CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP054021	Rhizobium sp. JKLM12A2 chromosome, complete genome	0 crisprs	csa3,WYL,cas3,DEDDh	9
NZ_CP054026	Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence	0 crisprs	NA	0
NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	0 crisprs	csa3	0
NZ_CP054024	Rhizobium sp. JKLM12A2 plasmid pPR12A203, complete sequence	0 crisprs	NA	27
NZ_CP054025	Rhizobium sp. JKLM12A2 plasmid pPR12A204, complete sequence	0 crisprs	NA	0
NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	0 crisprs	DEDDh,RT,csa3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

326533 : 337365

uncultured_Mediterranean_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003539661.1\|326533_327043_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.5e-45	59.4
WP_138389195.1\|327071_327644_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.2e-42	52.0
WP_138389196.1\|327686_328181_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.8e-24	37.2
WP_138389197.1\|328316_328604_+	hypothetical protein	NA	NA	NA	NA
WP_003539654.1\|328726_328882_+	hypothetical protein	NA	NA	NA	NA
WP_138389198.1\|329215_332053_-	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	8.0e-77	42.2
WP_029875185.1\|332289_332937_+	MarC family protein	NA	NA	NA	NA
WP_138389199.1\|332959_333505_-	hypothetical protein	NA	NA	NA	NA
WP_138389200.1\|333651_334161_-	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.2e-44	73.7
WP_138389201.1\|334443_337365_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.2

DBSCAN-SWA_2

598359 : 607578

uncultured_Mediterranean_phage(88.89%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138391116.1\|598359_599961_-	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	8.6e-12	29.2
WP_138391117.1\|600202_600856_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-15	34.1
WP_017991200.1\|600852_601626_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-23	30.2
WP_138391118.1\|601630_602914_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-97	45.3
WP_129420703.1\|603114_603942_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.6e-54	47.3
WP_138391119.1\|603938_604550_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_017960199.1\|604601_604793_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.6e-08	76.9
WP_138391120.1\|604975_605692_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.8e-39	47.8
WP_138391121.1\|605688_606546_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.6e-34	38.5
WP_138391122.1\|606564_607578_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.3e-24	42.0

DBSCAN-SWA_3

810587 : 821676

uncultured_Caudovirales_phage(50.0%)

protease,portal,terminase,head,integrase,tail,capsid

attL 804768:804785|attR 828124:828141

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
804768:804785	attL	NA	NA	NA	NA
WP_138387515.1\|810587_811826_-\|integrase	site-specific integrase	Q9ZWV7	Corynephage	2.9e-07	21.6
WP_130769904.1\|812040_812202_+	DNA-binding protein	NA	NA	NA	NA
WP_138387516.1\|812198_812390_+	hypothetical protein	NA	NA	NA	NA
WP_173883538.1\|812694_814272_+	AAA family ATPase	A0A1B2LRQ1	Wolbachia_phage	7.9e-34	39.7
WP_138387518.1\|814442_815585_-	restriction endonuclease	NA	NA	NA	NA
WP_138387519.1\|816479_816920_+	hypothetical protein	NA	NA	NA	NA
WP_138388010.1\|816990_818106_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.3e-32	31.2
WP_138387520.1\|818095_818632_+\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	3.5e-26	43.6
WP_138387521.1\|818628_819750_+\|capsid	phage major capsid protein	A0A141GEW2	Brucella_phage	4.8e-33	30.1
WP_138387522.1\|819818_820199_+	hypothetical protein	NA	NA	NA	NA
WP_173883539.1\|820695_820851_-	hypothetical protein	NA	NA	NA	NA
WP_138387523.1\|820974_821265_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	5.5e-10	36.4
WP_138387524.1\|821268_821676_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
828124:828141	attR	NA	NA	NA	NA

DBSCAN-SWA_4

904351 : 915056

Cyanophage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173883541.1\|904351_906562_-	esterase-like activity of phytase family protein	M4SLV1	Cyanophage	2.7e-80	42.9
WP_138387558.1\|906645_907545_-	DMT family transporter	NA	NA	NA	NA
WP_003547346.1\|907914_908190_-	HU family DNA-binding protein	A0A172Q061	Acinetobacter_phage	7.1e-07	34.1
WP_138387559.1\|908396_910814_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.1e-204	49.5
WP_003547337.1\|911215_912493_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.9e-133	58.6
WP_003547334.1\|912796_913426_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	9.4e-63	59.2
WP_138328263.1\|913802_915056_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.8e-12	33.5

DBSCAN-SWA_5

981595 : 990827

Organic_Lake_phycodnavirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138387589.1\|981595_983563_+	glycosyltransferase family 1 protein	F2Y0P4	Organic_Lake_phycodnavirus	1.5e-05	35.1
WP_138387590.1\|983586_984165_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	2.4e-33	43.1
WP_138387591.1\|984171_985227_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-94	51.2
WP_138387592.1\|985230_986103_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_138387593.1\|986127_986997_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	3.4e-95	59.2
WP_138387594.1\|987117_987729_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.0e-17	35.4
WP_138387595.1\|987728_989039_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.2e-32	40.1
WP_003547190.1\|989042_989519_-	transcriptional repressor NrdR	NA	NA	NA	NA
WP_029872910.1\|989528_990827_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	4.9e-98	51.3

DBSCAN-SWA_6

1386280 : 1437093

Rhizobium_phage(14.29%)

protease,holin,terminase,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138387813.1\|1386280_1387930_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.6e-64	32.3
WP_138328621.1\|1387998_1388406_-	transcriptional regulator	NA	NA	NA	NA
WP_003557588.1\|1388410_1388698_-	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_138387814.1\|1388869_1389169_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_138388026.1\|1389165_1389447_-	prevent-host-death protein	NA	NA	NA	NA
WP_029874339.1\|1389566_1390040_-	hypothetical protein	NA	NA	NA	NA
WP_138328625.1\|1390059_1390446_-	hypothetical protein	NA	NA	NA	NA
WP_003546399.1\|1390541_1390988_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_138387815.1\|1391408_1392167_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_003546395.1\|1392299_1393253_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_138387816.1\|1393254_1394751_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	1.5e-26	28.3
WP_138328629.1\|1395250_1395892_+	AhpC/TSA family protein	NA	NA	NA	NA
WP_138328630.1\|1395954_1396845_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_138387817.1\|1396890_1397865_+	quinone oxidoreductase	NA	NA	NA	NA
WP_138387818.1\|1398131_1399085_+	NmrA/HSCARG family protein	NA	NA	NA	NA
WP_138387819.1\|1399086_1400007_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_138328634.1\|1400115_1401153_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_138387820.1\|1401705_1403205_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	9.2e-24	28.7
WP_138328984.1\|1403316_1403691_-	hypothetical protein	NA	NA	NA	NA
WP_138328636.1\|1403760_1404165_-	hypothetical protein	NA	NA	NA	NA
WP_018449489.1\|1404355_1404658_+	hypothetical protein	NA	NA	NA	NA
WP_138328637.1\|1404800_1405064_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_138328638.1\|1405143_1405506_+	hypothetical protein	NA	NA	NA	NA
WP_173883550.1\|1405577_1405724_+	hypothetical protein	NA	NA	NA	NA
WP_138387821.1\|1405809_1406253_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_017959490.1\|1406463_1406700_+	hypothetical protein	NA	NA	NA	NA
WP_138387822.1\|1406930_1407113_+	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_128403799.1\|1407448_1407649_+	hypothetical protein	NA	NA	NA	NA
WP_012556939.1\|1408261_1408447_-	hypothetical protein	NA	NA	NA	NA
WP_138387823.1\|1408574_1409003_-	DUF1515 domain-containing protein	NA	NA	NA	NA
WP_138387824.1\|1409019_1410627_-	hypothetical protein	L7TKC4	Rhizobium_phage	4.9e-217	69.2
WP_138388027.1\|1410623_1410836_-	hypothetical protein	NA	NA	NA	NA
WP_138387825.1\|1410855_1411218_-	hypothetical protein	NA	NA	NA	NA
WP_138387826.1\|1411651_1411906_-	hypothetical protein	NA	NA	NA	NA
WP_029874374.1\|1412206_1412767_-	acyltransferase	A0A2R8FE91	Brazilian_cedratvirus	2.7e-05	67.9
WP_138387827.1\|1412817_1414176_-	hypothetical protein	L7TMF7	Rhizobium_phage	3.1e-71	56.5
WP_138387828.1\|1414436_1416122_-	hypothetical protein	NA	NA	NA	NA
WP_138388028.1\|1416649_1417600_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_138387829.1\|1417603_1418935_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_138387830.1\|1418937_1419720_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_138387831.1\|1419722_1420472_+	FkbM family methyltransferase	A0A291AUV0	Sinorhizobium_phage	9.9e-11	27.8
WP_138387832.1\|1420488_1421352_+	FkbM family methyltransferase	G8DDJ4	Micromonas_pusilla_virus	3.2e-05	28.9
WP_138387833.1\|1421665_1422673_+	fatty acid desaturase family protein	NA	NA	NA	NA
WP_138387834.1\|1422724_1423654_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_138328652.1\|1423667_1424306_-	hypothetical protein	NA	NA	NA	NA
WP_173883551.1\|1424585_1424891_-	hypothetical protein	NA	NA	NA	NA
WP_138387836.1\|1424890_1425895_-\|tail	tail fiber domain-containing protein	A0A1L7QQ51	Brucella_phage	8.2e-53	39.4
WP_138387837.1\|1425860_1426277_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138387838.1\|1426273_1428097_-	hypothetical protein	A0A088F6U1	Sulfitobacter_phage	3.1e-42	28.4
WP_138387839.1\|1428093_1428801_-	hypothetical protein	NA	NA	NA	NA
WP_138388029.1\|1428817_1429390_-	hypothetical protein	NA	NA	NA	NA
WP_138387840.1\|1429721_1430507_-	hypothetical protein	NA	NA	NA	NA
WP_018068848.1\|1430529_1431504_-\|capsid	phage major capsid protein	Q94MS1	Myxococcus_phage	3.9e-84	51.7
WP_138387841.1\|1431520_1432594_-	hypothetical protein	NA	NA	NA	NA
WP_138387842.1\|1432629_1432941_-	hypothetical protein	NA	NA	NA	NA
WP_138387843.1\|1432953_1435083_-	hypothetical protein	X2CY04	Brucella_phage	3.2e-86	30.9
WP_138387844.1\|1435082_1436654_-\|terminase	terminase	A0A0H5ARR1	Pseudomonas_phage	3.8e-113	43.8
WP_138387845.1\|1436619_1437093_-\|terminase	terminase small subunit protein	F8TUR4	EBPR_podovirus	2.1e-30	53.8

DBSCAN-SWA_7

3241080 : 3251197

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138391146.1\|3241080_3243351_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.3e-125	40.8
WP_018243700.1\|3244100_3244322_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	7.9e-17	52.1
WP_138334974.1\|3244336_3244741_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.9e-16	43.1
WP_138391145.1\|3244719_3246924_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.9e-211	52.1
WP_138391144.1\|3247099_3248074_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.2e-138	75.1
WP_138391143.1\|3248177_3249404_+	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	5.4e-14	31.9
WP_138391142.1\|3249405_3250134_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	9.0e-41	38.8
WP_138334979.1\|3250130_3250487_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_138391141.1\|3250486_3251197_-	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	4.2e-51	49.6

DBSCAN-SWA_8

4144737 : 4158305

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011652894.1\|4144737_4145943_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.6e-39	32.6
WP_138386962.1\|4146212_4146668_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	9.0e-15	38.7
WP_138386963.1\|4146671_4147562_-	hypothetical protein	NA	NA	NA	NA
WP_138386965.1\|4148232_4150242_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.2e-88	41.7
WP_138386966.1\|4150241_4152110_+	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	6.8e-77	35.1
WP_138386967.1\|4152179_4152908_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-48	42.4
WP_138386968.1\|4152975_4154163_+	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	3.7e-36	27.8
WP_138330444.1\|4154384_4155422_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	7.1e-15	68.6
WP_138386969.1\|4155431_4155779_+	GFA family protein	NA	NA	NA	NA
WP_018074040.1\|4156247_4158305_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.7e-36	33.6

DBSCAN-SWA_9

4184893 : 4212963

Rhizobium_phage(30.0%)

protease,portal,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138386990.1\|4184893_4185289_+	hypothetical protein	A0A141GEV7	Brucella_phage	1.1e-11	37.9
WP_138386991.1\|4187247_4188501_+\|portal	phage portal protein	B0VK31	Azospirillum_phage	1.8e-89	43.4
WP_138387483.1\|4188487_4189228_+\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	4.1e-25	41.8
WP_138386992.1\|4189282_4190569_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	2.4e-49	34.7
WP_138386993.1\|4190625_4191021_+	hypothetical protein	A0A2I5ARA3	Synechococcus_phage	5.1e-06	40.2
WP_138386994.1\|4191220_4191790_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	1.2e-05	42.6
WP_138386995.1\|4191806_4192217_+	hypothetical protein	B4UTP8	Rhizobium_phage	1.6e-26	52.5
WP_173883611.1\|4192216_4192381_+	hypothetical protein	NA	NA	NA	NA
WP_138386996.1\|4192377_4192731_+\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	1.7e-13	37.3
WP_138386997.1\|4192730_4193225_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_138386998.1\|4193228_4193633_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_138386999.1\|4193680_4194115_+\|tail	phage tail protein	NA	NA	NA	NA
WP_138387000.1\|4194138_4194489_+	hypothetical protein	NA	NA	NA	NA
WP_138387001.1\|4194509_4194698_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_138387002.1\|4194694_4195081_-	YbjQ family protein	M4STD1	Rhodobacter_phage	8.4e-22	51.2
WP_138387003.1\|4195207_4198354_+\|tail	phage tail length tape measure family protein	A0A076G7H2	Sinorhizobium_phage	8.6e-56	32.3
WP_138387004.1\|4198350_4198701_+	hypothetical protein	NA	NA	NA	NA
WP_138387005.1\|4198697_4199201_+	DUF1833 family protein	A0A1B0T6D7	Thiobacimonas_phage	3.4e-15	33.9
WP_138387006.1\|4199200_4199671_+	C40 family peptidase	G8GWF9	Rhodobacter_phage	1.1e-15	36.8
WP_138387007.1\|4199585_4203227_+	hypothetical protein	G8GWG0	Rhodobacter_phage	1.0e-92	29.6
WP_138387008.1\|4203223_4204366_+	hypothetical protein	L7TMF7	Rhizobium_phage	3.5e-76	55.5
WP_138387009.1\|4204365_4204722_+	hypothetical protein	NA	NA	NA	NA
WP_138387010.1\|4204718_4205156_+	hypothetical protein	NA	NA	NA	NA
WP_138387011.1\|4205170_4205536_-	hypothetical protein	NA	NA	NA	NA
WP_130657160.1\|4205559_4205757_+	hypothetical protein	NA	NA	NA	NA
WP_138387012.1\|4205746_4206226_+	lysozyme	A0A0K1LL70	Rhodobacter_phage	5.2e-29	44.8
WP_138387013.1\|4206222_4206594_+	hypothetical protein	NA	NA	NA	NA
WP_138387014.1\|4206514_4206832_+	dehydrogenase	NA	NA	NA	NA
WP_138387015.1\|4206831_4207134_+	hypothetical protein	NA	NA	NA	NA
WP_138387016.1\|4207178_4207442_+	hypothetical protein	A0A1J0GUZ4	Halomonas_phage	1.7e-05	40.9
WP_138387484.1\|4207458_4209315_+	hypothetical protein	V9QJK2	Rhizobium_phage	3.3e-241	70.0
WP_138387019.1\|4210384_4210588_-	hypothetical protein	NA	NA	NA	NA
WP_138387020.1\|4210685_4211060_-	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	1.5e-23	47.1
WP_138387021.1\|4211056_4211281_-	hypothetical protein	NA	NA	NA	NA
WP_138387022.1\|4211497_4211785_-	hypothetical protein	A0A068C9B7	Rhizobium_phage	1.1e-45	84.0
WP_138387023.1\|4211919_4212963_+	ATP-dependent DNA ligase	A0A068CDF3	Rhizobium_phage	3.7e-157	79.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP054024

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3417

Emiliania_huxleyi_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333752.1\|530_1187_-	hypothetical protein	NA	NA	NA	NA
WP_138333750.1\|1290_3417_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.9e-36	26.4

DBSCAN-SWA_2

7562 : 11183

Ochrobactrum_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333746.1\|7562_8777_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	3.8e-20	28.8
WP_138333744.1\|8931_9975_-	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	1.4e-42	36.3
WP_026158447.1\|9971_11183_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	6.1e-119	57.6

DBSCAN-SWA_3

22473 : 23706

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138390648.1\|22473_23706_+	exonuclease SbcCD subunit D	A0A0A0RS29	Bacillus_phage	6.0e-05	24.4

DBSCAN-SWA_4

27529 : 30788

Planktothrix_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333725.1\|27529_28627_-	serine/threonine protein kinase	T2AWK4	Cannes_8_virus	4.4e-15	29.4
WP_138333723.1\|28623_29691_-	protein kinase	G9BWE0	Planktothrix_phage	1.9e-55	44.8
WP_138333721.1\|29687_30788_-	hypothetical protein	G9BWD9	Planktothrix_phage	3.6e-25	28.3

DBSCAN-SWA_5

41962 : 48747

Rhizobium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333708.1\|41962_43027_-	ATP-dependent DNA ligase	A0A068CDF3	Rhizobium_phage	2.2e-128	63.9
WP_138333706.1\|43308_44061_+	damage-inducible mutagenesis protein	NA	NA	NA	NA
WP_163925771.1\|43981_45493_+	DNA polymerase Y family protein	NA	NA	NA	NA
WP_138333704.1\|45489_48747_+	error-prone DNA polymerase	R4TMT6	Streptomyces_phage	6.8e-88	26.4

DBSCAN-SWA_6

59258 : 60011

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148666351.1\|59258_60011_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-27	36.7

DBSCAN-SWA_7

76506 : 77301

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333665.1\|76506_77301_-	alpha/beta fold hydrolase	A0A0B5A484	Mycobacterium_phage	4.7e-11	31.9

DBSCAN-SWA_8

82383 : 83868

Organic_Lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333657.1\|82383_83868_+	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	3.1e-08	27.9

DBSCAN-SWA_9

90674 : 91766

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333646.1\|90674_91766_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	8.7e-24	35.3

DBSCAN-SWA_10

96231 : 97602

Burkholderia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165586553.1\|96231_97602_-	AAA family ATPase	C7BGE8	Burkholderia_phage	5.7e-12	30.8

DBSCAN-SWA_11

101140 : 103718

Clostridium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333905.1\|101140_103123_+	AAA family ATPase	A0A1L2BY82	Clostridium_phage	7.1e-24	24.0
WP_012760580.1\|103514_103718_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	5.0e-10	55.2

DBSCAN-SWA_12

129403 : 132038

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333611.1\|129403_130288_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	2.4e-11	40.9
WP_131588278.1\|131255_132038_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.1e-15	28.1

DBSCAN-SWA_13

135321 : 136587

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333606.1\|135321_136587_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L470	Tupanvirus	2.0e-35	30.5

DBSCAN-SWA_14

147566 : 149852

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333589.1\|147566_149852_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	5.2e-79	31.2

DBSCAN-SWA_15

179045 : 189525

Staphylococcus_phage(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138386509.1\|179045_179822_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-12	26.8
WP_049810903.1\|179814_180459_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	5.5e-10	26.1
WP_138333557.1\|183422_183743_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.8e-17	46.4
WP_173863108.1\|185626_186397_-	hypothetical protein	R9U4A9	Rhizobium_phage	1.6e-27	43.9
WP_138333555.1\|187563_189525_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	6.9e-80	36.3

DBSCAN-SWA_16

195640 : 196897

Ochrobactrum_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138335054.1\|195640_196897_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	9.0e-65	38.0

DBSCAN-SWA_17

201939 : 203145

Micromonas_sp._RCC1109_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333890.1\|201939_203145_-	hypothetical protein	E5EQ70	Micromonas_sp._RCC1109_virus	1.6e-18	25.3

DBSCAN-SWA_18

218587 : 221708

Burkholderia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333876.1\|218587_219691_-	acyltransferase	A9YX16	Burkholderia_phage	5.0e-11	28.1
WP_017958630.1\|219890_220670_-	ABC transporter permease	NA	NA	NA	NA
WP_138333928.1\|220673_221708_-	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	2.6e-25	38.1

DBSCAN-SWA_19

229165 : 230992

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333863.1\|229165_230992_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	5.1e-109	40.0

DBSCAN-SWA_20

237214 : 237802

Bordetella_phage(100.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080635821.1\|237214_237802_-\|tail	tail fiber protein	A0A291LA10	Bordetella_phage	2.0e-14	38.5

DBSCAN-SWA_21

248941 : 249196

Pseudomonas_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333844.1\|248941_249196_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	3.6e-05	52.3

DBSCAN-SWA_22

261134 : 261911

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333821.1\|261134_261911_+	winged helix-turn-helix domain-containing protein	W8CYM9	Bacillus_phage	4.5e-14	28.6

DBSCAN-SWA_23

265935 : 267999

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138390652.1\|265935_267999_-	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	2.2e-07	23.4

DBSCAN-SWA_24

276501 : 277251

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173863107.1\|276501_277251_-	ParA family protein	Q8H9K9	Vibrio_phage	5.1e-07	27.5

DBSCAN-SWA_25

292792 : 293968

Geobacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333780.1\|292792_293968_-	transglycosylase SLT domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	1.3e-20	45.5

DBSCAN-SWA_26

297156 : 298227

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333776.1\|297156_298227_-	lytic transglycosylase domain-containing protein	A0A2D1GLK8	Escherichia_phage	6.8e-05	34.5

DBSCAN-SWA_27

305993 : 312694

Bordetella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138333761.1\|305993_306935_-	DUF2493 domain-containing protein	A0A291L9X7	Bordetella_phage	1.5e-19	41.4
WP_138333759.1\|307266_308304_-	toprim domain-containing protein	A0A0U4B0G9	Pseudomonas_phage	5.1e-13	44.2
WP_138333757.1\|308317_312694_-	strawberry notch family protein	A0A076FMQ0	Aureococcus_anophage	6.0e-15	23.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054021

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP054024

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection