CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040532	Burkholderia pseudomallei strain VB3253 chromosome 2, complete sequence	4 crisprs	cas3,csa3	11	1	3	0
NZ_CP040531	Burkholderia pseudomallei strain VB3253 chromosome 1, complete sequence	0 crisprs	DEDDh,csa3,DinG,WYL	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040532_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040532_1

99640-101090

Orphan

Consensus_repeat	Method
AGCACGGCNACGGGNCANGNTNC	CRT

34 spacers

The CRISPR arrays of NZ_CP040532_1

>merge|NZ_CP040532|1|99640-101090|CRT
AGCACGGCAACGGGCCAAGGCTCGCATGCGACGGGTAGTAACAGCACGGCAACGGGTCAGGATGCCACCGCGTCGGGCACATCGAGCACGGCGACGGGCCAAGGTTCGCAAGCGACGGGTAGCAACAGCACGGCAACGGGGCAGGATGCCACTGCGTCGGGTGAATCGAGCACGGCGACAGGCCAAGGCTCGCAAGCGACGGGCAGCAACAGCACGGCAACGGGGCAGGATGCTAACGCGTCGGGTGAATCGAGCACGGCAACGGGCCAAGGTTCGCAAGCGACGGGGAACAACAGCACGGCAACGGGGCAGGATGCCACCGCGTCGGGCACATCAAGCACGGCAACGGGGCAGGATGCCACCGCGTCGGGTGAATCGAGCACGGCGATGGGCCAAGGCTCGCAAGCGACGGGGAACAACAGCACGGCAACGGGGCAGGATGCCACCGCGTCGGGTGAATCGAGCACGGCGGCGGGCCAAGGCTCGCAAGCGACGGGCAGCAACAGCACGGCAACGGGTCAGGATGCCACCGCGTCGGGCACATCGAGCACGGCGACGGGCCAAGGTTCGCAAGCGACGGGCAGCAACAGCACGGCAACGGGTCAGGATGCCACCGCGTCGGGCACATCGAGCACGGCGACGGGCCAAGGTTCGCAAGCGATGGGCAGCAACAGCACGGCAACGGGTCAAGATGCTATCGCGTCGGGTGAATCGAGCACGGCAACGGGCCAAGGCTCGCAAGCGACGGGCAGCAACAGCACGGCAACGGGGCAGGATGCCACCGCGTCGGGTGAATCGAGCACGGCGGCGGGCCAAGGTTCGCAAGCGACGGGGAACAACAGCACGGCAACGGGGCAGGATGCTATCGCGTCGGGTGAATCGAGCACGGCGACAGGCCAAGGCTCGCAAGCGACGGGTAGCAACAGCACGGCAACGGGGCAGGATGCTACCGCGTCGGGTGAATCGAGCACGGCGACAGGCCAAGGCTCGCAAGCGACCGGGGATAACAGCACGGCAACGGGTCAAGATGCTATCGCGTCGGGCACATCGAGCACGGCGACGGGCCAAGGTTCGCAAGCGACGGGCAGCAACAGCATGGCAACGGGTCAAGATGCTATCGCGTCGGGTGAATCGAGCACGGCGATGGGCCAAGGTTCGCAAGCGACGGGCAGCAACAGCACGGCAACGGGGCAGGATGCTATTGCGTCGGGTGAATCGAGCACGGCGGCGGGCCAAGGTTCGCAAGCGACGGGCAGCAACAGCACGGCAACGGGCCAGGATGCCACCGCGTCGGGCACGTCGAGCACGGCAACGGGCCAAGGTGCGCAAGCGACGGGGGACAACAGCACGGCAGCGGGCCAGAATGCCGCCGCGTCGGGTGAATCGAGCACGGCGACGGGCCAAGGCTCGCAAGCGGCGGGCAGCAACAGCACGGCGAACGGCGCCGGTGC

>NZ_CP040532|1|1|99640-101090|CRT
AGCACGGCAACGGGCCAAGGCTC	GCATGCGACGGGTAGTAAC
AGCACGGCAACGGGTCAGGATGC	CACCGCGTCGGGCACATCG
AGCACGGCGACGGGCCAAGGTTC	GCAAGCGACGGGTAGCAAC
AGCACGGCAACGGGGCAGGATGC	CACTGCGTCGGGTGAATCG
AGCACGGCGACAGGCCAAGGCTC	GCAAGCGACGGGCAGCAAC
AGCACGGCAACGGGGCAGGATGC	TAACGCGTCGGGTGAATCG
AGCACGGCAACGGGCCAAGGTTC	GCAAGCGACGGGGAACAAC
AGCACGGCAACGGGGCAGGATGC	CACCGCGTCGGGCACATCA
AGCACGGCAACGGGGCAGGATGC	CACCGCGTCGGGTGAATCG
AGCACGGCGATGGGCCAAGGCTC	GCAAGCGACGGGGAACAAC
AGCACGGCAACGGGGCAGGATGC	CACCGCGTCGGGTGAATCG
AGCACGGCGGCGGGCCAAGGCTC	GCAAGCGACGGGCAGCAAC
AGCACGGCAACGGGTCAGGATGC	CACCGCGTCGGGCACATCG
AGCACGGCGACGGGCCAAGGTTC	GCAAGCGACGGGCAGCAAC
AGCACGGCAACGGGTCAGGATGC	CACCGCGTCGGGCACATCG
AGCACGGCGACGGGCCAAGGTTC	GCAAGCGATGGGCAGCAAC
AGCACGGCAACGGGTCAAGATGC	TATCGCGTCGGGTGAATCG
AGCACGGCAACGGGCCAAGGCTC	GCAAGCGACGGGCAGCAAC
AGCACGGCAACGGGGCAGGATGC	CACCGCGTCGGGTGAATCG
AGCACGGCGGCGGGCCAAGGTTC	GCAAGCGACGGGGAACAAC
AGCACGGCAACGGGGCAGGATGC	TATCGCGTCGGGTGAATCG
AGCACGGCGACAGGCCAAGGCTC	GCAAGCGACGGGTAGCAAC
AGCACGGCAACGGGGCAGGATGC	TACCGCGTCGGGTGAATCG
AGCACGGCGACAGGCCAAGGCTC	GCAAGCGACCGGGGATAAC
AGCACGGCAACGGGTCAAGATGC	TATCGCGTCGGGCACATCG
AGCACGGCGACGGGCCAAGGTTC	GCAAGCGACGGGCAGCAAC
AGCATGGCAACGGGTCAAGATGC	TATCGCGTCGGGTGAATCG
AGCACGGCGATGGGCCAAGGTTC	GCAAGCGACGGGCAGCAAC
AGCACGGCAACGGGGCAGGATGC	TATTGCGTCGGGTGAATCG
AGCACGGCGGCGGGCCAAGGTTC	GCAAGCGACGGGCAGCAAC
AGCACGGCAACGGGCCAGGATGC	CACCGCGTCGGGCACGTCG
AGCACGGCAACGGGCCAAGGTGC	GCAAGCGACGGGGGACAAC
AGCACGGCAGCGGGCCAGAATGC	CGCCGCGTCGGGTGAATCG
AGCACGGCGACGGGCCAAGGCTC	GCAAGCGGCGGGCAGCAAC
AGCACGGCGAACGGCGCCGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040532.1\|WP_004547793.1\|92806_92995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238208
NZ_CP040532.1\|WP_038775249.1\|103283_103499_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004523716.1\|93703_95299_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NZ_CP040532.1\|WP_076836123.1\|92999_93623_-\|DUF2244-domain-containing-protein	unknown	unknown	gnl\|CDD\|378350
NZ_CP040532.1\|WP_143283097.1\|95585_95819_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_041189449.1\|110143_111820_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP040532.1\|WP_004551161.1\|101760_103248_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226737
NZ_CP040532.1\|WP_004529637.1\|108847_109420_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP040532.1\|WP_004523706.1\|104650_105196_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP040532.1\|WP_004523712.1\|98068_98257_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275002.1\|96451_97909_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_011205336.1\|106221_108855_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP040532.1\|WP_004529623.1\|95248_95536_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275606.1\|109484_110141_+\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|378275
NZ_CP040532.1\|WP_080312632.1\|111845_112040_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004533804.1\|105260_105998_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP040532.1\|WP_085547108.1\|103471_104065_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284781
NZ_CP040532.1\|WP_004553068.1\|98268_98733_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004523719.1\|91721_92414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004529619.1\|92452_92767_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040532.1\|WP_004547793.1\|92806_92995_-\|hypothetical-protein	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	0.00411744
NZ_CP040532.1\|WP_011205336.1\|106221_108855_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP040532.1\|WP_004523716.1\|93703_95299_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NZ_CP040532.1\|WP_076836123.1\|92999_93623_-\|DUF2244-domain-containing-protein	gnl\|CDD\|378350	pfam10003, DUF2244, Integral membrane protein (DUF2244). This domain, found in various bacterial hypothetical and putative membrane proteins, has no known function.	6.78346e-37
NZ_CP040532.1\|WP_151275606.1\|109484_110141_+\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|378275	pfam09850, DotU, Type VI secretion system protein DotU. DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.	1.74375e-27
NZ_CP040532.1\|WP_004533804.1\|105260_105998_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	5.27556e-96
NZ_CP040532.1\|WP_085547108.1\|103471_104065_-\|hypothetical-protein	gnl\|CDD\|284781	pfam07437, YfaZ, YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.	9.21222e-18
NZ_CP040532.1\|WP_004551161.1\|101760_103248_-\|hypothetical-protein	gnl\|CDD\|226737	COG4287, PqaA, PhoPQ-activated pathogenicity-related protein [General function prediction only].	0
NZ_CP040532.1\|WP_004529637.1\|108847_109420_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.61685e-22
NZ_CP040532.1\|WP_004523706.1\|104650_105196_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	3.16404e-21
NZ_CP040532.1\|WP_041189449.1\|110143_111820_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	6.88028e-35

>NZ_CP040532.1|WP_004553068.1|98268_98733_+|hypothetical-protein
MGKDLFAIESQSQRAGLSTPHQKPTGFTKPLSIAQKNPRNAASRILDSLMRRAETPADMRHRRAGGEQALQLVACLPSEKAAGIPCRDESVQPCRQAVNKRVEVCGARRQGCIHHAGFMQAIRVSSLNAGRRSYLKSRTAFRRQWIKSVSRPPA
>NZ_CP040532.1|WP_004523712.1|98068_98257_-|hypothetical-protein
MRSLPAHAAESNHRCFARSSLEGEAIYAIPGLPAAQARQSHGRRSGTRARQSMHDYRALLRA
>NZ_CP040532.1|WP_151275002.1|96451_97909_-|hypothetical-protein
MPIRQTHIWIFGFVIACVLAMSGPLTYTFENTFQQTVDIDRKKQGTVEEATAFDARSAEQPSAPDADRMHELPRIDAARSPTDHFDELPIHLAAFGGGEPSPSGPLPPGPLPDTSFAPFPFQHGFDTAIHAGPPIPAPPESTLARTDAPPRDETPFEPGMPQPSETVDTQLSFYADMVAQAIERTAYDSIALAKLDSDTTAPPDMTPERHDALANMNAPMFYADMLTASIHVPPSHDRTLSVPSLLTHQAIGIAWMELFARELPATATQAAPTRHAVSFAATLQAEPFDLAQWSEPDEAHSDGPPLELDGQRTIAPPYPRAGTLPPGTRPTYTDSPPDTGIVQAAAMLATGFESAGKHAATLRGQPPGADECRMGARAIGLGRSGMERLAIEQFVSSARAAYDCARARIHGRASAFANAPASAQPSNHLDANGDPMRTAFLPRFASEPFQEAFSIPGDTAGIASACAVADDQTGHRNRMAAANSD
>NZ_CP040532.1|WP_143283097.1|95585_95819_-|hypothetical-protein
MHHRYAAQAAARFVVQPSREGWPIRRKPARHTHSSALASHRIHRKKHSRAARSAAHERLCRAPAPSTASRFFVPSAA
>NZ_CP040532.1|WP_004529623.1|95248_95536_+|hypothetical-protein
MMRGVAHVRHVRGDLAHCVVASFSKIRNGGRCAGCRHCVATAIFDALAALGRTSPCARGRLNDASRVAKTKRRSPLRAMRRGSLGRCPARRAADA
>NZ_CP040532.1|WP_004523716.1|93703_95299_-|cytochrome-c-oxidase-subunit-I
MSEISTNMPHVRDAAHHAPTGWRRWLFATNHKDIGTLYLLFSIVNLMIGGVMALMIRAELFEPGLQLMRPEFFNQLSTEHGFIMIFGAIMPAFVGLANWMIPLQIGASDMAFARMNNFSFWLLPVSSALLIGSFFVPGGAPAAGWTMYAPLSTQMGPGMDLSIFAIHIAGASSIMGAINIVVTVVNMRAPGLTLMKMPMFAWTWIITSFLLIAIMPVLAGAVTMVLFDRHFGTSFFNASGGGDPVLYQHIFWYFGHPEVYVMILPGFGMISQVIPAFSRKPLFGYASMVYATASIGILSFMVWAHHMFVTGMPVAGQLFFMYATMTIAVPTGVKVFNWVATMWRGSLTFETPMLFSIGFIFVFLIGGLTGVTLAMAPLNVALHGTYYIIAHFHYVMVAASLFSIYAGWYFWVPKWTGYFYDERRGRIHFWGSMISFNVTFFPMHFLGLAGMPRRYADYPAQFTDFNQIATIGAFAFGLMQVYFLFWVALPTYLGKTRRCVDAKPWDGAQGLEWTLPSPAPYHSFETPPAVK
>NZ_CP040532.1|WP_076836123.1|92999_93623_-|DUF2244-domain-containing-protein
MKADARCDTRKHAQRHCTPAFVAHDPRLMTRDVAENRRVWLLKRNCALSPRQSLISMGLLAALTLAIAMPFAIAGAWAVFACAIGEIAAMCGCFLLYARHAVDYDCVALTEQRLEVVQCDGAQLRRYDWNPLWVAVDLDAAHARDPTIRIRHGSETVLVGRHVTLARRRHVAGELNAALAASAGDFGDTDFAPSVRQRQPEPLAAHR
>NZ_CP040532.1|WP_004547793.1|92806_92995_-|hypothetical-protein
MKYTSGHYAGVKFGALYGFSNAANFADNRARRRMRGVRIRDRQERRDVRLPAALALCAARHR
>NZ_CP040532.1|WP_004529619.1|92452_92767_+|hypothetical-protein
MIAARIAPNRVGVARYPVEPRLSGVRCVVVRRPPLALAASAAQSARCFLVTSCRRGNGMTCRPIDAVPPPYPIRSVGSGACAASGSMATDSGFRSHRRSFAPPH
>NZ_CP040532.1|WP_004523719.1|91721_92414_+|hypothetical-protein
MNSQHARFIRPVLGTLCIVSLAALSGCRGDACFGFDGCFDDGGVQTVTLSGTAATGPALASATVNVDCARGSVATLSDGGGHYSVTFDAALPCAITVTSGGTSLHSLAYAGGTFNTTPQTELMLVYLAAQLGTSPARLIGDLPNSSRLQQALENQTNVQAAQTAVVANLQQRYAVMFAVPGFLTTPFFVGQPGVDGDLGALANAGAIDANGMPDALAVSLLQQAGAAHPL
>NZ_CP040532.1|WP_004551161.1|101760_103248_-|hypothetical-protein
MRNKVAGAIALSMLSLAYPRAEAAPIAFPCPIDARRDLTDTLACYRQTVENQPLNYTMTGIVQLPGIEQRTYRLVSQSWSPDQLVRPDTWVHEVALYIPQDALPRRALVIANDGTRHPGEGETPRTPNDFLPDTLADIARSTRTAVISVSDVPNQLLSYADDGKPKAEDDSVARSWTLFMQSPHTRGAMPLHVPMAASIWRAMSLAERELTSLGIHRFVVSGISKRAWTTWLALIGDQRVDAIAPFAIDLLSTRAALENMYRSYGGNWPLAFYPYYAEGIDRTLDSPAFGLLMRIEDPLSYLGTRHGSRLAVPKYIVNASGDDFFVPDNSQRYFDKLPGAKALRMVPNSSHSDIRRATLDSLVPFVKRIQHGKALPQVDAAPIETNGQTILRLRTSERPRQLLLWQATNPLARDFRYACGIRYTSTPIAMNGARPQQLVLVPPTNGWRAYFVEATFDDGFVATSQTYILGDGYPSTSPPAVGGSCRTLPGRDTHS
>NZ_CP040532.1|WP_038775249.1|103283_103499_+|hypothetical-protein
MAIVGEPPEELIDRLLRACRPLAPILPIAPMSQAKRRDERRVLQGKTWREMHRALVPFDRRTIQKEKPAAR
>NZ_CP040532.1|WP_085547108.1|103471_104065_-|hypothetical-protein
MSRTESSIFAKRPDWPRVFSKLGLVASSIGVFAFMPNARASDYSIAIGNGYQSVSRTPTGTGFGFLLDATRSGEDAYSIGPGLSFGVRIGTVSLTVAGKALHVRSADDRSGLTTPIGVIAGIPAASRLSLVARAFYTPRAVFNAALGAYTQATAGVRWTYKPINLEAGWRYEALKGRNGTRDTRLTNGPYLAAGFSF
>NZ_CP040532.1|WP_004523706.1|104650_105196_+|type-1-fimbrial-protein
MKKKVVSFAVATLFGLVAAQSVFAQSIDQGQVKFTGELTANTCTIDAGSKDQIVPLPKVSTSALAAPGDVAGSTAFEIKVSKCAADVKKVAAHFEMENMDPNTRTLKNEATGADAATNVTIQLVNSDGTELPVGSTGSYFDVTGTDDARGATMIYGGQYYALDTTTAGKVESHTLFTLAYE
>NZ_CP040532.1|WP_004533804.1|105260_105998_+|fimbria/pilus-periplasmic-chaperone
MRLWKMCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAGASPDEIKVPFVLMPPVFRVEPKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAEQNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRNEKGVSVLRAENRSPYYISISQATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE
>NZ_CP040532.1|WP_011205336.1|106221_108855_+|fimbrial-biogenesis-outer-membrane-usher-protein
MGEAPSGAEPGTRGRQALLVASHASPSAPTTVSFNSRLLMGGGIDLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGGDSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQTPTLSASACIGLRDALPDATYTLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASSLFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTGEIFESFGVRGMQLASDDRMLPVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPFEFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLRPGMQRFNFTVGQYRDALSNGKPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQGVRNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRARTRLQLNVNQRIGDRSSAYVSSSLLNYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSSDDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNGDSSIQANLSGSTAHVVPIDYGVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTLSPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVELANTSEEVVPRNNSIVFVKMETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQGGMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAKQSRAIVRIRLRCEPRLSADASQTPHGDGGTRND
>NZ_CP040532.1|WP_004529637.1|108847_109420_+|type-1-fimbrial-protein
MIEMNGLKFRRGAARRWPSIAAAAMFAASAACGAPPSPTVTIKFKGSYNPVTCTVVEGNENKTVHLPTISTSSLANAGETAGATGFDISVLCDGYAGNVLAYFENGPTTNENGNLDVEDPSDGQSASGVQVQLLNGDGSPIKVGDISTMKTVSVEASTPTPIPFFARYYATGKSGAGKVRTYVTFVIQML
>NZ_CP040532.1|WP_151275606.1|109484_110141_+|DotU-family-type-IV/VI-secretion-system-protein
MLLQDTMLHVALLTQGARISRVHDWRARCIALVRQFEQALQDGGYRSGIANELGLAQCVFLDEITMRNLSTEQKEEWLRELLQFRFHSIRDGLSKVRARIDRLCRGHSANAALLEMYSLFHEFDLLGDKQGHALADARVSEARPTPGKKAVETAEVWKDGGAANEAAHGRSWRIVSGLLAFAALMTMWLVIDTRLSHEVEQMEVTSGDEAAIHPASGD
>NZ_CP040532.1|WP_041189449.1|110143_111820_+|OmpA-family-protein
MSRQIRFWLVWGAIPFVVLASLCLPLRMQPEWSHVLTIVLVIAAIVLAIEIFEHSRETAQDRTAEAEIDDHELAVIIVAGPHASSLFNSSGDDTAFRREAGALWLRADSVEQLRDTMMRVKASRGRFPDAAVVPLVSESDDESDMRQAFAKWRTELREALCYPDAAYVLPCYLAVYTCLGFKGADGARPKWTGDAIEIGTRQMNAASKVGELLASIRQQLLRPSPTGSSAQCALGLGVFDWLDATALLSSMTMLANTPPFMLKGLTLADVGRRPIRPGAWTRWLTVRTGLHIRQTKSSMAPLPVPRVAKHAESGIREGWSSARHLVSTRASFVPALVFSTVSTLGIAVAVSGWMNSRMIQRVSNDIADYRSGADEWIGRKRFAQARLEHDRTAIVQTLLDGVPTGFGWGLYRGQELLVKLDTVLDSPRAASIAMQLDTVSLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADSSGSDAANFQLSEARARAIRDWFVDQGVLKTRFIVQGAGDTHPIADNDSPSGRAQNRRVEVLLIPDVASDRKASGTEL
>NZ_CP040532.1|WP_080312632.1|111845_112040_+|hypothetical-protein
MTPARVPIAQSISVEVQRRSDERAPRLRTCLSGEVRGAMRDAMRGAVRHASGHACIDSETFKLV

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Crispr_ID: NZ_CP040532_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040532_2

1491476-1491647

Orphan

Consensus_repeat	Method
GGCGGGCCGGCCGCCG---------------------------CGCGGGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040532_2

>merge|NZ_CP040532|2|1491476-1491647|PILER-CR
GGCCGCTCGGCCGCCGCGCGGGCGCGTGTTCCGCGTGGCGGCCTCCGCCGTGCCGGCCGCGGCGGCCGTGCGGAGCGGGCCGGCCGCCGCGGCGATGGTGGCCGCGCGGATCACGTGGATCAGGTGAATCACGTTGACGGCGTTGAACGGCGGGCCGGCCGCCGCGCGGGCG

>NZ_CP040532|2|1|1491476-1491647|PILER-CR
GGCCGCTCGGCCGCCGCGCGGGCG	CGTGTTCCGCGTGGCGGCCTCCGCCGTGCCGGCCGCGGCGGCCGTGCGG
AGCGGGCCGGCCGCCGCGGCGATG	GTGGCCGCGCGGATCACGTGGATCAGGTGAATCACGTTGACGGCGTTGAACGGCGGG
CCGGCCGCCGCGCGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040532.1\|WP_004199157.1\|1497749_1498421_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP040532.1\|WP_004537230.1\|1494557_1495070_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275265.1\|1495127_1495736_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275262.1\|1482790_1483009_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004197883.1\|1491763_1492372_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP040532.1\|WP_009925061.1\|1504446_1504761_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275264.1\|1492503_1494504_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP040532.1\|WP_151275266.1\|1498571_1499666_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP040532.1\|WP_011205540.1\|1485146_1485710_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240030
NZ_CP040532.1\|WP_004536578.1\|1495864_1497619_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226179
NZ_CP040532.1\|WP_004553376.1\|1487059_1488208_+\|DUF971-domain-containing-protein	unknown	unknown	gnl\|CDD\|274118
NZ_CP040532.1\|WP_004531806.1\|1486208_1487003_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|177970
NZ_CP040532.1\|WP_151275268.1\|1504779_1505424_+\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NZ_CP040532.1\|WP_004542833.1\|1481921_1482722_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP040532.1\|WP_151275267.1\|1499662_1502773_+\|multidrug-efflux-protein	unknown	unknown	gnl\|CDD\|169983
NZ_CP040532.1\|WP_004528318.1\|1483703_1484693_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|238211
NZ_CP040532.1\|WP_004528319.1\|1484694_1485150_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377443
NZ_CP040532.1\|WP_009971828.1\|1482947_1483688_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP040532.1\|WP_004528326.1\|1488403_1489240_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_CP040532.1\|WP_151275263.1\|1489964_1491455_+\|arginine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|163522

Protein	Function_ID	Function_description	E-value
NZ_CP040532.1\|WP_004199157.1\|1497749_1498421_-\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	5.95232e-60
NZ_CP040532.1\|WP_151275267.1\|1499662_1502773_+\|multidrug-efflux-protein	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP040532.1\|WP_151275268.1\|1504779_1505424_+\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	1.35224e-107
NZ_CP040532.1\|WP_004197883.1\|1491763_1492372_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	8.96274e-30
NZ_CP040532.1\|WP_151275264.1\|1492503_1494504_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP040532.1\|WP_151275266.1\|1498571_1499666_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.06237e-71
NZ_CP040532.1\|WP_011205540.1\|1485146_1485710_-\|NUDIX-hydrolase	gnl\|CDD\|240030	cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.31608e-51
NZ_CP040532.1\|WP_004536578.1\|1495864_1497619_+\|amidohydrolase-family-protein	gnl\|CDD\|226179	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism].	8.33569e-153
NZ_CP040532.1\|WP_004553376.1\|1487059_1488208_+\|DUF971-domain-containing-protein	gnl\|CDD\|274118	TIGR02409, Probable_gamma-butyrobetaine_dioxygenase, gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.	1.28511e-47
NZ_CP040532.1\|WP_004531806.1\|1486208_1487003_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|177970	PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.	1.10688e-44
NZ_CP040532.1\|WP_004542833.1\|1481921_1482722_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	4.72971e-126
NZ_CP040532.1\|WP_004528318.1\|1483703_1484693_-\|thymidylate-synthase	gnl\|CDD\|238211	cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa, a single polypeptide chain codes for both, dihydrofolate reductase (DHFR) and thymidylate synthase (TS), forming a bifunctional enzyme (DHFR-TS), possibly through gene fusion at a single evolutionary point. DHFR-TS is also active as a dimer. Virus encoded dCMP-HMase catalyzes the reversible conversion of dCMP and CH2THF to hydroxymethyl-dCMP and THF. This family also includes dUMP hydroxymethylase, which is encoded by several bacteriophages that infect Bacillus subtilis, for their own protection against the host restriction system, and contain hydroxymethyl-dUMP instead of dTMP in their DNA.	1.30878e-53
NZ_CP040532.1\|WP_004528319.1\|1484694_1485150_-\|hypothetical-protein	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	6.6851e-05
NZ_CP040532.1\|WP_009971828.1\|1482947_1483688_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	9.58136e-27
NZ_CP040532.1\|WP_004528326.1\|1488403_1489240_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	3.6885e-23
NZ_CP040532.1\|WP_151275263.1\|1489964_1491455_+\|arginine-ornithine-antiporter	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	0

>NZ_CP040532.1|WP_151275263.1|1489964_1491455_+|arginine-ornithine-antiporter
MKHSVRHPFHPSTPLPARISAPLRAAAPRQLPFALLTALVIGSMIGSGIFSLPQNMASGAGAGAIVIGWAITGVGMLMLALVYQTLAHRKPELDNGVYAYAHASAGDFVGFNSAWGYWVSAWIGNVGYLVIVFGTLGYAFPAFGDGNTRAAVIGASIVLWIMHAVILRGVRGAAILNALTTIAKIVPLVLFVALAALAFQPHRFTTDFWGNVHLPGVLDQVKSTMLITVWVFIGIEGASVYSARAKNRDDVGRATIVGFVVVLLLLMAVSLLSLGIVSQPELAAMKNPSMAGVLEKAIGRTGVAIAGVGLLVSVGGALLAWTLLAAEAMFTPAKDGVMPAFLSRENAHGVPANALWATNGLVQLFLLVTLVSNATYQALISLATSMILVPYLFSAVYALVIAIKGEGYAPGEAVRVRDATIGAVATVYCCWLLYAAGPKYLLLSALLYAPGALLYAWAKRERGEQPFKPFEAAILIALVAFASLAGWLVAAGRISL
>NZ_CP040532.1|WP_004528326.1|1488403_1489240_-|EamA-family-transporter
MTPSVIALVLFAAILHATWNALLKSGADRLWSLTVMSFATTAAAAVCAALLPLPARASWPYLAASAALQVGYSVFLALAYQRAALGQVYPVVRGAVPLLVTLGGYAWAGQRLGGAPLAGIALVSGGIASLALGRTRIHSRALAAALATALFIGGYVTIDGLGARVAGHPLAYAAWIFIVYGAAMPAVFLLLGRRPRAGLPRGDTLKSAAGGLISLIGYAAVVDALSRGPVGPIAALRETSIVFSALIGWLWLGEKPSGPRFAACAAVALGAACLAYAA
>NZ_CP040532.1|WP_004553376.1|1487059_1488208_+|DUF971-domain-containing-protein
MLTSHSDHLQIDWETGRSSRYHWVWLRQACECADCFNAHCRQRRFDPAAIAPGIRPERVLLDAHGVRIVWQDAHVSTYALERLARDDYREAIPPVAAAGWTPWPERGAPSASHFAIGDVLDSDAALRRALNQLFESGLVVLKAGDGAAPPFDAVRERLAGFLEPSYFGDFFDLEVKADDATDSVSFSTSALPLHTDIPYCSPPPDYQFLYGLDVDPRCAREQVGCTRFVDGWAVLRELRDASPEMFERLARTRVVYRADYPGARKRYEHRTPIVRLRADGTVERLINNPTKMFFDGIGFDELMPFFRAYHAFKARLVATRRSYLHAWTQGDMVVWDNRRIFHGRGDFGAPGIVRTLRGGYFREGELRARDAFLAAAGERAAG
>NZ_CP040532.1|WP_004531806.1|1486208_1487003_+|methyltransferase-domain-containing-protein
MQTHTVGLSSEYEAQRYSNAHNILRSEIIYGDGFQSPGGIEGFRTMLAENMAIEPGMRLLDIGSGLGGAAFHLASRFDVTVVGLDTAPRMTELATARQPALDPHARVRFVNGDVHAEALAGERFDIIYSRDALMYVHDKPRLFARCHALLATRGRLYVTDFCRGRASPAFDAYASVSGYDLRTIDDYARIVADAGFDVLSARDVSDDARRQLRGDLDRYEARVAARDPSIDPLDAEHIVERWRRKIGFVDEGCLLQGLFVAQRR
>NZ_CP040532.1|WP_011205540.1|1485146_1485710_-|NUDIX-hydrolase
MEAANGRRLARRGRTNGARRQGRGCGASTMTDPKGTGDAALATPRVAVIAVTFRGDDVILVRRGKEPQKGTWGFPGGSVEPGECLREAAARELFEETGVRAEVGEPFDVVEVIGFDPHGRHHHYVLVAMLCRHVEGALRPGDDATDCRWVRVPADLSRFPGALADHVARVAQRAHALNHPNRKENSR
>NZ_CP040532.1|WP_004528319.1|1484694_1485150_-|hypothetical-protein
MKRMFLGGPFKSLVDKQTGVMPEGSINLFRRVIDHFEARGWDVHCAHRREHWGREFMTPDVCTKTDYEQISLCDYFVAFPGAPASPGTHIELGWASALGKPIVLLLEADKEYAYLVRGLDEITRIERVEFSGDRIDPVAIEAAIGRFDARG
>NZ_CP040532.1|WP_004528318.1|1483703_1484693_-|thymidylate-synthase
MLRYPGLSELYLATLRDVCGAYEYRSAPRGHAEREIIGYGARIDDPRARFCRHAARKQNVVFNYAEALWYLSGRNDLEFIAHYAPSMARYSPDGKHLPGTGYGARLLHYGERGLDQIERALDILSRDDAESKRVVLQIFSADEELYRRNIDVSCTLGLQLLLREGRLHMVAFMRANDAYIGLLNDVFSFTFLQEYLASRLGCELGTYAHQVGSIHVYDDNLPRVQALLDDSDAAIVTAAAPPRMPAGTRAATIARVLEHEGRIRAGRVSLAALRDIDLDPYWRDVLGLFWIYREIKAGNPPPDEALAFVGPFHRAYLMNRWDMASASLQ
>NZ_CP040532.1|WP_009971828.1|1482947_1483688_-|methyltransferase-domain-containing-protein
MKTDWTEHEVSQRFHAYDDRIEARFGYQPLIAELTGSHGTAIRVLDYGCGGGKVARRLRAAGVARVTGVDIAPTMIEQAIAAGVDDGLDYVHIDGPSLPFDDASFDAAISCFLFVNIAERAALARVAAEVRRVLKPGGAYYVLDTNPRTTGVQYPTFRNGEPGIVYRDGDARPVHLSVPGEGVFDVVDTHWEIPTYRHAFETAGLALAAVMELGFRAADAGGAPGAHADADGSKPFVLFKATRPPR
>NZ_CP040532.1|WP_151275262.1|1482790_1483009_-|hypothetical-protein
MRTPTAASRSCCSRQPGRRADARAAAHARCARGGSNAAAARARPHGPRSPDDGREPAADAAAAGPTDGPPTT
>NZ_CP040532.1|WP_004542833.1|1481921_1482722_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MIANVLTIAGTDPTGGAGIQADLKAFSAMRAYGMAAITAVVAQNTTGVRSFRALDPAFVADQIDAVFDDVAVHAVKIGMIATAAIAEAVAAALVRHRAAPVVLDPVMVAKSGDRLLDPDAVDAIRDKLVPISTLITPNLPEAGVLLGRSEPRTLAEMHAAAAELHALGSRWVLLKGGHLAGERSVDVLRGPAAATVELSAPRVATNNDHGTGCTLSAAIAALLPSHSVEDSVCQAKAYLSDALAASGELEVGRGHGPVHHFHALWN
>NZ_CP040532.1|WP_004197883.1|1491763_1492372_+|rhomboid-family-intramembrane-serine-protease
MTLAIVVLNVIGFLVELAAPERVLSLFALWPPRAGAGLPPAAAPAFHVWQLVTYSALHAGLSHLLFNMLGLVMFGRDVERALGRARFGTLYLASVVCGALTQLALARYSAAAAAPTIGASAGVFGVLAAYALLYPSRRVVLLIPPIPMRAWVFALLYAGGELLLGVAGAASGIAHFAHLGGMFGAIALMLAWGRPRSEWPVQ
>NZ_CP040532.1|WP_151275264.1|1492503_1494504_-|ATP-dependent-zinc-metalloprotease-FtsH
MKSETGYMGFVVVLVFMVLLALQLATLSAPATQIAYSDFRKLAAAAQLDDLEVSPTRITGVLRSASAAAALPASDAEAIKRAGTPWRFSTKRVTDERLIDTLAATGTRYRGADDDTWIGTLASWIVPIAVFALVWNLMLRRPRGGLQDWSGVGKSKPRVYVEAKTGIDFDDIAGIDEAKAELQQIVAFLRAPARYQRLGGKIPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCIIFIDELDALGKVRGAGLASGNDEREQTLNQLLVEMDGFQANSGVILMAATNRPEILDPALLRPGRFDRHIAIDRPDLTGRRQILSVHVKHVKLGPDVDLGELASRTPGFVGADLANIVNEAALHAAEFDKPAIDMSDFDEAIDRAMTGMERKSRVMSEREKITIAHHEAGHALIAQTRAHSDPVKKVSIIPRGIAALGYTQQVPTEDRYVLRKSELLDRLDVLLGGRVAEEIVFGDVSTGAENDLERATEMARHMVARYGMSERIGLATFGDADTQGLSPLVWQRGGERCSESTATRIDDEIQRLLAEAHDRVSRTLKERRGALERIAGYLLEHEVVDHDKLVRLVNDEPTPEPGARDPGGDAAKRSGIAAAPAKPPAEVGSAELRDPARKADNADHSVPQ
>NZ_CP040532.1|WP_004537230.1|1494557_1495070_-|hypothetical-protein
MIYGSNELYAAMRQRRDRLPRAHPADGYGAPARLKSGMGCTECGALYDDGRWSWHAAAGALLQIVCPACRRIRERASAGELVLEGGYFARRRDDIVALLRRHAGDDINARPLGRILSIDALPARMVVRTKGSPLVHRLTEALVRTHRGDLEIDYREGEDTLRAHWMRDAA
>NZ_CP040532.1|WP_151275265.1|1495127_1495736_+|hypothetical-protein
MRGRRRNRGIAGMRSMAVRGATYTTEHRRSPARAIDADQRSATSRRFARADWCGFVANRSEPARSPMPAADSRVRAGRGRARVVAASGRIPAVTRSRACRHGVRPMKVSGARRASAAAAYPVAPRPRSRPAGDAAVQHAVARVAAARRRRGRGSAEPMPHEGAARSGARSRDHARRACCVRRARASDESMRRFEAMLACNSS
>NZ_CP040532.1|WP_004536578.1|1495864_1497619_+|amidohydrolase-family-protein
MTRYDTIIRNGLWFDGTLAEPRPRELGIRDGRVAAVSDTPLAADGASVIDATGKWVMPGFIDIHTHYDAEILVSPGLPESVRHGVTSVFLGSCSLSTVHANALDCTDLFSRVEALPREQMLAVLSRVKTWDTAAAYVRHLESLPLGPNVAAFLGHSDLRTHVLGLGRAVDDRVRPHEAELQRMERLLDDALDAGFVGLSSMTTPWDKLDGERYRSKSLPSTFATWREYRRLNRVLRRRGRVLQSAPNTTNPLNGLLFMAESCGYFVRKPLRTSLLVAADSKAAPRGTIDVQLGGVRVANALFRGELVWQHLPVPFEVYADGIDFVIFEEFGAGRAALHLADALERNKLLQNEGYRREFRRQVGKGFDLRLWTRDLHDTRIVGCPDASVVGKSFGQVANERGVHPADAFLDLVVAHGQRLRWCMTIANHRADVLDRIATHPALQIGFADSGAHLRNMAFYNAPVRFLRRVREAERAGRPFMSVQQAVHRLTGELGAYFGVDAGTLRAGDRADIAIVDPAHLDASVDAYHEEDMAVFGGLRRLVNRSGAAIAATLVNGQLVYRDGAFAEGFGDTRRSGRFLRAAAR
>NZ_CP040532.1|WP_004199157.1|1497749_1498421_-|transcriptional-regulator
MDDNFSKQEIPVSERVLNVLKRRGPLQAAELGAYLGTTGEAARQQLKKLEAEGLVEAQNVPQGVGRPARIWRLTSLGHGHFPDAHADMTVDLIRIIRTTLGQPTLDLLIAARETEMRRTYAHTLAGVTDPEERIARLAELRDREGYFAEWSRAPDGDGWLFIENHCPICAAATACQGFCRSELEIFREMLGDALTIERIEHIPAGARRCAYRIRPSGAGAGGE
>NZ_CP040532.1|WP_151275266.1|1498571_1499666_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MGRRLLLALALLVFIFGGLFLWRESRVQAADHPPPPAALTVSAVAVRAAPERVTLDAVGSLDAVRQVTLAPEVAGRVVALQFDAGSAVRKGQLIVQLFDEPERAKLASIQAKAAYAKRQLDRSQALAQTGAEPRNLFDRHRFDFDAAAADIRETQAVITQKAVRAPFDGVLGLRRVNLGQYLNAGDAIATLTDLDTLYANFTVPQKNLSQLRLGQSVSITTDAYPERTLVARVSAIEPQIGTDTRNVAVQATLPNPDHLLRPGMYIQARLELPPREHALTVPDTAVQTSQRGESVLVVGKPGRDRLGVVRLQPVRTGRRADGRIAIADGLRPGDVVVTSGQVRLAAGDRVKVALDDGAGSGAAQ
>NZ_CP040532.1|WP_151275267.1|1499662_1502773_+|multidrug-efflux-protein
MNAGAPHDSGAARARFTDVFVRRPVLSLVFSLLILLVGLRALMSLPVRQYPALESATISVATDYPGASQELMQGFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKAQQVKYKLPADAYDSVITKLTDAPTAVMYLGFASDALSIAQITDYVVRVAQPLVTTVPGVASAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANTDLTDVGAFNEMVVKSAPNGGGLVRLKDVATVEIGGENYNSSALMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHAYRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDYMERYAPDIERVFRTLPEADTSFILNSYGGSNLGFAGVNLVDWDKRTRSAAALQALIQARGDGIRGERVFAFQLPALPASSGGLPIQMVLRTPSGFADLYAQMERIKAAAQKSGLFAVLDSDLTFDSRAVGVTIDRNQANTLGVTMKDIADTLAVLVGENYVNRFNFKGRSYDVIPQVSRSERLSSEMLSRYYVKTASGQMIPLSTVIQVTNGSQANALSQFNQMNAATFSEVPAPGVTMGDAVAFLEAQKLPAGFSIDWLGESRQYVQEGNRLAVTFGFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGLISKHGILMVSFANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGAGAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAKDHGAAMRSERAQLLAATR
>NZ_CP040532.1|WP_009925061.1|1504446_1504761_+|hypothetical-protein
MSAQPDMRQPNARQHSARRPSAARAGRERIGRTWRTKKKTDREMIGDTVIGTDAQSAMLLHNRTQQPIKSSPRTRETATKRKSIQAFDITIQKLPCSSRCVSQC
>NZ_CP040532.1|WP_151275268.1|1504779_1505424_+|GTP-cyclohydrolase-II
MNDGRISPTMSASVRTRVNVPIRPRTAQQRFDAEMVTFQGLCDSAEHLALVFGPLADAPLVRVHSECLTGDVFGSARCDCGEQLDESVAMFGREGGILLYLRQEGRGIGLYNKLDAYRLQISQSLDTFAANRALNFPDDLRDFRVAAQMLQALGVTEISLVTNNPDKVSQIEKHGIRIRRVLQTGVFVNTTNHGYLRAKIDHHRHAINLSQELQ

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Crispr_ID: NZ_CP040532_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040532_3

2625608-2625702

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040532_3

>merge|NZ_CP040532|3|2625608-2625702|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NZ_CP040532|3|1|2625608-2625702|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040532.1\|WP_004529175.1\|2617586_2617745_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004187193.1\|2625920_2626169_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP040532.1\|WP_151275498.1\|2615651_2617487_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP040532.1\|WP_151275501.1\|2633248_2634427_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP040532.1\|WP_004555134.1\|2626165_2626867_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP040532.1\|WP_151275496.1\|2608535_2610062_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103
NZ_CP040532.1\|WP_004549747.1\|2626863_2627172_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP040532.1\|WP_151275497.1\|2610058_2611132_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP040532.1\|WP_004188221.1\|2627649_2628105_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP040532.1\|WP_050020039.1\|2631821_2633252_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP040532.1\|WP_004524981.1\|2629655_2629913_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275499.1\|2622345_2623191_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP040532.1\|WP_045243597.1\|2620509_2621013_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004548632.1\|2630044_2631838_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NZ_CP040532.1\|WP_004198321.1\|2621089_2622115_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP040532.1\|WP_151275500.1\|2628094_2629684_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP040532.1\|WP_004524990.1\|2617836_2619402_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP040532.1\|WP_004546783.1\|2614377_2615502_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP040532.1\|WP_151275662.1\|2635149_2636091_-\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP040532.1\|WP_004524989.1\|2619942_2620452_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040532.1\|WP_004187193.1\|2625920_2626169_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP040532.1\|WP_151275498.1\|2615651_2617487_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.86846e-132
NZ_CP040532.1\|WP_151275501.1\|2633248_2634427_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP040532.1\|WP_004555134.1\|2626165_2626867_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	4.76435e-122
NZ_CP040532.1\|WP_151275496.1\|2608535_2610062_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	6.17624e-99
NZ_CP040532.1\|WP_004549747.1\|2626863_2627172_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	3.91378e-10
NZ_CP040532.1\|WP_151275497.1\|2610058_2611132_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.59557e-39
NZ_CP040532.1\|WP_004188221.1\|2627649_2628105_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP040532.1\|WP_050020039.1\|2631821_2633252_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP040532.1\|WP_151275499.1\|2622345_2623191_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	5.84357e-29
NZ_CP040532.1\|WP_004548632.1\|2630044_2631838_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.95969e-179
NZ_CP040532.1\|WP_004198321.1\|2621089_2622115_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP040532.1\|WP_151275500.1\|2628094_2629684_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP040532.1\|WP_004524990.1\|2617836_2619402_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP040532.1\|WP_004546783.1\|2614377_2615502_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.30959e-25
NZ_CP040532.1\|WP_151275662.1\|2635149_2636091_-\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.92466e-106

>NZ_CP040532.1|WP_151275499.1|2622345_2623191_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVPPRAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEVTERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP040532.1|WP_004198321.1|2621089_2622115_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGATFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP040532.1|WP_045243597.1|2620509_2621013_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREARAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_CP040532.1|WP_004524989.1|2619942_2620452_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP040532.1|WP_004524990.1|2617836_2619402_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP040532.1|WP_004529175.1|2617586_2617745_+|hypothetical-protein
MRARRSHGAGIRLGFDKPSGAHSSTHDGWVQTDIAMRLLQISLMPDQALANE
>NZ_CP040532.1|WP_151275498.1|2615651_2617487_+|response-regulator
MHVEVFAQHSSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLASAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRVKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRARGARHAQADPRAKTAAARVQR
>NZ_CP040532.1|WP_004546783.1|2614377_2615502_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMNAGDFTFVLDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP040532.1|WP_151275497.1|2610058_2611132_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKNDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVPQ
>NZ_CP040532.1|WP_151275496.1|2608535_2610062_+|efflux-transporter-outer-membrane-subunit
MTMRNDARHDERHQRRRGIARRARRHAAALALCAAVSGCLSLAPDYARKPPPVPAAYPAYPGEPGAGSRTLEQLGWRAYFVDPRLQALIETALANNRDLRIAAQRVEQARAAYGIRRADQYPTIAANAAYLRFREPGGLLLPSPIIGELYSASLSEVQWEIDFWGRVRSLKAAALDTFLASDASRRAVTVSLIGQVADAYLALCAYDERLALTNETIASRRDSLRIFRRRYEEGAISKLDLTQSEILLQQAQTLGSQLQQARDVQQHALDLLVGTNAAARTPASLDDASIAPDLAPGLPSELLANRPDVVAAEYQLRAAHANIGAARAAFFPRIALTSSIGTGSTELHNLFASGTAAWNFIPNLSVPIFDAGRNIGNLKLANARRDEALAQYEKTIQTAFRDVADALAARHWLADQVRIAQETLATQAERARLAKLRYDSGAARFLEVLDAQRDLLNAQQQLVQTRRALLASRVALYAALGGRLDEPARDGAAPRPSPEPSAKQGPLS
>NZ_CP040532.1|WP_004187193.1|2625920_2626169_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP040532.1|WP_004555134.1|2626165_2626867_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVAAVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP040532.1|WP_004549747.1|2626863_2627172_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFAAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP040532.1|WP_004188221.1|2627649_2628105_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP040532.1|WP_151275500.1|2628094_2629684_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVIDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAARAADARREAAAAASVAGPGTTSDPASGSAEPQGARHGR
>NZ_CP040532.1|WP_004524981.1|2629655_2629913_+|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NZ_CP040532.1|WP_004548632.1|2630044_2631838_+|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASVTLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NZ_CP040532.1|WP_050020039.1|2631821_2633252_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP040532.1|WP_151275501.1|2633248_2634427_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLAEPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA
>NZ_CP040532.1|WP_151275662.1|2635149_2636091_-|1-phosphofructokinase-family-hexose-kinase
MPEIVTLTPNPAIDVATCVERVTDTRKLRCGPARRDPGGGGINVARVLTRLGADCSAVYLAGGGTGLALRGLLADEGVRAHGIDIAGETRENFSVLETSTGREFRFRLPGPALAGHEWPRCVEALGRLADASRYLVMSGSLPPGMPDDCYARLARRASARGVRTVVDTSGPALAAALDAGVYLVKPSLGELRALTGLPLEDDGARLAAARAIVAGGRAQIVALTLGDAGALVVSRDDAVRLPGVKVAVRSAIGAGDSFVAGLVAALNRGANVADAARHALAAASASLLSTGTALGTKEDIARIYRELPGMIDA

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Crispr_ID: NZ_CP040532_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040532_4

3052438-3052583

Orphan

Consensus_repeat	Method
GCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040532_4

>merge|NZ_CP040532|4|3052438-3052583|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCG

>NZ_CP040532|4|2|3052438-3052583|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	ACCCGATCA
TCGGGATGCTCGATCGCCG

>NZ_CP040532|4|2|3052488-3052573|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040532.1\|WP_004523288.1\|3046849_3047053_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004552281.1\|3063062_3063716_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP040532.1\|WP_151275581.1\|3054701_3056486_+\|ribonucleotide-reductase-like-protein	unknown	unknown	gnl\|CDD\|180772
NZ_CP040532.1\|WP_151275675.1\|3046334_3046766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004556361.1\|3049007_3051281_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP040532.1\|WP_004530663.1\|3062159_3062609_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP040532.1\|WP_004205322.1\|3045224_3046160_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP040532.1\|WP_151275583.1\|3059855_3061688_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP040532.1\|WP_129112008.1\|3054542_3054725_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275580.1\|3052929_3053115_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_009927403.1\|3044987_3045098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_004196898.1\|3043069_3043510_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP040532.1\|WP_151275582.1\|3058827_3059859_+\|nitroreductase	unknown	unknown	gnl\|CDD\|236122
NZ_CP040532.1\|WP_004187469.1\|3051413_3051809_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP040532.1\|WP_076839131.1\|3047065_3048724_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP040532.1\|WP_004529498.1\|3063783_3064218_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP040532.1\|WP_004200700.1\|3043811_3044927_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP040532.1\|WP_004545430.1\|3062685_3062913_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275674.1\|3042678_3042984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040532.1\|WP_151275584.1\|3064297_3064612_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040532.1\|WP_151275581.1\|3054701_3056486_+\|ribonucleotide-reductase-like-protein	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP040532.1\|WP_004556361.1\|3049007_3051281_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	4.74784e-57
NZ_CP040532.1\|WP_004530663.1\|3062159_3062609_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.14402e-50
NZ_CP040532.1\|WP_004205322.1\|3045224_3046160_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.67997e-62
NZ_CP040532.1\|WP_151275583.1\|3059855_3061688_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.99634e-106
NZ_CP040532.1\|WP_004196898.1\|3043069_3043510_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	3.1145e-25
NZ_CP040532.1\|WP_151275582.1\|3058827_3059859_+\|nitroreductase	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	2.28646e-30
NZ_CP040532.1\|WP_004187469.1\|3051413_3051809_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP040532.1\|WP_076839131.1\|3047065_3048724_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	9.5934e-37
NZ_CP040532.1\|WP_004529498.1\|3063783_3064218_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP040532.1\|WP_004200700.1\|3043811_3044927_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NZ_CP040532.1\|WP_004552281.1\|3063062_3063716_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	4.23582e-20

>NZ_CP040532.1|WP_004187469.1|3051413_3051809_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP040532.1|WP_004556361.1|3049007_3051281_-|pyridine-nucleotide-disulfide-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPNVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKMKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP040532.1|WP_076839131.1|3047065_3048724_+|GMC-family-oxidoreductase
MKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLHGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NZ_CP040532.1|WP_004523288.1|3046849_3047053_-|hypothetical-protein
MIVRTGPRARRCTNGSSPCFPAGRRCAMRRTACAAWSRAFPRLFAHPDRGGARRARRRDPRPLTRTP
>NZ_CP040532.1|WP_151275675.1|3046334_3046766_+|hypothetical-protein
MHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIHERIEHKARPDVRRAERPISQDVAQTPIGAAGAISPSTARSIFLEIGLALAGRPIQVRRNRAPFYHGTPRRRPARGPTARTASPAPV
>NZ_CP040532.1|WP_004205322.1|3045224_3046160_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCGEHAPA
>NZ_CP040532.1|WP_009927403.1|3044987_3045098_-|hypothetical-protein
MQSTGSFDISARRMIEFRSVNKSNHDCPLEKSSGLL
>NZ_CP040532.1|WP_004200700.1|3043811_3044927_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP040532.1|WP_004196898.1|3043069_3043510_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP040532.1|WP_151275674.1|3042678_3042984_-|hypothetical-protein
MRHDSRLRCTRDDDDIDQCHRQSGRSPLDAEPNRGCAARRLRASGGRRPRGANTEPRRRKPHARVIRQRSWRAARTRPCRRFSAACGRFGQTMARRARPPA
>NZ_CP040532.1|WP_151275580.1|3052929_3053115_-|hypothetical-protein
MAHAACAARAAVGEPLARGRRPSSVSGTETPAVAKRGSDGGGRAFAATQRIVSDAHRIGTA
>NZ_CP040532.1|WP_129112008.1|3054542_3054725_-|hypothetical-protein
MVVHVADHADERIGVGNGARAFVDRPQAACASRAVRRAARGAVRRAVRRAARQATWRVVR
>NZ_CP040532.1|WP_151275581.1|3054701_3056486_+|ribonucleotide-reductase-like-protein
MIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADRLRGRERIDATSRCGAQPLPPYGSAMLGAIDLSRFVRNPFSAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGESAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP040532.1|WP_151275582.1|3058827_3059859_+|nitroreductase
METSPLETTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NZ_CP040532.1|WP_151275583.1|3059855_3061688_+|STAS-domain-containing-protein
MTERERAARGRNDGRRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAQVVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEADAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP040532.1|WP_004530663.1|3062159_3062609_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKDVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP040532.1|WP_004545430.1|3062685_3062913_-|hypothetical-protein
MAAGCVCVAGNELARSLRFGAVRFRPRAAAHGPAGATAWAVRRGDAAREAASAFCGGGNPEPGSGKQKAAKPKAA
>NZ_CP040532.1|WP_004552281.1|3063062_3063716_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDVYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP040532.1|WP_004529498.1|3063783_3064218_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP040532.1|WP_151275584.1|3064297_3064612_+|hypothetical-protein
MIDDADRLNVGYLQRSGTSTPGIDVSQSAAIGGNRAAGGGNRAAITPQSGRRPHGRPRGRSGPPSPPNRRRRLGGGRSIGEHAAFPRRKPESADGGRSGRRTGE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040531.1	268064-268082	1	0.947
NZ_CP040532_1	1.2\|99705\|19\|NZ_CP040532\|CRT	99705-99723	19	NZ_CP040532.1	1793931-1793949	2	0.895
NZ_CP040532_1	1.2\|99705\|19\|NZ_CP040532\|CRT	99705-99723	19	NZ_CP040531.1	268064-268082	2	0.895
NZ_CP040532_1	1.2\|99705\|19\|NZ_CP040532\|CRT	99705-99723	19	NZ_CP040531.1	3622233-3622251	2	0.895
NZ_CP040532_1	1.4\|99789\|19\|NZ_CP040532\|CRT	99789-99807	19	NZ_CP040531.1	1739264-1739282	2	0.895
NZ_CP040532_1	1.8\|99957\|19\|NZ_CP040532\|CRT	99957-99975	19	NZ_CP040531.1	2527859-2527877	2	0.895
NZ_CP040532_1	1.9\|99999\|19\|NZ_CP040532\|CRT	99999-100017	19	NZ_CP040532.1	2415162-2415180	2	0.895
NZ_CP040532_1	1.11\|100083\|19\|NZ_CP040532\|CRT	100083-100101	19	NZ_CP040532.1	2415162-2415180	2	0.895
NZ_CP040532_1	1.13\|100167\|19\|NZ_CP040532\|CRT	100167-100185	19	NZ_CP040532.1	1793931-1793949	2	0.895
NZ_CP040532_1	1.13\|100167\|19\|NZ_CP040532\|CRT	100167-100185	19	NZ_CP040531.1	268064-268082	2	0.895
NZ_CP040532_1	1.13\|100167\|19\|NZ_CP040532\|CRT	100167-100185	19	NZ_CP040531.1	3622233-3622251	2	0.895
NZ_CP040532_1	1.15\|100251\|19\|NZ_CP040532\|CRT	100251-100269	19	NZ_CP040532.1	1793931-1793949	2	0.895
NZ_CP040532_1	1.15\|100251\|19\|NZ_CP040532\|CRT	100251-100269	19	NZ_CP040531.1	268064-268082	2	0.895
NZ_CP040532_1	1.15\|100251\|19\|NZ_CP040532\|CRT	100251-100269	19	NZ_CP040531.1	3622233-3622251	2	0.895
NZ_CP040532_1	1.19\|100419\|19\|NZ_CP040532\|CRT	100419-100437	19	NZ_CP040532.1	2415162-2415180	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040532.1	87075-87093	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040532.1	1407638-1407656	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040532.1	1606122-1606140	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040532.1	1633572-1633590	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040532.1	1793931-1793949	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040532.1	1799560-1799578	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040532.1	2288865-2288883	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040531.1	16122-16140	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040531.1	363694-363712	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040531.1	2852583-2852601	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040531.1	2928926-2928944	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040531.1	3132138-3132156	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040531.1	3205954-3205972	2	0.895
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NZ_CP040531.1	3343532-3343550	2	0.895
NZ_CP040532_1	1.33\|101007\|19\|NZ_CP040532\|CRT	101007-101025	19	NZ_CP040532.1	1225284-1225302	2	0.895
NZ_CP040532_1	1.33\|101007\|19\|NZ_CP040532\|CRT	101007-101025	19	NZ_CP040531.1	2087248-2087266	2	0.895
NZ_CP040532_1	1.34\|101049\|19\|NZ_CP040532\|CRT	101049-101067	19	NZ_CP040531.1	522080-522098	2	0.895

1. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 268064-268082, mismatch: 1, identity: 0.947

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgtcgagcacgtcg	Protospacer
**********.********

2. spacer 1.2|99705|19|NZ_CP040532|CRT matches to position: 1793931-1793949, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgcgcacctcg	Protospacer
********** **** ***

3. spacer 1.2|99705|19|NZ_CP040532|CRT matches to position: 268064-268082, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgagcacgtcg	Protospacer
**********.****.***

4. spacer 1.2|99705|19|NZ_CP040532|CRT matches to position: 3622233-3622251, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgagcagatcg	Protospacer
**********.*** ****

5. spacer 1.4|99789|19|NZ_CP040532|CRT matches to position: 1739264-1739282, mismatch: 2, identity: 0.895

cactgcgtcgggtgaatcg	CRISPR spacer
cactgcatcgcgtgaatcg	Protospacer
******.*** ********

6. spacer 1.8|99957|19|NZ_CP040532|CRT matches to position: 2527859-2527877, mismatch: 2, identity: 0.895

caccgcgtcgggcacatca	CRISPR spacer
caccgcgtcgagctcatca	Protospacer
**********.** *****

7. spacer 1.9|99999|19|NZ_CP040532|CRT matches to position: 2415162-2415180, mismatch: 2, identity: 0.895

caccgcgtcgggtgaatcg	CRISPR spacer
caccgcgtcggggcaatcg	Protospacer
************  *****

8. spacer 1.11|100083|19|NZ_CP040532|CRT matches to position: 2415162-2415180, mismatch: 2, identity: 0.895

caccgcgtcgggtgaatcg	CRISPR spacer
caccgcgtcggggcaatcg	Protospacer
************  *****

9. spacer 1.13|100167|19|NZ_CP040532|CRT matches to position: 1793931-1793949, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgcgcacctcg	Protospacer
********** **** ***

10. spacer 1.13|100167|19|NZ_CP040532|CRT matches to position: 268064-268082, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgagcacgtcg	Protospacer
**********.****.***

11. spacer 1.13|100167|19|NZ_CP040532|CRT matches to position: 3622233-3622251, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgagcagatcg	Protospacer
**********.*** ****

12. spacer 1.15|100251|19|NZ_CP040532|CRT matches to position: 1793931-1793949, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgcgcacctcg	Protospacer
********** **** ***

13. spacer 1.15|100251|19|NZ_CP040532|CRT matches to position: 268064-268082, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgagcacgtcg	Protospacer
**********.****.***

14. spacer 1.15|100251|19|NZ_CP040532|CRT matches to position: 3622233-3622251, mismatch: 2, identity: 0.895

caccgcgtcgggcacatcg	CRISPR spacer
caccgcgtcgagcagatcg	Protospacer
**********.*** ****

15. spacer 1.19|100419|19|NZ_CP040532|CRT matches to position: 2415162-2415180, mismatch: 2, identity: 0.895

caccgcgtcgggtgaatcg	CRISPR spacer
caccgcgtcggggcaatcg	Protospacer
************  *****

16. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 87075-87093, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
cacctcgtcgggcacgccg	Protospacer
**** ***********.**

17. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 1407638-1407656, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgtcgtgcacgacg	Protospacer
********** ***** **

18. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 1606122-1606140, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgtcgtgcgcgtcg	Protospacer
********** **.*****

19. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 1633572-1633590, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
cacctcgtcgggcacgccg	Protospacer
**** ***********.**

20. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 1793931-1793949, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgtcgcgcacctcg	Protospacer
********** **** ***

21. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 1799560-1799578, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
cagcgcgtcgagcacgtcg	Protospacer
** *******.********

22. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 2288865-2288883, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
cagcgcgtcggccacgtcg	Protospacer
** ******** *******

23. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 16122-16140, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgtcgcgcacgccg	Protospacer
********** *****.**

24. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 363694-363712, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
cacggcgtcgggcaggtcg	Protospacer
*** ********** ****

25. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 2852583-2852601, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcctcgcgcacgtcg	Protospacer
****** *** ********

26. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 2928926-2928944, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgtcggacacggcg	Protospacer
***********.**** **

27. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 3132138-3132156, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgtcggctacgtcg	Protospacer
*********** .******

28. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 3205954-3205972, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgccgagcacgtcg	Protospacer
*******.**.********

29. spacer 1.31|100923|19|NZ_CP040532|CRT matches to position: 3343532-3343550, mismatch: 2, identity: 0.895

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgccgagcacgtcg	Protospacer
*******.**.********

30. spacer 1.33|101007|19|NZ_CP040532|CRT matches to position: 1225284-1225302, mismatch: 2, identity: 0.895

cgccgcgtcgggtgaatcg	CRISPR spacer
cgccgcgacgggcgaatcg	Protospacer
******* ****.******

31. spacer 1.33|101007|19|NZ_CP040532|CRT matches to position: 2087248-2087266, mismatch: 2, identity: 0.895

cgccgcgtcgggtgaatcg	CRISPR spacer
cgcctcgtcgggcgaatcg	Protospacer
**** *******.******

32. spacer 1.34|101049|19|NZ_CP040532|CRT matches to position: 522080-522098, mismatch: 2, identity: 0.895

gcaagcggcgggcagcaac	CRISPR spacer
gcacccggcgggcagcaac	Protospacer
***  **************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040532_1	1.31\|100923\|19\|NZ_CP040532\|CRT	100923-100941	19	NC_042132	Gordonia phage Sour, complete genome	12234-12252	0	1.0

1. spacer 1.31|100923|19|NZ_CP040532|CRT matches to NC_042132 (Gordonia phage Sour, complete genome) position: , mismatch: 0, identity: 1.0

caccgcgtcgggcacgtcg	CRISPR spacer
caccgcgtcgggcacgtcg	Protospacer
*******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

511901 : 522081

Burkholderia_virus(77.78%)

integrase,transposase

attL 506831:506847|attR 533249:533265

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
506831:506847	attL	NA	NA	NA	NA
WP_151275072.1\|511901_513884_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.8e-83	44.8
WP_004547951.1\|513981_514362_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_004535221.1\|514355_516371_+	cation acetate symporter	NA	NA	NA	NA
WP_044490803.1\|516666_517866_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	6.9e-224	99.2
WP_004537646.1\|517862_518012_-	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_004545536.1\|518259_518913_+	hypothetical protein	Q8W6Q5	Burkholderia_virus	6.7e-112	99.5
WP_004545584.1\|519519_519762_-	hypothetical protein	NA	NA	NA	NA
WP_009961454.1\|519790_519898_-	hypothetical protein	Q6JIH6	Burkholderia_virus	2.9e-09	82.9
WP_009923452.1\|519899_520031_-	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_004552388.1\|520040_520316_-	bacteriophage protein Gp49	Q6JIH4	Burkholderia_virus	2.3e-42	96.7
WP_009923450.1\|520886_521156_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|521139_521424_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
WP_004553174.1\|521733_521931_-	hypothetical protein	NA	NA	NA	NA
WP_004536695.1\|521841_522081_+	HNH endonuclease	Q8W6N0	Burkholderia_virus	8.2e-36	90.9
533249:533265	attR	NA	NA	NA	NA

DBSCAN-SWA_2

674115 : 745752

Vibrio_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525541.1\|674115_674883_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_151275102.1\|674921_675923_-	HpnL family protein	NA	NA	NA	NA
WP_004525542.1\|675919_676693_-	hypothetical protein	NA	NA	NA	NA
WP_038746176.1\|676689_677385_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_151275103.1\|677749_679264_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_151275622.1\|679233_679566_-	hypothetical protein	NA	NA	NA	NA
WP_004530037.1\|680973_681912_+	hypothetical protein	NA	NA	NA	NA
WP_004202234.1\|681945_682494_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004530038.1\|682490_684002_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|684145_684673_+	hypothetical protein	NA	NA	NA	NA
WP_004190879.1\|684752_685184_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|685197_687060_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|687056_688046_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_076859995.1\|688048_690919_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_151270255.1\|690909_693201_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_151275104.1\|693366_695655_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_122885408.1\|695658_697875_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004547094.1\|697874_698945_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004525551.1\|698947_699664_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|699706_700096_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004202226.1\|700101_700695_+	hypothetical protein	NA	NA	NA	NA
WP_004525552.1\|700691_702053_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004530043.1\|702078_703794_+	OmpA family protein	NA	NA	NA	NA
WP_004525554.1\|703790_707294_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|707352_707712_+	hypothetical protein	NA	NA	NA	NA
WP_004530792.1\|707734_708157_+	hypothetical protein	NA	NA	NA	NA
WP_004530793.1\|708381_708753_+	hypothetical protein	NA	NA	NA	NA
WP_009923697.1\|708850_709024_-	hypothetical protein	NA	NA	NA	NA
WP_076842009.1\|710301_710430_+	hypothetical protein	NA	NA	NA	NA
WP_151275105.1\|713245_713623_-	hypothetical protein	NA	NA	NA	NA
WP_080316380.1\|714750_714933_+	hypothetical protein	NA	NA	NA	NA
WP_151275106.1\|714929_716513_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_101560587.1\|718479_718857_+	hypothetical protein	NA	NA	NA	NA
WP_151275107.1\|718851_720516_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	3.1e-57	31.8
WP_151275108.1\|720647_722213_-	glycoside hydrolase family 68 protein	NA	NA	NA	NA
WP_004530800.1\|722401_723418_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|723906_725106_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004198247.1\|725283_726309_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009923708.1\|726467_726731_+	hypothetical protein	NA	NA	NA	NA
WP_004186965.1\|726742_728017_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.9e-105	54.1
WP_004186989.1\|728089_729061_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|729211_729745_+	4-vinyl reductase	NA	NA	NA	NA
WP_004523137.1\|729805_731869_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_151275109.1\|731871_733797_+	DUF3483 domain-containing protein	NA	NA	NA	NA
WP_004202150.1\|733801_734974_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004530055.1\|734970_735756_+	drug:proton antiporter	NA	NA	NA	NA
WP_004523139.1\|735780_737049_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004530056.1\|737069_738215_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004186918.1\|738324_739188_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004530057.1\|739368_741024_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|741110_741986_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004523143.1\|742129_743029_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004186939.1\|743164_744718_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_004535106.1\|744753_745752_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_3

2760142 : 2825391

Streptococcus_phage(22.22%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076907860.1\|2760142_2760871_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	9.3e-22	31.2
WP_004544687.1\|2760917_2761052_+	hypothetical protein	NA	NA	NA	NA
WP_004539274.1\|2761090_2762524_+	amidohydrolase family protein	NA	NA	NA	NA
WP_004552566.1\|2762549_2763203_+	glutathione S-transferase	NA	NA	NA	NA
WP_004539275.1\|2763383_2764112_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.2e-21	31.2
WP_076823033.1\|2764165_2764468_-	hypothetical protein	NA	NA	NA	NA
WP_151275667.1\|2764537_2766292_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_151275526.1\|2766368_2766614_-	hypothetical protein	NA	NA	NA	NA
WP_009978512.1\|2766638_2766974_-	hypothetical protein	NA	NA	NA	NA
WP_151275527.1\|2766974_2776265_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_071811406.1\|2776416_2776614_-	hypothetical protein	NA	NA	NA	NA
WP_038716022.1\|2776614_2776878_-	hypothetical protein	NA	NA	NA	NA
WP_076880949.1\|2777093_2777297_+	hypothetical protein	NA	NA	NA	NA
WP_004544773.1\|2777233_2777395_-	hypothetical protein	NA	NA	NA	NA
WP_151275528.1\|2777501_2782097_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	1.1e-27	38.3
WP_028358328.1\|2782083_2783352_-	hypothetical protein	NA	NA	NA	NA
WP_151275529.1\|2783367_2785572_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.4e-42	27.7
WP_004529305.1\|2785539_2785755_+	hypothetical protein	NA	NA	NA	NA
WP_009935223.1\|2785988_2786435_-	hypothetical protein	NA	NA	NA	NA
WP_004530176.1\|2786441_2786735_+	hypothetical protein	NA	NA	NA	NA
WP_004529308.1\|2787546_2787894_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.6e-41	73.8
WP_004555373.1\|2787890_2788298_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	4.9e-12	36.5
WP_151275530.1\|2788730_2790698_-	hypothetical protein	NA	NA	NA	NA
WP_151275531.1\|2791004_2793176_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|2793180_2794032_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004544732.1\|2794032_2794986_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_151275532.1\|2795018_2796260_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_038758502.1\|2796295_2797540_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_080293662.1\|2797582_2799643_-	hypothetical protein	NA	NA	NA	NA
WP_076867276.1\|2799784_2799997_+	hypothetical protein	NA	NA	NA	NA
WP_076849987.1\|2799993_2801052_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_151275533.1\|2802446_2803232_+	hypothetical protein	NA	NA	NA	NA
WP_004557924.1\|2806574_2807141_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_004546292.1\|2812085_2813237_+	hypothetical protein	NA	NA	NA	NA
WP_151270523.1\|2813247_2813577_-	hypothetical protein	NA	NA	NA	NA
WP_122650910.1\|2814541_2815060_-\|transposase	transposase	S5WIU1	Leptospira_phage	1.9e-21	54.3
WP_151275534.1\|2814674_2816525_-	RHS repeat protein	NA	NA	NA	NA
WP_041198943.1\|2816484_2817195_-	hypothetical protein	NA	NA	NA	NA
WP_004203275.1\|2817210_2819415_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_151275535.1\|2822089_2823556_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_050868649.1\|2823519_2825391_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040531

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1152765 : 1165777

uncultured_Mediterranean_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151274388.1\|1152765_1153761_-	endonuclease	A6XMH8	Bacillus_virus	2.0e-51	39.1
WP_011854124.1\|1153837_1154806_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.8e-55	41.1
WP_151274389.1\|1154901_1155366_-	hypothetical protein	NA	NA	NA	NA
WP_004535393.1\|1155761_1156013_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	3.1e-17	59.6
WP_076832493.1\|1156064_1157114_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	2.1e-107	55.2
WP_143285900.1\|1157185_1157599_+	DNA mismatch endonuclease Vsr	V5UTF4	Oenococcus_phage	1.1e-11	38.2
WP_151274390.1\|1157625_1160763_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	2.8e-99	29.3
WP_080500620.1\|1160759_1161398_+	hypothetical protein	NA	NA	NA	NA
WP_076832484.1\|1161391_1165777_+	ATP phosphoribosyltransferase regulatory subunit	A0A1B1IUC6	uncultured_Mediterranean_phage	4.7e-52	25.3

DBSCAN-SWA_2

1178942 : 1195254

Burkholderia_phage(71.43%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038709523.1\|1178942_1180061_-	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	6.4e-123	57.3
WP_038743760.1\|1180066_1180840_-	nuclease	A4JWV4	Burkholderia_virus	4.6e-43	43.3
WP_004535952.1\|1180842_1181373_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.4e-51	60.0
WP_122633742.1\|1182411_1182738_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	1.6e-50	96.2
WP_151274394.1\|1182730_1183144_+\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	8.9e-70	98.5
WP_151274395.1\|1183161_1183647_+	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	3.0e-69	86.4
WP_111952238.1\|1184040_1184631_+	hypothetical protein	NA	NA	NA	NA
WP_004527840.1\|1184734_1185100_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.5e-52	88.4
WP_004521948.1\|1185201_1185987_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004521949.1\|1185983_1187330_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521950.1\|1187438_1188053_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_045597230.1\|1188428_1189094_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521952.1\|1189130_1189649_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004521953.1\|1189665_1191156_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004527837.1\|1191228_1191732_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011205263.1\|1191759_1192272_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_011205262.1\|1192363_1194190_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004200010.1\|1194153_1195254_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_3

1523739 : 1532996

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004194034.1\|1523739_1525692_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2
WP_004533593.1\|1525958_1527089_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.8e-22	27.6
WP_151274451.1\|1527122_1529141_+	chloride transporter	S4VT78	Pandoravirus	7.4e-53	34.7
WP_004194137.1\|1529324_1530140_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004532195.1\|1530204_1530888_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194373.1\|1530884_1531412_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004522151.1\|1531448_1532996_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2

DBSCAN-SWA_4

1869922 : 1878748

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151274511.1\|1869922_1871323_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.7
WP_004522359.1\|1871291_1872278_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	6.7e-15	26.8
WP_122884164.1\|1872336_1873329_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_151274512.1\|1873400_1873718_+	competence protein ComE	NA	NA	NA	NA
WP_004550116.1\|1874052_1874955_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	3.3e-53	39.9
WP_076895654.1\|1875181_1876516_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004188957.1\|1876643_1877567_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_151271005.1\|1877642_1877828_+	hypothetical protein	NA	NA	NA	NA
WP_004190087.1\|1877905_1878748_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	7.2e-18	27.2

DBSCAN-SWA_5

2386673 : 2391154

Burkholderia_virus(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196630.1\|2386673_2386937_+	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5
WP_071897863.1\|2386920_2387106_+	hypothetical protein	Q8W6S4	Burkholderia_virus	4.4e-21	85.2
WP_076804729.1\|2387126_2387438_-	hypothetical protein	A4PE26	Ralstonia_virus	4.5e-26	60.2
WP_038763587.1\|2387858_2388461_-	hypothetical protein	NA	NA	NA	NA
WP_151274616.1\|2388802_2389309_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	3.0e-19	40.1
WP_151274617.1\|2389305_2389728_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.3e-15	42.6
WP_004557051.1\|2390008_2390404_-	hypothetical protein	NA	NA	NA	NA
WP_004531416.1\|2390657_2390885_+	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_004527234.1\|2390920_2391154_-	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6

DBSCAN-SWA_6

3258250 : 3265040

Burkholderia_virus(33.33%)

integrase

attL 3250126:3250141|attR 3261833:3261848

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3250126:3250141	attL	NA	NA	NA	NA
WP_004552920.1\|3258250_3258673_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.7e-15	49.4
WP_122959324.1\|3258669_3259176_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.1e-18	38.7
WP_004531127.1\|3259168_3259642_+	hypothetical protein	NA	NA	NA	NA
WP_076804924.1\|3259613_3260120_+	hypothetical protein	NA	NA	NA	NA
WP_004534505.1\|3260128_3260842_+	hypothetical protein	A4PE26	Ralstonia_virus	1.5e-32	43.8
WP_080366950.1\|3260862_3261069_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.1e-15	86.7
WP_151274768.1\|3261019_3261502_+\|integrase	integrase	B9UDL9	Salmonella_phage	1.9e-18	42.6
WP_004521810.1\|3261755_3262586_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
3261833:3261848	attR	NA	NA	NA	NA
WP_029671251.1\|3262830_3262938_-	hypothetical protein	NA	NA	NA	NA
WP_009919873.1\|3263133_3264042_+	aldose 1-epimerase	NA	NA	NA	NA
WP_004192768.1\|3264338_3265040_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	9.9e-13	44.8

DBSCAN-SWA_7

3851906 : 3862849

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196461.1\|3851906_3854207_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1
WP_004194131.1\|3854203_3854518_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196460.1\|3855050_3855254_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_045597308.1\|3855383_3856988_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_004189626.1\|3857000_3857183_+	hypothetical protein	NA	NA	NA	NA
WP_004189552.1\|3857155_3858415_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189780.1\|3858682_3859261_+	pseudouridine synthase	NA	NA	NA	NA
WP_071810810.1\|3859523_3859742_+	hypothetical protein	NA	NA	NA	NA
WP_004185496.1\|3859933_3860443_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_004197486.1\|3860734_3862849_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040532

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040531

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection