CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP040546	Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-VIR, complete sequence	0 crisprs	RT	1
NZ_CP040545	Klebsiella pneumoniae strain CR-HvKP5 chromosome, complete genome	2 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	11
NZ_CP040547	Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-KPC, complete sequence	0 crisprs	RT	4
NZ_CP040549	Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-p4, complete sequence	0 crisprs	RT	0
NZ_CP040550	Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-p5, complete sequence	0 crisprs	NA	0
NZ_CP040548	Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-p3, complete sequence	0 crisprs	RT	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4984 : 57658

Enterobacteria_phage(15.79%)

transposase,integrase

attL 2527:2544|attR 43213:43230

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2527:2544	attL	NA	NA	NA	NA
WP_004213833.1\|4984_6121_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004213829.1\|6186_6504_-	hypothetical protein	NA	NA	NA	NA
WP_004197568.1\|6655_6979_-	hypothetical protein	NA	NA	NA	NA
WP_011251302.1\|7730_8690_-	DNA replication protein	NA	NA	NA	NA
WP_004186937.1\|8732_9140_-	hypothetical protein	NA	NA	NA	NA
WP_004213821.1\|9149_9593_-	hypothetical protein	NA	NA	NA	NA
WP_004213807.1\|10856_11825_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
WP_004902302.1\|12152_13745_-\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
WP_004189161.1\|13775_14126_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_004215130.1\|14122_14563_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
WP_004902307.1\|14759_14942_+	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	9.1e-11	57.1
WP_004117790.1\|16148_17120_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-150	86.9
WP_004211841.1\|17119_18286_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	2.0e-223	97.4
WP_071591903.1\|18241_18490_+	hypothetical protein	NA	NA	NA	NA
WP_073558148.1\|18704_18986_-	hypothetical protein	NA	NA	NA	NA
WP_004211839.1\|19015_20026_+	replication initiation protein	J9Q7H0	Salmonella_phage	1.1e-86	53.5
WP_004211835.1\|22345_22882_-	hypothetical protein	NA	NA	NA	NA
WP_004214667.1\|25632_26415_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.0e-135	96.1
WP_004902343.1\|28761_29199_-	hypothetical protein	NA	NA	NA	NA
WP_004902347.1\|29198_30230_-	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	2.9e-08	26.1
WP_011251296.1\|30229_31096_-	ParA family protein	NA	NA	NA	NA
WP_011251294.1\|31619_31865_-	molecular chaperone DnaJ	NA	NA	NA	NA
WP_077250517.1\|33780_33939_-	hypothetical protein	A0A0U2RK18	Escherichia_phage	2.2e-05	69.7
WP_004213558.1\|34251_35181_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.6e-72	52.4
WP_004213560.1\|35325_36105_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.0e-51	89.4
WP_077250520.1\|36101_36914_-	hypothetical protein	NA	NA	NA	NA
WP_004213565.1\|37846_38821_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_023302803.1\|39457_40366_+	HNH endonuclease	NA	NA	NA	NA
WP_004213569.1\|40752_41103_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.2e-20	53.3
WP_023302802.1\|41246_41678_-	silver-binding protein SilE	NA	NA	NA	NA
WP_004213850.1\|42229_43153_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
WP_048333569.1\|43361_43805_-	hypothetical protein	NA	NA	NA	NA
43213:43230	attR	NA	NA	NA	NA
WP_048333570.1\|45348_45819_+	hypothetical protein	NA	NA	NA	NA
WP_004213850.1\|45885_46809_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
WP_004213594.1\|47042_47537_-	hypothetical protein	NA	NA	NA	NA
WP_000427619.1\|47822_48827_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000405672.1\|48917_49352_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_004213585.1\|49437_51843_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1
WP_000118563.1\|51839_52916_+	signal peptidase II	NA	NA	NA	NA
WP_004213590.1\|53045_53603_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.6e-48	81.3
WP_004213592.1\|53605_56575_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.3
WP_000427619.1\|56653_57658_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040545

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040545_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040545_1

1770737-1770889

Orphan

Consensus_repeat	Method
CCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040545_1

>merge|NZ_CP040545|1|1770737-1770889|CRISPRCasFinder
CCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGTCTGGATTATACGGTGGGTGTCATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCA

>NZ_CP040545|1|1|1770737-1770889|CRISPRCasFinder
CCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCA	GTGTGGCGGCTACGCCTGACCCGGTCTGGATTATACGGTGGGTGTCATA
CCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040545.1\|WP_004146563.1\|1761731_1761872_-\|small-membrane-protein	unknown	unknown	unknown
NZ_CP040545.1\|WP_023313415.1\|1766461_1767310_+\|DNA-3-methyladenine-glycosylase-2	unknown	unknown	gnl\|CDD\|236671
NZ_CP040545.1\|WP_002912442.1\|1767424_1768066_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NZ_CP040545.1\|WP_021440448.1\|1774587_1775217_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|214471
NZ_CP040545.1\|WP_040211897.1\|1761004_1761616_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|197715
NZ_CP040545.1\|WP_040089335.1\|1762825_1764682_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040545.1\|WP_000704907.1\|1796440_1797607_+\|UDP-glucose-6-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NZ_CP040545.1\|WP_023284036.1\|1764971_1766324_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|236954
NZ_CP040545.1\|WP_001741945.1\|1773304_1774195_+\|GalU-regulator-GalF	unknown	unknown	gnl\|CDD\|182252
NZ_CP040545.1\|WP_004149053.1\|1759455_1760730_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|224220
NZ_CP040545.1\|WP_062955080.1\|1768768_1770616_+\|outer-membrane-assembly-protein-AsmA	unknown	unknown	gnl\|CDD\|236772
NZ_CP040545.1\|WP_016947628.1\|1798035_1798155_-\|small-membrane-protein	unknown	unknown	unknown
NZ_CP040545.1\|WP_075053193.1\|1799515_1799797_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040545.1\|WP_063002077.1\|1793900_1794770_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP040545.1\|WP_062955151.1\|1798555_1799560_-\|NAD-dependent-epimerase	unknown	unknown	gnl\|CDD\|187563
NZ_CP040545.1\|WP_004151141.1\|1762109_1762811_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040545.1\|WP_062955079.1\|1770955_1772539_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP040545.1\|WP_004151145.1\|1768156_1768738_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|274062
NZ_CP040545.1\|WP_004175260.1\|1795706_1796261_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP040545.1\|WP_048996045.1\|1794801_1795692_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|182184

Protein	Function_ID	Function_description	E-value
NZ_CP040545.1\|WP_001741945.1\|1773304_1774195_+\|GalU-regulator-GalF	gnl\|CDD\|182252	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF.	0
NZ_CP040545.1\|WP_023313415.1\|1766461_1767310_+\|DNA-3-methyladenine-glycosylase-2	gnl\|CDD\|236671	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional.	2.88034e-180
NZ_CP040545.1\|WP_002912442.1\|1767424_1768066_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.7406e-147
NZ_CP040545.1\|WP_021440448.1\|1774587_1775217_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|214471	smart00014, acidPPc, Acid phosphatase homologues.	5.51687e-16
NZ_CP040545.1\|WP_040211897.1\|1761004_1761616_-\|response-regulator-transcription-factor	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	0.00180993
NZ_CP040545.1\|WP_040089335.1\|1762825_1764682_-\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.24274e-41
NZ_CP040545.1\|WP_000704907.1\|1796440_1797607_+\|UDP-glucose-6-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	0
NZ_CP040545.1\|WP_023284036.1\|1764971_1766324_-\|molecular-chaperone	gnl\|CDD\|236954	PRK11678, PRK11678, putative chaperone; Provisional.	0
NZ_CP040545.1\|WP_004149053.1\|1759455_1760730_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|224220	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion].	2.89178e-108
NZ_CP040545.1\|WP_062955080.1\|1768768_1770616_+\|outer-membrane-assembly-protein-AsmA	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	0
NZ_CP040545.1\|WP_063002077.1\|1793900_1794770_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP040545.1\|WP_062955151.1\|1798555_1799560_-\|NAD-dependent-epimerase	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP040545.1\|WP_004151141.1\|1762109_1762811_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.98041e-36
NZ_CP040545.1\|WP_062955079.1\|1770955_1772539_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.3049e-98
NZ_CP040545.1\|WP_004151145.1\|1768156_1768738_+\|dCTP-deaminase	gnl\|CDD\|274062	TIGR02274, Probable_deoxycytidine_triphosphate_deaminase, deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.60713e-93
NZ_CP040545.1\|WP_004175260.1\|1795706_1796261_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	1.63444e-111
NZ_CP040545.1\|WP_048996045.1\|1794801_1795692_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|182184	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional.	1.65793e-153

>NZ_CP040545.1|WP_062955080.1|1768768_1770616_+|outer-membrane-assembly-protein-AsmA
MRRILTTLMILLAVIVAGLTSLVLLVNPNDFRAYMVHEVAERSGYQLDLDGPLRWHVWPQLSILSGRMTLTARGAEEPVIRADNMRLDVALLPLLSHQLQVKQVMLKGAVIQLTPKTEAVRDSSAPVVPHDNTLPLAQEDRGWSYDVRQLQVADSVLFFQHESGEQVTVRDIRLQMEQDENHRATVDFSGRVNRDQRDLALSFSATVQGGDYPHSLKADFTQLSWQLRGAELPPDGINGQGSLQASWQEDDKTLRFDNLNLMANRSTVTGSGSVVLGERPDWSLDLHATTLDLDSLLAQRSPATDSSASQQGQSQTRPLRPVIADSDEREDYQSLRGFNGRMALSADQLQWRGLNFTQVQSEISNQQGLLTVSKMQGNLDGGQLSLPGTLDARGDTPLATFQPALQNVEIGSLIKAFNYSLNLTGKLSLSGEFSGTRIDADDFRRHWQGQAQLQMADTRTEGLNFQQLVQQAVERSTNVRAQENYDNATRLDSVSSRLTLDNGLVTLNRLQGQSDVMAMTGEGQLDLQKENCDMRFNVRVLGGWKGEGKLIDRLKQTAIPLRIYGEWQSLSYSLQVDQILRKQLQDEAKQRLNDWVERNKGSKDGNDAKKLLDKL
>NZ_CP040545.1|WP_004151145.1|1768156_1768738_+|dCTP-deaminase
MRLCDRDIEAWLDEGRLAINPRPPVERINGATVDVRLGNKFRTFRGHTAPFIDLSGPKAEVSAALDRVMSEEIVLPEGEAFFLHPGELALAVTYESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMPIGALSFEPLSGPAARPYNRREDAKYRDQQGAVASRIDKD
>NZ_CP040545.1|WP_002912442.1|1767424_1768066_+|uridine-kinase
MTDMSHQCVIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPNTIHVEPKKVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE
>NZ_CP040545.1|WP_023313415.1|1766461_1767310_+|DNA-3-methyladenine-glycosylase-2
MVLLPWTPPYDWAWMVGFLQARAVAGVERFHDGGYSRSFGVEGHRGLIHLAPDEEAQGLRVSLSPGLQPVAEICYARIGQLFDLACDPRQVARTLGDLAQARPGLRLPGALDAFEQAVRAVLGQLVSVAMAARLTAKVAAGWGEPLAEAPGYVLFPTPEALSRADPQALKALGMPLRRAEALIHLARAALSGELPLTAPADIDAGLRQLQTLPGIGRWTANYFALRGWQAKDIFLPDDYLIKQRFPGMTPAAIARYARRWQPMRSYALLHIWYTDDWAPAAE
>NZ_CP040545.1|WP_023284036.1|1764971_1766324_-|molecular-chaperone
MFIGFDYGTANCSVAVMRENTPQLLTLENGSALLPSMLCAPTREAVSEWLYRHHDVPTHSDENQALLRRAIAANRDEDIEVLRNSVQFGLASLQQYVEDPQEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKLQAESQLPEQIDQAVIGRPINFQGLGGDEANAQAQGILERAAHRAGFRDVVFQFEPVAAGLDFEATLSEEKRVLVVDIGGGTTDCSLLLMGPQWRERADRQQSLLGHSGCRIGGNDLDIALAFKCLMPLLGMGGETEKGTALPILPWWNAVAINDVPAQSDFYSTANGRLLNDLLRSARDADKVALLLKVWRQRLSYRLVRSAEESKIALSSAASVETALPFIQDDLATAIAQQGLEAALDQPLTRIMEQVRLALDSSQTTPDVIYLTGGSARSPLIKKALAAQLPGIPLAGGDDFGSVTAGLARWAQVVFR
>NZ_CP040545.1|WP_040089335.1|1762825_1764682_-|sensor-histidine-kinase
MLLVAPQAQAATRQVGIDIPVQWYADDSGQMTLDRFAALPADQLATTRQIPSFGYSRKTWWLRSELPGTWFAGEPRWMQLGPSFVDHLTIYYRPLGSDAPWAQRTFGDRDVARESDLHYRESVLILPPPPTAAGYEVVFRLQSTSTLILLASLSSPQEFVQRATADTAFWSFYFGLAAVASGVALWLALALRRRLLWGICLFSLNYPLVAALHGFPEWFFGHAALPFQDFMISSLSLFSYATALWLHSEIFDLKKNMPRLHQLLIAAVILNLVLQVSIPLGFYGFAMQIEGVVFIIITPVLLFTSWWLWRKKAIDRTTLLLGLLPPFYVVAAVLVQLSIHGIIPFHMAIYSLWQYALIVHIITVLIIAILRVRAENRQLEQKQRLARELQIEREASFHQRQFMGMVAHEFRTPLAVIQAALENLRLSAASTSQEARFDRIGRAATRLVQLTDNCLADARLASHDLHVERQQTALLTVINMAASVVAISHDHYLNIRQHGAVESPQLQADAGLLCIAIANLLDNAVKYSPPGEIAIDIHSDAGQTELRIRDHGPGLPAGQAELIFERYRRGEHTSPVPGGTGLGLYVARQIVQAHDGKLWLAEHGPDGCTFILTLPTVA
>NZ_CP040545.1|WP_004151141.1|1762109_1762811_-|response-regulator-transcription-factor
MALRLAIIEDNADLLDELLAWLGYRGFEVWGTRSAEAFWRQLHSHPVDIVLVDIGLPGEDGFSVLNYLHELGHYGLVVVSARGQQQDKLQALSLGADAYLIKPVNFAHLAETLTALGARLRQDRPAAPPAEAIGTPPAVSPGSWRLQEDKLISPDARTLELTQQEYRLVELLMRNRNEVCSKLDLHACLFSHESEPDLHRIDVVVSRLRHKARQQGIHLPVRAIFGKGLAFIS
>NZ_CP040545.1|WP_004146563.1|1761731_1761872_-|small-membrane-protein
MAMQTWLVLLLCIFFFSISVYSFISYLKDRRRQKFTFNDKRSMRRK
>NZ_CP040545.1|WP_040211897.1|1761004_1761616_-|response-regulator-transcription-factor
MRNINVTINTRNAFVRESLVAMVNDLTRGDLRARFSWRNTDLSDEDIIICEVIPGEIYLCNTLIKNRKRGSSLIILHSYDQLPEDEFMINCLKGVIFVSLKTASIPQLLTIIKSELQHCMTPTATDAAGRELSCASCPHRVLSRSQTAVVHGILEGLDMSKIAALQRVSPRTAAYHKNKIMEKYSLNNNHEFFQFMNLLRERW
>NZ_CP040545.1|WP_004149053.1|1759455_1760730_+|dicarboxylate/amino-acid:cation-symporter
MANANKLTLFIVIFMLMGILSGAAIHAYATPTTVSAWADNITLLTDLFLRLIKMVIAPLVFSTLTVGIMRLGETATIGRVGGKAMVWFITSSVLSILVGLVIVTFQHPGAGLNLAVPKEAVDTGLAVSGMSLKGFLSHTIPTSITEAMANNEILQIVVFSMFFGIAGASLGEKFNAPLVAALNVVSHIMLKVTGYVMYVAPLAIFAAISSVIASQGLGILLNYASFIGGYYLAVLLTSAVLIAVGYMVLKKEVFRLLNMLKDPVLVAFTTSSSEAAYPKTLERLVKFGCSRNIVSFVLPIGYSFNLVGSMVYCSFAAMFIAQAYNVPLSFSEITVMMLTLMLASKGIAGVPRSALVVLAATIPSFNIPVAGILLLMGIDHFLDMGRSAINVLGNGIATAMLSKNEGLLTDEEAQPDWEVEKAEA
>NZ_CP040545.1|WP_062955079.1|1770955_1772539_-|TerC-family-protein
MEWIADPSIWAGLVTLVVIELVLGIDNLVFIAILAEKLPPAQRDRARITGLMLAMVMRLLLLASISWLVTLTKPLIVFHDFSFSARDLIMLFGGLFLLFKATVELNERLEGKDSDNPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMVAVVIAISLMLMASKALTRFVNSHPTIVILCLSFLLMIGFSLIAEGFSFIIPKGYLYAAIGFSVMIEALNQLAQFNRRRFLSANMTLRQRTTEAVMNLLSGQKEKAELDADTASLVADQDQHPLFNPQERLMIERVLNLNQRSVSSIMTSRHDIERINLSAPEEEIRSLVEKNQHTRLVVTGGKDNEDLLGVVHVIDLLQQSLRQEPLDLQALVRQPLVFPEGLPLLSALEQFRQARTHFAFVVDEFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQHHQDGSWTVNGHMPLEDLVQYVPLPLDDKREYHTVAGLLMEYLQHVPQVGETIEIDGYTLRTLQVDSHRVQKVQIVPPVKQDELDYEV
>NZ_CP040545.1|WP_001741945.1|1773304_1774195_+|GalU-regulator-GalF
MANLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHSSKNAVENHFDTSYELEALLEQRVKRQLLAEVQAICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIILDGGTADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPMVAEGQVARIVEFIEKPDEPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGESYDCGKKMGYMQAFVTYGMRNLKEGAKFRESIKKLLA
>NZ_CP040545.1|WP_021440448.1|1774587_1775217_+|phosphatase-PAP2-family-protein
MNWQLISFFGDSTVLLPSAAALFIVLMLRKTSRLLAWQWSLLFGITGAIVCASKLAFMGWGLGIRELDFTGFSGHSALSAAFWPIFLWLLSARFSVGLRKAAVITGYVLAAVVGYSRLVIHAHSVSEVIAGLLLGAAGSALFLVLQKRTPDPENVNISWGGVACLVMVPLILLHSGSKAPTQSLLGQIATAVGPLDKPFTRTDLHKQAW
>NZ_CP040545.1|WP_063002077.1|1793900_1794770_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIVLAGGSGTRLYPITQGVSKQLLPIYDKPMIFYPVSVLMLAGIRDILIISTPDDMPSFQRLLGDGSQFGVNFSYAIQPSPDGLAQAFIIGEKFIGNDACALVLGDNIYFGQSFGKKLEAAAAKTSGATVFGYQVLDPERFGVVEFDDNFKALSIEEKPLKPKSDWAVTGLYFYDNNVVEMAKDVKPSERGELEITTLNQMYLERGDLQVELLGRGFAWLDTGTHDSLIEASQFIHTIEKRQGMKVACLEEIAYRNQWLSAEGVAAQAERLKKTEYGAYLKRLLSED
>NZ_CP040545.1|WP_048996045.1|1794801_1795692_+|dTDP-4-dehydrorhamnose-reductase
MKILLIGKNGQVGWELQRSLSTLGDVVAVDYFDKELCGDLTNLDGIAQTVRTVRPDVVVNAAAHTAVDKAESERELSDLLNDKGVAVLAAESAKLGALMVHYSTDYVFDGAGSHYRREDEATGPLNVYGETKRAGELALEHGNPRHLIFRTSWVYATRGANFAKTMLRLAGEKETLSIIDDQHGAPTGAELLADCTATAIRETLRDPALAGTYHLVASGETSWCDYARYVFEVARAHGAELAVQEVKGIPTTAYPTPAKRPLNSRLSNEKFQQAFGVTLPDWRQGVARVVTEVLGK
>NZ_CP040545.1|WP_004175260.1|1795706_1796261_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MNIIKTDIPEVLIFEPRVFGDARGFFFESFSSKVFNEAVGRQVEFVQDNHSQSQKGVLRGLHYQLDPHAQGKLVRCVEGEVFDVAVDIRRSSPTFGKWVGAVLSAENKRQLWIPEGFAHGFMALSDTVQFVYKATNYYAPQSERSIIWNDPEIGIDWPALSDCALSLSEKDLQAHTLATAEVYK
>NZ_CP040545.1|WP_000704907.1|1796440_1797607_+|UDP-glucose-6-dehydrogenase
MKITISGTGYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDIKERLGIDNVIFSPEFLREGRALYDNLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYESVPNNIIAAIVDANRTRKDFIADSILARKPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLDAFKQEADVIISNRMAEELADVADKVYTRDLFGND
>NZ_CP040545.1|WP_016947628.1|1798035_1798155_-|small-membrane-protein
MENLFFLVVAAILLAVSVYFLISYLKDRKKTKLTFNKRK
>NZ_CP040545.1|WP_062955151.1|1798555_1799560_-|NAD-dependent-epimerase
MKFLVTGAAGFIGYHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQQLDLADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADANLMGYLNILEGCRHTKVKHLVYASSSSVYGLNRKMPFSTQDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANADWTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGMEAQKNMMPIQPGDVLDTSADTQPLYDLVGFKPQTSVKDGVKNFVDWYKDYYQI
>NZ_CP040545.1|WP_075053193.1|1799515_1799797_+|hypothetical-protein
MVADKTCGTSDQKLHIFPPGCGYPVLHKCRFYTGLRLGSLGLQLQDVSCSNAVVLNCRLMQMIFIYVVIIEYVYSLSIMSVVGQLVPGILLSR

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Crispr_ID: NZ_CP040545_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040545_2

4561869-4561963

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040545_2

>merge|NZ_CP040545|2|4561869-4561963|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP040545|2|2|4561869-4561963|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040545.1\|WP_002888347.1\|4559696_4560236_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP040545.1\|WP_002888327.1\|4569216_4570206_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP040545.1\|WP_002888323.1\|4571026_4571404_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP040545.1\|WP_002888349.1\|4553498_4555856_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP040545.1\|WP_002888368.1\|4549267_4550977_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP040545.1\|WP_004151368.1\|4556043_4558950_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP040545.1\|WP_002888353.1\|4552627_4553323_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP040545.1\|WP_002888321.1\|4571408_4572257_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP040545.1\|WP_002888373.1\|4547188_4547956_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP040545.1\|WP_002888332.1\|4564450_4565278_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP040545.1\|WP_002888320.1\|4572512_4572992_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP040545.1\|WP_002888324.1\|4570202_4571024_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP040545.1\|WP_002888357.1\|4550987_4552490_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP040545.1\|WP_004147026.1\|4565521_4567870_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP040545.1\|WP_002888348.1\|4558962_4559622_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP040545.1\|WP_002888340.1\|4562104_4563730_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP040545.1\|WP_002888345.1\|4560415_4561780_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP040545.1\|WP_002888337.1\|4563719_4564418_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP040545.1\|WP_002888329.1\|4567924_4569211_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP040545.1\|WP_002888370.1\|4548084_4548930_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717

Protein	Function_ID	Function_description	E-value
NZ_CP040545.1\|WP_002888347.1\|4559696_4560236_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP040545.1\|WP_002888327.1\|4569216_4570206_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP040545.1\|WP_002888323.1\|4571026_4571404_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP040545.1\|WP_002888349.1\|4553498_4555856_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP040545.1\|WP_002888368.1\|4549267_4550977_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP040545.1\|WP_004151368.1\|4556043_4558950_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP040545.1\|WP_002888353.1\|4552627_4553323_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP040545.1\|WP_002888321.1\|4571408_4572257_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP040545.1\|WP_002888373.1\|4547188_4547956_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP040545.1\|WP_002888332.1\|4564450_4565278_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP040545.1\|WP_002888320.1\|4572512_4572992_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP040545.1\|WP_002888324.1\|4570202_4571024_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP040545.1\|WP_002888357.1\|4550987_4552490_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP040545.1\|WP_004147026.1\|4565521_4567870_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP040545.1\|WP_002888348.1\|4558962_4559622_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP040545.1\|WP_002888340.1\|4562104_4563730_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP040545.1\|WP_002888345.1\|4560415_4561780_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP040545.1\|WP_002888337.1\|4563719_4564418_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP040545.1\|WP_002888329.1\|4567924_4569211_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP040545.1\|WP_002888370.1\|4548084_4548930_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0

>NZ_CP040545.1|WP_002888345.1|4560415_4561780_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP040545.1|WP_002888347.1|4559696_4560236_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP040545.1|WP_002888348.1|4558962_4559622_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP040545.1|WP_004151368.1|4556043_4558950_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP040545.1|WP_002888349.1|4553498_4555856_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP040545.1|WP_002888353.1|4552627_4553323_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP040545.1|WP_002888357.1|4550987_4552490_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP040545.1|WP_002888368.1|4549267_4550977_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP040545.1|WP_002888370.1|4548084_4548930_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP040545.1|WP_002888373.1|4547188_4547956_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP040545.1|WP_002888340.1|4562104_4563730_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP040545.1|WP_002888337.1|4563719_4564418_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP040545.1|WP_002888332.1|4564450_4565278_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP040545.1|WP_004147026.1|4565521_4567870_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP040545.1|WP_002888329.1|4567924_4569211_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP040545.1|WP_002888327.1|4569216_4570206_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP040545.1|WP_002888324.1|4570202_4571024_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP040545.1|WP_002888323.1|4571026_4571404_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP040545.1|WP_002888321.1|4571408_4572257_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP040545.1|WP_002888320.1|4572512_4572992_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

422265 : 455523

uncultured_Caudovirales_phage(73.33%)

terminase,integrase,protease,capsid,tail,portal,tRNA,head

attL 439873:439890|attR 455868:455885

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|422265_423213_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|423227_423737_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|423865_424990_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|424961_425435_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|425460_426003_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|426007_426580_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|426583_427402_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|427398_427656_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|427631_428186_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|433981_434203_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|434496_437607_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|437619_438759_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|439137_439788_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
439873:439890	attL	NA	NA	NA	NA
WP_004150971.1\|440063_441290_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|441382_442324_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|442505_442790_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|442800_443580_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_024194847.1\|443703_443898_-	hypothetical protein	NA	NA	NA	NA
WP_106918304.1\|444031_444301_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|444293_444482_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|444474_444789_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|444785_445154_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|445150_445516_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|445515_447651_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|447993_448329_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|448377_448890_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|449153_450320_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|450371_450932_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|450933_452175_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|452171_452507_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|452503_452803_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|452802_453246_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004198610.1\|453372_453564_+	hypothetical protein	NA	NA	NA	NA
WP_000113647.1\|453521_453878_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|453861_455523_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
455868:455885	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1205080 : 1254224

Salmonella_phage(80.0%)

terminase,plate,integrase,coat,lysis,tRNA,capsid,tail,transposase,portal,head

attL 1196671:1196687|attR 1231697:1231713

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1196671:1196687	attL	NA	NA	NA	NA
WP_000019445.1\|1205080_1206061_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_062955148.1\|1206106_1207105_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-183	94.5
WP_004151019.1\|1207107_1207737_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1207859_1208102_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1208134_1208644_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1208651_1208852_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1208815_1209154_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1209221_1209455_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1209454_1209682_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1209678_1210530_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1210526_1212911_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_009483812.1\|1213140_1213392_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1213391_1214876_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004151011.1\|1214983_1215172_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1215183_1215417_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1215512_1216196_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1216182_1217262_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1217261_1218263_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1218784_1219054_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1219110_1220154_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1220153_1221917_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1222057_1222891_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1222907_1223960_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1223963_1224617_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1224712_1225177_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1225176_1225380_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1225383_1225599_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1225579_1226089_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1226093_1226477_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1226473_1226902_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_085955118.1\|1226831_1227035_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.0e-23	77.6
WP_004150997.1\|1226997_1227420_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1227412_1227859_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1227881_1228748_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1228842_1229415_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1229411_1229774_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1229760_1230669_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1230661_1231333_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1231334_1233284_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
1231697:1231713	attR	NA	NA	NA	NA
WP_004200602.1\|1233293_1234412_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1234463_1235537_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1235685_1236858_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1236867_1237383_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1237435_1237735_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1237749_1237869_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_004150984.1\|1237861_1240492_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.9e-115	41.9
WP_004150983.1\|1240488_1240974_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1240970_1242065_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1242131_1242350_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1242377_1242755_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1243358_1243841_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_004188817.1\|1243951_1244428_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1244417_1244708_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1244774_1245116_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914159.1\|1245263_1246925_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1247011_1247890_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1248014_1248605_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1248724_1250011_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1250030_1250822_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1250985_1252350_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1252609_1252858_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1252876_1253425_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1253456_1254224_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1358940 : 1432200

Salmonella_phage(37.5%)

terminase,holin,integrase,protease,tail,transposase

attL 1359935:1359952|attR 1434948:1434965

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151980.1\|1358940_1360407_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
1359935:1359952	attL	NA	NA	NA	NA
WP_004151979.1\|1360474_1362052_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_062955102.1\|1362243_1363494_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	5.8e-205	84.4
WP_063002073.1\|1363436_1363679_-	hypothetical protein	NA	NA	NA	NA
WP_004197356.1\|1363675_1364269_-	MT-A70 family protein	T1SA14	Salmonella_phage	6.3e-109	91.9
WP_062955103.1\|1364265_1364928_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	1.2e-47	46.6
WP_048264082.1\|1364924_1365083_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.1e-17	78.8
WP_009485475.1\|1365075_1365369_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_062955104.1\|1365478_1365727_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	4.9e-31	76.8
WP_062955105.1\|1365775_1366657_-	recombinase RecT	T1SBJ5	Salmonella_phage	8.9e-136	84.3
WP_062955106.1\|1366653_1367475_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.8e-130	80.2
WP_004164029.1\|1367471_1367771_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004144290.1\|1368137_1368719_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_004152538.1\|1368873_1369107_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152537.1\|1369253_1369463_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004207253.1\|1369462_1370230_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_032418532.1\|1370226_1371012_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_048328152.1\|1371131_1371479_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.5e-50	82.6
WP_062955107.1\|1371671_1372082_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	4.3e-16	45.1
WP_032441402.1\|1372065_1372257_+	hypothetical protein	NA	NA	NA	NA
WP_032441401.1\|1372253_1372898_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	8.0e-110	79.3
WP_072200041.1\|1373191_1373659_+	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.3e-37	51.7
WP_029602865.1\|1373658_1373952_+	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
WP_050491799.1\|1373948_1374569_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.0e-29	40.7
WP_032441458.1\|1374568_1374772_+	hypothetical protein	NA	NA	NA	NA
WP_023339258.1\|1374764_1375103_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.8e-44	80.0
WP_004152765.1\|1375199_1376684_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|1376683_1376935_-	hypothetical protein	NA	NA	NA	NA
WP_032418540.1\|1377087_1377345_+	hypothetical protein	NA	NA	NA	NA
WP_032441400.1\|1377422_1378007_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.2e-90	88.6
WP_062955142.1\|1378003_1379479_+	hypothetical protein	Q858H3	Salmonella_phage	6.4e-280	93.1
WP_004200550.1\|1379522_1379894_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.7e-59	91.9
WP_072354015.1\|1379943_1380186_+	hypothetical protein	NA	NA	NA	NA
WP_004141368.1\|1380647_1380854_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_032441398.1\|1380868_1382551_+\|tail	tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	1.5e-264	84.4
WP_004152446.1\|1382547_1382844_+	hypothetical protein	T1SBI9	Salmonella_phage	1.2e-33	70.4
WP_032441397.1\|1382846_1383527_+	peptidase	G9L6C4	Escherichia_phage	6.1e-76	84.0
WP_004200546.1\|1383541_1384528_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_020953461.1\|1384581_1385019_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
WP_062955141.1\|1385029_1385371_+	hypothetical protein	G9L6C7	Escherichia_phage	2.4e-36	70.8
WP_004152441.1\|1385421_1385745_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_062955139.1\|1385744_1386350_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.0e-87	77.0
WP_062955138.1\|1386349_1388827_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.4
WP_004152438.1\|1388826_1389291_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_032447858.1\|1389290_1389830_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.0e-71	80.0
WP_062955137.1\|1389840_1392375_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	84.1
WP_062955136.1\|1392374_1394285_+	hypothetical protein	Q858F9	Salmonella_phage	5.4e-287	82.7
WP_062955135.1\|1394284_1397041_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	95.4
WP_062955134.1\|1397037_1397232_+	hypothetical protein	Q858F7	Salmonella_phage	6.5e-15	67.2
WP_071787028.1\|1397266_1397419_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	2.5e-14	83.7
WP_062955133.1\|1397517_1397814_-	hypothetical protein	T1SA06	Salmonella_phage	6.9e-24	63.9
WP_062955131.1\|1400641_1400905_+	hypothetical protein	NA	NA	NA	NA
WP_123766426.1\|1400945_1401773_-	hypothetical protein	NA	NA	NA	NA
WP_000608644.1\|1404016_1405279_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_077265603.1\|1406387_1407704_+	right-handed parallel beta-helix repeat-containing protein	A0A0K2FI18	Enterobacter_phage	2.3e-34	32.3
WP_062955010.1\|1407790_1408195_+	hypothetical protein	T1SA79	Salmonella_phage	8.7e-54	81.1
WP_023339240.1\|1408181_1408487_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	81.4
WP_062955009.1\|1408476_1409106_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.8e-90	76.9
WP_062955008.1\|1409102_1409603_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.3e-59	76.9
WP_004152009.1\|1409789_1411658_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_004162150.1\|1411641_1412820_-	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_002913847.1\|1413113_1414346_-	MFS transporter	NA	NA	NA	NA
WP_002913846.1\|1414443_1415331_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002913843.1\|1415427_1415619_-	DUF2633 family protein	G9L6F2	Escherichia_phage	3.3e-19	79.3
WP_002913841.1\|1415971_1418200_+	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_002913839.1\|1418253_1419786_-	exopolyphosphatase	NA	NA	NA	NA
WP_002913838.1\|1419789_1421850_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_004152007.1\|1422030_1422672_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.2e-28	41.1
WP_002913836.1\|1422668_1423706_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_002913833.1\|1423969_1424863_+	ROK family protein	NA	NA	NA	NA
WP_002913829.1\|1424872_1426306_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913827.1\|1426523_1427150_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913824.1\|1427245_1428532_+	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_020947395.1\|1428630_1429332_+	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913812.1\|1429328_1430240_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_002913810.1\|1430367_1430727_-	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_002913807.1\|1430736_1432200_-\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
1434948:1434965	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1743397 : 1750303

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1743397_1744261_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004899467.1\|1744271_1745045_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|1745286_1746180_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1746425_1747787_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1748105_1748828_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_062955084.1\|1748824_1750303_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_5

1793900 : 1806938

Escherichia_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063002077.1\|1793900_1794770_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_048996045.1\|1794801_1795692_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_004175260.1\|1795706_1796261_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_000704907.1\|1796440_1797607_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
WP_016947628.1\|1798035_1798155_-	small membrane protein	NA	NA	NA	NA
WP_062955151.1\|1798555_1799560_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	4.0e-31	29.2
WP_075053193.1\|1799515_1799797_+	hypothetical protein	NA	NA	NA	NA
WP_073547076.1\|1800399_1801464_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-105	55.0
WP_063002077.1\|1801477_1802347_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_048996045.1\|1802378_1803269_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_015958693.1\|1803283_1803838_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_094819161.1\|1803924_1804755_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_062955124.1\|1804783_1805617_+	ABC transporter permease	NA	NA	NA	NA
WP_062955125.1\|1805606_1806938_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.9e-15	29.1

DBSCAN-SWA_6

2773489 : 2784376

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|2773489_2776597_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|2776651_2777917_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2777947_2779036_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2779122_2779383_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2779680_2780541_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2780561_2781323_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|2781583_2782486_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004151609.1\|2782497_2783763_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_002210516.1\|2783755_2784376_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3013781 : 3052247

uncultured_Caudovirales_phage(32.65%)

terminase,integrase

attL 3043360:3043374|attR 3049369:3049383

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152576.1\|3013781_3014648_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152575.1\|3014647_3015421_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|3015417_3016614_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|3016613_3016967_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|3016968_3017622_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152571.1\|3017675_3018242_-	hypothetical protein	NA	NA	NA	NA
WP_004173705.1\|3018278_3018464_+	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|3018516_3018858_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|3018857_3019880_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152568.1\|3019882_3020185_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	55.2
WP_004152567.1\|3020185_3020785_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004152566.1\|3020784_3022788_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3022777_3022930_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3022965_3023391_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004199809.1\|3023394_3023835_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
WP_004152177.1\|3023845_3024991_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3024994_3025435_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3025529_3025916_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3025915_3026422_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3026418_3026838_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3026806_3027088_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3027127_3028069_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3028080_3028575_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|3028578_3029781_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|3029832_3030381_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3030436_3031888_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3032125_3033526_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152171.1\|3033476_3034229_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-12	66.0
WP_004152170.1\|3034330_3034651_-	hypothetical protein	NA	NA	NA	NA
WP_064754420.1\|3034743_3035001_-	hypothetical protein	S5FXQ4	Shigella_phage	2.3e-23	70.9
WP_004153952.1\|3034885_3035275_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3035271_3035802_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3035804_3036053_-	hypothetical protein	NA	NA	NA	NA
WP_004152167.1\|3036458_3037241_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3037237_3037714_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004198233.1\|3037710_3038673_-	zinc-binding domain of primase-helicase family protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3038674_3040333_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152163.1\|3040641_3040935_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	2.8e-38	97.6
WP_004152162.1\|3040909_3041131_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3041228_3041897_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3042067_3042382_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3042374_3042563_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152158.1\|3042732_3043098_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152157.1\|3043090_3043345_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004177208.1\|3043316_3043535_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
3043360:3043374	attL	NA	NA	NA	NA
WP_004152156.1\|3043531_3043957_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3043953_3044148_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|3044144_3044972_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|3045076_3045595_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3045600_3046311_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3046300_3046525_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004152150.1\|3046521_3046734_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152149.1\|3046730_3047210_+	hypothetical protein	NA	NA	NA	NA
WP_004152148.1\|3047388_3047631_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3047611_3048793_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3048989_3049538_+	DJ-1/PfpI family protein	NA	NA	NA	NA
3049369:3049383	attR	NA	NA	NA	NA
WP_004152145.1\|3049736_3051269_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3051485_3052247_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_8

3085180 : 3139273

Enterobacteria_phage(33.33%)

transposase,protease,holin,integrase

attL 3084962:3084977|attR 3114631:3114646

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3084962:3084977	attL	NA	NA	NA	NA
WP_002901815.1\|3085180_3085852_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|3086038_3086866_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|3086941_3088207_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|3088208_3088628_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004152765.1\|3088707_3090192_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3090191_3090443_-	hypothetical protein	NA	NA	NA	NA
WP_004152776.1\|3091089_3091512_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_001067855.1\|3092104_3092809_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000679427.1\|3093424_3093772_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|3093935_3094727_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001067855.1\|3095708_3096413_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_062955100.1\|3096449_3096737_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	4.4e-36	95.4
WP_004218565.1\|3096733_3097273_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_024940884.1\|3097269_3097569_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_022644626.1\|3098047_3099094_-\|transposase	IS481-like element ISKpn28 family transposase	A0A0M3LR35	Mannheimia_phage	1.3e-05	21.9
WP_004232548.1\|3099319_3100009_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218534.1\|3100008_3100149_-	YlcG family protein	NA	NA	NA	NA
WP_004218533.1\|3100145_3100784_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218532.1\|3100776_3101445_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004243010.1\|3101441_3101609_-	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218531.1\|3101589_3102057_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004218530.1\|3102577_3103606_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|3103813_3104059_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|3104114_3104417_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|3104413_3105262_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|3105258_3106119_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3106204_3106426_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3106466_3106694_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3106805_3107504_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_019405077.1\|3107526_3107646_+	hypothetical protein	NA	NA	NA	NA
WP_004201109.1\|3107791_3108868_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3108949_3109153_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004135674.1\|3109581_3109776_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3109864_3110149_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3110164_3111010_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_088224434.1\|3111006_3111294_+	hypothetical protein	NA	NA	NA	NA
WP_004201102.1\|3111295_3111976_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3111972_3112401_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3112397_3113060_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004190725.1\|3113056_3113371_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_004153574.1\|3113267_3114455_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
WP_004151901.1\|3114631_3115522_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
3114631:3114646	attR	NA	NA	NA	NA
WP_004140266.1\|3115521_3116514_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3116515_3117325_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_004176464.1\|3117369_3118800_-	cytosine permease	NA	NA	NA	NA
WP_004152967.1\|3118996_3119539_+	HutD family protein	NA	NA	NA	NA
WP_004140277.1\|3119737_3120526_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_004151905.1\|3120716_3121874_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_002901787.1\|3121955_3123890_+	exoribonuclease II	A0A2H4UVB7	Bodo_saltans_virus	7.0e-08	24.6
WP_002901786.1\|3124048_3124228_+	hypothetical protein	NA	NA	NA	NA
WP_002901785.1\|3124299_3125049_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_004151906.1\|3125321_3125543_+	osmotically-inducible lipoprotein OsmB	NA	NA	NA	NA
WP_002901782.1\|3125674_3126001_-	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_004151907.1\|3126000_3126738_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_002901781.1\|3126929_3128099_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_002901780.1\|3128105_3128414_-	LapA family protein	NA	NA	NA	NA
WP_002901779.1\|3128549_3129317_-	phosphatidylglycerophosphatase B	NA	NA	NA	NA
WP_002901778.1\|3129480_3130083_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-43	49.5
WP_002901777.1\|3130129_3132802_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_002901776.1\|3133190_3133358_-	YmiA family putative membrane protein	NA	NA	NA	NA
WP_002901772.1\|3133603_3134578_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_002901763.1\|3134923_3137521_-	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	2.9e-89	35.6
WP_002901761.1\|3137927_3138179_+	YciN family protein	NA	NA	NA	NA
WP_002901758.1\|3138226_3139273_-\|protease	protease SohB	NA	NA	NA	NA

DBSCAN-SWA_9

3244997 : 3333906

Klebsiella_phage(45.24%)

terminase,integrase,tRNA,lysis,tail,portal,head

attL 3271800:3271814|attR 3331717:3331731

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3244997_3245498_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3245614_3246061_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901073.1\|3246044_3246836_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004150777.1\|3246937_3248122_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3248153_3248846_-	CTP synthase	NA	NA	NA	NA
WP_004150778.1\|3248991_3249501_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|3249487_3249844_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004150780.1\|3249833_3250073_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004150781.1\|3250373_3251387_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
WP_004150782.1\|3251444_3251546_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_099119317.1\|3251545_3251620_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3251737_3251863_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3251922_3252186_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3252316_3252955_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3253044_3253959_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150784.1\|3254620_3255664_-	type II asparaginase	NA	NA	NA	NA
WP_004150785.1\|3255966_3257175_+	HD domain-containing protein	NA	NA	NA	NA
WP_004150787.1\|3257248_3259033_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3259039_3259930_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3260050_3261559_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|3261869_3262556_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3262953_3263133_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3263172_3263805_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3264371_3264569_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|3264684_3265695_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004150793.1\|3265691_3267098_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|3267153_3268041_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3268057_3268564_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150794.1\|3268590_3269085_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3269175_3269361_-	general stress protein	NA	NA	NA	NA
WP_004140529.1\|3269982_3271176_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3271288_3271516_+	DUF1272 domain-containing protein	NA	NA	NA	NA
3271800:3271814	attL	NA	NA	NA	NA
WP_004150797.1\|3271952_3272276_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3272268_3272661_+	amino acid-binding protein	NA	NA	NA	NA
WP_004150799.1\|3272657_3273371_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3273643_3273796_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_023328083.1\|3273950_3275447_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.4e-125	63.7
WP_062955111.1\|3275515_3288220_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.1
WP_023328085.1\|3288282_3288876_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	76.6
WP_047666390.1\|3288902_3289325_-	hypothetical protein	J9Q806	Salmonella_phage	5.9e-29	50.0
WP_047666389.1\|3289366_3290077_-	peptidase P60	Q6UAW4	Klebsiella_phage	1.9e-136	90.3
WP_023328087.1\|3290078_3290834_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.5
WP_023328088.1\|3290830_3291169_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-57	88.4
WP_023328089.1\|3291168_3294504_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.3
WP_071836352.1\|3294503_3294722_-	hypothetical protein	Q6UAW9	Klebsiella_phage	5.4e-34	90.5
WP_014228914.1\|3294736_3295102_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_023328090.1\|3295159_3295621_-	hypothetical protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_023328091.1\|3295652_3296054_-	hypothetical protein	Q6UAX1	Klebsiella_phage	2.3e-62	94.0
WP_017880258.1\|3296050_3296440_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_023328092.1\|3296420_3296759_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.8e-53	90.2
WP_020317538.1\|3296755_3297073_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_049010370.1\|3297053_3297314_-	hypothetical protein	Q6UAX5	Klebsiella_phage	7.4e-22	60.5
WP_014907815.1\|3298735_3299656_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_023279520.1\|3299692_3300952_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.8e-222	89.8
WP_017898992.1\|3300951_3301131_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_021462603.1\|3301124_3302846_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.5e-190	57.4
WP_012542168.1\|3302845_3303280_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_014907818.1\|3303528_3303960_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
WP_023297386.1\|3303956_3304280_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3304231_3304594_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_032749552.1\|3304920_3305145_+	hypothetical protein	NA	NA	NA	NA
WP_049115059.1\|3305183_3305621_-	hypothetical protein	NA	NA	NA	NA
WP_016160650.1\|3306570_3306921_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_032432826.1\|3306917_3307415_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	84.6
WP_016160648.1\|3307414_3307630_-\|lysis	phage S lysis protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_004147999.1\|3308547_3308697_+	small membrane protein	NA	NA	NA	NA
WP_004147997.1\|3309434_3309638_+	hypothetical protein	NA	NA	NA	NA
WP_025861432.1\|3309881_3310484_-	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-76	68.6
WP_062955112.1\|3310500_3311532_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-96	49.6
WP_017898980.1\|3311531_3311735_-	hypothetical protein	NA	NA	NA	NA
WP_025861428.1\|3311731_3312124_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_077255782.1\|3312164_3312455_-	hypothetical protein	H6WRY6	Salmonella_phage	8.0e-17	56.9
WP_025368263.1\|3312466_3312700_-	DinI family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
WP_138355672.1\|3315084_3315180_-	hypothetical protein	NA	NA	NA	NA
WP_138355674.1\|3315142_3315481_-	hypothetical protein	NA	NA	NA	NA
WP_062954989.1\|3318734_3319604_+	hypothetical protein	NA	NA	NA	NA
WP_062954977.1\|3319692_3321084_+	hypothetical protein	NA	NA	NA	NA
WP_032443841.1\|3321432_3321873_-	hypothetical protein	NA	NA	NA	NA
WP_047667474.1\|3321886_3322351_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-63	72.2
WP_077265602.1\|3322343_3323348_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-31	40.0
WP_046622349.1\|3323407_3323962_-	hypothetical protein	NA	NA	NA	NA
WP_071561166.1\|3323964_3324189_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-19	62.5
WP_077257742.1\|3324277_3324715_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.3e-39	62.2
WP_040234937.1\|3325036_3325351_-	hypothetical protein	NA	NA	NA	NA
WP_099143961.1\|3325513_3325732_+	hypothetical protein	NA	NA	NA	NA
WP_023279538.1\|3325741_3325936_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3325978_3326323_+	transcriptional regulator	NA	NA	NA	NA
WP_062954978.1\|3326464_3328603_+	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	5.6e-99	42.7
WP_012542206.1\|3328655_3328901_+	excisionase	NA	NA	NA	NA
WP_032418030.1\|3328881_3330009_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_004150800.1\|3330126_3331377_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004150801.1\|3331617_3332268_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3331717:3331731	attR	NA	NA	NA	NA
WP_004150802.1\|3332284_3332743_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3332799_3333906_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_10

3550125 : 3644986

Salmonella_phage(55.93%)

terminase,plate,integrase,lysis,protease,capsid,tail,portal,tRNA,head

attL 3605651:3605669|attR 3645061:3645079

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3550125_3551418_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3551508_3552852_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3552860_3553472_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3553594_3557848_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3557983_3558478_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004141839.1\|3558983_3559979_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.3e-62	44.0
WP_002898017.1\|3560093_3561860_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3561860_3563582_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3563626_3564328_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3564681_3564900_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3565020_3567300_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3567330_3567648_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3567973_3568195_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3568271_3570212_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3570208_3571324_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3571470_3573129_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3573548_3574244_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3574359_3575259_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3575402_3577055_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3577065_3578034_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3578245_3578680_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3578831_3580550_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3580588_3581590_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3581600_3583043_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3583130_3584144_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3584140_3584971_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3585002_3586142_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3587019_3587535_+	lipoprotein	NA	NA	NA	NA
WP_032419144.1\|3587761_3588490_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3588510_3589242_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3589248_3589965_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3589964_3590633_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3590816_3591548_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3591590_3593063_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3593059_3593776_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3593854_3594982_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3595023_3595512_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3595569_3596415_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3596411_3597365_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3597375_3598509_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3598672_3599785_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3600133_3600613_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3600701_3601604_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3602425_3602713_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3602915_3603179_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3603185_3603569_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|3603835_3605521_+	aspartate:alanine antiporter	NA	NA	NA	NA
3605651:3605669	attL	NA	NA	NA	NA
WP_000972391.1\|3605740_3605959_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3606050_3607151_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3607147_3607633_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896222.1\|3607629_3610257_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896220.1\|3610249_3610369_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3610383_3610683_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3610735_3611251_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3611260_3612433_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3612571_3613648_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896188.1\|3613677_3613881_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3613877_3614609_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|3614612_3617564_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|3617565_3618165_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3618157_3619066_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_032441567.1\|3619052_3619415_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.9e-48	83.9
WP_002896177.1\|3619411_3619984_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004150857.1\|3620078_3620771_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3620767_3621214_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3621206_3621638_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896168.1\|3621733_3622162_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3622158_3622542_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3622546_3623056_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3623036_3623252_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3623255_3623459_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3623458_3623923_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3624018_3624669_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3624672_3625731_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3625747_3626581_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3626723_3628490_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3628489_3629515_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3629576_3631319_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3631594_3632272_-	hypothetical protein	NA	NA	NA	NA
WP_001316229.1\|3632386_3632692_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3632630_3632819_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004152765.1\|3632919_3634404_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3634403_3634655_-	hypothetical protein	NA	NA	NA	NA
WP_004150862.1\|3634882_3637297_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3637293_3638151_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3638147_3638375_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3638374_3638608_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3638675_3639017_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3638980_3639181_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3639188_3639698_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3639730_3639952_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3640097_3640976_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3640987_3641932_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|3642030_3643515_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3643514_3643766_-	hypothetical protein	NA	NA	NA	NA
WP_004151720.1\|3643933_3644986_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
3645061:3645079	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4298582 : 4310235

Enterobacteria_phage(70.0%)

integrase

attL 4299032:4299046|attR 4322088:4322102

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004144574.1\|4298582_4299686_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4299032:4299046	attL	NA	NA	NA	NA
WP_002889940.1\|4299696_4300950_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_094819114.1\|4301302_4302493_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.9e-144	62.4
WP_004152029.1\|4302480_4303431_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_004152979.1\|4303430_4303856_+	hypothetical protein	NA	NA	NA	NA
WP_004152202.1\|4304423_4304990_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|4305007_4305253_-	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_062956184.1\|4305249_4305987_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	59.4
WP_002889915.1\|4306528_4306795_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|4306791_4307349_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4307345_4307573_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4307569_4307890_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4307901_4310235_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4322088:4322102	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP040547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2428 : 30302

Enterobacteria_phage(30.0%)

integrase,transposase

attL 790:804|attR 26497:26511

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
790:804	attL	NA	NA	NA	NA
WP_013214009.1\|2428_3208_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.4e-52	92.0
WP_011977814.1\|3391_4396_-	hypothetical protein	NA	NA	NA	NA
WP_011977813.1\|4425_4629_-	hypothetical protein	NA	NA	NA	NA
WP_013214008.1\|4674_5196_-	hypothetical protein	NA	NA	NA	NA
WP_032738650.1\|5253_5604_-	hypothetical protein	NA	NA	NA	NA
WP_011977810.1\|5682_6627_-	hypothetical protein	NA	NA	NA	NA
WP_004213565.1\|7211_8186_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_023302803.1\|8822_9731_+	HNH endonuclease	NA	NA	NA	NA
WP_004213569.1\|10117_10468_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.2e-20	53.3
WP_023302802.1\|10611_11043_-	silver-binding protein SilE	NA	NA	NA	NA
WP_004213850.1\|11594_12518_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
WP_048333569.1\|12726_13170_-	hypothetical protein	NA	NA	NA	NA
WP_048333570.1\|14713_15184_+	hypothetical protein	NA	NA	NA	NA
WP_004213850.1\|15250_16174_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
WP_004213594.1\|16407_16902_-	hypothetical protein	NA	NA	NA	NA
WP_000427619.1\|17187_18192_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000429836.1\|18270_18705_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294663.1\|18776_19127_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000732292.1\|19140_19416_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001340589.1\|19451_19874_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000105636.1\|19925_21620_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|21637_22000_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000993386.1\|21996_22233_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_000204520.1\|22229_22937_+	EAL domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|24248_24953_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014343468.1\|24992_25466_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
WP_013213985.1\|25588_26569_+\|transposase	IS481-like element ISKpn27 family transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
26497:26511	attR	NA	NA	NA	NA
WP_004199234.1\|26844_27726_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_013213987.1\|28960_29257_-	transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|29597_30302_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

57403 : 102525

Escherichia_phage(47.06%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|57403_58108_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_032297072.1\|58508_59936_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_001340581.1\|59935_60607_-	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_000399794.1\|60650_61217_-	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_000012106.1\|61238_61550_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_021519752.1\|61564_61930_-	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_001254386.1\|61963_62191_-	conjugal transfer relaxosome protein TraY	NA	NA	NA	NA
WP_015059009.1\|62284_62971_-	PAS domain-containing protein	NA	NA	NA	NA
WP_000124981.1\|63161_63545_-	relaxosome protein TraM	NA	NA	NA	NA
WP_015059008.1\|63821_64469_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_001234445.1\|64765_65587_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	3.4e-44	38.2
WP_001272251.1\|65697_65994_-	hypothetical protein	NA	NA	NA	NA
WP_012881134.1\|66056_66293_+	hypothetical protein	NA	NA	NA	NA
WP_001309236.1\|66467_66686_-	hypothetical protein	NA	NA	NA	NA
WP_001312861.1\|66908_67067_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001276217.1\|67346_68066_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_000845953.1\|68062_68497_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_000006003.1\|70649_70883_-	DUF905 family protein	NA	NA	NA	NA
WP_000290834.1\|70940_71468_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	6.0e-47	74.4
WP_012881134.1\|71532_71769_+	hypothetical protein	NA	NA	NA	NA
WP_072206670.1\|71943_72159_-	transporter	NA	NA	NA	NA
WP_021537720.1\|72062_72311_-	hypothetical protein	NA	NA	NA	NA
WP_015059007.1\|72310_72874_-	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	6.1e-21	37.3
WP_000170695.1\|72920_74282_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_000218642.1\|74333_74564_-	hypothetical protein	NA	NA	NA	NA
WP_001371314.1\|74826_75084_+	hypothetical protein	NA	NA	NA	NA
WP_012372796.1\|75963_77631_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-164	53.3
WP_001027493.1\|77944_78136_-	hypothetical protein	NA	NA	NA	NA
WP_000271762.1\|78132_78555_-	DUF1380 family protein	NA	NA	NA	NA
WP_001198928.1\|78601_79027_-	antirestriction protein	NA	NA	NA	NA
WP_011161242.1\|78999_79572_-	YubH family protein	NA	NA	NA	NA
WP_000274503.1\|80271_80706_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104881.1\|80719_80941_-	hypothetical protein	NA	NA	NA	NA
WP_000085883.1\|80941_81625_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.6e-29	37.4
WP_072109530.1\|81581_81761_+	hypothetical protein	NA	NA	NA	NA
WP_032146011.1\|81701_81995_-	hypothetical protein	NA	NA	NA	NA
WP_000959884.1\|82141_83104_+	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	4.1e-94	53.9
WP_000361389.1\|83106_83457_+	protein stbB	NA	NA	NA	NA
WP_001333089.1\|83579_83861_-	hypothetical protein	NA	NA	NA	NA
WP_071557810.1\|85671_85812_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|85802_86507_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012372818.1\|86956_87712_-	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_000027057.1\|87881_88742_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_064441864.1\|88924_89461_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.8e-84	100.0
WP_000957857.1\|89552_89741_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|90418_91123_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014839980.1\|91508_91925_+	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
WP_014839979.1\|91929_92448_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|92513_93218_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|94328_95033_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012579081.1\|96783_97707_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
WP_013188475.1\|97786_98662_-	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_001067855.1\|99172_99877_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000439434.1\|101187_101520_-	hypothetical protein	NA	NA	NA	NA
WP_000557619.1\|101521_101779_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|101871_102525_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

108935 : 141317

Escherichia_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|108935_109640_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_042863651.1\|109760_112727_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.8
WP_000427619.1\|112805_113810_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|113991_114168_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000743213.1\|114289_114514_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|114510_115248_-	recombinase family protein	NA	NA	NA	NA
WP_001550559.1\|115354_115846_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|115879_116584_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001239317.1\|116663_117164_+	hypothetical protein	NA	NA	NA	NA
WP_001011939.1\|117313_117955_+	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001067855.1\|118087_118792_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_042934582.1\|119260_119818_-	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|120469_121450_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_015493087.1\|121963_122359_+	hypothetical protein	NA	NA	NA	NA
WP_015493086.1\|122355_122967_+	DUF2913 family protein	NA	NA	NA	NA
WP_015493085.1\|122963_123914_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	6.6e-76	55.6
WP_040219232.1\|124060_124261_-	hypothetical protein	NA	NA	NA	NA
WP_022652286.1\|124314_124947_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.5e-07	31.9
WP_015493083.1\|125309_126515_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.1e-205	89.2
WP_016479949.1\|126511_127483_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-113	68.9
WP_015493081.1\|127618_128890_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	6.1e-154	63.0
WP_015493080.1\|128889_129312_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
WP_015493079.1\|129491_130163_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	5.1e-83	61.7
WP_002211749.1\|130521_131199_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.9
WP_015493077.1\|131198_131420_+	hypothetical protein	NA	NA	NA	NA
WP_015493076.1\|131430_131850_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_015493075.1\|131903_132683_+	hypothetical protein	NA	NA	NA	NA
WP_015493074.1\|133087_133594_+	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	4.8e-09	31.8
WP_015493073.1\|133636_133828_+	hypothetical protein	NA	NA	NA	NA
WP_032072906.1\|134014_134275_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.1e-12	46.2
WP_015493071.1\|135252_135483_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_008324186.1\|137605_138037_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_008324185.1\|138033_138762_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_008324183.1\|138758_139082_+	hypothetical protein	I3UM57	Rhodobacter_phage	6.0e-13	38.1
WP_015493069.1\|139143_139503_+	hypothetical protein	NA	NA	NA	NA
WP_008324180.1\|140128_140503_+	hypothetical protein	A0A248SL90	Klebsiella_phage	2.2e-27	62.7
WP_001067855.1\|140612_141317_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_4

167784 : 176967

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001568041.1\|167784_168486_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2
WP_001568040.1\|168922_169153_-	hypothetical protein	NA	NA	NA	NA
WP_013214012.1\|169215_169887_-	mediator of plasmid stability	NA	NA	NA	NA
WP_004152353.1\|169889_170861_-	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_004152765.1\|171109_172594_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|172593_172845_-	hypothetical protein	NA	NA	NA	NA
WP_001568036.1\|173003_173435_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_013214011.1\|173434_174706_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	63.7
WP_086523286.1\|174787_175765_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_011977818.1\|175761_176967_-	ParA family protein	A0A077SL49	Escherichia_phage	5.3e-163	69.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP040548

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18072 : 27285

Escherichia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004187394.1\|18072_18321_-	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	53.0
WP_004187397.1\|18317_18779_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|19432_20137_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000239529.1\|20428_20704_-	hypothetical protein	NA	NA	NA	NA
WP_000633913.1\|20697_21342_-	AAA family ATPase	A0A222YXS3	Escherichia_phage	1.9e-39	43.0
WP_001103690.1\|21570_22542_+	hypothetical protein	A0A222YXF2	Escherichia_phage	7.4e-67	42.9
WP_000340829.1\|22546_22939_+	hypothetical protein	NA	NA	NA	NA
WP_000457523.1\|22943_24215_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.9e-142	60.5
WP_000109071.1\|24214_24652_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
WP_000618110.1\|24648_24897_-	DinI-like family protein	Q2A098	Sodalis_phage	1.9e-14	48.0
WP_032072581.1\|25007_25277_+	hypothetical protein	NA	NA	NA	NA
WP_072748701.1\|25314_26217_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000086148.1\|26601_27285_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.1e-29	36.4

DBSCAN-SWA_2

30548 : 38978

Pseudomonas_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012372796.1\|30548_32216_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-164	53.3
WP_032158038.1\|32929_33436_-	hypothetical protein	NA	NA	NA	NA
WP_001276107.1\|33382_33910_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	3.5e-47	73.5
WP_000006020.1\|33967_34201_+	DUF905 domain-containing protein	A0A096XUX0	Cronobacter_phage	1.7e-06	53.2
WP_001145485.1\|34259_36218_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	7.3e-21	29.4
WP_001387500.1\|36272_36707_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001276270.1\|36703_37423_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001579745.1\|37419_37878_+	hypothetical protein	A0A0N7KZV3	Escherichia_phage	9.0e-15	56.6
WP_001396784.1\|38087_38978_+	DUF1472 domain-containing protein	G9FHQ1	Rhodococcus_virus	4.3e-05	27.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040546

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040545

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP040547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP040548

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection