTCTTTCAATCTCCGGCTTATTTTTTTTCATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCGTTGCCCCAAAACTAAAAGACAGTTTTTAAAAAAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATATTACCACTATTATCTACTATGTACCACATAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCAACAGTACCAAGTGATTTAGACATAGCGGTATTGAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATACTAGTCATGATAAGAACTCCGAAGAAGAGTT
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTATGTCAGCAGTGCCGACGCTCTCATTGGCGCTG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTTGGCAAATAGTTAAGTAAATAAAACCAAATCAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	GACAACTTGGAGCTTAGAAAACTTCATAAAAACCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATCACGCTTGGGCTAGTTATCGTAGTAGCCTCAGCTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGAGTTCATAGATATGACTTTTCGAGAGTATGATAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AATGGCAAAGGCTATCTTGGAGTTACAAAAAAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	CAAGCTGGAAATTCGCCCTAATTTGTTTCTCCCTGAAA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ATATATAGTTTGGGATAAAAAAGAAGATGGCAAACC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCGTTGGCTTTCTGTTCATCTGATAAATCGTAAGTCCG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TCAATATCTTTTATCTTGATTTCAAGTGGTTTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	ACTATAGTTTTGCTCTGCAACACCTTTGGATACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CATTACAAAACTTACTCTAAAAGCAAAATATATGC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAAACCAAACCACGTTTTTAAGGCTATTTAAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	TGGTCAGATATCGACTTTGCAAGGAACTTGATAAATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCCTGAGTATTGGCTAGTTTCAGGGAGAAAAATTCA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGAGCGAAAAAGGGCGTATGTTATTGCCTACACCGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTTTAAAGCCTTCATTTTCTTTTATGCTATCTAT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CGCTTCCTTATACGCAAGTTCAAACTCAAAACTTA
GTTTCAAATCCTAAAAGGATAAATTTATAC	CTACTCATCTCAAATGCAGTAGCACCAGTAGCAAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTAAAAAACAAGCTCCACAGCACTACAAAGAGAG
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAGGAGATGGAAAATGAACACGCAAACTATGCAAAGT
GTTTCAAATCCTAAAAGGATAAATTTATAC	GCGAACAGAGCGAAGAAAGTAGTGAAAGTGCAAATA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGCCTTGGAAAACACTACAGGCTAGACGTGACTTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC	AAATCTTCAGTCGGAAAAGCTTCTTTAAGCAACA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AGTTTGGCAATGCAGGTAGAGTTTTAGCTATCTCTGA
GTTTCAAATCCTAAAAGGATAAATTTATAC	AATTTGATCCGTTGATTGTTGAAACTAAAATCGTAAC
GTTTCAAATCCTAAAAGGATAAATTTATAC	TTCTGCTTGAAAGTCAATTGTGGCAACATTTTGGCT
GTTTCAAATCCTAAAAGGATAAATTTATAC	CCGACTTATAGCTATGGAATCCTTAGAAAGTCTTG
GTTTCAAATCCTAAAAGGATAAATTTATAC	TAGAGTTTCAAGTTTAATACTACTATTTTTAATTTC
GTTTCAAATCCTAAAAGGATAAATTTATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040464.1\|WP_059426718.1\|1198741_1199461_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP040464.1\|WP_059429752.1\|1187026_1188103_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
NZ_CP040464.1\|WP_059430763.1\|1189728_1190304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225759
NZ_CP040464.1\|WP_059430764.1\|1185941_1187027_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP040464.1\|WP_059430765.1\|1183846_1184641_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP040464.1\|WP_034963926.1\|1184941_1185949_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP040464.1\|WP_081047692.1\|1193966_1194329_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378226
NZ_CP040464.1\|WP_059430758.1\|1201715_1202324_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_CP040464.1\|WP_059426757.1\|1183344_1183761_-\|histidine-phosphotransferase	unknown	unknown	gnl\|CDD\|223716
NZ_CP040464.1\|WP_059426719.1\|1195377_1195782_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP040464.1\|WP_059426755.1\|1184624_1184939_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP040464.1\|WP_059426761.1\|1188144_1188840_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NZ_CP040464.1\|WP_059429716.1\|1199453_1200182_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP040464.1\|WP_059430759.1\|1200196_1200925_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP040464.1\|WP_059426715.1\|1200952_1201678_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP040464.1\|WP_059430762.1\|1194615_1194825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040464.1\|WP_059426719.1\|1190280_1190685_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP040464.1\|WP_059426752.1\|1188829_1189732_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NZ_CP040464.1\|WP_104151488.1\|1197118_1198633_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_CP040464.1\|WP_059430761.1\|1196467_1196680_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040464.1\|WP_059426718.1\|1198741_1199461_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.91328e-68
NZ_CP040464.1\|WP_059429752.1\|1187026_1188103_+\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	6.3027e-87
NZ_CP040464.1\|WP_059430763.1\|1189728_1190304_+\|hypothetical-protein	gnl\|CDD\|225759	COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only].	0.000190534
NZ_CP040464.1\|WP_059430764.1\|1185941_1187027_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.58449e-26
NZ_CP040464.1\|WP_059430765.1\|1183846_1184641_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	3.13381e-142
NZ_CP040464.1\|WP_034963926.1\|1184941_1185949_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP040464.1\|WP_081047692.1\|1193966_1194329_-\|hypothetical-protein	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	7.57842e-44
NZ_CP040464.1\|WP_059430758.1\|1201715_1202324_+\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	2.13473e-54
NZ_CP040464.1\|WP_059426757.1\|1183344_1183761_-\|histidine-phosphotransferase	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.01908e-09
NZ_CP040464.1\|WP_059426719.1\|1195377_1195782_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	7.84571e-43
NZ_CP040464.1\|WP_059426755.1\|1184624_1184939_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.44825e-14
NZ_CP040464.1\|WP_059426761.1\|1188144_1188840_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	4.90036e-100
NZ_CP040464.1\|WP_059429716.1\|1199453_1200182_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	9.45187e-145
NZ_CP040464.1\|WP_059430759.1\|1200196_1200925_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.81664e-84
NZ_CP040464.1\|WP_059426715.1\|1200952_1201678_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.04186e-73
NZ_CP040464.1\|WP_059426719.1\|1190280_1190685_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	7.84571e-43
NZ_CP040464.1\|WP_059426752.1\|1188829_1189732_+\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	1.90331e-23
NZ_CP040464.1\|WP_104151488.1\|1197118_1198633_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0

>NZ_CP040464.1|WP_059426719.1|1190280_1190685_-|rRNA-maturation-RNase-YbeY
MILCDTNYPSILDDICDELTKAEIELVFVSSDEMQEINKKERNIDKTTDVLSFPLEYVPHFPIGSIVINSDLASSKSKELGHKVEDEIALLFTHGLLHVLGFDHENDDGEMRRREIDIIEKFSLPKSLIVRSGC
>NZ_CP040464.1|WP_059430763.1|1189728_1190304_+|hypothetical-protein
MKYLFITLVAILLSGCIAKQGVQSRYYELENVAKPNFKCDRSANIDVFIDKIKMLDIYQSRNIIYKQNSQISYLKDAKFASYPNVMIYKSLIDYLQNHCKFKPVLSNKECLLNLKITILDIYVSQNEAKISAFVSVNNDKKVLVNSILSQTKSIDKFSEENAINALNLALANIQDQIYDLLTSALTTTSNN
>NZ_CP040464.1|WP_059426752.1|1188829_1189732_+|MCE-family-protein
MESKSSYFIAGAFFCIVMIFAVVFLLFMNKNGNAEEYRSYYIQTKELPNGIKKDAQVRFIGVPAGIVKDIYFSDPKTATIEIKLSIKKDLPIKKDSVAVVEIQGISGIASINISKGSPEARTFTTDEKPVIFMEQGLLAKIGDSAVNVSHRLNLTLSKFGELLSDENIKALSQTLDSINKFSSFLNSKENLENIKTILSSTNKTASALSKIKFEELANQLNAFLVDAKRQAKLLEQTQMLLAKKIESGEYDFKSIISPTLQNTNDTLSELNGLIAEIQNTLFRLEDNPYEFFFKDTGDKK
>NZ_CP040464.1|WP_059426761.1|1188144_1188840_+|ATP-binding-cassette-domain-containing-protein
MHDNVSFSIKRGEIYGFLGGSGSGKTTLLKTLIYLKEPLSGDIFMNGANLWKTNLDKRQEIRLKMGVMFQFGALFSGMSVLDNIGILLKEYSKYDKKDIDDIAKMWLLKVGLNAGAANLYPSELSGGMKKRVALARSLALSPEILFLDEPNSGLDPLSARALDRLICDLRDSLGVTVVMVTHDIDSIFSILDRFLIIYDHKIAYEGDLRGALEFKENPLRELFMMRSLDGK
>NZ_CP040464.1|WP_059429752.1|1187026_1188103_+|ABC-transporter-permease
MEDSLKFEFENGVLTLSGKFDYNLSKSDIKKLKSLKVHTLDLLNLERIDYSVAVFMTKIYDSPKLINSNDKFDKIFALVGDKKILNTKLSKPFSLNLIEDLGKSFLSIKDNFINFCIFLGEFLFGVASSIWNFKNIRFKELSNHFKDAGIKAVFIVCLTSFLIGIVLAYQGASMLERFGASIFVVDIMGIMTLREVGPLIAAIVVAGRSASSFTAQIGVMKITEEIDAMKTMGFEPFKFIVLPRVMALIIAMPLVVFLANSISIAGQMIVCNFYLDLSFNDYLERFKSSIELRHFWVGILKAPFFGAVIGLIGCMRGFEVSGSTDSVGELTTKSVVNAIFWIIAIDAIFSIIYTELEI
>NZ_CP040464.1|WP_059430764.1|1185941_1187027_+|AI-2E-family-transporter
MSNNSLKPVKDDKVQKTNQIFFALFAVFVLGWMIFLFKSYLLTISIGILLAVATANIQNFFLRATKGKRLISTIFTTIFFAAIFIIPFIYAVVAIFQQGTSVDIEYLNSIVTYVKNYDFTLPSKVQFLEPKFKELLLGIDFNSLVTNAFNYIKGSLEKSASFFTDMGLIVLFFFLSHLYGSELASYIKSVTPMAPSELEFIFLEVTNTMSVVFYTTIANAILQGFLFSLIVLFYGQNGLLFGVLFGFASLIPIVGGALVYVPFSIYELSIGDTFGAISIFLYSVIVISTLADNFIKPLIIKFINQKLVKTKAKMNELLLFFAMIAGLSSFGFWGVILGPAIVTLTTATLRLYVLLKERGIM
>NZ_CP040464.1|WP_034963926.1|1184941_1185949_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MDRIVEIEKVSFESEYEVNLRPASFDDYIGQEKIKSNLKVFIAAAKKRSECLDHALFYGPPGLGKTTIAHIIASEMNTNIKITAAPMIEKSGDLAAILTNLEAGDVLFIDEIHRLSSAIEEVLYSAMEDFRLDIIIGSGPAAQTIKIDIPKFTLIGATTRAGMISAPLRDRFGMQFRLQFYTPEELALIVSKASNKLGKNCQKEASLEIAKRSRGTPRIALRLLKRIRDFAEINDENNITKDRAKEALDSLGVNDLGFDEMDLKYLDILLDAKDRPLGLSTIAAALSEDEGTIEDVIEPYLLANGYIQRTAKGRTLSYKSFDTLGIKPSKGLFDE
>NZ_CP040464.1|WP_059426755.1|1184624_1184939_+|rhodanese-like-domain-containing-protein
MNIPNNHIVDIRRPSEWMEFGVLEGSKLITFENLNGKINPMFLPLIEQNFKKDDEIVLMCHTALRSKAAMKFLQEKGYSNVKDIKGGAYYFEKMGAKFMPYSGE
>NZ_CP040464.1|WP_059430765.1|1183846_1184641_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKKITISDLFAMKNKQKIVMITAYDALFAKLFDDYADMILVGDSLNMSFNGKNETIGLSVKEMIYHAKAVRTGSKRAFLVVDVPFGAIYSKKVALKNCIEIYKKTGCDAVKIEGGSEIKGIVKALSQNGVGVMGHIGLKPQLSRKEGGFKVAGRDEETAKKILDDALELELAGAGLLLLEGIPSELGKKITNSVKIPTIGIGAGSDTDGQVLVWSDAFGFFEEFKPKFVKRFLDGANLIRNAIQDYADEVRTKKFPSSEHEYTK
>NZ_CP040464.1|WP_059426757.1|1183344_1183761_-|histidine-phosphotransferase
MGILKQLETDYDLDIVEDFLTHFDFMSSSLDPLIINLSRKEVCSGNLDEIFRIFHNIKSAAGFLKLEPLIKLATLCENILDEAKNQKDENSEASDEFIDWLLLVADQVETYRADIENDELYFHILNPKIINMPKRFFS
>NZ_CP040464.1|WP_081047692.1|1193966_1194329_-|hypothetical-protein
MLYPPFLLPKKSWGIMMSGLENHFGTDASIDDDTNKNILNFLVANSAQTRGDKTAFNILKYAKNDQNIAITQNEYWIKKHRKIDEKVFLRKDVKSKANCVACHKEIENGIIGLIDYEKIK
>NZ_CP040464.1|WP_059430762.1|1194615_1194825_-|hypothetical-protein
MTNVGFENKLNELNLSKKEFVELVSMPYQTLMNWKQKDETPYWVEPFLCYYEKGKTLDELLALIDKFKK
>NZ_CP040464.1|WP_059426719.1|1195377_1195782_+|rRNA-maturation-RNase-YbeY
MILCDTNYPSILDDICDELTKAEIELVFVSSDEMQEINKKERNIDKTTDVLSFPLEYVPHFPIGSIVINSDLASSKSKELGHKVEDEIALLFTHGLLHVLGFDHENDDGEMRRREIDIIEKFSLPKSLIVRSGC
>NZ_CP040464.1|WP_059430761.1|1196467_1196680_-|hypothetical-protein
MDKLETLKRIFNLLNQIFKSTNLITHNLIVDINFKYTFKQSKEMNFSTLKEYNCRYKTKTALKLSLYILL
>NZ_CP040464.1|WP_104151488.1|1197118_1198633_-|sodium/proline-symporter-PutP
MSFSVYIAITLYFGILLIIGRISYNKRSSLNEYLLDNRSLGPVMTALSAGASDMSGWMLLGLPGALYLSGIANMWIAIGLSIGAWANYKYLAKRIRIYTEVASDSITIPDFLENRFKDRTKVLRIISGVFILIFFTLYVSSGIIAGGKTFESFFGLNFSLGAIFTLFIVVFYTFFGGFKAVCLTDAFQGTLMFLVLVLIPVVAFLNLNTPSDSSFFTELSKYSQMAGKDHLNLFAGQTFLGILGLLAWGLGYFGQPHIIVRFMAIRNSKELDKARFIGISWMVLGLIGAMASGLIGFVYFNQIGMPLKDPETVFLKLGEVLFHPFIVGVIISAVLAAIMSTISSQLLVSASSITRDFIFAFYKKEVSQTTQVLVGRFAVVIVAITATFIAFNSTDTVLGVVGNAWAGFGASFGPVLLFSLYSRHMSALSALCGMVVGGVTVLLWIVFGLSDVVYELLPGFVFACTAIAIVNKYNDMIKKMSREPNLSVIGEEFDKMKQRSENKL
>NZ_CP040464.1|WP_059426718.1|1198741_1199461_+|amino-acid-ABC-transporter-permease
MTNLLNEKTFKFIFSIAIIIIGIYYTYPVSITDAQKGAYVDSYFTTLGLTFGGIFIGIVLGFILAFLKFLNIKILSFIIDEYIDIVRGTPVLLQLMIFAFVILATLSDNFYAAVIALGLNSSAYVAEIVRSGINSVDKGQMEAARAMGLSYSVSMRQIIFPQAVKNILPALANEFISLFKETSVVGLIGIFDLTMQSKSLQATLFSPEPILFAGVIYYANVKLFSLLAKLLENRLNKND
>NZ_CP040464.1|WP_059429716.1|1199453_1200182_+|amino-acid-ABC-transporter-ATP-binding-protein
MIKIENLVKNYGNLKVLNSISTEIKKGEVVAIIGPSGGGKSTFLRCINRLEEPTSGHIFISGVDILDPKININKIRQKVSMVFQHFNLFANKTVMQNLTLAPLQTGLCDLKTANDRANELLKKVGLSDKANAYPHKLSGGQKQRIAIARSLAMEPDIILFDEPTSALDPEMIGEVLSIMKEVAKDGLTMLVVTHEMGFAKNVANRIFFMDKGIIAVDDTPKNVFENCTHPRLNEFLNKILNH
>NZ_CP040464.1|WP_059430759.1|1200196_1200925_+|basic-amino-acid-ABC-transporter-substrate-binding-protein
MKSFFKFIVAACVAAGFSHAADVLRVGTNAAYPPFEFIDEQNKIAGFDMDLIDALSKKVRFEYKIVNMSFDGLIPALKAGKIDAVAAAMSATPDRIKAVSFTKPYYTTENLFIKQAKNGDLTSKQNLEGKKIAVQLGTVQEIAARSIKGVKVMANEDIFAAIMALKNGKVDAVLVDSSIGYGYLNKNKDLAEFLKEPDGSEGFSIAFDKNKHTDLIAKINQAVEELKNDGTYDKLLEKYNLK
>NZ_CP040464.1|WP_059426715.1|1200952_1201678_+|transporter-substrate-binding-domain-containing-protein
MNRVFKFIFALLLMLNLANAKTLIFGSDAEYPPFGYMDEHNKIAGFDIDLVDAISKKAGFEYKFIKVGFDALIPALKAGKIDAIAASMSATTERRKSVDFSNAYFYTKNLYLKMASDKEITSKDDLKTKRIGAMLGTVQESVAHEIKGAKVIATEGIAGSIMNLKAGKVDVVIVDSSVGYGYLKKNTDIVKWLEENDGSDGFAMAFDKDKHSEFLAKFNKALEDIKNDGTYEKLLEKYDLK
>NZ_CP040464.1|WP_059430758.1|1201715_1202324_+|thiamine-phosphate-synthase
MCQLYVLTDKEFTPQNSISGQILELLNSGIKFIQYRNKIQDHDIRLLRSIAGLCDDFNAKFIINDDPFLAKACGAHGVHIGKDDEDIKKAKELLGKNSIIGVSCYNDINLALKAQRDGASYVAFGAMYTSKTKPNAPLCDHDTIKKAKENLSIPICVIGGINALNLKEVSTLMPDLIAIVSAAYSPKSISENITNLNNIIRN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040464_3	3.42\|1193564\|35\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1193564-1193598	35	NZ_CP040464.1	289545-289579	0	1.0

1. spacer 3.42|1193564|35|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to position: 289545-289579, mismatch: 0, identity: 1.0

ccgacttatagctatggaatccttagaaagtcttg	CRISPR spacer
ccgacttatagctatggaatccttagaaagtcttg	Protospacer
***********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040464_2	2.14\|1172431\|38\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1172431-1172468	38	NZ_CP008809	Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence	14664-14701	0	1.0
NZ_CP040464_2	2.14\|1172431\|38\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1172431-1172468	38	NZ_CP018792	Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence	2856-2893	0	1.0
NZ_CP040464_2	2.14\|1172431\|38\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1172431-1172468	38	NZ_CP018794	Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence	2861-2898	0	1.0
NZ_CP040464_3	3.4\|1191065\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1191065-1191100	36	NZ_CP043436	Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence	19971-20006	0	1.0
NZ_CP040464_3	3.4\|1191065\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1191065-1191100	36	NZ_CP008812	Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence	614-649	0	1.0
NZ_CP040464_3	3.4\|1191065\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1191065-1191100	36	NZ_CP018792	Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence	8002-8037	0	1.0
NZ_CP040464_3	3.4\|1191065\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1191065-1191100	36	NZ_CP018794	Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence	7992-8027	0	1.0
NZ_CP040464_3	3.37\|1193234\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1193234-1193269	36	NZ_CP008809	Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence	19378-19413	0	1.0
NZ_CP040464_3	3.34\|1193037\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1193037-1193070	34	NZ_CP007001	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP2, complete sequence	18777-18810	2	0.941
NZ_CP040464_3	3.34\|1193037\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1193037-1193070	34	NZ_CP008811	Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-1, complete sequence	15425-15458	2	0.941
NZ_CP040464_2	2.7\|1171971\|39\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1171971-1172009	39	NZ_CP008809	Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence	19375-19413	3	0.923
NZ_CP040464_2	2.23\|1173018\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1173018-1173053	36	NC_021623	Borrelia hermsii strain HS1 plasmid lp174, complete sequence	42106-42141	8	0.778
NZ_CP040464_2	2.23\|1173018\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1173018-1173053	36	NZ_CP014350	Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence	46686-46721	8	0.778
NZ_CP040464_3	3.24\|1192385\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192385-1192418	34	NZ_CP033221	Parasedimentitalea marina strain W43 plasmid pW43B, complete sequence	159449-159482	8	0.765
NZ_CP040464_3	3.31\|1192843\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192843-1192876	34	HQ633071	Synechococcus phage S-SKS1 genomic sequence	139052-139085	8	0.765
NZ_CP040464_3	3.35\|1193101\|37\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1193101-1193137	37	JF412296	EBPR podovirus 3, partial sequence	266-302	8	0.784
NZ_CP040464_2	2.12\|1172302\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1172302-1172335	34	NZ_CP042047	Staphylococcus aureus strain B2-7A plasmid pSALNBL75, complete sequence	40182-40215	9	0.735
NZ_CP040464_2	2.24\|1173084\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1173084-1173119	36	MT774393	CrAssphage cr127_1, complete genome	9168-9203	9	0.75
NZ_CP040464_3	3.19\|1192055\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192055-1192088	34	LR595867	Escherichia virus Mu_3F6 genome assembly, chromosome: 1	4880-4913	9	0.735
NZ_CP040464_3	3.21\|1192187\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192187-1192222	36	NZ_KR230047	Staphylococcus epidermidis strain SP1 plasmid pSP01, complete sequence	52885-52920	9	0.75
NZ_CP040464_3	3.23\|1192321\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192321-1192354	34	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	65769-65802	9	0.735
NZ_CP040464_3	3.26\|1192514\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192514-1192547	34	NZ_CP042047	Staphylococcus aureus strain B2-7A plasmid pSALNBL75, complete sequence	40182-40215	9	0.735
NZ_CP040464_3	3.31\|1192843\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192843-1192876	34	MK250029	Prevotella phage Lak-C1, complete genome	302780-302813	9	0.735
NZ_CP040464_3	3.31\|1192843\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192843-1192876	34	MK250016	Prevotella phage Lak-A1, complete genome	336754-336787	9	0.735
NZ_CP040464_3	3.31\|1192843\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192843-1192876	34	MK250019	Prevotella phage Lak-A2, complete genome	257430-257463	9	0.735
NZ_CP040464_3	3.43\|1193629\|36\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1193629-1193664	36	MT774393	CrAssphage cr127_1, complete genome	9168-9203	9	0.75
NZ_CP040464_2	2.2\|1171648\|35\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1171648-1171682	35	MN694094	Marine virus AFVG_250M290, complete genome	54825-54859	10	0.714
NZ_CP040464_3	3.1\|1190867\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1190867-1190900	34	NC_013164	Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence	110382-110415	10	0.706
NZ_CP040464_3	3.23\|1192321\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192321-1192354	34	MN856100	Bacteriophage sp. isolate 2, complete genome	40202-40235	10	0.706
NZ_CP040464_3	3.31\|1192843\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1192843-1192876	34	NZ_CP009356	Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence	195352-195385	10	0.706
NZ_CP040464_3	3.39\|1193364\|37\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1193364-1193400	37	NZ_CP018188	Streptococcus salivarius strain ICDC2 plasmid, complete sequence	36108-36144	11	0.703
NZ_CP040464_2	2.21\|1172890\|34\|NZ_CP040464\|PILER-CR,CRISPRCasFinder,CRT	1172890-1172923	34	NZ_AP017565	Pseudanabaena sp. ABRG5-3 plasmid ABRG53e, complete sequence	80936-80969	12	0.647

1. spacer 2.14|1172431|38|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008809 (Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence) position: , mismatch: 0, identity: 1.0

cataatcacaaaaattcgtagagaatttggcgatgaaa	CRISPR spacer
cataatcacaaaaattcgtagagaatttggcgatgaaa	Protospacer
**************************************

2. spacer 2.14|1172431|38|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018792 (Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence) position: , mismatch: 0, identity: 1.0

cataatcacaaaaattcgtagagaatttggcgatgaaa	CRISPR spacer
cataatcacaaaaattcgtagagaatttggcgatgaaa	Protospacer
**************************************

3. spacer 2.14|1172431|38|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018794 (Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence) position: , mismatch: 0, identity: 1.0

cataatcacaaaaattcgtagagaatttggcgatgaaa	CRISPR spacer
cataatcacaaaaattcgtagagaatttggcgatgaaa	Protospacer
**************************************

4. spacer 3.4|1191065|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043436 (Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence) position: , mismatch: 0, identity: 1.0

catatacaaatttaccaaacaatgaaaaacataaaa	CRISPR spacer
catatacaaatttaccaaacaatgaaaaacataaaa	Protospacer
************************************

5. spacer 3.4|1191065|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008812 (Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence) position: , mismatch: 0, identity: 1.0

catatacaaatttaccaaacaatgaaaaacataaaa	CRISPR spacer
catatacaaatttaccaaacaatgaaaaacataaaa	Protospacer
************************************

6. spacer 3.4|1191065|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018792 (Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence) position: , mismatch: 0, identity: 1.0

catatacaaatttaccaaacaatgaaaaacataaaa	CRISPR spacer
catatacaaatttaccaaacaatgaaaaacataaaa	Protospacer
************************************

7. spacer 3.4|1191065|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018794 (Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence) position: , mismatch: 0, identity: 1.0

catatacaaatttaccaaacaatgaaaaacataaaa	CRISPR spacer
catatacaaatttaccaaacaatgaaaaacataaaa	Protospacer
************************************

8. spacer 3.37|1193234|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008809 (Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence) position: , mismatch: 0, identity: 1.0

agccttggaaaacactacaggctagacgtgactttc	CRISPR spacer
agccttggaaaacactacaggctagacgtgactttc	Protospacer
************************************

9. spacer 3.34|1193037|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007001 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP2, complete sequence) position: , mismatch: 2, identity: 0.941

ttaaaaaacaagctccacagcactacaaagagag	CRISPR spacer
ttaaaaaacaagccccacagcattacaaagagag	Protospacer
*************.********.***********

10. spacer 3.34|1193037|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008811 (Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-1, complete sequence) position: , mismatch: 2, identity: 0.941

ttaaaaaacaagctccacagcactacaaagagag	CRISPR spacer
ttaaaaaacaaccgccacagcactacaaagagag	Protospacer
*********** * ********************

11. spacer 2.7|1171971|39|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008809 (Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence) position: , mismatch: 3, identity: 0.923

aaaagccttggaaaacactacaggctcgacgtgattttt	CRISPR spacer
aaaagccttggaaaacactacaggctagacgtgactttc	Protospacer
************************** *******.***.

12. spacer 2.23|1173018|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NC_021623 (Borrelia hermsii strain HS1 plasmid lp174, complete sequence) position: , mismatch: 8, identity: 0.778

tctcattatctttttcaagattattaatt----gtattat	CRISPR spacer
tatctttatcttttttaagattattaatctaaggta----	Protospacer
* ** **********.************.    ***

13. spacer 2.23|1173018|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014350 (Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.778

tctcattatctttttcaagattattaatt----gtattat	CRISPR spacer
tatctttatcttttttaagattattaatctaaggta----	Protospacer
* ** **********.************.    ***

14. spacer 3.24|1192385|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033221 (Parasedimentitalea marina strain W43 plasmid pW43B, complete sequence) position: , mismatch: 8, identity: 0.765

actatagttttgctctgcaacacctttg-gataca	CRISPR spacer
gcaatagtgttgccctgcaacacctttatgacgc-	Protospacer
.* ***** ****.*************. **..*

15. spacer 3.31|1192843|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 8, identity: 0.765

ctttaaagccttcattttcttttatgctatctat	CRISPR spacer
ctttaaagtcttcattttcttctactaaatcttg	Protospacer
********.************.**.   ****

16. spacer 3.35|1193101|37|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to JF412296 (EBPR podovirus 3, partial sequence) position: , mismatch: 8, identity: 0.784

aaggagatggaaaatgaacacgcaaa-ctatgcaaagt	CRISPR spacer
gaggagatgaaaaatgagcacgcaaacctacttacag-	Protospacer
.********.*******.******** ***. .* **

17. spacer 2.12|1172302|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042047 (Staphylococcus aureus strain B2-7A plasmid pSALNBL75, complete sequence) position: , mismatch: 9, identity: 0.735

aaaaccaaaccacgtttttaaggctatttaaaca	CRISPR spacer
ttacgaaaaccacgtttttaaggcaattaaagaa	Protospacer
  *   ****************** *** **. *

18. spacer 2.24|1173084|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 9, identity: 0.75

---tagagtttcaagtttaatactactatttttaatttc	CRISPR spacer
actcgga---taaagtttaatattactatttttaacttt	Protospacer
   ..**   * **********.************.**.

19. spacer 3.19|1192055|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to LR595867 (Escherichia virus Mu_3F6 genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.735

aatggcaaaggctatcttggag-ttacaaaaaaac	CRISPR spacer
aatggcaaaggttatctttgagtttacatggctg-	Protospacer
***********.****** *** ***** ..  .

20. spacer 3.21|1192187|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KR230047 (Staphylococcus epidermidis strain SP1 plasmid pSP01, complete sequence) position: , mismatch: 9, identity: 0.75

atatatagtttgggataaaaaagaagatggcaaacc	CRISPR spacer
tgacacaatttgggatatacaagaagatggcaaaat	Protospacer
  *.*.*.********* * ************** .

21. spacer 3.23|1192321|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 9, identity: 0.735

tcaatatcttttatcttgatttcaagtggtttta	CRISPR spacer
tataccatttttatcttgatttaaagtgattttc	Protospacer
*  *.  .************** *****.****

22. spacer 3.26|1192514|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042047 (Staphylococcus aureus strain B2-7A plasmid pSALNBL75, complete sequence) position: , mismatch: 9, identity: 0.735

aaaaccaaaccacgtttttaaggctatttaaaca	CRISPR spacer
ttacgaaaaccacgtttttaaggcaattaaagaa	Protospacer
  *   ****************** *** **. *

23. spacer 3.31|1192843|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.735

ctttaaagccttcattttcttttatgctatctat	CRISPR spacer
aattaaatcattcattttcttttatgtttattaa	Protospacer
  ***** * ****************.*  .**

24. spacer 3.31|1192843|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.735

ctttaaagccttcattttcttttatgctatctat	CRISPR spacer
aattaaatcattcattttcttttatgtttattaa	Protospacer
  ***** * ****************.*  .**

25. spacer 3.31|1192843|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.735

ctttaaagccttcattttcttttatgctatctat	CRISPR spacer
aattaaatcattcattttcttttatgtttattaa	Protospacer
  ***** * ****************.*  .**

26. spacer 3.43|1193629|36|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 9, identity: 0.75

---tagagtttcaagtttaatactactatttttaatttc	CRISPR spacer
actcgga---taaagtttaatattactatttttaacttt	Protospacer
   ..**   * **********.************.**.

27. spacer 2.2|1171648|35|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to MN694094 (Marine virus AFVG_250M290, complete genome) position: , mismatch: 10, identity: 0.714

gtttatgatctctatcgtatcgttctcatcacgga	CRISPR spacer
atttattctctctatcgtatcgttcttctttagct	Protospacer
.*****  ******************. *.  *

28. spacer 3.1|1190867|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NC_013164 (Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence) position: , mismatch: 10, identity: 0.706

gtttatgaaaataaaatgtaaagaagtgtaaagt	CRISPR spacer
tagtaagaaaataaaatgtaaaggagtttgtaaa	Protospacer
   ** *****************.*** *. *.

29. spacer 3.23|1192321|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to MN856100 (Bacteriophage sp. isolate 2, complete genome) position: , mismatch: 10, identity: 0.706

tcaatatcttttatcttgatttcaagtggtttta-------	CRISPR spacer
ccaatatcttttatcttgtattcaa-------tacctaaat	Protospacer
.*****************  *****       **

30. spacer 3.31|1192843|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009356 (Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence) position: , mismatch: 10, identity: 0.706

ctttaaagccttcattttcttttatgctatctat	CRISPR spacer
gtgtgctaatttcattttcttttaaggtatctat	Protospacer
 * *.  . .************** * *******

31. spacer 3.39|1193364|37|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018188 (Streptococcus salivarius strain ICDC2 plasmid, complete sequence) position: , mismatch: 11, identity: 0.703

--agtttggcaatgcaggtagagttttagctatctctga	CRISPR spacer
gaaactca--tattcaggtagagttttagctaactctat	Protospacer
  *..*..   ** ****************** ****.

32. spacer 2.21|1172890|34|NZ_CP040464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017565 (Pseudanabaena sp. ABRG5-3 plasmid ABRG53e, complete sequence) position: , mismatch: 12, identity: 0.647

ttgattataaacttagttgcaattagttcttatt	CRISPR spacer
aaatgctcaaatttaattgcaattagttcttaag	Protospacer
  .  . .***.***.****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

222902 : 260267

Campylobacter_phage(33.33%)

plate,head,tRNA,capsid,tail,terminase,integrase,transposase

attL 215044:215061|attR 264628:264645

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
215044:215061	attL	NA	NA	NA	NA
WP_138297586.1\|222902_223820_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_034962537.1\|223816_224821_-	hypothetical protein	NA	NA	NA	NA
WP_034962538.1\|224817_225186_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_034962539.1\|225195_225645_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_059430459.1\|225644_226526_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_059430460.1\|226753_227350_+	redoxin domain-containing protein	NA	NA	NA	NA
WP_104151411.1\|227468_227825_+	hypothetical protein	NA	NA	NA	NA
WP_059430462.1\|228096_228738_-	helix-turn-helix domain-containing protein	A0A0M3LPF9	Mannheimia_phage	2.6e-12	31.3
WP_059430464.1\|229336_229558_+	hypothetical protein	NA	NA	NA	NA
WP_138297587.1\|229557_231606_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_104151409.1\|231641_232580_+	AAA family ATPase	F6MII7	Haemophilus_phage	1.6e-26	31.9
WP_104151408.1\|232625_232919_+	hypothetical protein	NA	NA	NA	NA
WP_104151407.1\|232982_233324_+	hypothetical protein	NA	NA	NA	NA
WP_104151406.1\|233444_233933_+	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	1.7e-11	28.0
WP_104151405.1\|234308_234941_+	hypothetical protein	NA	NA	NA	NA
WP_104151404.1\|234937_235939_+	AAA family ATPase	NA	NA	NA	NA
WP_104151403.1\|235940_236378_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_104151402.1\|236367_236646_+	hypothetical protein	NA	NA	NA	NA
WP_104151401.1\|236660_236864_+	hypothetical protein	NA	NA	NA	NA
WP_104151400.1\|236961_237441_-	phage virion morphogenesis protein	A7YGE7	Campylobacter_phage	2.0e-20	37.3
WP_104151399.1\|237569_238817_-\|head	phage head morphogenesis protein	C9DGN7	Escherichia_phage	5.7e-35	40.8
WP_138297588.1\|238806_240162_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	1.3e-16	25.8
WP_138297589.1\|240158_241802_-\|terminase	phage terminase large subunit	Q6TM76	Pseudomonas_phage	1.5e-96	41.8
WP_104151395.1\|241810_242296_-	DUF1804 family protein	NA	NA	NA	NA
WP_104151394.1\|242288_242690_-	DUF1320 family protein	NA	NA	NA	NA
WP_104151393.1\|242805_243780_-\|capsid	major capsid protein E	NA	NA	NA	NA
WP_104151392.1\|243789_244116_-	hypothetical protein	NA	NA	NA	NA
WP_104151391.1\|244126_244918_-	hypothetical protein	H7BWC3	unidentified_phage	1.6e-22	32.2
WP_138297590.1\|244918_245362_-	hypothetical protein	NA	NA	NA	NA
WP_104151389.1\|245533_245971_+	glycoside hydrolase family protein	A0A2H4YFB5	Aeromonas_phage	1.9e-14	35.3
WP_059430490.1\|245963_246302_+	hypothetical protein	NA	NA	NA	NA
WP_059430491.1\|246298_246538_+	hypothetical protein	NA	NA	NA	NA
WP_059430492.1\|246527_246926_+	hypothetical protein	NA	NA	NA	NA
WP_104151388.1\|246906_247530_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.5e-12	34.8
WP_059430494.1\|247531_247819_+\|plate	baseplate assembly protein	Q75QM0	Wolbachia_phage	9.3e-10	50.0
WP_104151387.1\|247811_248897_+\|plate	baseplate assembly protein	A0A088FQL4	Escherichia_phage	3.2e-26	28.7
WP_059430496.1\|248893_249508_+\|tail	phage tail protein I	A7YGG0	Campylobacter_phage	2.0e-17	45.9
WP_104151386.1\|249504_250383_+	hypothetical protein	A7YGK4	Campylobacter_phage	1.1e-32	40.1
WP_138297591.1\|250379_250811_+	hypothetical protein	NA	NA	NA	NA
WP_138297592.1\|250892_251297_+	hypothetical protein	NA	NA	NA	NA
WP_059430500.1\|251309_251897_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_059430501.1\|251887_252217_+	DUF1353 domain-containing protein	X2KQ25	Campylobacter_phage	4.2e-30	56.1
WP_059430502.1\|252260_253424_+\|tail	phage tail protein	A7YGH4	Campylobacter_phage	3.7e-89	48.6
WP_059430503.1\|253434_253950_+\|tail	phage tail protein	A7YGZ4	Campylobacter_phage	3.7e-33	44.0
WP_059430504.1\|253968_254217_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_138297593.1\|254338_254692_-	hypothetical protein	NA	NA	NA	NA
WP_059430506.1\|254736_256947_+\|tail	phage tail tape measure protein	A7YG87	Campylobacter_phage	1.5e-62	36.8
WP_059430507.1\|256957_257332_+\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	3.9e-08	31.1
WP_104151383.1\|257324_257519_+\|tail	phage tail protein	NA	NA	NA	NA
WP_104151382.1\|257512_258484_+\|tail	phage tail protein	A0A088FRU7	Escherichia_phage	4.4e-19	28.1
WP_104151381.1\|258492_258699_-	hypothetical protein	NA	NA	NA	NA
WP_138297594.1\|259075_259417_-	HNH endonuclease	NA	NA	NA	NA
WP_059430512.1\|259463_260267_-	hypothetical protein	F5A3D6	Riemerella_phage	2.4e-42	40.4
264628:264645	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040464

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection