CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040552	Burkholderia pseudomallei strain VB2514 chromosome 2, complete sequence	0 crisprs	WYL,DEDDh,csa3	0	0	9	0
NZ_CP040551	Burkholderia pseudomallei strain VB2514 chromosome 1, complete sequence	3 crisprs	csa3,cas3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13496 : 24439

Agrobacterium_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196461.1\|13496_15797_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1
WP_004194131.1\|15793_16108_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196460.1\|16640_16844_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_045597308.1\|16973_18578_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_004189626.1\|18590_18773_+	hypothetical protein	NA	NA	NA	NA
WP_004189552.1\|18745_20005_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189780.1\|20272_20851_+	pseudouridine synthase	NA	NA	NA	NA
WP_071810810.1\|21113_21332_+	hypothetical protein	NA	NA	NA	NA
WP_004185496.1\|21523_22033_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_004197486.1\|22324_24439_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7

DBSCAN-SWA_2

613231 : 646471

Stx2-converting_phage(33.33%)

holin,integrase,transposase

attL 633445:633462|attR 637922:637939

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004543876.1\|613231_614341_+	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	1.2e-124	58.0
WP_151270706.1\|614778_616302_-	hypothetical protein	NA	NA	NA	NA
WP_111994465.1\|616906_617179_+\|transposase	transposase	NA	NA	NA	NA
WP_076880693.1\|617292_617922_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	4.9e-27	38.1
WP_122835926.1\|617929_619492_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-149	53.7
WP_004529308.1\|619521_619869_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.6e-41	73.8
WP_004555373.1\|619865_620273_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	4.9e-12	36.5
WP_151270707.1\|620249_621008_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.8e-50	49.5
WP_041189647.1\|621500_622616_-	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA
WP_151270708.1\|622618_624454_-	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	5.8e-28	33.8
WP_080275197.1\|624524_625253_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_151270709.1\|625249_628336_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	6.7e-53	27.9
WP_151270710.1\|628345_629581_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_151270711.1\|629571_631974_-	type I restriction endonuclease subunit M	A0A2H4PQP4	Staphylococcus_phage	3.6e-70	36.8
WP_080275211.1\|632520_632763_+	hypothetical protein	NA	NA	NA	NA
WP_038745135.1\|632945_633140_-	hypothetical protein	NA	NA	NA	NA
WP_038745138.1\|633340_634159_-	hypothetical protein	NA	NA	NA	NA
633445:633462	attL	NA	NA	NA	NA
WP_151270712.1\|634155_635439_-\|integrase	integrase family protein	NA	NA	NA	NA
WP_009951766.1\|635712_636615_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_009962790.1\|636901_637120_-	hypothetical protein	NA	NA	NA	NA
WP_151270713.1\|637607_640337_+	DUF1929 domain-containing protein	NA	NA	NA	NA
637922:637939	attR	NA	NA	NA	NA
WP_038719135.1\|640364_640958_+	SCO family protein	NA	NA	NA	NA
WP_009972751.1\|641333_642167_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004522986.1\|642163_642466_-	AzlD family protein	NA	NA	NA	NA
WP_004522987.1\|642462_643191_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_004522988.1\|643315_643774_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_151270714.1\|644011_644308_+	hypothetical protein	NA	NA	NA	NA
WP_038765470.1\|644353_646471_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA

DBSCAN-SWA_3

1062420 : 1073627

Pseudomonas_phage(20.0%)

integrase

attL 1057966:1058015|attR 1074771:1074820

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1057966:1058015	attL	NA	NA	NA	NA
WP_011852346.1\|1062420_1063347_+	hypothetical protein	A0A077JGB2	Xanthomonas_phage	1.1e-14	29.2
WP_038726517.1\|1064702_1064936_-	hypothetical protein	NA	NA	NA	NA
WP_038799540.1\|1065445_1066225_+	hypothetical protein	A0A1W5LU59	Ralstonia_phage	2.1e-35	41.5
WP_131201518.1\|1066324_1067179_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	4.5e-60	46.4
WP_131201520.1\|1067543_1067876_+	helix-turn-helix domain-containing protein	A0A088CD40	Shigella_phage	1.6e-16	52.1
WP_131201521.1\|1068055_1068289_+	hypothetical protein	B3FJW3	Pseudomonas_phage	2.5e-05	38.2
WP_131201532.1\|1068778_1069321_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.7e-50	57.5
WP_151271493.1\|1069578_1070031_+	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	6.8e-31	57.9
WP_151271492.1\|1070030_1071110_+	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	7.8e-158	97.2
WP_131201523.1\|1071577_1071811_+	hypothetical protein	NA	NA	NA	NA
WP_131201524.1\|1071985_1072399_+	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	1.0e-33	49.2
WP_059645399.1\|1072403_1073627_+	multidrug DMT transporter	A7XXH6	Thermus_virus	6.8e-25	27.1
1074771:1074820	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1316101 : 1334455

Pseudomonas_phage(25.0%)

integrase,protease,plate

attL 1308704:1308720|attR 1326823:1326839

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1308704:1308720	attL	NA	NA	NA	NA
WP_151270840.1\|1316101_1316617_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.9e-21	51.0
WP_151270841.1\|1316852_1319453_+	type I restriction endonuclease subunit M	A0A142K7G3	Mycobacterium_phage	7.2e-234	51.1
WP_076802946.1\|1319462_1319723_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.1e-16	68.1
WP_004535005.1\|1321258_1322329_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_009932052.1\|1322335_1323136_-	hypothetical protein	NA	NA	NA	NA
WP_004539222.1\|1323569_1323908_+	DUF4102 domain-containing protein	Q8W6M6	Sinorhizobium_phage	2.4e-17	49.0
WP_038776434.1\|1324402_1325188_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004521949.1\|1325184_1326531_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521950.1\|1326639_1327254_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
1326823:1326839	attR	NA	NA	NA	NA
WP_045597230.1\|1327629_1328295_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521952.1\|1328331_1328850_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004521953.1\|1328866_1330357_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004527837.1\|1330429_1330933_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011205263.1\|1330960_1331473_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_011205262.1\|1331564_1333391_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009971111.1\|1333354_1334455_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_5

1659125 : 1668382

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004194034.1\|1659125_1661078_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2
WP_004533593.1\|1661344_1662475_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.8e-22	27.6
WP_151270910.1\|1662508_1664527_+	chloride transporter	S4VT78	Pandoravirus	4.1e-51	34.2
WP_004194137.1\|1664710_1665526_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_151270911.1\|1665590_1666274_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194373.1\|1666270_1666798_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_014917872.1\|1666834_1668382_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2

DBSCAN-SWA_6

2035811 : 2044637

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076849576.1\|2035811_2037212_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.4e-79	38.5
WP_004522359.1\|2037180_2038167_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	6.7e-15	26.8
WP_004190173.1\|2038225_2039218_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_004189725.1\|2039289_2039607_+	competence protein ComE	NA	NA	NA	NA
WP_004550116.1\|2039941_2040844_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	3.3e-53	39.9
WP_076884762.1\|2041070_2042405_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004522362.1\|2042532_2043456_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	36.2
WP_151271005.1\|2043531_2043717_+	hypothetical protein	NA	NA	NA	NA
WP_063831528.1\|2043794_2044637_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	7.2e-18	27.2

DBSCAN-SWA_7

2120087 : 2177620

Burkholderia_virus(30.3%)

protease,holin,integrase,tail,terminase

attL 2125508:2125525|attR 2143464:2143481

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011325758.1\|2120087_2121545_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	2.7e-20	27.7
WP_004191739.1\|2121541_2121796_+	glutaredoxin family protein	NA	NA	NA	NA
WP_004193305.1\|2122036_2123830_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	2.1e-22	23.5
WP_004193513.1\|2123845_2124739_+	signal peptidase I	NA	NA	NA	NA
WP_004544100.1\|2124889_2126293_+	ribonuclease III	G8DDA3	Micromonas_pusilla_virus	4.9e-19	30.3
2125508:2125525	attL	NA	NA	NA	NA
WP_004191678.1\|2126362_2127262_+	GTPase Era	NA	NA	NA	NA
WP_151271020.1\|2127248_2128109_+	DNA repair protein RecO	NA	NA	NA	NA
WP_004524619.1\|2128105_2128879_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_004191194.1\|2128884_2129316_+	holo-ACP synthase	NA	NA	NA	NA
WP_004539664.1\|2129343_2130372_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_004192300.1\|2130485_2131883_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004193484.1\|2132153_2132711_-	elongation factor P	NA	NA	NA	NA
WP_151271021.1\|2132900_2134121_-	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA
WP_151271022.1\|2134338_2136588_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_004192722.1\|2136715_2137309_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_151271023.1\|2138073_2139273_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	3.5e-18	26.5
WP_151271024.1\|2139642_2139903_-	hypothetical protein	NA	NA	NA	NA
WP_151271025.1\|2139899_2140304_-	hypothetical protein	X5I2N5	Pseudomonas_phage	2.1e-31	67.0
WP_151271026.1\|2140264_2141032_-	hypothetical protein	NA	NA	NA	NA
WP_151271027.1\|2141028_2141298_-	hypothetical protein	NA	NA	NA	NA
WP_151271028.1\|2141294_2141480_-	hypothetical protein	NA	NA	NA	NA
WP_151271029.1\|2141476_2142949_-	pyridoxal phosphate biosynthetic protein PdxJ	A0A2I7QW51	Vibrio_phage	1.2e-07	27.4
WP_151271030.1\|2142948_2143395_-	ACP synthase	NA	NA	NA	NA
WP_151271031.1\|2143391_2143751_-	beta-hexosaminidase	NA	NA	NA	NA
2143464:2143481	attR	NA	NA	NA	NA
WP_151271032.1\|2144127_2144343_-	hypothetical protein	NA	NA	NA	NA
WP_151271033.1\|2144908_2145517_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_151271034.1\|2145529_2145736_+	hypothetical protein	NA	NA	NA	NA
WP_080309578.1\|2145882_2146335_+	hypothetical protein	C7BGG0	Burkholderia_phage	1.6e-19	41.4
WP_004540057.1\|2146343_2146736_+	hypothetical protein	NA	NA	NA	NA
WP_151271035.1\|2146890_2149629_+	virulence protein E	A0A2D1GN57	Marinobacter_phage	2.5e-91	43.1
WP_151271036.1\|2149900_2150698_+	hypothetical protein	NA	NA	NA	NA
WP_151271037.1\|2150916_2151675_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	2.5e-33	42.3
WP_020850831.1\|2151856_2152486_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	1.6e-06	32.3
WP_151271038.1\|2152424_2154503_+\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	2.0e-101	34.1
WP_151271039.1\|2154505_2154712_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	8.5e-05	46.8
WP_151271511.1\|2156285_2158304_+	peptidase U35	A0A076G7Y9	Pseudoalteromonas_phage	5.3e-67	29.3
WP_004540064.1\|2158369_2158705_+	DUF2190 family protein	NA	NA	NA	NA
WP_151271040.1\|2158707_2159004_+	hypothetical protein	NA	NA	NA	NA
WP_004539916.1\|2159000_2159426_+	hypothetical protein	NA	NA	NA	NA
WP_151271512.1\|2159474_2160395_+	hypothetical protein	G8CLB2	Synechococcus_phage	3.6e-47	36.8
WP_151271041.1\|2160453_2160792_+	hypothetical protein	F4YCS5	Synechococcus_phage	1.3e-07	29.1
WP_151271042.1\|2160863_2161169_+	hypothetical protein	A0A0H5ARS5	Pseudomonas_phage	1.3e-09	44.3
WP_151271513.1\|2161213_2163994_+\|tail	tail tape measure protein	C4ML16	Xanthomonas_virus	3.7e-18	26.5
WP_076847725.1\|2163983_2164322_+\|tail	phage tail protein	K7PHL4	Enterobacterial_phage	2.4e-17	42.3
WP_151271043.1\|2164323_2165727_+\|tail	tail fiber domain-containing protein	A4JX12	Burkholderia_virus	6.9e-199	77.1
WP_151271044.1\|2165723_2166416_+\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	1.6e-79	63.7
WP_151271045.1\|2166420_2167152_+	peptidase P60	Q8W6T2	Burkholderia_virus	1.3e-63	50.4
WP_151271046.1\|2167148_2167730_+\|tail	tail assembly protein	Q3HQU4	Burkholderia_phage	1.2e-51	55.7
WP_151271047.1\|2167726_2171098_+	host specificity protein J	A4JX16	Burkholderia_virus	1.0e-301	48.2
WP_020850420.1\|2171097_2171403_+	hypothetical protein	Q8W6S9	Burkholderia_virus	1.6e-39	73.5
WP_151271048.1\|2171402_2172140_+	hypothetical protein	Q8W6S8	Burkholderia_virus	5.2e-97	66.4
WP_151271049.1\|2172197_2172491_+\|holin	holin	C7BGD7	Burkholderia_phage	4.1e-37	90.2
WP_151271050.1\|2172483_2172903_+	lysozyme	A0A1Q1PW74	Pseudoalteromonas_phage	1.1e-22	43.9
WP_151271051.1\|2172899_2173394_+	DUF2514 family protein	C7BGD9	Burkholderia_phage	9.1e-37	58.4
WP_059670899.1\|2173562_2174351_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	7.2e-145	90.8
WP_151271052.1\|2174461_2175349_+	hypothetical protein	Q8W6S3	Burkholderia_virus	2.7e-92	62.6
WP_151271053.1\|2175401_2175911_-	hypothetical protein	Q8W6R9	Burkholderia_virus	8.2e-25	40.4
WP_151271054.1\|2176111_2176768_+	SOS response-associated peptidase	Q8W6R8	Burkholderia_virus	7.5e-79	61.1
WP_059468969.1\|2177097_2177340_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_151271055.1\|2177326_2177620_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.6e-17	55.8

DBSCAN-SWA_8

2548917 : 2553398

Burkholderia_virus(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196630.1\|2548917_2549181_+	hypothetical protein	Q8W6S4	Burkholderia_virus	2.2e-26	85.5
WP_071897863.1\|2549164_2549350_+	hypothetical protein	Q8W6S4	Burkholderia_virus	4.4e-21	85.2
WP_076804729.1\|2549370_2549682_-	hypothetical protein	A4PE26	Ralstonia_virus	4.5e-26	60.2
WP_038763587.1\|2550102_2550705_-	hypothetical protein	NA	NA	NA	NA
WP_080381152.1\|2551046_2551553_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	40.1
WP_024430357.1\|2551549_2551972_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	4.9e-15	43.5
WP_004557051.1\|2552252_2552648_-	hypothetical protein	NA	NA	NA	NA
WP_004531416.1\|2552901_2553129_+	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_011851785.1\|2553164_2553398_-	hypothetical protein	A4PE26	Ralstonia_virus	2.1e-12	59.1

DBSCAN-SWA_9

3762269 : 3831129

uncultured_Caudovirales_phage(33.33%)

head,protease,capsid,holin,portal,plate,integrase,tail,transposase,terminase

attL 3760068:3760090|attR 3803311:3803333

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3760068:3760090	attL	NA	NA	NA	NA
WP_151271398.1\|3762269_3764429_-	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	5.4e-25	28.1
WP_151271399.1\|3764432_3767192_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.2e-89	34.3
WP_151271400.1\|3767535_3768327_-	DNA adenine methylase	Q8W6S4	Burkholderia_virus	2.6e-142	90.1
WP_151271401.1\|3768607_3769102_-	DUF2514 family protein	C7BGD9	Burkholderia_phage	4.6e-41	62.7
WP_151271402.1\|3769098_3769593_-	glycoside hydrolase	Q6J1Q5	Burkholderia_virus	1.7e-75	85.4
WP_048985898.1\|3769595_3769880_-\|holin	holin	C7BGD7	Burkholderia_phage	3.8e-40	93.6
WP_151271403.1\|3769956_3771006_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	9.4e-84	47.9
WP_151271404.1\|3771015_3771222_-\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.3e-15	59.7
WP_151271405.1\|3771196_3772075_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.8e-35	37.9
WP_006497094.1\|3774605_3774908_-\|tail	phage tail assembly protein	A0A1B2LRV6	Wolbachia_phage	3.9e-06	37.7
WP_006497095.1\|3775005_3775509_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.1e-42	53.1
WP_151271406.1\|3775519_3776689_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	2.3e-155	71.3
WP_006497097.1\|3776773_3777553_-\|tail	tail assembly chaperone	E5E3Q6	Burkholderia_phage	7.3e-57	56.5
WP_151271407.1\|3777568_3779587_-\|tail	tail fiber protein	A4JWS9	Burkholderia_virus	9.9e-106	48.9
WP_151271408.1\|3779574_3780153_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	4.3e-30	44.7
WP_080330796.1\|3780142_3781039_-\|plate	baseplate J protein	A0A1J0I2M3	Salmonella_phage	1.4e-48	41.1
WP_006497102.1\|3781035_3781371_-	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.5e-22	48.1
WP_006497103.1\|3781370_3781571_-	hypothetical protein	NA	NA	NA	NA
WP_151271409.1\|3781629_3782310_-\|plate	phage baseplate assembly protein V	E5E3V6	Burkholderia_phage	9.9e-26	33.3
WP_006497106.1\|3782313_3782838_-	hypothetical protein	Q75QM3	Wolbachia_phage	8.4e-25	42.0
WP_151271410.1\|3782827_3783358_-\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	7.0e-11	31.0
WP_124649301.1\|3783360_3783648_-	hypothetical protein	NA	NA	NA	NA
WP_151271411.1\|3783649_3784645_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	5.8e-115	61.2
WP_151271412.1\|3784718_3785063_-\|head	head decoration protein	NA	NA	NA	NA
WP_151271413.1\|3785093_3786161_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	8.2e-51	37.6
WP_151271414.1\|3786157_3787651_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	1.3e-134	51.1
WP_006497114.1\|3787647_3787854_-	hypothetical protein	NA	NA	NA	NA
WP_151271415.1\|3787867_3789979_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	2.2e-180	54.1
WP_151271416.1\|3790564_3790804_+	hypothetical protein	NA	NA	NA	NA
WP_151271417.1\|3791430_3792018_-	hypothetical protein	NA	NA	NA	NA
WP_151271418.1\|3792233_3794741_-	virulence protein E	A0A2D1GN57	Marinobacter_phage	3.7e-94	40.4
WP_151271419.1\|3795001_3795385_-	hypothetical protein	NA	NA	NA	NA
WP_151271420.1\|3795371_3795914_-	hypothetical protein	C7BGG0	Burkholderia_phage	5.8e-29	46.8
WP_151271543.1\|3795999_3796191_-	hypothetical protein	NA	NA	NA	NA
WP_151271544.1\|3796241_3796850_+	helix-turn-helix transcriptional regulator	G9L6A6	Escherichia_phage	7.3e-12	41.3
WP_151271421.1\|3796794_3797259_+	hypothetical protein	NA	NA	NA	NA
WP_151271422.1\|3797388_3797607_+	hypothetical protein	NA	NA	NA	NA
WP_151271423.1\|3797655_3798018_+	beta-hexosaminidase	NA	NA	NA	NA
WP_151271424.1\|3798017_3799634_+	pyridoxal phosphate biosynthetic protein PdxJ	NA	NA	NA	NA
WP_151271545.1\|3799735_3800092_+	hypothetical protein	NA	NA	NA	NA
WP_151271425.1\|3800088_3800349_+	hypothetical protein	NA	NA	NA	NA
WP_085539461.1\|3800345_3800576_+	hypothetical protein	NA	NA	NA	NA
WP_151271426.1\|3800683_3801733_+	hypothetical protein	NA	NA	NA	NA
WP_151271427.1\|3801766_3801967_+	hypothetical protein	NA	NA	NA	NA
WP_151271428.1\|3802160_3803264_-\|integrase	site-specific integrase	A0A2D1GMX8	Marinobacter_phage	3.5e-44	31.3
WP_071897713.1\|3803718_3804123_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	4.5e-10	48.2
3803311:3803333	attR	NA	NA	NA	NA
WP_151271429.1\|3804056_3805814_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_151271546.1\|3805838_3806045_-	hypothetical protein	NA	NA	NA	NA
WP_151271430.1\|3806075_3806366_-	hypothetical protein	NA	NA	NA	NA
WP_004193468.1\|3817353_3817830_-	hypothetical protein	NA	NA	NA	NA
WP_076804738.1\|3817765_3817945_+	hypothetical protein	NA	NA	NA	NA
WP_151271431.1\|3817928_3818270_+	hypothetical protein	NA	NA	NA	NA
WP_004200110.1\|3818286_3818511_+	hypothetical protein	NA	NA	NA	NA
WP_044355960.1\|3818759_3819896_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_004522511.1\|3819993_3820533_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_004192840.1\|3820705_3821086_+	lipoprotein	NA	NA	NA	NA
WP_009982345.1\|3821298_3821541_-	hypothetical protein	NA	NA	NA	NA
WP_076811751.1\|3821692_3822103_-	hypothetical protein	NA	NA	NA	NA
WP_004192184.1\|3822119_3822500_+	hypothetical protein	NA	NA	NA	NA
WP_102811502.1\|3822699_3822924_-	hypothetical protein	NA	NA	NA	NA
WP_004200095.1\|3822962_3823148_-	hypothetical protein	NA	NA	NA	NA
WP_004266384.1\|3823073_3823586_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_004534176.1\|3823709_3825083_+	MFS transporter	NA	NA	NA	NA
WP_004550754.1\|3825225_3825483_-	hypothetical protein	NA	NA	NA	NA
WP_004191641.1\|3825852_3826464_+	membrane protein	NA	NA	NA	NA
WP_004534082.1\|3826636_3827239_-	AAA family ATPase	A0A219VHB7	Ochrobactrum_phage	3.3e-25	62.8
WP_004192381.1\|3827231_3828650_-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA
WP_151271432.1\|3828782_3828980_-	hypothetical protein	NA	NA	NA	NA
WP_151271433.1\|3829268_3829820_+	hypothetical protein	NA	NA	NA	NA
WP_151271434.1\|3829816_3830320_+	hypothetical protein	NA	NA	NA	NA
WP_151271435.1\|3830376_3830538_+	hypothetical protein	NA	NA	NA	NA
WP_137985156.1\|3830799_3831129_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040551

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040551_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040551_1

787821-787913

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040551_1

>merge|NZ_CP040551|1|787821-787913|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NZ_CP040551|1|1|787821-787913|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040551.1\|WP_004524990.1\|780030_781596_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP040551.1\|WP_009972310.1\|782703_783207_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_050020039.1\|794025_795456_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP040551.1\|WP_004188221.1\|789857_790313_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP040551.1\|WP_004198321.1\|783283_784309_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP040551.1\|WP_151270006.1\|776571_777696_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP040551.1\|WP_004187955.1\|769362_769527_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_004524989.1\|782136_782646_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_151270007.1\|779780_779939_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_004555134.1\|788376_789078_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP040551.1\|WP_151270010.1\|795452_796631_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP040551.1\|WP_004529174.1\|777845_779681_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP040551.1\|WP_004187193.1\|788131_788380_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP040551.1\|WP_004524995.1\|772243_773317_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP040551.1\|WP_151270009.1\|791861_792119_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_080295569.1\|798398_798674_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_004549747.1\|789074_789383_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP040551.1\|WP_151270008.1\|789375_789861_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP040551.1\|WP_151270520.1\|797354_798296_-\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP040551.1\|WP_004188537.1\|770720_772247_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103

Protein	Function_ID	Function_description	E-value
NZ_CP040551.1\|WP_004524990.1\|780030_781596_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP040551.1\|WP_004188537.1\|770720_772247_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	7.30998e-99
NZ_CP040551.1\|WP_050020039.1\|794025_795456_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP040551.1\|WP_004188221.1\|789857_790313_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP040551.1\|WP_004198321.1\|783283_784309_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP040551.1\|WP_151270006.1\|776571_777696_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.78505e-25
NZ_CP040551.1\|WP_151270008.1\|789375_789861_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	5.14398e-17
NZ_CP040551.1\|WP_004187193.1\|788131_788380_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP040551.1\|WP_004555134.1\|788376_789078_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	4.76435e-122
NZ_CP040551.1\|WP_151270010.1\|795452_796631_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP040551.1\|WP_004529174.1\|777845_779681_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.08999e-132
NZ_CP040551.1\|WP_004524995.1\|772243_773317_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.83012e-39
NZ_CP040551.1\|WP_004549747.1\|789074_789383_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	3.91378e-10
NZ_CP040551.1\|WP_151270520.1\|797354_798296_-\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	3.30641e-106

>NZ_CP040551.1|WP_004198321.1|783283_784309_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGATFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP040551.1|WP_009972310.1|782703_783207_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_CP040551.1|WP_004524989.1|782136_782646_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP040551.1|WP_004524990.1|780030_781596_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP040551.1|WP_151270007.1|779780_779939_+|hypothetical-protein
MRVRRSHGAGIRLGFDKPSGAHSSTHDGWVQTDIAMRLLQISLMPDQALANE
>NZ_CP040551.1|WP_004529174.1|777845_779681_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRAKTAAARVQR
>NZ_CP040551.1|WP_151270006.1|776571_777696_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMNAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRKFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP040551.1|WP_004524995.1|772243_773317_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKSDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVPQ
>NZ_CP040551.1|WP_004188537.1|770720_772247_+|efflux-transporter-outer-membrane-subunit
MTMRNDARHDERHQRRRGIARRAARHAAALALCAAVSGCLSLAPDYARKPPPVPAAYPAYPGEPGAGSRTLEQLGWRAYFVDPRLQALIETALANNRDLRIAAQRVEQARAAYGIRRADQYPTIAANAAYLRFREPGGLLLPSPIIGELYSASLSEVQWEIDFWGRVRSLKAAALDTFLASDASRRAVTVSLIGQVADAYLALCAYDERLALTNETIASRRDSLRIFRRRYEEGAISKLDLTQSEILLQQAQTLGSQLQQARDVQQHALDLLVGTNAAARTPASLDDASIAPDLAPGLPSELLANRPDVVAAEYQLRAAHANIGAARAAFFPRIALTSSIGTGSTELHNLFASGTAAWNFIPNLSVPIFDAGRNIGNLKLANARRDEALAQYEKTIQTAFRDVADALAARHWLADQVRIAQETLATQAERARLAKLRYDSGAARFLEVLDAQRDLLNAQQQLVQTRRALLASRVALYAALGGRLDEPARDGAAPRPSPEPSAKQGPLS
>NZ_CP040551.1|WP_004187955.1|769362_769527_-|hypothetical-protein
MTEVNFSGAERRIMNPCFRHPERFVATASESGARSGFPKRGETPQSRAAETTST
>NZ_CP040551.1|WP_004187193.1|788131_788380_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP040551.1|WP_004555134.1|788376_789078_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVAAVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP040551.1|WP_004549747.1|789074_789383_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFAAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP040551.1|WP_151270008.1|789375_789861_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARATRGTPAPAPRRMTHAAPRGSTRRRLARQRGGAAHPAARAAEPAAPKPAADRVERAAHTAAARARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_CP040551.1|WP_004188221.1|789857_790313_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP040551.1|WP_151270009.1|791861_792119_+|hypothetical-protein
MLFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NZ_CP040551.1|WP_050020039.1|794025_795456_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP040551.1|WP_151270010.1|795452_796631_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFSLPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFVFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA
>NZ_CP040551.1|WP_151270520.1|797354_798296_-|1-phosphofructokinase-family-hexose-kinase
MPEIVTLTPNPAIDVATCVERVTDTRKLRCGPARRDPGGGGINVARVLTRLGADCSAVYLAGGGTGLALRGLLADEGVRAHGIDIAGETRENFSVLETSTGREFRFVLPGPALAAHESPRCVEALGRLADASRYLVMSGSLPPGMPDDCYARLARRARARGVRTVVDTSGPALAAALDAGVYLVKPSLGELRALTGLPLEDDGARLAAARAIVAGGRVQIVALTLGDAGALVVSRDDAVRLPGVKVAVRSAIGAGDSFVAGLVAALNRGANVADAARHALAAASASLLSTGTALGTKEDIARIYRELPGTIDA
>NZ_CP040551.1|WP_080295569.1|798398_798674_+|hypothetical-protein
MLAFDSASNHQHRRRSTAACCLLLAACCLLLAACCLLLAACRLPLAACRLPLAACRLPLAACRLPLAASIEHRARRASAAHIASRAYATLR

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Crispr_ID: NZ_CP040551_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040551_2

1212892-1213037

Orphan

Consensus_repeat	Method
GCAGAGACGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040551_2

>merge|NZ_CP040551|2|1212892-1213037|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGACTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCG

>NZ_CP040551|2|1|1212892-1213037|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGACTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	ACCCGATCA
TCGGGATGCTCGATCGCCG

>NZ_CP040551|2|2|1212942-1213027|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040551.1\|WP_151270527.1\|1206763_1207195_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_151270110.1\|1218824_1219229_+\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|367272
NZ_CP040551.1\|WP_004200700.1\|1204240_1205356_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP040551.1\|WP_151270108.1\|1214979_1215162_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_151270106.1\|1212217_1212601_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_151270112.1\|1223561_1224215_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP040551.1\|WP_004523291.1\|1205653_1206589_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP040551.1\|WP_151270528.1\|1220354_1222187_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|273284
NZ_CP040551.1\|WP_151270104.1\|1207278_1207482_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_151270111.1\|1219326_1220358_+\|nitroreductase	unknown	unknown	gnl\|CDD\|236122
NZ_CP040551.1\|WP_076812590.1\|1224796_1225111_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_009927403.1\|1205416_1205527_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_151270109.1\|1215138_1216923_+\|ribonucleotide-reductase-like-protein	unknown	unknown	gnl\|CDD\|180772
NZ_CP040551.1\|WP_004187137.1\|1222658_1223108_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NZ_CP040551.1\|WP_004187469.1\|1211842_1212238_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NZ_CP040551.1\|WP_004529498.1\|1224282_1224717_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP040551.1\|WP_151270105.1\|1209436_1211710_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP040551.1\|WP_151270107.1\|1213374_1213560_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_038793455.1\|1207494_1209153_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP040551.1\|WP_004196898.1\|1203498_1203939_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863

Protein	Function_ID	Function_description	E-value
NZ_CP040551.1\|WP_151270110.1\|1218824_1219229_+\|quinone-oxidoreductase	gnl\|CDD\|367272	pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein. The N-terminal half of this protein corresponds to the capsid protein.	0.00834536
NZ_CP040551.1\|WP_004200700.1\|1204240_1205356_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NZ_CP040551.1\|WP_151270112.1\|1223561_1224215_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	2.3313e-20
NZ_CP040551.1\|WP_004523291.1\|1205653_1206589_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.07132e-61
NZ_CP040551.1\|WP_151270528.1\|1220354_1222187_+\|STAS-domain-containing-protein	gnl\|CDD\|273284	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1. The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out). [Transport and binding proteins, Anions].	2.78179e-107
NZ_CP040551.1\|WP_004187137.1\|1222658_1223108_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.39507e-50
NZ_CP040551.1\|WP_004187469.1\|1211842_1212238_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NZ_CP040551.1\|WP_004529498.1\|1224282_1224717_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NZ_CP040551.1\|WP_151270105.1\|1209436_1211710_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	2.66424e-55
NZ_CP040551.1\|WP_151270109.1\|1215138_1216923_+\|ribonucleotide-reductase-like-protein	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NZ_CP040551.1\|WP_151270111.1\|1219326_1220358_+\|nitroreductase	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	2.62883e-30
NZ_CP040551.1\|WP_038793455.1\|1207494_1209153_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.99057e-37
NZ_CP040551.1\|WP_004196898.1\|1203498_1203939_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	3.1145e-25

>NZ_CP040551.1|WP_151270106.1|1212217_1212601_+|hypothetical-protein
MLVERCHRVLRVCVAASARRAMRGDGRPVRTGLSAVRVPLACRLPVVCLSFVWRVRGGSAARPGFSASPRTAPSVRTHERMARRPAAGADPPAAPRSAAQHGTVRHGTARCGAVRTAAECAARRNAR
>NZ_CP040551.1|WP_004187469.1|1211842_1212238_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NZ_CP040551.1|WP_151270105.1|1209436_1211710_-|pyridine-nucleotide-disulfide-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATLLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDMLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGITPNCGWLDGSGLALGDGVEVDAFLQTADPNVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKMKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NZ_CP040551.1|WP_038793455.1|1207494_1209153_+|GMC-family-oxidoreductase
MKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETLVAA
>NZ_CP040551.1|WP_151270104.1|1207278_1207482_-|hypothetical-protein
MIVRTGPRARRCTNGSSPCFPAGRRCAMRRTACAAWSRAFPRLFAHPARDGSRRARRRDPRPLTRTP
>NZ_CP040551.1|WP_151270527.1|1206763_1207195_+|hypothetical-protein
MHQERRKRNADRHGTHPYDADSRAAPREAPRFEHVPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQAPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NZ_CP040551.1|WP_004523291.1|1205653_1206589_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCDEHAPA
>NZ_CP040551.1|WP_009927403.1|1205416_1205527_-|hypothetical-protein
MQSTGSFDISARRMIEFRSVNKSNHDCPLEKSSGLL
>NZ_CP040551.1|WP_004200700.1|1204240_1205356_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NZ_CP040551.1|WP_004196898.1|1203498_1203939_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NZ_CP040551.1|WP_151270107.1|1213374_1213560_-|hypothetical-protein
MAHAACAARATVGGPLARGRRPSSVSGTETPAVAKRGSDGGGRAFAATQRIVSDAHRIGTA
>NZ_CP040551.1|WP_151270108.1|1214979_1215162_-|hypothetical-protein
MVVHVADHADERIGVGNGARAFVDRPQAACANRAVRRAARRAVRRAVRRAARQATWRVVR
>NZ_CP040551.1|WP_151270109.1|1215138_1216923_+|ribonucleotide-reductase-like-protein
MIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRDMAPPRDAPGGALPGADGAWTYARVPARHVWREIVSVARDGAGPGLVFVDAIDAADRLRGRERIDATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFDAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGLPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRLVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NZ_CP040551.1|WP_151270110.1|1218824_1219229_+|quinone-oxidoreductase
MRNRCRDTSRQRGPRRRHRRPFARGRLAAPLRSLAHSLSATPCHAAPHRNGNGDGSDDRTPPPAGSARAARRADSRANRTRSRAHARRAGEIRRSRGPRRNGRRPRERRPNARSTHRPSAVDLGQSAPAGRSID
>NZ_CP040551.1|WP_151270111.1|1219326_1220358_+|nitroreductase
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVF
>NZ_CP040551.1|WP_151270528.1|1220354_1222187_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGNIVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEADAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NZ_CP040551.1|WP_004187137.1|1222658_1223108_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKEVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NZ_CP040551.1|WP_151270112.1|1223561_1224215_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDVYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRRLAEALSLNEDELPILAQTVGKPAAHP
>NZ_CP040551.1|WP_004529498.1|1224282_1224717_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NZ_CP040551.1|WP_076812590.1|1224796_1225111_+|hypothetical-protein
MIDDADRLDVGYLQRSGTSTPGIDVSQSAAIGGNRAAGGGNRAAITPRSGRRPHGRPRGRSGPPSPPNRRRRLGGGRSIGEHAAFPRRKPESADGGRSGRRTGE

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Crispr_ID: NZ_CP040551_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040551_3

2845632-2845802

Orphan

Consensus_repeat	Method
GGCGGGCCGGCCGCCGCGCGGGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040551_3

>merge|NZ_CP040551|3|2845632-2845802|PILER-CR
GGCCGCTCGGCCGCCGCGCGGGCGCGTGTTCCGCGTGGCGGCCTCCGCCGTGCCGGCGCGGCGGCCGTGCGGAGCGGGCCGGCCGCCGCGGCGATGGTGGCCGCGCGGATCACGTGGATCAGGTGAATCACGTTGACGGCGTTGAACGGCGGGCCGGCCGCCGCGCGGGCG

>NZ_CP040551|3|2|2845632-2845802|PILER-CR
GGCCGCTCGGCCGCCGCGCGGGCG	CGTGTTCCGCGTGGCGGCCTCCGCCGTGCCGGCGCGGCGGCCGTGCGG
AGCGGGCCGGCCGCCGCGGCGATG	GTGGCCGCGCGGATCACGTGGATCAGGTGAATCACGTTGACGGCGTTGAACGGCGGG
CCGGCCGCCGCGCGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040551.1\|WP_024428525.1\|2834585_2836016_-\|thiamine-pyridinylase	unknown	unknown	gnl\|CDD\|275334
NZ_CP040551.1\|WP_009925061.1\|2858606_2858921_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_151270440.1\|2857074_2858610_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103
NZ_CP040551.1\|WP_151270437.1\|2846658_2848659_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP040551.1\|WP_004537230.1\|2848712_2849225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_151270434.1\|2839328_2839892_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240030
NZ_CP040551.1\|WP_050865609.1\|2840390_2841185_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|177970
NZ_CP040551.1\|WP_151270438.1\|2849282_2849891_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040551.1\|WP_004533077.1\|2852726_2853824_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP040551.1\|WP_151270436.1\|2845918_2846527_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP040551.1\|WP_151270433.1\|2837885_2838875_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|238211
NZ_CP040551.1\|WP_004199157.1\|2851904_2852576_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP040551.1\|WP_004536578.1\|2850019_2851774_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226179
NZ_CP040551.1\|WP_004551671.1\|2842585_2843422_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_CP040551.1\|WP_151270435.1\|2844120_2845611_+\|arginine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|163522
NZ_CP040551.1\|WP_004528319.1\|2838876_2839332_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377443
NZ_CP040551.1\|WP_004528317.1\|2837129_2837870_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP040551.1\|WP_004533011.1\|2841241_2842390_+\|DUF971-domain-containing-protein	unknown	unknown	gnl\|CDD\|274118
NZ_CP040551.1\|WP_151270439.1\|2853820_2856931_+\|multidrug-efflux-protein	unknown	unknown	gnl\|CDD\|169983
NZ_CP040551.1\|WP_004547623.1\|2836105_2836906_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561

Protein	Function_ID	Function_description	E-value
NZ_CP040551.1\|WP_024428525.1\|2834585_2836016_-\|thiamine-pyridinylase	gnl\|CDD\|275334	TIGR04541, Thiaminase_I_Thiamine_pyridinylase., thiamine pyridinylase. Members of this family are thiamine pyridinylase (EC 2.5.1.2), also called thiaminase I. Most examples of this secreted, thiamine-degrading enzyme are encoded with a cluster for biosynthesis of the thiamine antivitamin bacimethrin. [Cellular processes, Biosynthesis of natural products].	0
NZ_CP040551.1\|WP_151270440.1\|2857074_2858610_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	2.24845e-110
NZ_CP040551.1\|WP_151270437.1\|2846658_2848659_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP040551.1\|WP_151270434.1\|2839328_2839892_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240030	cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.14052e-50
NZ_CP040551.1\|WP_050865609.1\|2840390_2841185_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|177970	PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.	1.08132e-44
NZ_CP040551.1\|WP_004533077.1\|2852726_2853824_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.06959e-71
NZ_CP040551.1\|WP_151270436.1\|2845918_2846527_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	4.05849e-30
NZ_CP040551.1\|WP_151270433.1\|2837885_2838875_-\|thymidylate-synthase	gnl\|CDD\|238211	cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa, a single polypeptide chain codes for both, dihydrofolate reductase (DHFR) and thymidylate synthase (TS), forming a bifunctional enzyme (DHFR-TS), possibly through gene fusion at a single evolutionary point. DHFR-TS is also active as a dimer. Virus encoded dCMP-HMase catalyzes the reversible conversion of dCMP and CH2THF to hydroxymethyl-dCMP and THF. This family also includes dUMP hydroxymethylase, which is encoded by several bacteriophages that infect Bacillus subtilis, for their own protection against the host restriction system, and contain hydroxymethyl-dUMP instead of dTMP in their DNA.	3.27258e-53
NZ_CP040551.1\|WP_004199157.1\|2851904_2852576_-\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	5.95232e-60
NZ_CP040551.1\|WP_004536578.1\|2850019_2851774_+\|amidohydrolase-family-protein	gnl\|CDD\|226179	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism].	8.33569e-153
NZ_CP040551.1\|WP_004551671.1\|2842585_2843422_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	9.25653e-23
NZ_CP040551.1\|WP_151270435.1\|2844120_2845611_+\|arginine-ornithine-antiporter	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP040551.1\|WP_004528319.1\|2838876_2839332_-\|hypothetical-protein	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	6.6851e-05
NZ_CP040551.1\|WP_004528317.1\|2837129_2837870_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	9.84289e-27
NZ_CP040551.1\|WP_004533011.1\|2841241_2842390_+\|DUF971-domain-containing-protein	gnl\|CDD\|274118	TIGR02409, Probable_gamma-butyrobetaine_dioxygenase, gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.	7.68759e-47
NZ_CP040551.1\|WP_151270439.1\|2853820_2856931_+\|multidrug-efflux-protein	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP040551.1\|WP_004547623.1\|2836105_2836906_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	3.37914e-126

>NZ_CP040551.1|WP_151270435.1|2844120_2845611_+|arginine-ornithine-antiporter
MKHSVRHPFHPSTPLPARARAPLRAAAPRQLPFALLTALVIGSMIGSGIFSLPQNMASGAGAGAIVIGWAITGVGMLMLALVYQTLAHRKPELDNGVYAYAHASAGDFVGFNSAWGYWVSAWIGNVGYLVIVFGTLGYAFPAFGDGNTRAAVIGASIVLWIMHAVILRGVRGAAILNALTTIAKIVPLVLFVALAALAFQPHRFTTDFWGNVHLPGVLDQVKSTMLITVWVFIGIEGASVYSARAKNRDDVGRATIVGFVVVLLLLMAVSLLSLGIVSQPELAAMKNPSMAGVLEKAIGRTGVAIAGVGLLVSVGGALLAWTLLAAEAMFTPAKDGVMPAFLSRENAHGVPANALWATNGLVQLFLLVTLVSNATYQALISLATSMILVPYLFSAVYALVIAIKGEGYAPGEAVRVRDATIGAVATVYCCWLLYAAGPKYLLLSALLYAPGALLYAWAKRERGEQPFKPFEAAILIALVAFASLAGWLVAAGRISL
>NZ_CP040551.1|WP_004551671.1|2842585_2843422_-|EamA-family-transporter
MTPSVIALVLFAAILHATWNALLKSGADRLWSLTVMSFATTAAAAVCAALLPLPARASWPYLAASAALQVGYSVFLALAYQRAALGQVYPVVRGAVPLLVTLGGYAWAGQRLGGAPLAGIALVSGGIASLAFGRTRIHSRALAAALATALFIGGYVTIDGLGARVAGHPLAYAAWIFIVYGAAMPAVFLLLGRRPRAGLPRGDTLKSAAGGLISLIGYAAVVDALSRGPVGPIAALRETSIVFSALIGWLWLGEKPSGPRFAACAAVALGAACLAYAA
>NZ_CP040551.1|WP_004533011.1|2841241_2842390_+|DUF971-domain-containing-protein
MLTSHSDHLQIDWETGRSSRYHWVWLRQACECADCFNAHCRQRRFDPAAIAPGIRPERVLLDAHGVRIVWQDAHVSTYALERLARDDYREAIPPVAAAGWTPWPERGAPSASHFAIGDVLDSDAALRRALNQLFESGLVVLKAGDGAAPPFDAVRERLAGFLEPSYFGDFFDLEVKADDATDSVSFSTSALPLHTDIPYCSPPPDYQFLYGLDVDPRCAREQVGCTRFVDGWAVLRELRDASPEMFERLARTRVVYRADYPGARKRYEHRTPIVRLRADGTVERLINNPTKMFFDGIGFDELMPFFRAYHAFKARLVATMRSYLHAWTQGDMVVWDNRRIFHGRGDFGAPGIVRTLRGGYFREGELRARDAFLAAAGERAAG
>NZ_CP040551.1|WP_050865609.1|2840390_2841185_+|methyltransferase-domain-containing-protein
MQTHTVGLSSEYEAQRYSNAHNILRSEIIYGDGFQSPGGIEGFRTMLAENMAIEPGMRLLDIGSGLGGAAFHLASRFDVTVVGLDTAPRMTELATARQPALDPHARVRFVNGDVHAEALAGERFDIIYSRDALMYVHDKPRLFARCHALLATRGRLYVTDFCRGRASPAFDAYASVSGYDLRTIDDYARIVADAGFDVLSARDVSDDARRQLRGDLDRYEARLAARDPSIDPLDAEHIVERWRRKIGFVDEGCLLQGLFVAQRR
>NZ_CP040551.1|WP_151270434.1|2839328_2839892_-|NUDIX-domain-containing-protein
MEAANGRRLARRGRTNGARRQGRGCGASTMTDPKGTGDAALATPRVAVIAVTFRGDDVILVRRGKEPQKGTWGFPGGSVEPDECLREAAARELFEETGVRAEVGEPFDVVEVIGFDPHGRHHHYVLVAMLCRHVEGALRPGDDATDCRWVRVPADLSRFPGALADHVARVAQRAHALNHPNRKENSR
>NZ_CP040551.1|WP_004528319.1|2838876_2839332_-|hypothetical-protein
MKRMFLGGPFKSLVDKQTGVMPEGSINLFRRVIDHFEARGWDVHCAHRREHWGREFMTPDVCTKTDYEQISLCDYFVAFPGAPASPGTHIELGWASALGKPIVLLLEADKEYAYLVRGLDEITRIERVEFSGDRIDPVAIEAAIGRFDARG
>NZ_CP040551.1|WP_151270433.1|2837885_2838875_-|thymidylate-synthase
MLRYPGLSELYLATLRDVCGAYEYRSAPRGHAEHEIIGYGARIDDPRARFCRHAARKQNVVFNYAEALWYLSGRNDLEFIAHYAPSMARYSPDGKHLPGTGYGARLLHYGERGLDQIERALDILSRDDAESKRVVLQIFSADEELYRRNIDVSCTLGLQLLLREGRLHMVAFMRANDAYIGLLNDVFSFTFLQEYLASRLGCELGTYAHQVGSIHVYDDNLPRVQALLDDSDAAIVTAAAPPRMPAGTRAATIARVLEHEGRIRAGRVSLAALRDIDLDPYWRDVLGLFWIYREIKAGNPPPDEALAFVGSFHRAYLMNRWDMASASLQ
>NZ_CP040551.1|WP_004528317.1|2837129_2837870_-|methyltransferase-domain-containing-protein
MKTDWTEHEVSQRFHAYDDRIEARFGYQPLIAELTGSHGTAIRVLDYGCGGGKVARRLRAAGVARVTGVDIAPTMIEQAIAAGVDDGLDYVHIDGPSLPFDDASFDAAISCFLFVNIAERAALARVAAEVRRVLKPGGAYYVLDTNPRTTGVQYPTFRNGEPGIVYRDGDARPVHLNVPGEGVFDVVDTHWEIPTYRHAFETAGLALAAVMELGFRAADAGGAPGAHADADGSKPFVLFKATRPPR
>NZ_CP040551.1|WP_004547623.1|2836105_2836906_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MIANVLTIAGTDPTGGAGIQADLKAFSAMRAYGMAAITAVVAQNTTGVRSFRALDPAFVADQIDAVFDDVAVHAVKIGMIATAAIAEAVAAALARHRAAPVVLDPVMVAKSGDRLLDPDAVDAIRDKLVPISTLITPNLPEAGVLLGRSEPRTLAEMHAAAAELHALGSRWVLLKGGHLAGERSVDVLRGPAAATVELSAPRVATNNDHGTGCTLSAAIAALLPSHSVEDSVCQAKAYLSDALAASGELEVGRGHGPVHHFHALWN
>NZ_CP040551.1|WP_024428525.1|2834585_2836016_-|thiamine-pyridinylase
MRRLLCCFTIVLGFLFAAPSHAGDAAAVGQLTVALYPWVPRVDQFKRAIETEWKKAQPGVALRFVSAHAWDGGYRNDPPASADVYVYDAIFLDYFRSQNWLEPLAADEIQHIDDFLPYAIQGVKAGDRYYSIPQLGCANVLFYRKDDAALAAATTLTQVRGALEQCTFTSEIPPDRRGLMVDMSGRTTNAALYLDAAHSRTGAYPLPLPWNANDLNGEALGSLRALMAMSSWPNATAELPGQYDRSVWFSDGEGRAVIGYSESMSAMSEAARRDLDFKFLPLSDTPQPPLFYADVIGVNTTTHARGTRALAVQLANVIAASSTMVQSVGPDGSGVPQYLFSARRSVLHTLAQRYPLYRKMVALLDAREPVMFKIDAQSRNWLASMSGPIAQRARADYPCGCDIDTALPIADYRGAQAVCPTVCAAQGGWNGQWTNQSPAAPAGQSACGCNACPTSAAAKLPRALATRAAPGDRAKP
>NZ_CP040551.1|WP_151270436.1|2845918_2846527_+|rhomboid-family-intramembrane-serine-protease
MTLAIVVLNVIGFLVELAAPERVLSLFALWPPRSGAGLPPAAAPAFHVWQLVTYSALHAGLSHLLFNMLGLVMFGRDVERALGRARFGTLYLASVVCGALTQLALARYSAAAAAPTIGASAGVFGVLAAYALLYPSRRVVLLIPPIPMRAWVFALLYAGGELLLGVAGAASGIAHFAHLGGMFGAIALMLAWGRPRSEWPVQ
>NZ_CP040551.1|WP_151270437.1|2846658_2848659_-|ATP-dependent-zinc-metalloprotease-FtsH
MKSETGYMGFVVVLVFMVLLALQLATLSAPATQIAYSDFRKLAAAAQLDDLEVSPTRITGVLRSASAAAALPASDAEAIKRAGTPWRFSTKRVTDERLIDTLAATGTRYRGADDDTWIGTLASWIVPIAVFALVWNLMLRRPRGGLQDWSGVGKSKPRVYVEAKTGIDFDDIAGIDEAKAELQQIVAFLRAPARYQRLGGKIPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSTSGSSFVEMFVGVGAARVRDLFEQAQQKAPCIIFIDELDALGKVRGAGLASGNDEREQTLNQLLVEMDGFQANSGVILMAATNRPEILDPALLRPGRFDRHIAIDRPDLTGRRQILSVHVKHVKLGPDVDLGELASRTPGFVGADLANIVNEAALHAAEFDKPAIDMSDFDEAIDRAMTGMERKSRVMSEREKITIAHHEAGHALIAQTRAHSDPVKKVSIIPRGIAALGYTQQVPTEDRYVLRKSELLDRLDVLLGGRVAEEIVFGDASTGAENDLERATEMARHMVARYGMSERIGLATFGDADTQGLSPLVWRRGGERCSESTATRIDDEIQRLLAEAHDRVSRTLKERRGALERIAGYLLEHEVVDHDKLVRLVNDEPTPEPGARDPGGDAAKRSGIGAAPAKPPAEVGSAELRDPARKADNADHSVPQ
>NZ_CP040551.1|WP_004537230.1|2848712_2849225_-|hypothetical-protein
MIYGSNELYAAMRQRRDRLPRAHPADGYGAPARLKSGMGCTECGALYDDGRWSWHAAAGALLQIVCPACRRIRERASAGELVLEGGYFARRRDDIVALLRRHAGDDINARPLGRILSIDALPARMVVRTKGSPLVHRLTEALVRTHRGDLEIDYREGEDTLRAHWMRDAA
>NZ_CP040551.1|WP_151270438.1|2849282_2849891_+|hypothetical-protein
MRGRRRNRGIAGMRSMAVRGATYTTEHRRSPARAIDADQRSATSRRFARADWCGFVANRSEPARSPMPAADSRVRAGRGRARVVAASGRIPAVTRSRACRHGVRPMKVSGARRASAAAAYPVAPRPRSRPAGDAALQHAVARVAAARRRRGRGSAEPMPHEGAARSGARSRDHARRACCVRRARASDESMRRFEAMLACNSS
>NZ_CP040551.1|WP_004536578.1|2850019_2851774_+|amidohydrolase-family-protein
MTRYDTIIRNGLWFDGTLAEPRPRELGIRDGRVAAVSDTPLAADGASVIDATGKWVMPGFIDIHTHYDAEILVSPGLPESVRHGVTSVFLGSCSLSTVHANALDCTDLFSRVEALPREQMLAVLSRVKTWDTAAAYVRHLESLPLGPNVAAFLGHSDLRTHVLGLGRAVDDRVRPHEAELQRMERLLDDALDAGFVGLSSMTTPWDKLDGERYRSKSLPSTFATWREYRRLNRVLRRRGRVLQSAPNTTNPLNGLLFMAESCGYFVRKPLRTSLLVAADSKAAPRGTIDVQLGGVRVANALFRGELVWQHLPVPFEVYADGIDFVIFEEFGAGRAALHLADALERNKLLQNEGYRREFRRQVGKGFDLRLWTRDLHDTRIVGCPDASVVGKSFGQVANERGVHPADAFLDLVVAHGQRLRWCMTIANHRADVLDRIATHPALQIGFADSGAHLRNMAFYNAPVRFLRRVREAERAGRPFMSVQQAVHRLTGELGAYFGVDAGTLRAGDRADIAIVDPAHLDASVDAYHEEDMAVFGGLRRLVNRSGAAIAATLVNGQLVYRDGAFAEGFGDTRRSGRFLRAAAR
>NZ_CP040551.1|WP_004199157.1|2851904_2852576_-|transcriptional-regulator
MDDNFSKQEIPVSERVLNVLKRRGPLQAAELGAYLGTTGEAARQQLKKLEAEGLVEAQNVPQGVGRPARIWRLTSLGHGHFPDAHADMTVDLIRIIRTTLGQPTLDLLIAARETEMRRTYAHTLAGVTDPEERIARLAELRDREGYFAEWSRAPDGDGWLFIENHCPICAAATACQGFCRSELEIFREMLGDALTIERIEHIPAGARRCAYRIRPSGAGAGGE
>NZ_CP040551.1|WP_004533077.1|2852726_2853824_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MGRRLLLALALLAFIFGGLFLWRESRVQAADHPPAPPAALTVSAVAVRAAPERVTLDAVGSLDAVRQVTLAPEVAGRVVALQFDAGSAVRKGQLIVQLFDEPERAKLASIQAKAAYAKRQLDRSQALAQTGAEPRNLFDRHRFDFDAAAADIRETQAVITQKAVRAPFDGVLGLRRVNLGQYLNAGDAIATLTDLDTLYANFTVPQKNLSQLRLGQSVSITTDAYPERTLVARVSAIEPQIGTDTRNVAVQATLPNPDHLLRPGMYIQARLELPPREHALTVPDTAVQTSQRGESVLVVGKPGRDGLGVVRLQPVRTGRRADGRIAIADGLRPGDVVVTSGQVRLAAGDRVKVALDDGAGSGAAQ
>NZ_CP040551.1|WP_151270439.1|2853820_2856931_+|multidrug-efflux-protein
MNAGAPHDSGAARARFTDVFVRRPVLSLVFSLLILLVGLRALMSLPVRQYPALESATISVATDYPGASQELMQGFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQVKYKLPADAYDSVITKLTDAPTAVMYLGFASDALSIAQITDYVVRVAQPLVTTVPGVASAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANTDLTDVGAFNEMVVKSAPNGGGLVRLKDVATVEIGGENYNSSALMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHAYRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDYMERYAPDIERVFRTLPEADTSFILNSYGGSNLGFAGVNLVDWDKRTRSAAALQALIQARGDGIRGERVFAFQLPALPASSGGLPIQMVLRTPSGFADLYAQMERIKAAAQKSGLFAVLDSDLTFDSRAVGVTIDRNQANTLGVTMKDIADTLAVLVGENYVNRFNFKGRSYDVIPQVSRSERLSSEMLSRYYVKTGSGQMIPLSTVIQVTNGSQANALSQFNQMNAATFSAVPAPGVTMGDAVAFLEAQKLPAGFSIDWLGESRQYVQEGNRLAVTFGFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGLISKHGILMVSFANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGVGAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAKDHGAAMRSERAQLLAATR
>NZ_CP040551.1|WP_151270440.1|2857074_2858610_+|efflux-transporter-outer-membrane-subunit
MRTAVRAAAVAAAFFAAGCTLAPRYERPAAPVSGAFPADGVYAAQPGAAPGARSANGQAAVDIGWREFFVDPRLQRLIEIALKNNRDLRVSVLNVEASRAQYQITRAGLFPTLSGTGTGTIQRTPAGVSITGQPLISRTYNVGVSASWELDLFGRVQSLKDQALAQYFATAQARKAAEISLVASVADQYLTLLSTDDLLQVTQNTLKSARASYDLTKLQFDNGTGSELDLRQAQTVVETALASQQAQARARAQALNALVLLIGEPLPDDLPAGLPLNAQNLLTDIPAGLPSDLLTRRPDIMQAEETLRAANANIGAARAAFFPKISLTSAFGTASPTLGGLFKAGTAAWSFAPNIALPIFEGGQNIANLDLAHVQKRIEIANYEKAIQSAFREVSDGLAARGTYDQQIAALERNEHAQQRRYDLSDLRYKNGVDSYLSVLTAQTDLYSAQQQLISARLARWTNLVDLYRALGGGWLERAGETPRPADAPVDYGKAAPAPASASARTAAVTG
>NZ_CP040551.1|WP_009925061.1|2858606_2858921_+|hypothetical-protein
MSAQPDMRQPNARQHSARRPSAARAGRERIGRTWRTKKKTDREMIGDTVIGTDAQSAMLLHNRTQQPIKSSPRTRETATKRKSIQAFDITIQKLPCSSRCVSQC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

922068 : 999907

Ralstonia_phage(25.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004539275.1\|922068_922797_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.2e-21	31.2
WP_151270522.1\|923619_925374_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_014696891.1\|925450_925696_-	hypothetical protein	NA	NA	NA	NA
WP_009978512.1\|925720_926056_-	hypothetical protein	NA	NA	NA	NA
WP_004553663.1\|926225_926591_+	hypothetical protein	NA	NA	NA	NA
WP_004540322.1\|926558_926864_-	hypothetical protein	NA	NA	NA	NA
WP_151270040.1\|926864_936233_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_071811406.1\|936384_936582_-	hypothetical protein	NA	NA	NA	NA
WP_004529300.1\|936582_936846_-	hypothetical protein	NA	NA	NA	NA
WP_076849159.1\|937022_937265_+	hypothetical protein	NA	NA	NA	NA
WP_004544773.1\|937201_937363_-	hypothetical protein	NA	NA	NA	NA
WP_151270041.1\|937469_942065_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	1.1e-27	38.3
WP_004549806.1\|942051_943320_-	hypothetical protein	NA	NA	NA	NA
WP_151270042.1\|943335_945540_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.4e-42	27.8
WP_004529305.1\|945507_945723_+	hypothetical protein	NA	NA	NA	NA
WP_009927037.1\|946409_946703_+	hypothetical protein	NA	NA	NA	NA
WP_004524834.1\|947514_947862_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_151270043.1\|947858_948266_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZCV4	Stx2-converting_phage	1.7e-09	33.6
WP_151270044.1\|948698_950732_-	hypothetical protein	NA	NA	NA	NA
WP_004555376.1\|950972_953144_-	alpha-galactosidase	NA	NA	NA	NA
WP_151270045.1\|953148_954000_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004544732.1\|954000_954954_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004524827.1\|954986_956228_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_151270046.1\|956263_957508_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_151270047.1\|957550_959611_-	hypothetical protein	NA	NA	NA	NA
WP_076867276.1\|959752_959965_+	hypothetical protein	NA	NA	NA	NA
WP_076849987.1\|959961_961020_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_004553675.1\|962414_963200_+	hypothetical protein	NA	NA	NA	NA
WP_009941143.1\|963931_964360_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004557924.1\|966542_967109_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_076906301.1\|972053_973205_+	hypothetical protein	NA	NA	NA	NA
WP_151270523.1\|973215_973545_-	hypothetical protein	NA	NA	NA	NA
WP_122650910.1\|974509_975028_-\|transposase	transposase	S5WIU1	Leptospira_phage	1.9e-21	54.3
WP_151270048.1\|974642_976493_-	RHS repeat protein	NA	NA	NA	NA
WP_151270049.1\|976452_977163_-	hypothetical protein	NA	NA	NA	NA
WP_151270050.1\|977178_979383_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_151270051.1\|982058_983492_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004524812.1\|983488_985360_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_080003475.1\|985364_985913_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004190698.1\|985943_986435_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004190849.1\|986494_988003_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004524810.1\|987995_988574_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004190988.1\|988636_989716_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004529325.1\|992362_992590_+	hypothetical protein	NA	NA	NA	NA
WP_151270524.1\|992574_993534_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_151270052.1\|993539_997169_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190689.1\|997171_998488_-	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_004190585.1\|998503_999907_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_2

1836959 : 1842101

Burkholderia_virus(88.89%)

integrase,transposase

attL 1826730:1826746|attR 1852896:1852912

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1826730:1826746	attL	NA	NA	NA	NA
WP_004536695.1\|1836959_1837199_-	HNH endonuclease	Q8W6N0	Burkholderia_virus	8.2e-36	90.9
WP_071897994.1\|1837109_1837307_+	hypothetical protein	NA	NA	NA	NA
WP_004525420.1\|1837616_1837901_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
WP_004547086.1\|1837884_1838106_-	BrnT family toxin	NA	NA	NA	NA
WP_025988352.1\|1838725_1839001_+	hypothetical protein	Q6JIH4	Burkholderia_virus	6.1e-43	98.9
WP_009923452.1\|1839010_1839142_+	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_004557715.1\|1839143_1839251_+	hypothetical protein	Q6JIH6	Burkholderia_virus	8.2e-12	97.1
WP_004525418.1\|1839277_1839499_+	hypothetical protein	NA	NA	NA	NA
WP_057039348.1\|1839483_1839750_-	hypothetical protein	Q8W6Q4	Burkholderia_virus	6.1e-40	95.2
WP_076805202.1\|1839939_1840638_-	hypothetical protein	Q6JII1	Burkholderia_virus	1.7e-105	96.6
WP_004537646.1\|1840779_1840929_+	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_151270219.1\|1840925_1842101_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	5.1e-211	98.2
1852896:1852912	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1993824 : 2065565

Vibrio_phage(25.0%)

plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525541.1\|1993824_1994592_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_151270251.1\|1994630_1995632_-	HpnL family protein	NA	NA	NA	NA
WP_004525542.1\|1995628_1996402_-	hypothetical protein	NA	NA	NA	NA
WP_009969808.1\|1996398_1997094_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_004188420.1\|1997458_1998973_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_076903922.1\|1998942_1999239_-	hypothetical protein	NA	NA	NA	NA
WP_151270252.1\|2000682_2001621_+	hypothetical protein	NA	NA	NA	NA
WP_151270253.1\|2001654_2002203_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004530038.1\|2002199_2003711_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|2003854_2004382_+	hypothetical protein	NA	NA	NA	NA
WP_004190879.1\|2004461_2004893_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|2004906_2006769_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|2006765_2007755_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_151270254.1\|2007757_2010628_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	1.8e-60	27.2
WP_151270255.1\|2010618_2012910_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004535223.1\|2013075_2015364_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004547074.1\|2015367_2017584_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004547094.1\|2017583_2018654_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004525551.1\|2018656_2019373_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|2019415_2019805_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004202226.1\|2019810_2020404_+	hypothetical protein	NA	NA	NA	NA
WP_151270256.1\|2020400_2021762_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_151270257.1\|2021787_2023503_+	hypothetical protein	NA	NA	NA	NA
WP_151270258.1\|2023499_2027003_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|2027061_2027421_+	hypothetical protein	NA	NA	NA	NA
WP_151270259.1\|2027443_2027866_+	hypothetical protein	NA	NA	NA	NA
WP_004530793.1\|2028090_2028462_+	hypothetical protein	NA	NA	NA	NA
WP_009923697.1\|2028559_2028733_-	hypothetical protein	NA	NA	NA	NA
WP_151270260.1\|2029008_2029908_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_076857594.1\|2030005_2030134_+	hypothetical protein	NA	NA	NA	NA
WP_011205424.1\|2030141_2031461_+	glycosyltransferase	NA	NA	NA	NA
WP_045590599.1\|2033258_2034254_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_076847054.1\|2034379_2034562_+	hypothetical protein	NA	NA	NA	NA
WP_076853379.1\|2036437_2036626_-	hypothetical protein	NA	NA	NA	NA
WP_004186853.1\|2036860_2038114_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_076882195.1\|2038367_2038670_+	hypothetical protein	NA	NA	NA	NA
WP_151270261.1\|2038664_2040329_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	4.1e-57	31.6
WP_151270262.1\|2040460_2042026_-	glycoside hydrolase family 68 protein	NA	NA	NA	NA
WP_004530800.1\|2042214_2043231_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|2043719_2044919_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004198247.1\|2045096_2046122_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009923708.1\|2046280_2046544_+	hypothetical protein	NA	NA	NA	NA
WP_004186965.1\|2046555_2047830_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.9e-105	54.1
WP_004186989.1\|2047902_2048874_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|2049024_2049558_+	4-vinyl reductase	NA	NA	NA	NA
WP_004186960.1\|2049618_2051682_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004186901.1\|2051684_2053610_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_151270263.1\|2053614_2054787_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004530055.1\|2054783_2055569_+	drug:proton antiporter	NA	NA	NA	NA
WP_004523139.1\|2055593_2056862_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004530056.1\|2056882_2058028_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004186918.1\|2058137_2059001_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004186811.1\|2059181_2060837_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|2060923_2061799_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004186868.1\|2061942_2062842_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004186939.1\|2062977_2064531_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_151270264.1\|2064566_2065565_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_4

2745073 : 2848659

Burkholderia_virus(46.67%)

protease,plate,holin,tail,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004543470.1\|2745073_2745946_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_044353057.1\|2746156_2746861_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_004199295.1\|2748649_2748808_+	lipoprotein	NA	NA	NA	NA
WP_151270417.1\|2748823_2749345_+	sigma-70 family RNA polymerase sigma factor	A0A076YQ50	Rhizobium_phage	6.7e-06	27.1
WP_151270418.1\|2750220_2751207_+	YceI family protein	NA	NA	NA	NA
WP_028358792.1\|2751246_2751606_+	hypothetical protein	NA	NA	NA	NA
WP_085503275.1\|2751859_2752090_+	hypothetical protein	NA	NA	NA	NA
WP_004524116.1\|2752111_2752621_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_076897512.1\|2754355_2756395_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_004542822.1\|2756606_2757587_-	ABC transporter permease	NA	NA	NA	NA
WP_080291592.1\|2757579_2758497_-	ABC transporter permease	NA	NA	NA	NA
WP_004551656.1\|2760466_2761516_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004202595.1\|2761595_2761808_+	hypothetical protein	NA	NA	NA	NA
WP_004543576.1\|2762136_2762877_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_038727091.1\|2763201_2763453_-	hypothetical protein	NA	NA	NA	NA
WP_151270419.1\|2763615_2764875_-	monooxygenase	NA	NA	NA	NA
WP_004202588.1\|2765092_2766562_-	MFS transporter	NA	NA	NA	NA
WP_151270420.1\|2766786_2767143_+	hypothetical protein	NA	NA	NA	NA
WP_004539128.1\|2767064_2767313_-	hypothetical protein	NA	NA	NA	NA
WP_004543649.1\|2767761_2767962_-	hypothetical protein	NA	NA	NA	NA
WP_004524130.1\|2767954_2768227_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_004184766.1\|2768330_2769725_-	heavy metal sensor histidine kinase IrlS	W8CYF6	Bacillus_phage	1.2e-20	28.9
WP_004197868.1\|2769721_2770411_-	heavy metal response regulator transcription factor IrlR	W8CYM9	Bacillus_phage	1.7e-36	36.8
WP_151270421.1\|2770417_2773651_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_151270422.1\|2773696_2775163_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004532722.1\|2776787_2777072_-	hypothetical protein	NA	NA	NA	NA
WP_004524134.1\|2777470_2777611_-	bacteriophage protein	NA	NA	NA	NA
WP_151270423.1\|2778075_2778249_+	hypothetical protein	NA	NA	NA	NA
WP_004528293.1\|2778236_2778725_-	hypothetical protein	NA	NA	NA	NA
WP_004197880.1\|2779056_2779542_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_009897097.1\|2779746_2780085_-	helix-turn-helix domain-containing protein	A4JWW9	Burkholderia_virus	5.4e-57	100.0
WP_009971782.1\|2780325_2780478_+	hypothetical protein	R4JMC2	Burkholderia_phage	1.2e-11	68.0
WP_009976613.1\|2780465_2781248_+	hypothetical protein	A4JWW8	Burkholderia_virus	1.5e-142	99.6
WP_011205516.1\|2781381_2781567_+	hypothetical protein	A4JWW7	Burkholderia_virus	4.3e-24	100.0
WP_009897093.1\|2781563_2781785_+	hypothetical protein	A4JWW6	Burkholderia_virus	1.6e-38	100.0
WP_009909345.1\|2781788_2782004_+	hypothetical protein	A4JWW5	Burkholderia_virus	7.9e-30	98.6
WP_006027274.1\|2782012_2782150_+	hypothetical protein	A4JWW4	Burkholderia_virus	6.2e-20	97.8
WP_023358395.1\|2782306_2782525_+	hypothetical protein	NA	NA	NA	NA
WP_009976619.1\|2782476_2782716_+	hypothetical protein	NA	NA	NA	NA
WP_038778439.1\|2784203_2785997_+	replication endonuclease	A4JWW0	Burkholderia_virus	0.0e+00	99.5
WP_004532731.1\|2786274_2786481_+	bacteriophage-acquired protein	A4JWV8	Burkholderia_virus	8.7e-34	100.0
WP_011205518.1\|2786567_2787224_+	AAA family ATPase	A4JWV7	Burkholderia_virus	3.8e-115	100.0
WP_011205519.1\|2787424_2787580_+	CopG family transcriptional regulator	A4JWV6	Burkholderia_virus	1.6e-19	98.0
WP_004532793.1\|2787682_2788216_+	bacteriophage gp29 protein	A4JWV5	Burkholderia_virus	8.4e-97	100.0
WP_004532838.1\|2788212_2788950_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	1.0e-132	99.6
WP_011205521.1\|2788958_2790080_+	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	4.4e-220	100.0
WP_011205522.1\|2790644_2790968_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	1.7e-55	99.1
WP_004202809.1\|2790970_2791327_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.9e-42	100.0
WP_151270424.1\|2791370_2792426_-\|portal	phage portal protein	K4NZV0	Burkholderia_phage	1.7e-205	98.9
WP_004532870.1\|2794334_2795144_+\|capsid	GPO family capsid scaffolding protein	A4JWU8	Burkholderia_virus	3.2e-148	100.0
WP_004531048.1\|2795177_2796191_+\|capsid	phage major capsid protein, P2 family	K4NZP8	Burkholderia_phage	7.2e-190	100.0
WP_151270425.1\|2797447_2797699_+	hypothetical protein	K4NXI9	Burkholderia_phage	3.8e-39	98.8
WP_004524438.1\|2797695_2797902_+\|tail	tail protein	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_004524439.1\|2797916_2798261_+	membrane protein	K4NZQ3	Burkholderia_phage	2.9e-50	100.0
WP_004524440.1\|2798262_2798535_+\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_009941345.1\|2798531_2799344_+	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	1.2e-150	100.0
WP_009971799.1\|2799340_2799781_+	bacteriophage protein	K4NXJ2	Burkholderia_phage	3.8e-71	100.0
WP_004552557.1\|2799758_2799893_+	hypothetical protein	K4PAX1	Burkholderia_phage	7.4e-18	100.0
WP_004531054.1\|2799885_2800302_+\|tail	phage tail protein	A4JWT7	Burkholderia_virus	3.3e-72	100.0
WP_038771442.1\|2800298_2800766_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	9.4e-76	96.1
WP_076830964.1\|2800797_2801193_-	hypothetical protein	NA	NA	NA	NA
WP_151270426.1\|2801353_2802133_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	2.2e-138	97.6
WP_009941342.1\|2802306_2802987_+\|plate	phage baseplate assembly protein V	A4JWT3	Burkholderia_virus	1.9e-122	99.1
WP_004531058.1\|2802983_2803346_+\|plate	bacteriophage baseplate assembly protein W	K4PAX6	Burkholderia_phage	1.7e-61	100.0
WP_004531059.1\|2803342_2804248_+\|plate	bacteriophage baseplate assembly protein J	K4NZR5	Burkholderia_phage	3.0e-163	100.0
WP_004531060.1\|2804240_2804795_+\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	2.2e-100	100.0
WP_085547614.1\|2807903_2809076_+\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	1.1e-221	98.7
WP_085547613.1\|2809091_2809601_+\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	4.3e-90	94.7
WP_004531064.1\|2809658_2810003_+\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	1.0e-55	100.0
WP_004552648.1\|2810011_2810125_+\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_009935906.1\|2813103_2813529_+\|tail	phage tail protein	A4JWS2	Burkholderia_virus	3.3e-72	99.3
WP_151270427.1\|2815447_2816563_-	alanine dehydrogenase	NA	NA	NA	NA
WP_004536620.1\|2816627_2816861_-	hypothetical protein	NA	NA	NA	NA
WP_004524142.1\|2817287_2817617_-	H-NS histone family protein	NA	NA	NA	NA
WP_151270566.1\|2817630_2818182_-	prop effector	NA	NA	NA	NA
WP_009971811.1\|2818192_2818477_-	hypothetical protein	NA	NA	NA	NA
WP_151270428.1\|2818517_2818697_+	hypothetical protein	NA	NA	NA	NA
WP_151270429.1\|2818621_2819458_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_151270430.1\|2820395_2822243_+	Hsp70 family protein	NA	NA	NA	NA
WP_151270431.1\|2822246_2825054_+	molecular chaperone DnaK	A0A2H4UU19	Bodo_saltans_virus	6.0e-08	26.5
WP_004557566.1\|2825347_2826481_-	CapA family protein	S4VS02	Pandoravirus	9.5e-114	56.2
WP_004528305.1\|2827048_2827309_-	hypothetical protein	NA	NA	NA	NA
WP_151270432.1\|2827591_2827813_+	hypothetical protein	NA	NA	NA	NA
WP_024428523.1\|2828764_2829388_-	hypothetical protein	NA	NA	NA	NA
WP_053566184.1\|2832041_2832521_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_011205539.1\|2833526_2834336_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_024428525.1\|2834585_2836016_-	thiamine pyridinylase	NA	NA	NA	NA
WP_004547623.1\|2836105_2836906_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_004528317.1\|2837129_2837870_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_151270433.1\|2837885_2838875_-	thymidylate synthase	NA	NA	NA	NA
WP_004528319.1\|2838876_2839332_-	hypothetical protein	NA	NA	NA	NA
WP_151270434.1\|2839328_2839892_-	NUDIX domain-containing protein	A0A0E3JJF3	Streptomyces_phage	9.4e-14	42.1
WP_050865609.1\|2840390_2841185_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_004533011.1\|2841241_2842390_+	DUF971 domain-containing protein	NA	NA	NA	NA
WP_004551671.1\|2842585_2843422_-	EamA family transporter	NA	NA	NA	NA
WP_151270435.1\|2844120_2845611_+	arginine-ornithine antiporter	NA	NA	NA	NA
WP_151270436.1\|2845918_2846527_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_151270437.1\|2846658_2848659_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	1.4e-104	46.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040552

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040551

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection